Multiple sequence alignment - TraesCS4A01G335000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G335000 chr4A 100.000 4878 0 0 1 4878 617928527 617923650 0.000000e+00 9009.0
1 TraesCS4A01G335000 chr4A 76.880 1436 267 35 938 2330 617938219 617936806 0.000000e+00 752.0
2 TraesCS4A01G335000 chr4A 77.786 1292 223 47 979 2225 617912195 617910923 0.000000e+00 737.0
3 TraesCS4A01G335000 chr4A 78.016 978 160 27 991 1933 617904345 617903388 9.170000e-157 564.0
4 TraesCS4A01G335000 chr4A 97.523 323 7 1 4556 4878 564650311 564650632 7.140000e-153 551.0
5 TraesCS4A01G335000 chr4A 75.853 1085 235 21 3269 4339 617934885 617933814 1.200000e-145 527.0
6 TraesCS4A01G335000 chr4A 77.299 881 170 25 3344 4214 617935902 617935042 4.390000e-135 492.0
7 TraesCS4A01G335000 chr4A 83.155 374 57 6 2757 3124 617908616 617908243 2.180000e-88 337.0
8 TraesCS4A01G335000 chr4A 81.138 334 57 4 2757 3087 617877174 617876844 3.740000e-66 263.0
9 TraesCS4A01G335000 chr5B 96.227 1988 66 3 2576 4558 701514583 701516566 0.000000e+00 3247.0
10 TraesCS4A01G335000 chr5B 96.520 1839 56 7 755 2587 701512599 701514435 0.000000e+00 3035.0
11 TraesCS4A01G335000 chr5B 76.721 1293 241 40 1032 2305 701503817 701505068 0.000000e+00 665.0
12 TraesCS4A01G335000 chr5B 77.087 1270 192 60 952 2203 701517283 701518471 4.120000e-180 641.0
13 TraesCS4A01G335000 chr5B 84.074 653 82 15 952 1588 701522508 701523154 1.160000e-170 610.0
14 TraesCS4A01G335000 chr5B 98.452 323 5 0 4556 4878 233448500 233448822 1.970000e-158 569.0
15 TraesCS4A01G335000 chr5B 80.993 705 131 3 3515 4216 701506154 701506858 1.530000e-154 556.0
16 TraesCS4A01G335000 chr5B 78.214 840 157 20 3381 4216 701526893 701527710 9.360000e-142 514.0
17 TraesCS4A01G335000 chr5B 97.942 243 5 0 1 243 701511842 701512084 5.840000e-114 422.0
18 TraesCS4A01G335000 chr5B 93.385 257 12 4 240 495 701512146 701512398 4.610000e-100 375.0
19 TraesCS4A01G335000 chr5B 78.538 424 78 11 2773 3185 701531463 701531884 2.890000e-67 267.0
20 TraesCS4A01G335000 chr5B 75.129 583 120 16 1628 2203 701523939 701524503 2.920000e-62 250.0
21 TraesCS4A01G335000 chr5B 92.216 167 10 3 2584 2747 87234588 87234422 2.940000e-57 233.0
22 TraesCS4A01G335000 chr5B 81.272 283 50 3 2844 3124 701505432 701505713 4.910000e-55 226.0
23 TraesCS4A01G335000 chr5B 97.656 128 1 2 494 620 701512468 701512594 8.220000e-53 219.0
24 TraesCS4A01G335000 chr5B 79.452 292 53 6 3539 3825 701532301 701532590 2.980000e-47 200.0
25 TraesCS4A01G335000 chr5B 94.737 38 2 0 3919 3956 546569060 546569097 5.270000e-05 60.2
26 TraesCS4A01G335000 chr5D 86.677 623 75 6 969 1589 549869930 549870546 0.000000e+00 684.0
27 TraesCS4A01G335000 chr5D 77.472 1234 205 47 958 2146 549876823 549878028 0.000000e+00 671.0
28 TraesCS4A01G335000 chr5D 77.765 886 169 23 3338 4214 549865810 549866676 2.010000e-143 520.0
29 TraesCS4A01G335000 chr5D 73.659 1063 229 39 3187 4215 549878921 549879966 9.980000e-97 364.0
30 TraesCS4A01G335000 chr5D 94.545 165 9 0 2588 2752 299073582 299073418 6.270000e-64 255.0
31 TraesCS4A01G335000 chr5D 76.833 341 52 13 2852 3182 549872804 549873127 3.020000e-37 167.0
32 TraesCS4A01G335000 chr5D 75.517 290 55 11 352 635 549869401 549869680 1.430000e-25 128.0
33 TraesCS4A01G335000 chr7A 98.142 323 6 0 4556 4878 688841509 688841831 9.170000e-157 564.0
34 TraesCS4A01G335000 chr7A 97.833 323 6 1 4556 4878 27642598 27642277 1.530000e-154 556.0
35 TraesCS4A01G335000 chr7A 76.775 676 136 16 3510 4175 46255004 46255668 4.640000e-95 359.0
36 TraesCS4A01G335000 chr7A 92.025 163 13 0 2585 2747 696171912 696172074 3.800000e-56 230.0
37 TraesCS4A01G335000 chr3B 98.142 323 6 0 4556 4878 602780142 602779820 9.170000e-157 564.0
38 TraesCS4A01G335000 chr3B 97.833 323 7 0 4556 4878 825276605 825276283 4.260000e-155 558.0
39 TraesCS4A01G335000 chr3B 73.574 666 149 21 3508 4154 818443315 818443972 3.800000e-56 230.0
40 TraesCS4A01G335000 chr5A 97.531 324 7 1 4556 4878 665426893 665427216 1.980000e-153 553.0
41 TraesCS4A01G335000 chr5A 94.737 38 2 0 3919 3956 565660515 565660552 5.270000e-05 60.2
42 TraesCS4A01G335000 chr3A 97.523 323 8 0 4556 4878 710255574 710255252 1.980000e-153 553.0
43 TraesCS4A01G335000 chr4B 97.214 323 9 0 4556 4878 24666289 24666611 9.230000e-152 547.0
44 TraesCS4A01G335000 chr4B 93.373 166 11 0 2587 2752 386210405 386210240 3.770000e-61 246.0
45 TraesCS4A01G335000 chr1A 77.908 851 175 9 3374 4216 38714212 38715057 7.240000e-143 518.0
46 TraesCS4A01G335000 chr1B 77.791 851 176 9 3374 4216 58557440 58558285 3.370000e-141 512.0
47 TraesCS4A01G335000 chr6D 74.845 807 190 12 3375 4175 468168585 468167786 2.160000e-93 353.0
48 TraesCS4A01G335000 chrUn 74.349 807 191 13 3375 4175 346081534 346080738 3.640000e-86 329.0
49 TraesCS4A01G335000 chr2D 73.639 808 188 21 3359 4154 2048121 2048915 6.180000e-74 289.0
50 TraesCS4A01G335000 chr2D 93.333 165 11 0 2588 2752 268894294 268894458 1.360000e-60 244.0
51 TraesCS4A01G335000 chr2D 92.727 165 12 0 2588 2752 512768303 512768139 6.310000e-59 239.0
52 TraesCS4A01G335000 chr2B 92.727 165 12 0 2588 2752 602995416 602995252 6.310000e-59 239.0
53 TraesCS4A01G335000 chr2A 92.169 166 12 1 2588 2752 317953337 317953172 2.940000e-57 233.0
54 TraesCS4A01G335000 chr6B 77.901 181 31 5 2865 3039 30227764 30227587 2.400000e-18 104.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G335000 chr4A 617923650 617928527 4877 True 9009.000000 9009 100.000000 1 4878 1 chr4A.!!$R2 4877
1 TraesCS4A01G335000 chr4A 617933814 617938219 4405 True 590.333333 752 76.677333 938 4339 3 chr4A.!!$R4 3401
2 TraesCS4A01G335000 chr4A 617903388 617912195 8807 True 546.000000 737 79.652333 979 3124 3 chr4A.!!$R3 2145
3 TraesCS4A01G335000 chr5B 701511842 701518471 6629 False 1323.166667 3247 93.136167 1 4558 6 chr5B.!!$F4 4557
4 TraesCS4A01G335000 chr5B 701503817 701506858 3041 False 482.333333 665 79.662000 1032 4216 3 chr5B.!!$F3 3184
5 TraesCS4A01G335000 chr5B 701522508 701532590 10082 False 368.200000 610 79.081400 952 4216 5 chr5B.!!$F5 3264
6 TraesCS4A01G335000 chr5D 549865810 549879966 14156 False 422.333333 684 77.987167 352 4215 6 chr5D.!!$F1 3863
7 TraesCS4A01G335000 chr7A 46255004 46255668 664 False 359.000000 359 76.775000 3510 4175 1 chr7A.!!$F1 665
8 TraesCS4A01G335000 chr3B 818443315 818443972 657 False 230.000000 230 73.574000 3508 4154 1 chr3B.!!$F1 646
9 TraesCS4A01G335000 chr1A 38714212 38715057 845 False 518.000000 518 77.908000 3374 4216 1 chr1A.!!$F1 842
10 TraesCS4A01G335000 chr1B 58557440 58558285 845 False 512.000000 512 77.791000 3374 4216 1 chr1B.!!$F1 842
11 TraesCS4A01G335000 chr6D 468167786 468168585 799 True 353.000000 353 74.845000 3375 4175 1 chr6D.!!$R1 800
12 TraesCS4A01G335000 chrUn 346080738 346081534 796 True 329.000000 329 74.349000 3375 4175 1 chrUn.!!$R1 800
13 TraesCS4A01G335000 chr2D 2048121 2048915 794 False 289.000000 289 73.639000 3359 4154 1 chr2D.!!$F1 795

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
703 842 1.070445 CTGATGCCCAGAGGAGATCAC 59.930 57.143 0.00 0.00 45.78 3.06 F
1695 2630 1.082104 CTCGGTCGCTTTTTGTGCC 60.082 57.895 0.00 0.00 0.00 5.01 F
1710 2645 1.002257 TGCCGATGCATCTTGTGGT 60.002 52.632 23.73 0.00 44.23 4.16 F
2655 7090 1.080705 GTCACGGGTTCGAGTCCTG 60.081 63.158 13.65 13.65 40.11 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1710 2645 2.160721 ATCGCTCCCTCCAGTTAAGA 57.839 50.000 0.00 0.0 0.00 2.10 R
3128 7678 1.461091 TTGCGGAGTCTCTCGGTTGT 61.461 55.000 11.20 0.0 34.09 3.32 R
3244 7854 5.060662 TGAAGACGGTTGAGATAGAGTTG 57.939 43.478 0.00 0.0 0.00 3.16 R
4582 26897 1.153208 CACTCCTGATGCAGAGGCC 60.153 63.158 9.34 0.0 40.13 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 4.592485 ACTTCCTCACATATCCATCGAC 57.408 45.455 0.00 0.00 0.00 4.20
123 124 2.342650 GCCGAGGGATTGCTTTGCA 61.343 57.895 0.00 0.00 36.47 4.08
245 246 5.694006 CACTCTAGGTAGTGCATTATCTTGC 59.306 44.000 7.38 0.00 40.40 4.01
253 319 2.355756 GTGCATTATCTTGCGTCCATGT 59.644 45.455 0.00 0.00 45.77 3.21
277 343 8.766476 TGTTCTGATTTCATCTTAATCTCCTCT 58.234 33.333 0.00 0.00 34.00 3.69
280 346 9.211410 TCTGATTTCATCTTAATCTCCTCTCTT 57.789 33.333 0.00 0.00 34.00 2.85
318 384 5.981315 GGTACTCCCTTTAAACTGCAAAAAC 59.019 40.000 0.00 0.00 0.00 2.43
341 407 3.506067 GCCTTGCATTAAGTTACAGTGGT 59.494 43.478 0.00 0.00 34.45 4.16
343 409 5.460646 CCTTGCATTAAGTTACAGTGGTTG 58.539 41.667 0.00 0.00 34.45 3.77
346 412 6.795098 TGCATTAAGTTACAGTGGTTGTAG 57.205 37.500 0.00 0.00 42.92 2.74
347 413 6.292923 TGCATTAAGTTACAGTGGTTGTAGT 58.707 36.000 0.00 0.00 42.92 2.73
348 414 7.443477 TGCATTAAGTTACAGTGGTTGTAGTA 58.557 34.615 0.00 0.00 42.92 1.82
349 415 7.385752 TGCATTAAGTTACAGTGGTTGTAGTAC 59.614 37.037 0.00 0.00 42.92 2.73
356 422 5.869753 ACAGTGGTTGTAGTACGTAGTAG 57.130 43.478 10.42 0.00 40.67 2.57
390 456 4.274069 GCATGTCAAGCGTACATATTGTG 58.726 43.478 0.00 0.00 35.82 3.33
444 511 4.207955 AGACTCTCCCTTTTTGGTCAAAC 58.792 43.478 0.00 0.00 0.00 2.93
461 528 5.221244 GGTCAAACCAAAGTGCTCAAAGTAT 60.221 40.000 0.00 0.00 38.42 2.12
595 734 8.359875 TCAACCACATATGTCAAAAATATGGT 57.640 30.769 5.07 4.22 40.72 3.55
620 759 3.275143 CACCCAGTACTGTGTTGACAAA 58.725 45.455 21.18 0.00 0.00 2.83
621 760 3.882888 CACCCAGTACTGTGTTGACAAAT 59.117 43.478 21.18 0.00 0.00 2.32
624 763 3.882888 CCAGTACTGTGTTGACAAATGGT 59.117 43.478 21.18 0.00 0.00 3.55
635 774 2.688507 GACAAATGGTCGAGAAGCTGA 58.311 47.619 0.00 0.00 36.65 4.26
636 775 2.670414 GACAAATGGTCGAGAAGCTGAG 59.330 50.000 0.00 0.00 36.65 3.35
637 776 2.037772 ACAAATGGTCGAGAAGCTGAGT 59.962 45.455 0.00 0.00 0.00 3.41
638 777 3.258372 ACAAATGGTCGAGAAGCTGAGTA 59.742 43.478 0.00 0.00 0.00 2.59
639 778 4.245660 CAAATGGTCGAGAAGCTGAGTAA 58.754 43.478 0.00 0.00 0.00 2.24
640 779 4.537135 AATGGTCGAGAAGCTGAGTAAA 57.463 40.909 0.00 0.00 0.00 2.01
641 780 4.744795 ATGGTCGAGAAGCTGAGTAAAT 57.255 40.909 0.00 0.00 0.00 1.40
642 781 5.854010 ATGGTCGAGAAGCTGAGTAAATA 57.146 39.130 0.00 0.00 0.00 1.40
643 782 4.995124 TGGTCGAGAAGCTGAGTAAATAC 58.005 43.478 0.00 0.00 0.00 1.89
644 783 4.461431 TGGTCGAGAAGCTGAGTAAATACA 59.539 41.667 0.00 0.00 0.00 2.29
645 784 4.799428 GGTCGAGAAGCTGAGTAAATACAC 59.201 45.833 0.00 0.00 0.00 2.90
646 785 5.399858 GTCGAGAAGCTGAGTAAATACACA 58.600 41.667 0.00 0.00 0.00 3.72
647 786 5.862323 GTCGAGAAGCTGAGTAAATACACAA 59.138 40.000 0.00 0.00 0.00 3.33
648 787 6.531948 GTCGAGAAGCTGAGTAAATACACAAT 59.468 38.462 0.00 0.00 0.00 2.71
649 788 7.063544 GTCGAGAAGCTGAGTAAATACACAATT 59.936 37.037 0.00 0.00 0.00 2.32
650 789 8.248253 TCGAGAAGCTGAGTAAATACACAATTA 58.752 33.333 0.00 0.00 0.00 1.40
651 790 8.869897 CGAGAAGCTGAGTAAATACACAATTAA 58.130 33.333 0.00 0.00 0.00 1.40
666 805 4.682563 ACAATTAATGTGGGGGTGAATGA 58.317 39.130 0.00 0.00 41.93 2.57
667 806 4.711355 ACAATTAATGTGGGGGTGAATGAG 59.289 41.667 0.00 0.00 41.93 2.90
668 807 4.608170 ATTAATGTGGGGGTGAATGAGT 57.392 40.909 0.00 0.00 0.00 3.41
669 808 5.725551 ATTAATGTGGGGGTGAATGAGTA 57.274 39.130 0.00 0.00 0.00 2.59
670 809 3.652057 AATGTGGGGGTGAATGAGTAG 57.348 47.619 0.00 0.00 0.00 2.57
671 810 2.038863 TGTGGGGGTGAATGAGTAGT 57.961 50.000 0.00 0.00 0.00 2.73
672 811 1.906574 TGTGGGGGTGAATGAGTAGTC 59.093 52.381 0.00 0.00 0.00 2.59
673 812 2.188817 GTGGGGGTGAATGAGTAGTCT 58.811 52.381 0.00 0.00 0.00 3.24
674 813 2.168728 GTGGGGGTGAATGAGTAGTCTC 59.831 54.545 0.00 0.00 40.79 3.36
675 814 1.409427 GGGGGTGAATGAGTAGTCTCG 59.591 57.143 0.00 0.00 43.09 4.04
676 815 2.376109 GGGGTGAATGAGTAGTCTCGA 58.624 52.381 0.00 0.00 43.09 4.04
677 816 2.959707 GGGGTGAATGAGTAGTCTCGAT 59.040 50.000 0.00 0.00 43.09 3.59
678 817 4.142790 GGGGTGAATGAGTAGTCTCGATA 58.857 47.826 0.00 0.00 43.09 2.92
679 818 4.583489 GGGGTGAATGAGTAGTCTCGATAA 59.417 45.833 0.00 0.00 43.09 1.75
680 819 5.278561 GGGGTGAATGAGTAGTCTCGATAAG 60.279 48.000 0.00 0.00 43.09 1.73
681 820 5.531659 GGGTGAATGAGTAGTCTCGATAAGA 59.468 44.000 0.00 0.00 43.09 2.10
682 821 6.039493 GGGTGAATGAGTAGTCTCGATAAGAA 59.961 42.308 0.00 0.00 43.09 2.52
683 822 6.913673 GGTGAATGAGTAGTCTCGATAAGAAC 59.086 42.308 0.00 0.00 43.09 3.01
684 823 7.201750 GGTGAATGAGTAGTCTCGATAAGAACT 60.202 40.741 0.00 0.00 43.09 3.01
685 824 7.642194 GTGAATGAGTAGTCTCGATAAGAACTG 59.358 40.741 0.00 0.00 43.09 3.16
686 825 7.553044 TGAATGAGTAGTCTCGATAAGAACTGA 59.447 37.037 0.00 0.00 43.09 3.41
687 826 8.458573 AATGAGTAGTCTCGATAAGAACTGAT 57.541 34.615 0.00 0.00 43.09 2.90
688 827 7.252965 TGAGTAGTCTCGATAAGAACTGATG 57.747 40.000 0.00 0.00 43.09 3.07
689 828 6.067263 AGTAGTCTCGATAAGAACTGATGC 57.933 41.667 0.00 0.00 35.21 3.91
690 829 4.314740 AGTCTCGATAAGAACTGATGCC 57.685 45.455 0.00 0.00 35.21 4.40
691 830 3.068873 AGTCTCGATAAGAACTGATGCCC 59.931 47.826 0.00 0.00 35.21 5.36
692 831 3.031013 TCTCGATAAGAACTGATGCCCA 58.969 45.455 0.00 0.00 0.00 5.36
694 833 3.031013 TCGATAAGAACTGATGCCCAGA 58.969 45.455 9.80 0.00 45.78 3.86
695 834 3.068732 TCGATAAGAACTGATGCCCAGAG 59.931 47.826 9.80 0.00 45.78 3.35
696 835 3.737850 GATAAGAACTGATGCCCAGAGG 58.262 50.000 9.80 0.00 45.78 3.69
697 836 1.661463 AAGAACTGATGCCCAGAGGA 58.339 50.000 9.80 0.00 45.78 3.71
698 837 1.202330 AGAACTGATGCCCAGAGGAG 58.798 55.000 9.80 0.00 45.78 3.69
699 838 1.198713 GAACTGATGCCCAGAGGAGA 58.801 55.000 9.80 0.00 45.78 3.71
700 839 1.767681 GAACTGATGCCCAGAGGAGAT 59.232 52.381 9.80 0.00 45.78 2.75
701 840 1.422531 ACTGATGCCCAGAGGAGATC 58.577 55.000 9.80 0.00 45.78 2.75
702 841 1.343782 ACTGATGCCCAGAGGAGATCA 60.344 52.381 9.80 0.00 45.78 2.92
703 842 1.070445 CTGATGCCCAGAGGAGATCAC 59.930 57.143 0.00 0.00 45.78 3.06
704 843 1.126488 GATGCCCAGAGGAGATCACA 58.874 55.000 0.00 0.00 33.47 3.58
705 844 1.698532 GATGCCCAGAGGAGATCACAT 59.301 52.381 0.00 0.00 33.47 3.21
706 845 1.588239 TGCCCAGAGGAGATCACATT 58.412 50.000 0.00 0.00 33.47 2.71
707 846 1.211212 TGCCCAGAGGAGATCACATTG 59.789 52.381 0.00 0.00 33.47 2.82
708 847 1.211457 GCCCAGAGGAGATCACATTGT 59.789 52.381 0.00 0.00 33.47 2.71
709 848 2.915349 CCCAGAGGAGATCACATTGTG 58.085 52.381 10.64 10.64 33.47 3.33
710 849 2.238144 CCCAGAGGAGATCACATTGTGT 59.762 50.000 16.06 4.35 32.65 3.72
711 850 3.930114 CCCAGAGGAGATCACATTGTGTG 60.930 52.174 16.06 6.41 42.25 3.82
712 851 6.382286 CCCAGAGGAGATCACATTGTGTGT 62.382 50.000 16.06 6.89 41.83 3.72
713 852 7.779670 CCCAGAGGAGATCACATTGTGTGTT 62.780 48.000 16.06 2.01 41.83 3.32
723 862 4.807443 CACATTGTGTGTTCAATATGGCA 58.193 39.130 8.69 0.00 43.08 4.92
724 863 5.228665 CACATTGTGTGTTCAATATGGCAA 58.771 37.500 8.69 0.00 43.08 4.52
725 864 5.695363 CACATTGTGTGTTCAATATGGCAAA 59.305 36.000 8.69 0.00 43.08 3.68
726 865 5.695816 ACATTGTGTGTTCAATATGGCAAAC 59.304 36.000 0.00 0.00 38.01 2.93
727 866 5.528043 TTGTGTGTTCAATATGGCAAACT 57.472 34.783 0.00 0.00 0.00 2.66
728 867 6.641169 TTGTGTGTTCAATATGGCAAACTA 57.359 33.333 0.00 0.00 0.00 2.24
729 868 6.252967 TGTGTGTTCAATATGGCAAACTAG 57.747 37.500 0.00 0.00 0.00 2.57
730 869 5.767665 TGTGTGTTCAATATGGCAAACTAGT 59.232 36.000 0.00 0.00 0.00 2.57
731 870 6.072728 TGTGTGTTCAATATGGCAAACTAGTC 60.073 38.462 0.00 0.00 0.00 2.59
732 871 6.000840 TGTGTTCAATATGGCAAACTAGTCA 58.999 36.000 0.00 0.00 0.00 3.41
733 872 6.488344 TGTGTTCAATATGGCAAACTAGTCAA 59.512 34.615 0.00 0.00 0.00 3.18
734 873 7.176515 TGTGTTCAATATGGCAAACTAGTCAAT 59.823 33.333 0.00 0.00 0.00 2.57
735 874 7.698130 GTGTTCAATATGGCAAACTAGTCAATC 59.302 37.037 0.00 0.00 0.00 2.67
736 875 7.392953 TGTTCAATATGGCAAACTAGTCAATCA 59.607 33.333 0.00 0.00 0.00 2.57
737 876 7.558161 TCAATATGGCAAACTAGTCAATCAG 57.442 36.000 0.00 0.00 0.00 2.90
738 877 7.337938 TCAATATGGCAAACTAGTCAATCAGA 58.662 34.615 0.00 0.00 0.00 3.27
739 878 7.994911 TCAATATGGCAAACTAGTCAATCAGAT 59.005 33.333 0.00 0.00 0.00 2.90
740 879 9.276590 CAATATGGCAAACTAGTCAATCAGATA 57.723 33.333 0.00 0.00 0.00 1.98
741 880 9.499479 AATATGGCAAACTAGTCAATCAGATAG 57.501 33.333 0.00 0.00 0.00 2.08
742 881 6.299805 TGGCAAACTAGTCAATCAGATAGT 57.700 37.500 0.00 0.00 0.00 2.12
743 882 7.418337 TGGCAAACTAGTCAATCAGATAGTA 57.582 36.000 0.00 0.00 0.00 1.82
744 883 8.023021 TGGCAAACTAGTCAATCAGATAGTAT 57.977 34.615 0.00 0.00 0.00 2.12
745 884 7.928167 TGGCAAACTAGTCAATCAGATAGTATG 59.072 37.037 0.00 0.00 0.00 2.39
746 885 7.928706 GGCAAACTAGTCAATCAGATAGTATGT 59.071 37.037 0.00 0.00 0.00 2.29
747 886 8.973378 GCAAACTAGTCAATCAGATAGTATGTC 58.027 37.037 0.00 0.00 0.00 3.06
748 887 9.469807 CAAACTAGTCAATCAGATAGTATGTCC 57.530 37.037 0.00 0.00 0.00 4.02
749 888 7.768807 ACTAGTCAATCAGATAGTATGTCCC 57.231 40.000 0.00 0.00 0.00 4.46
750 889 7.531317 ACTAGTCAATCAGATAGTATGTCCCT 58.469 38.462 0.00 0.00 0.00 4.20
751 890 8.007742 ACTAGTCAATCAGATAGTATGTCCCTT 58.992 37.037 0.00 0.00 0.00 3.95
752 891 7.060383 AGTCAATCAGATAGTATGTCCCTTG 57.940 40.000 0.00 0.00 0.00 3.61
753 892 6.841229 AGTCAATCAGATAGTATGTCCCTTGA 59.159 38.462 0.00 0.00 0.00 3.02
760 899 6.933521 CAGATAGTATGTCCCTTGATGGAAAG 59.066 42.308 0.00 0.00 35.80 2.62
777 916 5.819991 TGGAAAGCTTGAAATATGACTCCT 58.180 37.500 0.00 0.00 0.00 3.69
836 977 3.875134 TCTATTGCTGTGTGATGCATCAG 59.125 43.478 29.38 18.21 39.07 2.90
837 978 1.170442 TTGCTGTGTGATGCATCAGG 58.830 50.000 29.38 19.00 39.07 3.86
847 988 4.197750 GTGATGCATCAGGTCTTCATTCT 58.802 43.478 29.38 0.00 37.51 2.40
848 989 4.639310 GTGATGCATCAGGTCTTCATTCTT 59.361 41.667 29.38 0.00 37.51 2.52
910 1051 1.853963 ACTGGTAGCTACCCTCACTG 58.146 55.000 34.76 20.71 45.87 3.66
1120 1269 6.527023 GCAAGACATCACAAATCATTTCTCTG 59.473 38.462 0.00 0.00 0.00 3.35
1434 1607 5.211174 AGAATATAGTACGGTTTCTGGGC 57.789 43.478 0.00 0.00 0.00 5.36
1534 1707 7.028962 GCTCTGTTTTGAATATGTATGCAACA 58.971 34.615 0.00 0.00 43.86 3.33
1689 2624 3.705043 ATACGTATCTCGGTCGCTTTT 57.295 42.857 1.14 0.00 44.69 2.27
1695 2630 1.082104 CTCGGTCGCTTTTTGTGCC 60.082 57.895 0.00 0.00 0.00 5.01
1710 2645 1.002257 TGCCGATGCATCTTGTGGT 60.002 52.632 23.73 0.00 44.23 4.16
1824 2759 4.892433 AGCCTGCTAACATATTGCTAGAG 58.108 43.478 0.00 0.00 0.00 2.43
1826 2761 3.999663 CCTGCTAACATATTGCTAGAGGC 59.000 47.826 0.00 0.00 42.22 4.70
1837 2772 2.682594 TGCTAGAGGCTCACATGGTAT 58.317 47.619 18.26 0.00 42.39 2.73
1974 2938 7.804614 TTTTATGCACGGCTTAATTACTTTG 57.195 32.000 0.00 0.00 30.43 2.77
1975 2939 6.503589 TTATGCACGGCTTAATTACTTTGT 57.496 33.333 0.00 0.00 0.00 2.83
2128 3092 7.451877 TCTTGAAGATACTAACAGGAGTGAAGT 59.548 37.037 0.00 0.00 0.00 3.01
2154 3118 2.486472 TCGAAGAGGAGACCGTAAGT 57.514 50.000 0.00 0.00 0.00 2.24
2311 6396 3.194329 TGAGTTGTGAGGCATGAGTCTAG 59.806 47.826 0.00 0.00 0.00 2.43
2394 6595 8.729529 AAACATATTCATACGATGTAGTCTCG 57.270 34.615 0.00 0.00 41.77 4.04
2484 6722 6.469782 AAGATAACCGATGCAAATTCCATT 57.530 33.333 0.00 0.00 0.00 3.16
2573 6849 9.883142 GTGGAATGAAATTAAATGGTTCCAATA 57.117 29.630 5.59 0.00 43.49 1.90
2587 7022 8.660295 ATGGTTCCAATATAAATCATCATGCT 57.340 30.769 0.00 0.00 0.00 3.79
2611 7046 2.980233 GAGCCTTGGCGCAACAGT 60.980 61.111 10.83 0.00 0.00 3.55
2655 7090 1.080705 GTCACGGGTTCGAGTCCTG 60.081 63.158 13.65 13.65 40.11 3.86
2656 7091 1.228337 TCACGGGTTCGAGTCCTGA 60.228 57.895 19.72 11.83 40.11 3.86
2680 7115 3.754965 ACAGCCTCTTGCAGAAATGTAA 58.245 40.909 0.00 0.00 44.83 2.41
2687 7122 5.707298 CCTCTTGCAGAAATGTAAGGAAAGA 59.293 40.000 6.30 0.00 33.32 2.52
2692 7127 4.670221 GCAGAAATGTAAGGAAAGACTGCG 60.670 45.833 0.00 0.00 38.64 5.18
2747 7182 1.907739 GGGAGCTACATGCACTGGA 59.092 57.895 0.00 0.00 45.94 3.86
2984 7423 4.785346 ATAGAATGCATGAACCTGGACT 57.215 40.909 0.00 0.00 0.00 3.85
3039 7478 4.580167 TGATAGGCTTGACAATATGGCAAC 59.420 41.667 0.00 0.00 41.15 4.17
3128 7678 2.978156 ACAATTGGGAGAAAGGCTCA 57.022 45.000 10.83 0.00 45.81 4.26
3302 7912 7.768120 ACAATTTGGACATCTTTAACAGCAAAA 59.232 29.630 0.78 0.00 0.00 2.44
3808 15966 6.106673 ACTCTTGGATGATTACTTTACACCG 58.893 40.000 0.00 0.00 0.00 4.94
3852 16010 1.407437 GGGGTTGATTGCGAGAGATGT 60.407 52.381 0.00 0.00 0.00 3.06
3866 17128 3.957497 GAGAGATGTGGATCCAGTGTACT 59.043 47.826 16.81 12.23 0.00 2.73
3867 17129 4.357325 AGAGATGTGGATCCAGTGTACTT 58.643 43.478 16.81 0.59 0.00 2.24
3868 17130 5.519808 AGAGATGTGGATCCAGTGTACTTA 58.480 41.667 16.81 0.00 0.00 2.24
3869 17131 5.958380 AGAGATGTGGATCCAGTGTACTTAA 59.042 40.000 16.81 0.00 0.00 1.85
3997 18348 0.622665 AAGGAGGCCTGTCATTCTGG 59.377 55.000 12.00 0.00 38.06 3.86
4034 19456 4.279420 GCAAGAAGTTTCCTTGAGGTTCAT 59.721 41.667 8.17 0.00 42.57 2.57
4199 25383 1.136305 GTGGCACGCCTTCTCATACTA 59.864 52.381 9.92 0.00 36.94 1.82
4438 25655 4.196193 TCGTTTCCTGTTCAATGAACTGT 58.804 39.130 24.30 0.00 42.39 3.55
4482 25699 0.613260 TGCTTGGCGTGAAGGACTAT 59.387 50.000 0.00 0.00 0.00 2.12
4496 25714 5.009610 TGAAGGACTATGGTGTTTGCTTTTC 59.990 40.000 0.00 0.00 0.00 2.29
4498 25716 4.892934 AGGACTATGGTGTTTGCTTTTCAA 59.107 37.500 0.00 0.00 0.00 2.69
4502 25720 7.054491 ACTATGGTGTTTGCTTTTCAAGAAT 57.946 32.000 0.00 0.00 35.84 2.40
4568 26883 9.703892 ATGATGTTGTCGATTTTTATTTGGAAA 57.296 25.926 0.00 0.00 0.00 3.13
4569 26884 9.534565 TGATGTTGTCGATTTTTATTTGGAAAA 57.465 25.926 0.00 0.00 0.00 2.29
4571 26886 8.359060 TGTTGTCGATTTTTATTTGGAAAAGG 57.641 30.769 0.00 0.00 30.30 3.11
4572 26887 7.439655 TGTTGTCGATTTTTATTTGGAAAAGGG 59.560 33.333 0.00 0.00 30.30 3.95
4573 26888 6.459923 TGTCGATTTTTATTTGGAAAAGGGG 58.540 36.000 0.00 0.00 30.30 4.79
4574 26889 5.872617 GTCGATTTTTATTTGGAAAAGGGGG 59.127 40.000 0.00 0.00 30.30 5.40
4576 26891 5.872617 CGATTTTTATTTGGAAAAGGGGGAC 59.127 40.000 0.00 0.00 30.30 4.46
4579 26894 2.623418 ATTTGGAAAAGGGGGACTCC 57.377 50.000 0.00 0.00 0.00 3.85
4596 26911 4.559063 CCCGGCCTCTGCATCAGG 62.559 72.222 0.00 7.38 40.13 3.86
4599 26914 2.729479 CGGCCTCTGCATCAGGAGT 61.729 63.158 14.75 0.00 40.13 3.85
4600 26915 1.153208 GGCCTCTGCATCAGGAGTG 60.153 63.158 14.75 1.56 40.13 3.51
4602 26917 0.469070 GCCTCTGCATCAGGAGTGAT 59.531 55.000 14.75 0.00 44.85 3.06
4611 26926 2.609427 TCAGGAGTGATGCATACAGC 57.391 50.000 0.00 0.00 45.96 4.40
4613 26928 1.134310 CAGGAGTGATGCATACAGCCA 60.134 52.381 0.00 0.00 44.83 4.75
4615 26930 2.149578 GGAGTGATGCATACAGCCATC 58.850 52.381 0.00 0.00 44.83 3.51
4617 26932 3.474600 GAGTGATGCATACAGCCATCTT 58.525 45.455 0.00 0.00 44.83 2.40
4618 26933 4.503817 GGAGTGATGCATACAGCCATCTTA 60.504 45.833 0.00 0.00 44.83 2.10
4619 26934 5.238624 AGTGATGCATACAGCCATCTTAT 57.761 39.130 0.00 0.00 44.83 1.73
4620 26935 5.628130 AGTGATGCATACAGCCATCTTATT 58.372 37.500 0.00 0.00 44.83 1.40
4621 26936 6.772605 AGTGATGCATACAGCCATCTTATTA 58.227 36.000 0.00 0.00 44.83 0.98
4626 26941 8.640063 ATGCATACAGCCATCTTATTAATGAA 57.360 30.769 0.00 0.00 44.83 2.57
4627 26942 8.102800 TGCATACAGCCATCTTATTAATGAAG 57.897 34.615 0.00 0.00 44.83 3.02
4628 26943 7.025963 GCATACAGCCATCTTATTAATGAAGC 58.974 38.462 0.00 0.00 37.23 3.86
4629 26944 7.308770 GCATACAGCCATCTTATTAATGAAGCA 60.309 37.037 0.00 0.00 37.23 3.91
4631 26946 6.799512 ACAGCCATCTTATTAATGAAGCAAC 58.200 36.000 0.00 0.00 0.00 4.17
4632 26947 6.377996 ACAGCCATCTTATTAATGAAGCAACA 59.622 34.615 0.00 0.00 0.00 3.33
4633 26948 7.093814 ACAGCCATCTTATTAATGAAGCAACAA 60.094 33.333 0.00 0.00 0.00 2.83
4634 26949 7.760794 CAGCCATCTTATTAATGAAGCAACAAA 59.239 33.333 0.00 0.00 0.00 2.83
4635 26950 8.313292 AGCCATCTTATTAATGAAGCAACAAAA 58.687 29.630 0.00 0.00 0.00 2.44
4636 26951 8.934825 GCCATCTTATTAATGAAGCAACAAAAA 58.065 29.630 0.00 0.00 0.00 1.94
4640 26955 8.977505 TCTTATTAATGAAGCAACAAAAAGTGC 58.022 29.630 0.00 0.00 0.00 4.40
4641 26956 8.654230 TTATTAATGAAGCAACAAAAAGTGCA 57.346 26.923 0.00 0.00 0.00 4.57
4642 26957 7.733402 ATTAATGAAGCAACAAAAAGTGCAT 57.267 28.000 0.00 0.00 0.00 3.96
4644 26959 6.529463 AATGAAGCAACAAAAAGTGCATAC 57.471 33.333 0.00 0.00 0.00 2.39
4645 26960 5.003692 TGAAGCAACAAAAAGTGCATACA 57.996 34.783 0.00 0.00 0.00 2.29
4648 26963 5.971895 AGCAACAAAAAGTGCATACAAAG 57.028 34.783 0.00 0.00 0.00 2.77
4651 26966 6.035975 AGCAACAAAAAGTGCATACAAAGTTC 59.964 34.615 0.00 0.00 0.00 3.01
4652 26967 6.704819 CAACAAAAAGTGCATACAAAGTTCC 58.295 36.000 0.00 0.00 0.00 3.62
4654 26969 6.581712 ACAAAAAGTGCATACAAAGTTCCAT 58.418 32.000 0.00 0.00 0.00 3.41
4657 26972 7.524717 AAAAGTGCATACAAAGTTCCATAGT 57.475 32.000 0.00 0.00 0.00 2.12
4658 26973 6.743575 AAGTGCATACAAAGTTCCATAGTC 57.256 37.500 0.00 0.00 0.00 2.59
4659 26974 6.054860 AGTGCATACAAAGTTCCATAGTCT 57.945 37.500 0.00 0.00 0.00 3.24
4660 26975 6.109359 AGTGCATACAAAGTTCCATAGTCTC 58.891 40.000 0.00 0.00 0.00 3.36
4662 26977 7.124298 AGTGCATACAAAGTTCCATAGTCTCTA 59.876 37.037 0.00 0.00 0.00 2.43
4663 26978 7.764443 GTGCATACAAAGTTCCATAGTCTCTAA 59.236 37.037 0.00 0.00 0.00 2.10
4664 26979 7.764443 TGCATACAAAGTTCCATAGTCTCTAAC 59.236 37.037 0.00 0.00 0.00 2.34
4665 26980 7.982354 GCATACAAAGTTCCATAGTCTCTAACT 59.018 37.037 0.00 0.00 42.33 2.24
4666 26981 9.307121 CATACAAAGTTCCATAGTCTCTAACTG 57.693 37.037 0.00 0.00 39.11 3.16
4682 27457 9.730420 GTCTCTAACTGAAAACAATAAAAAGCA 57.270 29.630 0.00 0.00 0.00 3.91
4683 27458 9.950680 TCTCTAACTGAAAACAATAAAAAGCAG 57.049 29.630 0.00 0.00 0.00 4.24
4684 27459 8.574196 TCTAACTGAAAACAATAAAAAGCAGC 57.426 30.769 0.00 0.00 0.00 5.25
4685 27460 6.603237 AACTGAAAACAATAAAAAGCAGCC 57.397 33.333 0.00 0.00 0.00 4.85
4688 27463 4.813697 TGAAAACAATAAAAAGCAGCCCAC 59.186 37.500 0.00 0.00 0.00 4.61
4691 27466 2.697751 ACAATAAAAAGCAGCCCACACA 59.302 40.909 0.00 0.00 0.00 3.72
4692 27467 3.243839 ACAATAAAAAGCAGCCCACACAG 60.244 43.478 0.00 0.00 0.00 3.66
4693 27468 2.356665 TAAAAAGCAGCCCACACAGA 57.643 45.000 0.00 0.00 0.00 3.41
4694 27469 1.035139 AAAAAGCAGCCCACACAGAG 58.965 50.000 0.00 0.00 0.00 3.35
4695 27470 1.458639 AAAAGCAGCCCACACAGAGC 61.459 55.000 0.00 0.00 0.00 4.09
4696 27471 4.694233 AGCAGCCCACACAGAGCG 62.694 66.667 0.00 0.00 0.00 5.03
4698 27473 4.994471 CAGCCCACACAGAGCGCA 62.994 66.667 11.47 0.00 0.00 6.09
4699 27474 4.694233 AGCCCACACAGAGCGCAG 62.694 66.667 11.47 0.64 0.00 5.18
4700 27475 4.687215 GCCCACACAGAGCGCAGA 62.687 66.667 11.47 0.00 0.00 4.26
4701 27476 2.031012 CCCACACAGAGCGCAGAA 59.969 61.111 11.47 0.00 0.00 3.02
4702 27477 2.031516 CCCACACAGAGCGCAGAAG 61.032 63.158 11.47 0.00 0.00 2.85
4703 27478 2.031516 CCACACAGAGCGCAGAAGG 61.032 63.158 11.47 0.00 0.00 3.46
4705 27480 2.047465 CACAGAGCGCAGAAGGCT 60.047 61.111 11.47 0.00 45.00 4.58
4707 27482 0.805322 CACAGAGCGCAGAAGGCTAG 60.805 60.000 11.47 0.00 41.72 3.42
4708 27483 0.967887 ACAGAGCGCAGAAGGCTAGA 60.968 55.000 11.47 0.00 41.72 2.43
4709 27484 0.174389 CAGAGCGCAGAAGGCTAGAA 59.826 55.000 11.47 0.00 41.72 2.10
4710 27485 0.898320 AGAGCGCAGAAGGCTAGAAA 59.102 50.000 11.47 0.00 41.72 2.52
4711 27486 1.003108 GAGCGCAGAAGGCTAGAAAC 58.997 55.000 11.47 0.00 41.72 2.78
4712 27487 0.321671 AGCGCAGAAGGCTAGAAACA 59.678 50.000 11.47 0.00 39.39 2.83
4713 27488 0.444260 GCGCAGAAGGCTAGAAACAC 59.556 55.000 0.30 0.00 41.67 3.32
4714 27489 1.941668 GCGCAGAAGGCTAGAAACACT 60.942 52.381 0.30 0.00 41.67 3.55
4716 27491 3.585862 CGCAGAAGGCTAGAAACACTAA 58.414 45.455 0.00 0.00 41.67 2.24
4717 27492 3.368236 CGCAGAAGGCTAGAAACACTAAC 59.632 47.826 0.00 0.00 41.67 2.34
4719 27494 5.621555 CGCAGAAGGCTAGAAACACTAACTA 60.622 44.000 0.00 0.00 41.67 2.24
4720 27495 5.808030 GCAGAAGGCTAGAAACACTAACTAG 59.192 44.000 0.00 0.00 40.25 2.57
4730 27505 7.923414 AGAAACACTAACTAGCCAATAAAGG 57.077 36.000 0.00 0.00 0.00 3.11
4732 27507 7.824779 AGAAACACTAACTAGCCAATAAAGGAG 59.175 37.037 0.00 0.00 0.00 3.69
4733 27508 5.429130 ACACTAACTAGCCAATAAAGGAGC 58.571 41.667 0.00 0.00 0.00 4.70
4736 27511 3.283259 ACTAGCCAATAAAGGAGCCAC 57.717 47.619 0.00 0.00 0.00 5.01
4737 27512 2.576191 ACTAGCCAATAAAGGAGCCACA 59.424 45.455 0.00 0.00 0.00 4.17
4738 27513 2.603075 AGCCAATAAAGGAGCCACAA 57.397 45.000 0.00 0.00 0.00 3.33
4741 27516 1.472480 CCAATAAAGGAGCCACAACCG 59.528 52.381 0.00 0.00 0.00 4.44
4742 27517 1.472480 CAATAAAGGAGCCACAACCGG 59.528 52.381 0.00 0.00 0.00 5.28
4750 27525 2.272146 CCACAACCGGCTGGCTAT 59.728 61.111 12.89 0.00 39.70 2.97
4751 27526 1.524961 CCACAACCGGCTGGCTATA 59.475 57.895 12.89 0.00 39.70 1.31
4752 27527 0.108585 CCACAACCGGCTGGCTATAT 59.891 55.000 12.89 0.00 39.70 0.86
4753 27528 1.346395 CCACAACCGGCTGGCTATATA 59.654 52.381 12.89 0.00 39.70 0.86
4757 27532 4.159693 CACAACCGGCTGGCTATATAGATA 59.840 45.833 12.89 0.46 39.70 1.98
4758 27533 4.402793 ACAACCGGCTGGCTATATAGATAG 59.597 45.833 12.89 10.83 39.70 2.08
4759 27534 3.567397 ACCGGCTGGCTATATAGATAGG 58.433 50.000 12.89 9.13 39.70 2.57
4760 27535 2.894126 CCGGCTGGCTATATAGATAGGG 59.106 54.545 14.16 4.75 36.32 3.53
4761 27536 3.436615 CCGGCTGGCTATATAGATAGGGA 60.437 52.174 14.16 0.00 36.32 4.20
4763 27538 4.649674 CGGCTGGCTATATAGATAGGGAAA 59.350 45.833 14.16 0.00 36.32 3.13
4767 27542 7.344871 GGCTGGCTATATAGATAGGGAAACTAA 59.655 40.741 14.16 0.00 36.32 2.24
4771 27546 9.549078 GGCTATATAGATAGGGAAACTAATTGC 57.451 37.037 14.16 0.00 36.32 3.56
4783 27558 8.563123 GGGAAACTAATTGCCTATCCTATTAC 57.437 38.462 0.00 0.00 45.56 1.89
4784 27559 8.161425 GGGAAACTAATTGCCTATCCTATTACA 58.839 37.037 0.00 0.00 45.56 2.41
4785 27560 9.740710 GGAAACTAATTGCCTATCCTATTACAT 57.259 33.333 0.00 0.00 0.00 2.29
4788 27563 9.726438 AACTAATTGCCTATCCTATTACATGAC 57.274 33.333 0.00 0.00 0.00 3.06
4791 27566 3.056107 TGCCTATCCTATTACATGACCGC 60.056 47.826 0.00 0.00 0.00 5.68
4793 27568 3.513912 CCTATCCTATTACATGACCGCCA 59.486 47.826 0.00 0.00 0.00 5.69
4805 27580 2.675075 CCGCCATCCAAACCGGTT 60.675 61.111 15.86 15.86 36.18 4.44
4807 27582 1.969064 CGCCATCCAAACCGGTTGA 60.969 57.895 23.08 15.50 39.87 3.18
4812 27587 3.056465 GCCATCCAAACCGGTTGAAAATA 60.056 43.478 23.08 4.03 39.87 1.40
4813 27588 4.382577 GCCATCCAAACCGGTTGAAAATAT 60.383 41.667 23.08 6.33 39.87 1.28
4814 27589 5.348164 CCATCCAAACCGGTTGAAAATATC 58.652 41.667 23.08 0.00 39.87 1.63
4815 27590 5.348164 CATCCAAACCGGTTGAAAATATCC 58.652 41.667 23.08 0.00 39.87 2.59
4816 27591 3.764972 TCCAAACCGGTTGAAAATATCCC 59.235 43.478 23.08 0.00 39.87 3.85
4818 27593 3.353370 AACCGGTTGAAAATATCCCGA 57.647 42.857 21.56 0.00 41.08 5.14
4819 27594 2.914059 ACCGGTTGAAAATATCCCGAG 58.086 47.619 0.00 0.00 41.08 4.63
4820 27595 1.602377 CCGGTTGAAAATATCCCGAGC 59.398 52.381 0.00 0.00 41.08 5.03
4824 27599 3.181490 GGTTGAAAATATCCCGAGCAACC 60.181 47.826 0.00 0.00 44.50 3.77
4826 27601 3.897239 TGAAAATATCCCGAGCAACCAT 58.103 40.909 0.00 0.00 0.00 3.55
4828 27603 3.864789 AAATATCCCGAGCAACCATCT 57.135 42.857 0.00 0.00 0.00 2.90
4830 27605 1.048601 TATCCCGAGCAACCATCTCC 58.951 55.000 0.00 0.00 0.00 3.71
4831 27606 1.700042 ATCCCGAGCAACCATCTCCC 61.700 60.000 0.00 0.00 0.00 4.30
4832 27607 2.669133 CCCGAGCAACCATCTCCCA 61.669 63.158 0.00 0.00 0.00 4.37
4833 27608 1.450312 CCGAGCAACCATCTCCCAC 60.450 63.158 0.00 0.00 0.00 4.61
4835 27610 1.450312 GAGCAACCATCTCCCACCG 60.450 63.158 0.00 0.00 0.00 4.94
4836 27611 2.438434 GCAACCATCTCCCACCGG 60.438 66.667 0.00 0.00 0.00 5.28
4837 27612 2.272146 CAACCATCTCCCACCGGG 59.728 66.667 6.32 0.00 46.11 5.73
4840 27615 0.981277 AACCATCTCCCACCGGGTAG 60.981 60.000 6.32 0.00 44.74 3.18
4843 27618 1.075450 ATCTCCCACCGGGTAGACC 60.075 63.158 6.32 0.00 44.74 3.85
4858 27633 3.308188 GGTAGACCCAGTAACCAAATGCT 60.308 47.826 0.00 0.00 32.04 3.79
4859 27634 3.073274 AGACCCAGTAACCAAATGCTC 57.927 47.619 0.00 0.00 0.00 4.26
4861 27636 1.272480 ACCCAGTAACCAAATGCTCCC 60.272 52.381 0.00 0.00 0.00 4.30
4863 27638 2.094675 CCAGTAACCAAATGCTCCCTG 58.905 52.381 0.00 0.00 0.00 4.45
4864 27639 2.094675 CAGTAACCAAATGCTCCCTGG 58.905 52.381 0.00 0.00 36.24 4.45
4865 27640 0.817654 GTAACCAAATGCTCCCTGGC 59.182 55.000 0.00 0.00 33.19 4.85
4867 27642 2.097978 AACCAAATGCTCCCTGGCCT 62.098 55.000 3.32 0.00 33.19 5.19
4868 27643 1.755783 CCAAATGCTCCCTGGCCTC 60.756 63.158 3.32 0.00 0.00 4.70
4869 27644 1.755783 CAAATGCTCCCTGGCCTCC 60.756 63.158 3.32 0.00 0.00 4.30
4870 27645 2.240918 AAATGCTCCCTGGCCTCCA 61.241 57.895 3.32 0.00 0.00 3.86
4871 27646 1.587522 AAATGCTCCCTGGCCTCCAT 61.588 55.000 3.32 0.00 30.82 3.41
4872 27647 2.004408 AATGCTCCCTGGCCTCCATC 62.004 60.000 3.32 0.00 30.82 3.51
4873 27648 4.247380 GCTCCCTGGCCTCCATCG 62.247 72.222 3.32 0.00 30.82 3.84
4875 27650 4.088351 TCCCTGGCCTCCATCGGA 62.088 66.667 3.32 0.00 31.87 4.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
123 124 2.819608 CCAAAGACCGGTTGATGAATGT 59.180 45.455 9.42 0.00 0.00 2.71
182 183 2.020720 TCAGATCGAGAAGAGACTGGC 58.979 52.381 0.00 0.00 37.60 4.85
221 222 7.493117 CGCAAGATAATGCACTACCTAGAGTG 61.493 46.154 7.13 7.13 46.76 3.51
243 244 2.777094 TGAAATCAGAACATGGACGCA 58.223 42.857 0.00 0.00 0.00 5.24
318 384 3.426159 CCACTGTAACTTAATGCAAGGCG 60.426 47.826 0.00 0.00 38.70 5.52
341 407 8.400947 CAAGGAATTAGCTACTACGTACTACAA 58.599 37.037 0.00 0.00 0.00 2.41
343 409 7.358830 CCAAGGAATTAGCTACTACGTACTAC 58.641 42.308 0.00 0.00 0.00 2.73
346 412 4.981054 GCCAAGGAATTAGCTACTACGTAC 59.019 45.833 0.00 0.00 0.00 3.67
347 413 4.646040 TGCCAAGGAATTAGCTACTACGTA 59.354 41.667 0.00 0.00 0.00 3.57
348 414 3.449737 TGCCAAGGAATTAGCTACTACGT 59.550 43.478 0.00 0.00 0.00 3.57
349 415 4.054780 TGCCAAGGAATTAGCTACTACG 57.945 45.455 0.00 0.00 0.00 3.51
356 422 3.736126 GCTTGACATGCCAAGGAATTAGC 60.736 47.826 21.37 4.04 42.73 3.09
390 456 2.952310 AGCTTCTCCAACAGGTGTTTTC 59.048 45.455 0.00 0.00 35.83 2.29
461 528 2.659063 CCCTGGTGTCATCGCAGGA 61.659 63.158 0.00 0.00 35.15 3.86
581 720 4.901849 TGGGTGGAAACCATATTTTTGACA 59.098 37.500 0.00 0.00 35.28 3.58
620 759 4.744795 ATTTACTCAGCTTCTCGACCAT 57.255 40.909 0.00 0.00 0.00 3.55
621 760 4.461431 TGTATTTACTCAGCTTCTCGACCA 59.539 41.667 0.00 0.00 0.00 4.02
624 763 5.638596 TGTGTATTTACTCAGCTTCTCGA 57.361 39.130 0.00 0.00 0.00 4.04
625 764 6.893958 ATTGTGTATTTACTCAGCTTCTCG 57.106 37.500 0.00 0.00 32.20 4.04
644 783 4.682563 TCATTCACCCCCACATTAATTGT 58.317 39.130 0.00 0.00 39.91 2.71
645 784 4.711355 ACTCATTCACCCCCACATTAATTG 59.289 41.667 0.00 0.00 0.00 2.32
646 785 4.946646 ACTCATTCACCCCCACATTAATT 58.053 39.130 0.00 0.00 0.00 1.40
647 786 4.608170 ACTCATTCACCCCCACATTAAT 57.392 40.909 0.00 0.00 0.00 1.40
648 787 4.538490 ACTACTCATTCACCCCCACATTAA 59.462 41.667 0.00 0.00 0.00 1.40
649 788 4.108570 ACTACTCATTCACCCCCACATTA 58.891 43.478 0.00 0.00 0.00 1.90
650 789 2.919602 ACTACTCATTCACCCCCACATT 59.080 45.455 0.00 0.00 0.00 2.71
651 790 2.505819 GACTACTCATTCACCCCCACAT 59.494 50.000 0.00 0.00 0.00 3.21
652 791 1.906574 GACTACTCATTCACCCCCACA 59.093 52.381 0.00 0.00 0.00 4.17
653 792 2.168728 GAGACTACTCATTCACCCCCAC 59.831 54.545 0.00 0.00 42.21 4.61
654 793 2.467880 GAGACTACTCATTCACCCCCA 58.532 52.381 0.00 0.00 42.21 4.96
655 794 1.409427 CGAGACTACTCATTCACCCCC 59.591 57.143 0.00 0.00 42.72 5.40
656 795 2.376109 TCGAGACTACTCATTCACCCC 58.624 52.381 0.00 0.00 42.72 4.95
657 796 5.531659 TCTTATCGAGACTACTCATTCACCC 59.468 44.000 0.00 0.00 42.72 4.61
658 797 6.621316 TCTTATCGAGACTACTCATTCACC 57.379 41.667 0.00 0.00 42.72 4.02
659 798 7.642194 CAGTTCTTATCGAGACTACTCATTCAC 59.358 40.741 0.00 0.00 42.72 3.18
660 799 7.553044 TCAGTTCTTATCGAGACTACTCATTCA 59.447 37.037 0.00 0.00 42.72 2.57
661 800 7.921787 TCAGTTCTTATCGAGACTACTCATTC 58.078 38.462 0.00 0.00 42.72 2.67
662 801 7.867305 TCAGTTCTTATCGAGACTACTCATT 57.133 36.000 0.00 0.00 42.72 2.57
663 802 7.521423 GCATCAGTTCTTATCGAGACTACTCAT 60.521 40.741 0.00 0.00 42.72 2.90
664 803 6.238511 GCATCAGTTCTTATCGAGACTACTCA 60.239 42.308 0.00 0.00 42.72 3.41
665 804 6.140110 GCATCAGTTCTTATCGAGACTACTC 58.860 44.000 0.00 0.00 39.54 2.59
666 805 5.009210 GGCATCAGTTCTTATCGAGACTACT 59.991 44.000 0.00 0.00 33.02 2.57
667 806 5.216648 GGCATCAGTTCTTATCGAGACTAC 58.783 45.833 0.00 0.00 33.02 2.73
668 807 4.278669 GGGCATCAGTTCTTATCGAGACTA 59.721 45.833 0.00 0.00 33.02 2.59
669 808 3.068873 GGGCATCAGTTCTTATCGAGACT 59.931 47.826 0.00 0.00 33.02 3.24
670 809 3.181475 TGGGCATCAGTTCTTATCGAGAC 60.181 47.826 0.00 0.00 33.02 3.36
671 810 3.031013 TGGGCATCAGTTCTTATCGAGA 58.969 45.455 0.00 0.00 0.00 4.04
672 811 3.068732 TCTGGGCATCAGTTCTTATCGAG 59.931 47.826 6.26 0.00 43.76 4.04
673 812 3.031013 TCTGGGCATCAGTTCTTATCGA 58.969 45.455 6.26 0.00 43.76 3.59
674 813 3.388308 CTCTGGGCATCAGTTCTTATCG 58.612 50.000 6.26 0.00 43.76 2.92
675 814 3.389329 TCCTCTGGGCATCAGTTCTTATC 59.611 47.826 6.26 0.00 43.76 1.75
676 815 3.387962 TCCTCTGGGCATCAGTTCTTAT 58.612 45.455 6.26 0.00 43.76 1.73
677 816 2.768527 CTCCTCTGGGCATCAGTTCTTA 59.231 50.000 6.26 0.00 43.76 2.10
678 817 1.558756 CTCCTCTGGGCATCAGTTCTT 59.441 52.381 6.26 0.00 43.76 2.52
679 818 1.202330 CTCCTCTGGGCATCAGTTCT 58.798 55.000 6.26 0.00 43.76 3.01
680 819 1.198713 TCTCCTCTGGGCATCAGTTC 58.801 55.000 6.26 0.00 43.76 3.01
681 820 1.767681 GATCTCCTCTGGGCATCAGTT 59.232 52.381 6.26 0.00 43.76 3.16
682 821 1.343782 TGATCTCCTCTGGGCATCAGT 60.344 52.381 6.26 0.00 43.76 3.41
683 822 1.070445 GTGATCTCCTCTGGGCATCAG 59.930 57.143 0.00 0.43 44.68 2.90
684 823 1.126488 GTGATCTCCTCTGGGCATCA 58.874 55.000 0.00 0.00 32.64 3.07
685 824 1.126488 TGTGATCTCCTCTGGGCATC 58.874 55.000 0.00 0.00 0.00 3.91
686 825 1.817087 ATGTGATCTCCTCTGGGCAT 58.183 50.000 0.00 0.00 0.00 4.40
687 826 1.211212 CAATGTGATCTCCTCTGGGCA 59.789 52.381 0.00 0.00 0.00 5.36
688 827 1.211457 ACAATGTGATCTCCTCTGGGC 59.789 52.381 0.00 0.00 0.00 5.36
689 828 2.238144 ACACAATGTGATCTCCTCTGGG 59.762 50.000 21.34 0.00 36.96 4.45
690 829 3.623906 ACACAATGTGATCTCCTCTGG 57.376 47.619 21.34 0.00 36.96 3.86
702 841 5.465532 TTGCCATATTGAACACACAATGT 57.534 34.783 0.00 0.00 46.42 2.71
703 842 5.927689 AGTTTGCCATATTGAACACACAATG 59.072 36.000 0.00 0.00 40.15 2.82
704 843 6.100404 AGTTTGCCATATTGAACACACAAT 57.900 33.333 0.00 0.00 42.17 2.71
705 844 5.528043 AGTTTGCCATATTGAACACACAA 57.472 34.783 0.00 0.00 0.00 3.33
706 845 5.767665 ACTAGTTTGCCATATTGAACACACA 59.232 36.000 0.00 0.00 0.00 3.72
707 846 6.072728 TGACTAGTTTGCCATATTGAACACAC 60.073 38.462 0.00 0.00 0.00 3.82
708 847 6.000840 TGACTAGTTTGCCATATTGAACACA 58.999 36.000 0.00 0.00 0.00 3.72
709 848 6.494893 TGACTAGTTTGCCATATTGAACAC 57.505 37.500 0.00 0.00 0.00 3.32
710 849 7.392953 TGATTGACTAGTTTGCCATATTGAACA 59.607 33.333 0.00 0.00 0.00 3.18
711 850 7.761409 TGATTGACTAGTTTGCCATATTGAAC 58.239 34.615 0.00 0.00 0.00 3.18
712 851 7.828717 TCTGATTGACTAGTTTGCCATATTGAA 59.171 33.333 0.00 0.00 0.00 2.69
713 852 7.337938 TCTGATTGACTAGTTTGCCATATTGA 58.662 34.615 0.00 0.00 0.00 2.57
714 853 7.558161 TCTGATTGACTAGTTTGCCATATTG 57.442 36.000 0.00 0.00 0.00 1.90
715 854 9.499479 CTATCTGATTGACTAGTTTGCCATATT 57.501 33.333 0.00 0.00 0.00 1.28
716 855 8.654997 ACTATCTGATTGACTAGTTTGCCATAT 58.345 33.333 6.11 0.00 0.00 1.78
717 856 8.023021 ACTATCTGATTGACTAGTTTGCCATA 57.977 34.615 6.11 0.00 0.00 2.74
718 857 6.893583 ACTATCTGATTGACTAGTTTGCCAT 58.106 36.000 6.11 0.00 0.00 4.40
719 858 6.299805 ACTATCTGATTGACTAGTTTGCCA 57.700 37.500 6.11 0.00 0.00 4.92
720 859 7.928706 ACATACTATCTGATTGACTAGTTTGCC 59.071 37.037 6.11 0.00 30.72 4.52
721 860 8.879342 ACATACTATCTGATTGACTAGTTTGC 57.121 34.615 6.11 0.00 30.72 3.68
722 861 9.469807 GGACATACTATCTGATTGACTAGTTTG 57.530 37.037 6.11 6.33 32.02 2.93
723 862 8.643324 GGGACATACTATCTGATTGACTAGTTT 58.357 37.037 6.11 0.00 0.00 2.66
724 863 8.007742 AGGGACATACTATCTGATTGACTAGTT 58.992 37.037 6.11 0.00 0.00 2.24
725 864 7.531317 AGGGACATACTATCTGATTGACTAGT 58.469 38.462 6.11 0.00 0.00 2.57
726 865 8.303156 CAAGGGACATACTATCTGATTGACTAG 58.697 40.741 6.11 0.00 0.00 2.57
727 866 8.004801 TCAAGGGACATACTATCTGATTGACTA 58.995 37.037 6.11 0.00 0.00 2.59
728 867 6.841229 TCAAGGGACATACTATCTGATTGACT 59.159 38.462 6.11 0.00 0.00 3.41
729 868 7.055667 TCAAGGGACATACTATCTGATTGAC 57.944 40.000 6.11 0.00 0.00 3.18
730 869 7.256439 CCATCAAGGGACATACTATCTGATTGA 60.256 40.741 6.11 0.00 0.00 2.57
731 870 6.877855 CCATCAAGGGACATACTATCTGATTG 59.122 42.308 0.00 0.00 0.00 2.67
732 871 6.789457 TCCATCAAGGGACATACTATCTGATT 59.211 38.462 0.00 0.00 38.24 2.57
733 872 6.326161 TCCATCAAGGGACATACTATCTGAT 58.674 40.000 0.00 0.00 38.24 2.90
734 873 5.715921 TCCATCAAGGGACATACTATCTGA 58.284 41.667 0.00 0.00 38.24 3.27
735 874 6.425210 TTCCATCAAGGGACATACTATCTG 57.575 41.667 0.00 0.00 36.46 2.90
736 875 6.465035 GCTTTCCATCAAGGGACATACTATCT 60.465 42.308 0.00 0.00 36.46 1.98
737 876 5.703130 GCTTTCCATCAAGGGACATACTATC 59.297 44.000 0.00 0.00 36.46 2.08
738 877 5.370880 AGCTTTCCATCAAGGGACATACTAT 59.629 40.000 0.00 0.00 36.46 2.12
739 878 4.721776 AGCTTTCCATCAAGGGACATACTA 59.278 41.667 0.00 0.00 36.46 1.82
740 879 3.525199 AGCTTTCCATCAAGGGACATACT 59.475 43.478 0.00 0.00 36.46 2.12
741 880 3.891049 AGCTTTCCATCAAGGGACATAC 58.109 45.455 0.00 0.00 36.46 2.39
742 881 4.018506 TCAAGCTTTCCATCAAGGGACATA 60.019 41.667 0.00 0.00 36.46 2.29
743 882 3.094572 CAAGCTTTCCATCAAGGGACAT 58.905 45.455 0.00 0.00 36.46 3.06
744 883 2.108075 TCAAGCTTTCCATCAAGGGACA 59.892 45.455 0.00 0.00 36.46 4.02
745 884 2.795329 TCAAGCTTTCCATCAAGGGAC 58.205 47.619 0.00 0.00 36.46 4.46
746 885 3.524095 TTCAAGCTTTCCATCAAGGGA 57.476 42.857 0.00 0.00 38.24 4.20
747 886 4.813750 ATTTCAAGCTTTCCATCAAGGG 57.186 40.909 0.00 0.00 38.24 3.95
748 887 6.976925 GTCATATTTCAAGCTTTCCATCAAGG 59.023 38.462 0.00 0.00 39.47 3.61
749 888 7.769220 AGTCATATTTCAAGCTTTCCATCAAG 58.231 34.615 0.00 0.00 0.00 3.02
750 889 7.148018 GGAGTCATATTTCAAGCTTTCCATCAA 60.148 37.037 0.00 0.00 0.00 2.57
751 890 6.319658 GGAGTCATATTTCAAGCTTTCCATCA 59.680 38.462 0.00 0.00 0.00 3.07
752 891 6.545298 AGGAGTCATATTTCAAGCTTTCCATC 59.455 38.462 0.00 0.00 0.00 3.51
753 892 6.430007 AGGAGTCATATTTCAAGCTTTCCAT 58.570 36.000 0.00 0.00 0.00 3.41
790 929 8.689061 AGAATTGATCAAGTGCATGCTATTTTA 58.311 29.630 20.33 4.73 0.00 1.52
836 977 8.029522 GGAAGGAACAATTAAAGAATGAAGACC 58.970 37.037 0.00 0.00 0.00 3.85
837 978 8.576442 TGGAAGGAACAATTAAAGAATGAAGAC 58.424 33.333 0.00 0.00 0.00 3.01
894 1035 4.813750 TTTTACAGTGAGGGTAGCTACC 57.186 45.455 31.50 31.50 45.71 3.18
1434 1607 3.011818 TCCTTGCATGTCAGCACAATAG 58.988 45.455 0.00 0.00 45.61 1.73
1534 1707 5.189180 GGAAATGTGCTTATCAAGACTCCT 58.811 41.667 0.00 0.00 0.00 3.69
1623 2422 7.148573 CCTGGCGATAATGTGACATAATAAGTC 60.149 40.741 0.00 0.00 36.55 3.01
1673 2593 2.474032 GCACAAAAAGCGACCGAGATAC 60.474 50.000 0.00 0.00 0.00 2.24
1695 2630 3.935203 AGTTAAGACCACAAGATGCATCG 59.065 43.478 20.67 10.34 0.00 3.84
1710 2645 2.160721 ATCGCTCCCTCCAGTTAAGA 57.839 50.000 0.00 0.00 0.00 2.10
1782 2717 7.041712 GCAGGCTTAAGGTCTAAGTGAATAATC 60.042 40.741 4.29 0.00 0.00 1.75
1824 2759 5.111293 CAAATTTTGGATACCATGTGAGCC 58.889 41.667 0.97 0.00 31.53 4.70
1826 2761 6.923012 TCACAAATTTTGGATACCATGTGAG 58.077 36.000 15.53 0.00 40.98 3.51
1999 2963 8.940952 CCTGTGAGAAGATTTTAAAGGTCTTAG 58.059 37.037 14.32 9.67 32.67 2.18
2107 3071 5.780793 ACCACTTCACTCCTGTTAGTATCTT 59.219 40.000 0.00 0.00 0.00 2.40
2128 3092 2.745482 CGGTCTCCTCTTCGAGATACCA 60.745 54.545 7.45 0.00 40.89 3.25
2154 3118 7.153217 GCTTGGAGTTAAAGCCTTAATTGTA 57.847 36.000 0.00 0.00 43.45 2.41
2384 6507 4.511617 CATACAGGATGCGAGACTACAT 57.488 45.455 0.00 0.00 42.53 2.29
2457 6659 2.823196 TTGCATCGGTTATCTTTGCG 57.177 45.000 0.00 0.00 36.11 4.85
2467 6669 8.878769 GTTTAATTTAATGGAATTTGCATCGGT 58.121 29.630 3.72 0.00 37.87 4.69
2611 7046 3.357203 TGGTCACAAGGCAACAACTTTA 58.643 40.909 0.00 0.00 41.41 1.85
2680 7115 4.381718 GGTCTATTGTACGCAGTCTTTCCT 60.382 45.833 0.00 0.00 43.93 3.36
2747 7182 5.948162 AGACCATGATGATTTTTACTGCAGT 59.052 36.000 25.12 25.12 0.00 4.40
2848 7287 8.353423 AGGTTGCAATCATGAGTTAGTATTTT 57.647 30.769 13.22 0.00 0.00 1.82
2984 7423 3.206150 GTGCAACTGGTCTCTTCTTTGA 58.794 45.455 0.00 0.00 0.00 2.69
3039 7478 5.163784 CCAGTTTCATATGAACAGTCAGCAG 60.164 44.000 17.76 0.00 37.14 4.24
3128 7678 1.461091 TTGCGGAGTCTCTCGGTTGT 61.461 55.000 11.20 0.00 34.09 3.32
3244 7854 5.060662 TGAAGACGGTTGAGATAGAGTTG 57.939 43.478 0.00 0.00 0.00 3.16
3808 15966 4.928615 CACAGGTCAAAGTCTGAGATCTTC 59.071 45.833 0.00 0.00 33.60 2.87
3852 16010 4.468510 ACCGATTTAAGTACACTGGATCCA 59.531 41.667 15.27 15.27 0.00 3.41
3866 17128 5.877564 TGCATAAGACATGTCACCGATTTAA 59.122 36.000 27.02 2.21 0.00 1.52
3867 17129 5.423886 TGCATAAGACATGTCACCGATTTA 58.576 37.500 27.02 15.44 0.00 1.40
3868 17130 4.260985 TGCATAAGACATGTCACCGATTT 58.739 39.130 27.02 13.80 0.00 2.17
3869 17131 3.872696 TGCATAAGACATGTCACCGATT 58.127 40.909 27.02 14.49 0.00 3.34
3997 18348 6.986904 AACTTCTTGCTAGGCTGTTATTAC 57.013 37.500 0.00 0.00 0.00 1.89
4034 19456 3.315191 CGGTTGCTTTCTTCCTTTCTTCA 59.685 43.478 0.00 0.00 0.00 3.02
4199 25383 4.641094 ACTCTTGACCTACGAGATCGATTT 59.359 41.667 9.58 0.00 43.02 2.17
4281 25496 2.283145 ACATTGATAGCTGCCCATCC 57.717 50.000 0.00 0.00 0.00 3.51
4386 25603 1.315690 CTAATCAGCTGGCCATGTGG 58.684 55.000 15.13 0.00 38.53 4.17
4438 25655 2.268920 GGCTCCGGTGATCAGCAA 59.731 61.111 23.68 10.73 34.62 3.91
4482 25699 5.728471 TCAATTCTTGAAAAGCAAACACCA 58.272 33.333 0.00 0.00 45.70 4.17
4502 25720 8.773645 CAGACATCAGTATACACTTGTTTTCAA 58.226 33.333 5.50 0.00 38.21 2.69
4576 26891 4.247380 GATGCAGAGGCCGGGGAG 62.247 72.222 2.18 0.00 40.13 4.30
4579 26894 4.559063 CCTGATGCAGAGGCCGGG 62.559 72.222 2.18 0.00 40.13 5.73
4581 26896 2.108566 CTCCTGATGCAGAGGCCG 59.891 66.667 9.34 0.79 40.13 6.13
4582 26897 1.153208 CACTCCTGATGCAGAGGCC 60.153 63.158 9.34 0.00 40.13 5.19
4594 26909 1.206878 TGGCTGTATGCATCACTCCT 58.793 50.000 0.19 0.00 45.15 3.69
4596 26911 3.123157 AGATGGCTGTATGCATCACTC 57.877 47.619 0.19 0.00 45.15 3.51
4599 26914 7.884354 TCATTAATAAGATGGCTGTATGCATCA 59.116 33.333 0.19 0.10 45.15 3.07
4600 26915 8.272545 TCATTAATAAGATGGCTGTATGCATC 57.727 34.615 0.19 0.00 45.15 3.91
4602 26917 7.308770 GCTTCATTAATAAGATGGCTGTATGCA 60.309 37.037 0.00 0.00 45.15 3.96
4603 26918 7.025963 GCTTCATTAATAAGATGGCTGTATGC 58.974 38.462 8.14 0.00 41.94 3.14
4606 26921 7.555914 TGTTGCTTCATTAATAAGATGGCTGTA 59.444 33.333 8.14 0.00 0.00 2.74
4607 26922 6.377996 TGTTGCTTCATTAATAAGATGGCTGT 59.622 34.615 8.14 0.00 0.00 4.40
4608 26923 6.798482 TGTTGCTTCATTAATAAGATGGCTG 58.202 36.000 8.14 0.00 0.00 4.85
4609 26924 7.408756 TTGTTGCTTCATTAATAAGATGGCT 57.591 32.000 8.14 0.00 0.00 4.75
4615 26930 8.763356 TGCACTTTTTGTTGCTTCATTAATAAG 58.237 29.630 0.00 0.00 0.00 1.73
4617 26932 8.830201 ATGCACTTTTTGTTGCTTCATTAATA 57.170 26.923 0.00 0.00 0.00 0.98
4618 26933 7.733402 ATGCACTTTTTGTTGCTTCATTAAT 57.267 28.000 0.00 0.00 0.00 1.40
4619 26934 7.708322 TGTATGCACTTTTTGTTGCTTCATTAA 59.292 29.630 0.00 0.00 0.00 1.40
4620 26935 7.205992 TGTATGCACTTTTTGTTGCTTCATTA 58.794 30.769 0.00 0.00 0.00 1.90
4621 26936 6.047870 TGTATGCACTTTTTGTTGCTTCATT 58.952 32.000 0.00 0.00 0.00 2.57
4626 26941 5.418676 ACTTTGTATGCACTTTTTGTTGCT 58.581 33.333 0.00 0.00 0.00 3.91
4627 26942 5.717038 ACTTTGTATGCACTTTTTGTTGC 57.283 34.783 0.00 0.00 0.00 4.17
4628 26943 6.312426 TGGAACTTTGTATGCACTTTTTGTTG 59.688 34.615 0.00 0.00 0.00 3.33
4629 26944 6.402222 TGGAACTTTGTATGCACTTTTTGTT 58.598 32.000 0.00 0.00 0.00 2.83
4631 26946 7.867403 ACTATGGAACTTTGTATGCACTTTTTG 59.133 33.333 0.00 0.00 0.00 2.44
4632 26947 7.951591 ACTATGGAACTTTGTATGCACTTTTT 58.048 30.769 0.00 0.00 0.00 1.94
4633 26948 7.448469 AGACTATGGAACTTTGTATGCACTTTT 59.552 33.333 0.00 0.00 0.00 2.27
4634 26949 6.942576 AGACTATGGAACTTTGTATGCACTTT 59.057 34.615 0.00 0.00 0.00 2.66
4635 26950 6.476378 AGACTATGGAACTTTGTATGCACTT 58.524 36.000 0.00 0.00 0.00 3.16
4636 26951 6.054860 AGACTATGGAACTTTGTATGCACT 57.945 37.500 0.00 0.00 0.00 4.40
4638 26953 6.299805 AGAGACTATGGAACTTTGTATGCA 57.700 37.500 0.00 0.00 0.00 3.96
4639 26954 7.982354 AGTTAGAGACTATGGAACTTTGTATGC 59.018 37.037 0.00 0.00 36.65 3.14
4640 26955 9.307121 CAGTTAGAGACTATGGAACTTTGTATG 57.693 37.037 0.00 0.00 36.65 2.39
4641 26956 9.256228 TCAGTTAGAGACTATGGAACTTTGTAT 57.744 33.333 0.00 0.00 36.65 2.29
4642 26957 8.645814 TCAGTTAGAGACTATGGAACTTTGTA 57.354 34.615 0.00 0.00 36.65 2.41
4644 26959 8.833231 TTTCAGTTAGAGACTATGGAACTTTG 57.167 34.615 0.00 0.00 36.65 2.77
4645 26960 9.274206 GTTTTCAGTTAGAGACTATGGAACTTT 57.726 33.333 0.00 0.00 36.65 2.66
4648 26963 8.603242 TTGTTTTCAGTTAGAGACTATGGAAC 57.397 34.615 0.00 0.00 36.65 3.62
4657 26972 9.950680 CTGCTTTTTATTGTTTTCAGTTAGAGA 57.049 29.630 0.00 0.00 0.00 3.10
4658 26973 8.694394 GCTGCTTTTTATTGTTTTCAGTTAGAG 58.306 33.333 0.00 0.00 0.00 2.43
4659 26974 7.651704 GGCTGCTTTTTATTGTTTTCAGTTAGA 59.348 33.333 0.00 0.00 0.00 2.10
4660 26975 7.095649 GGGCTGCTTTTTATTGTTTTCAGTTAG 60.096 37.037 0.00 0.00 0.00 2.34
4662 26977 5.527214 GGGCTGCTTTTTATTGTTTTCAGTT 59.473 36.000 0.00 0.00 0.00 3.16
4663 26978 5.056480 GGGCTGCTTTTTATTGTTTTCAGT 58.944 37.500 0.00 0.00 0.00 3.41
4664 26979 5.050159 GTGGGCTGCTTTTTATTGTTTTCAG 60.050 40.000 0.00 0.00 0.00 3.02
4665 26980 4.813697 GTGGGCTGCTTTTTATTGTTTTCA 59.186 37.500 0.00 0.00 0.00 2.69
4666 26981 4.813697 TGTGGGCTGCTTTTTATTGTTTTC 59.186 37.500 0.00 0.00 0.00 2.29
4679 27454 4.694233 CGCTCTGTGTGGGCTGCT 62.694 66.667 0.00 0.00 0.00 4.24
4682 27457 4.694233 CTGCGCTCTGTGTGGGCT 62.694 66.667 9.73 0.00 42.68 5.19
4683 27458 4.687215 TCTGCGCTCTGTGTGGGC 62.687 66.667 9.73 0.00 42.57 5.36
4684 27459 2.031012 TTCTGCGCTCTGTGTGGG 59.969 61.111 9.73 0.00 0.00 4.61
4685 27460 2.031516 CCTTCTGCGCTCTGTGTGG 61.032 63.158 9.73 0.00 0.00 4.17
4696 27471 4.570930 AGTTAGTGTTTCTAGCCTTCTGC 58.429 43.478 0.00 0.00 41.71 4.26
4697 27472 5.808030 GCTAGTTAGTGTTTCTAGCCTTCTG 59.192 44.000 10.99 0.00 46.04 3.02
4698 27473 5.968254 GCTAGTTAGTGTTTCTAGCCTTCT 58.032 41.667 10.99 0.00 46.04 2.85
4705 27480 8.818860 TCCTTTATTGGCTAGTTAGTGTTTCTA 58.181 33.333 0.00 0.00 0.00 2.10
4707 27482 7.414208 GCTCCTTTATTGGCTAGTTAGTGTTTC 60.414 40.741 0.00 0.00 0.00 2.78
4708 27483 6.374613 GCTCCTTTATTGGCTAGTTAGTGTTT 59.625 38.462 0.00 0.00 0.00 2.83
4709 27484 5.880887 GCTCCTTTATTGGCTAGTTAGTGTT 59.119 40.000 0.00 0.00 0.00 3.32
4710 27485 5.429130 GCTCCTTTATTGGCTAGTTAGTGT 58.571 41.667 0.00 0.00 0.00 3.55
4711 27486 4.816925 GGCTCCTTTATTGGCTAGTTAGTG 59.183 45.833 0.00 0.00 0.00 2.74
4712 27487 4.473559 TGGCTCCTTTATTGGCTAGTTAGT 59.526 41.667 0.00 0.00 0.00 2.24
4713 27488 4.816925 GTGGCTCCTTTATTGGCTAGTTAG 59.183 45.833 0.00 0.00 0.00 2.34
4714 27489 4.226394 TGTGGCTCCTTTATTGGCTAGTTA 59.774 41.667 0.00 0.00 0.00 2.24
4716 27491 2.576191 TGTGGCTCCTTTATTGGCTAGT 59.424 45.455 0.00 0.00 0.00 2.57
4717 27492 3.281727 TGTGGCTCCTTTATTGGCTAG 57.718 47.619 0.00 0.00 0.00 3.42
4719 27494 2.171003 GTTGTGGCTCCTTTATTGGCT 58.829 47.619 0.00 0.00 0.00 4.75
4720 27495 1.204704 GGTTGTGGCTCCTTTATTGGC 59.795 52.381 0.00 0.00 0.00 4.52
4721 27496 1.472480 CGGTTGTGGCTCCTTTATTGG 59.528 52.381 0.00 0.00 0.00 3.16
4722 27497 1.472480 CCGGTTGTGGCTCCTTTATTG 59.528 52.381 0.00 0.00 0.00 1.90
4723 27498 1.834188 CCGGTTGTGGCTCCTTTATT 58.166 50.000 0.00 0.00 0.00 1.40
4733 27508 0.108585 ATATAGCCAGCCGGTTGTGG 59.891 55.000 17.69 15.43 36.85 4.17
4736 27511 3.895232 ATCTATATAGCCAGCCGGTTG 57.105 47.619 11.98 11.98 33.28 3.77
4737 27512 3.961408 CCTATCTATATAGCCAGCCGGTT 59.039 47.826 1.90 0.00 34.78 4.44
4738 27513 3.567397 CCTATCTATATAGCCAGCCGGT 58.433 50.000 1.90 0.00 34.78 5.28
4741 27516 5.663556 AGTTTCCCTATCTATATAGCCAGCC 59.336 44.000 4.75 0.00 34.78 4.85
4742 27517 6.800072 AGTTTCCCTATCTATATAGCCAGC 57.200 41.667 4.75 0.00 34.78 4.85
4746 27521 9.549078 GGCAATTAGTTTCCCTATCTATATAGC 57.451 37.037 4.75 0.00 34.78 2.97
4757 27532 7.408013 AATAGGATAGGCAATTAGTTTCCCT 57.592 36.000 0.00 0.00 0.00 4.20
4758 27533 8.161425 TGTAATAGGATAGGCAATTAGTTTCCC 58.839 37.037 0.00 0.00 0.00 3.97
4759 27534 9.740710 ATGTAATAGGATAGGCAATTAGTTTCC 57.259 33.333 0.00 0.00 0.00 3.13
4763 27538 8.322091 GGTCATGTAATAGGATAGGCAATTAGT 58.678 37.037 0.00 0.00 0.00 2.24
4767 27542 5.734720 CGGTCATGTAATAGGATAGGCAAT 58.265 41.667 0.00 0.00 0.00 3.56
4770 27545 3.522553 GCGGTCATGTAATAGGATAGGC 58.477 50.000 0.00 0.00 0.00 3.93
4771 27546 3.513912 TGGCGGTCATGTAATAGGATAGG 59.486 47.826 0.00 0.00 0.00 2.57
4772 27547 4.801330 TGGCGGTCATGTAATAGGATAG 57.199 45.455 0.00 0.00 0.00 2.08
4774 27549 3.055094 GGATGGCGGTCATGTAATAGGAT 60.055 47.826 0.00 0.00 35.97 3.24
4775 27550 2.301870 GGATGGCGGTCATGTAATAGGA 59.698 50.000 0.00 0.00 35.97 2.94
4776 27551 2.038426 TGGATGGCGGTCATGTAATAGG 59.962 50.000 0.00 0.00 35.97 2.57
4777 27552 3.401033 TGGATGGCGGTCATGTAATAG 57.599 47.619 0.00 0.00 35.97 1.73
4778 27553 3.847671 TTGGATGGCGGTCATGTAATA 57.152 42.857 0.00 0.00 35.97 0.98
4780 27555 2.088423 GTTTGGATGGCGGTCATGTAA 58.912 47.619 0.00 0.00 35.97 2.41
4781 27556 1.680555 GGTTTGGATGGCGGTCATGTA 60.681 52.381 0.00 0.00 35.97 2.29
4782 27557 0.965363 GGTTTGGATGGCGGTCATGT 60.965 55.000 0.00 0.00 35.97 3.21
4783 27558 1.809207 GGTTTGGATGGCGGTCATG 59.191 57.895 0.00 0.00 35.97 3.07
4784 27559 1.748879 CGGTTTGGATGGCGGTCAT 60.749 57.895 0.00 0.00 39.13 3.06
4785 27560 2.359354 CGGTTTGGATGGCGGTCA 60.359 61.111 0.00 0.00 0.00 4.02
4787 27562 3.501040 AACCGGTTTGGATGGCGGT 62.501 57.895 15.86 0.00 42.00 5.68
4788 27563 2.675075 AACCGGTTTGGATGGCGG 60.675 61.111 15.86 0.00 42.00 6.13
4791 27566 3.676291 ATTTTCAACCGGTTTGGATGG 57.324 42.857 19.55 5.30 40.78 3.51
4793 27568 4.404394 GGGATATTTTCAACCGGTTTGGAT 59.596 41.667 19.55 11.79 42.00 3.41
4805 27580 3.358111 TGGTTGCTCGGGATATTTTCA 57.642 42.857 0.00 0.00 0.00 2.69
4807 27582 4.137543 GAGATGGTTGCTCGGGATATTTT 58.862 43.478 0.00 0.00 0.00 1.82
4812 27587 1.700042 GGGAGATGGTTGCTCGGGAT 61.700 60.000 0.00 0.00 33.19 3.85
4813 27588 2.367202 GGGAGATGGTTGCTCGGGA 61.367 63.158 0.00 0.00 33.19 5.14
4814 27589 2.190578 GGGAGATGGTTGCTCGGG 59.809 66.667 0.00 0.00 33.19 5.14
4815 27590 1.450312 GTGGGAGATGGTTGCTCGG 60.450 63.158 0.00 0.00 33.19 4.63
4816 27591 1.450312 GGTGGGAGATGGTTGCTCG 60.450 63.158 0.00 0.00 33.19 5.03
4818 27593 2.671070 CGGTGGGAGATGGTTGCT 59.329 61.111 0.00 0.00 0.00 3.91
4819 27594 2.438434 CCGGTGGGAGATGGTTGC 60.438 66.667 0.00 0.00 34.06 4.17
4820 27595 3.186554 CTACCCGGTGGGAGATGGTTG 62.187 61.905 9.30 0.00 46.90 3.77
4836 27611 3.014623 GCATTTGGTTACTGGGTCTACC 58.985 50.000 0.00 0.00 40.81 3.18
4837 27612 3.939592 GAGCATTTGGTTACTGGGTCTAC 59.060 47.826 0.00 0.00 0.00 2.59
4840 27615 2.092323 GGAGCATTTGGTTACTGGGTC 58.908 52.381 0.00 0.00 0.00 4.46
4843 27618 2.094675 CAGGGAGCATTTGGTTACTGG 58.905 52.381 6.70 0.00 0.00 4.00
4847 27622 0.324275 GGCCAGGGAGCATTTGGTTA 60.324 55.000 0.00 0.00 34.43 2.85
4849 27624 2.037847 GGCCAGGGAGCATTTGGT 59.962 61.111 0.00 0.00 34.43 3.67
4850 27625 1.755783 GAGGCCAGGGAGCATTTGG 60.756 63.158 5.01 0.00 35.06 3.28
4851 27626 1.755783 GGAGGCCAGGGAGCATTTG 60.756 63.158 5.01 0.00 0.00 2.32
4855 27630 3.092511 GATGGAGGCCAGGGAGCA 61.093 66.667 5.01 0.00 36.75 4.26
4856 27631 4.247380 CGATGGAGGCCAGGGAGC 62.247 72.222 5.01 0.00 36.75 4.70
4858 27633 4.088351 TCCGATGGAGGCCAGGGA 62.088 66.667 5.01 0.00 37.61 4.20
4859 27634 3.554342 CTCCGATGGAGGCCAGGG 61.554 72.222 5.01 0.00 45.43 4.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.