Multiple sequence alignment - TraesCS4A01G334200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G334200 chr4A 100.000 2882 0 0 1 2882 617348130 617351011 0.000000e+00 5323.0
1 TraesCS4A01G334200 chr4A 98.491 2518 31 6 1 2512 617288061 617290577 0.000000e+00 4433.0
2 TraesCS4A01G334200 chr4A 85.870 1465 181 18 728 2180 617281328 617282778 0.000000e+00 1535.0
3 TraesCS4A01G334200 chr4A 83.532 1676 201 30 764 2421 617360181 617361799 0.000000e+00 1496.0
4 TraesCS4A01G334200 chr4A 81.534 352 48 11 2249 2586 617282770 617283118 1.020000e-69 274.0
5 TraesCS4A01G334200 chr4A 83.217 143 17 1 2603 2745 617283180 617283315 1.080000e-24 124.0
6 TraesCS4A01G334200 chr5B 88.420 2582 189 46 95 2636 702553471 702550960 0.000000e+00 3011.0
7 TraesCS4A01G334200 chr5B 84.318 1658 217 22 685 2328 702479648 702478020 0.000000e+00 1581.0
8 TraesCS4A01G334200 chr5B 82.881 1694 213 42 761 2437 702558067 702556434 0.000000e+00 1450.0
9 TraesCS4A01G334200 chr5D 88.577 2390 149 52 107 2461 550375281 550372981 0.000000e+00 2787.0
10 TraesCS4A01G334200 chr5D 83.816 1761 227 26 685 2424 550301309 550299586 0.000000e+00 1620.0
11 TraesCS4A01G334200 chr5D 85.226 1435 160 30 761 2190 550402717 550401330 0.000000e+00 1428.0
12 TraesCS4A01G334200 chr5D 90.446 157 6 2 2590 2745 550372976 550372828 6.300000e-47 198.0
13 TraesCS4A01G334200 chr5D 85.083 181 13 5 104 270 550403434 550403254 3.820000e-39 172.0
14 TraesCS4A01G334200 chr5D 77.311 357 32 26 130 469 550301966 550301642 6.390000e-37 165.0
15 TraesCS4A01G334200 chr7A 96.296 135 5 0 2746 2880 567517736 567517602 3.740000e-54 222.0
16 TraesCS4A01G334200 chr1B 95.035 141 7 0 2740 2880 270315494 270315634 3.740000e-54 222.0
17 TraesCS4A01G334200 chr4D 95.588 136 6 0 2745 2880 274462307 274462442 4.830000e-53 219.0
18 TraesCS4A01G334200 chr6B 95.556 135 6 0 2746 2880 626888408 626888274 1.740000e-52 217.0
19 TraesCS4A01G334200 chr6A 94.928 138 7 0 2743 2880 114233531 114233394 1.740000e-52 217.0
20 TraesCS4A01G334200 chr3D 95.556 135 6 0 2746 2880 497491703 497491837 1.740000e-52 217.0
21 TraesCS4A01G334200 chr2D 95.556 135 6 0 2746 2880 441769301 441769435 1.740000e-52 217.0
22 TraesCS4A01G334200 chr1D 95.556 135 6 0 2746 2880 98830779 98830645 1.740000e-52 217.0
23 TraesCS4A01G334200 chr1A 95.556 135 6 0 2746 2880 574731028 574731162 1.740000e-52 217.0
24 TraesCS4A01G334200 chr1A 100.000 32 0 0 538 569 249773929 249773960 3.100000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G334200 chr4A 617348130 617351011 2881 False 5323.000000 5323 100.000000 1 2882 1 chr4A.!!$F2 2881
1 TraesCS4A01G334200 chr4A 617288061 617290577 2516 False 4433.000000 4433 98.491000 1 2512 1 chr4A.!!$F1 2511
2 TraesCS4A01G334200 chr4A 617360181 617361799 1618 False 1496.000000 1496 83.532000 764 2421 1 chr4A.!!$F3 1657
3 TraesCS4A01G334200 chr4A 617281328 617283315 1987 False 644.333333 1535 83.540333 728 2745 3 chr4A.!!$F4 2017
4 TraesCS4A01G334200 chr5B 702550960 702558067 7107 True 2230.500000 3011 85.650500 95 2636 2 chr5B.!!$R2 2541
5 TraesCS4A01G334200 chr5B 702478020 702479648 1628 True 1581.000000 1581 84.318000 685 2328 1 chr5B.!!$R1 1643
6 TraesCS4A01G334200 chr5D 550372828 550375281 2453 True 1492.500000 2787 89.511500 107 2745 2 chr5D.!!$R2 2638
7 TraesCS4A01G334200 chr5D 550299586 550301966 2380 True 892.500000 1620 80.563500 130 2424 2 chr5D.!!$R1 2294
8 TraesCS4A01G334200 chr5D 550401330 550403434 2104 True 800.000000 1428 85.154500 104 2190 2 chr5D.!!$R3 2086

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1854 7415 1.976132 ATGGTGGAGGCAGTGGATCG 61.976 60.0 0.0 0.0 0.0 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2749 8513 0.328258 GCCCCTAATATGCCGGTCAT 59.672 55.0 14.43 14.43 39.17 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1854 7415 1.976132 ATGGTGGAGGCAGTGGATCG 61.976 60.000 0.00 0.00 0.00 3.69
2025 7586 5.224441 AGGTGGAGGGAACTAAATAGCATA 58.776 41.667 0.00 0.00 44.43 3.14
2027 7588 6.332901 AGGTGGAGGGAACTAAATAGCATATT 59.667 38.462 0.00 0.00 44.43 1.28
2461 8045 8.732746 ACTCAGGTGTATTTAAACCATCATAC 57.267 34.615 0.00 0.00 39.05 2.39
2462 8046 7.773690 ACTCAGGTGTATTTAAACCATCATACC 59.226 37.037 0.00 0.00 39.05 2.73
2464 8048 8.278639 TCAGGTGTATTTAAACCATCATACCAT 58.721 33.333 0.00 0.00 39.05 3.55
2465 8049 8.912988 CAGGTGTATTTAAACCATCATACCATT 58.087 33.333 0.00 0.00 39.05 3.16
2466 8050 8.912988 AGGTGTATTTAAACCATCATACCATTG 58.087 33.333 0.00 0.00 39.05 2.82
2467 8051 8.141268 GGTGTATTTAAACCATCATACCATTGG 58.859 37.037 0.00 0.00 36.41 3.16
2468 8052 8.908903 GTGTATTTAAACCATCATACCATTGGA 58.091 33.333 10.37 0.00 34.52 3.53
2469 8053 9.653516 TGTATTTAAACCATCATACCATTGGAT 57.346 29.630 10.37 0.00 34.52 3.41
2470 8054 9.912634 GTATTTAAACCATCATACCATTGGATG 57.087 33.333 10.37 8.96 38.47 3.51
2471 8055 7.969690 TTTAAACCATCATACCATTGGATGT 57.030 32.000 10.37 0.00 37.34 3.06
2472 8056 9.653516 ATTTAAACCATCATACCATTGGATGTA 57.346 29.630 10.37 0.00 37.34 2.29
2473 8057 6.959639 AAACCATCATACCATTGGATGTAC 57.040 37.500 10.37 0.00 37.34 2.90
2474 8058 5.912149 ACCATCATACCATTGGATGTACT 57.088 39.130 10.37 0.00 37.34 2.73
2517 8107 9.912634 AGAAGGTTAATGTGTAAATGATGTTTG 57.087 29.630 0.00 0.00 0.00 2.93
2552 8142 7.373703 CGATACACGAGACTTTACATCTACAAG 59.626 40.741 0.00 0.00 45.77 3.16
2553 8143 6.570672 ACACGAGACTTTACATCTACAAGA 57.429 37.500 0.00 0.00 0.00 3.02
2558 8148 9.790389 ACGAGACTTTACATCTACAAGAAATAG 57.210 33.333 0.00 0.00 0.00 1.73
2586 8176 6.984474 TGTCGTCTATCAAAGAACAAAGAACT 59.016 34.615 0.00 0.00 35.47 3.01
2625 8388 5.044030 ACCTAGTCAGAATTAGAGGACTGGA 60.044 44.000 0.00 0.00 40.14 3.86
2636 8399 2.320587 GGACTGGACGCACAAGCTG 61.321 63.158 0.00 0.00 39.10 4.24
2648 8411 2.357637 GCACAAGCTGTTGGTTCTTACA 59.642 45.455 0.00 0.00 38.07 2.41
2658 8421 9.113838 AGCTGTTGGTTCTTACATATTAATCTG 57.886 33.333 0.00 0.00 0.00 2.90
2703 8466 6.656902 ACATCTTGTGATTGGTACATGAGAT 58.343 36.000 0.00 0.00 39.30 2.75
2747 8511 2.439338 TGCGTGGTGGCAAACTGT 60.439 55.556 0.00 0.00 40.59 3.55
2748 8512 2.049185 TGCGTGGTGGCAAACTGTT 61.049 52.632 0.00 0.00 40.59 3.16
2749 8513 0.748367 TGCGTGGTGGCAAACTGTTA 60.748 50.000 0.00 0.00 40.59 2.41
2750 8514 0.596082 GCGTGGTGGCAAACTGTTAT 59.404 50.000 0.00 0.00 0.00 1.89
2751 8515 1.665735 GCGTGGTGGCAAACTGTTATG 60.666 52.381 0.00 0.00 0.00 1.90
2752 8516 1.876799 CGTGGTGGCAAACTGTTATGA 59.123 47.619 0.00 0.00 0.00 2.15
2753 8517 2.350388 CGTGGTGGCAAACTGTTATGAC 60.350 50.000 0.00 0.00 0.00 3.06
2754 8518 2.030274 GTGGTGGCAAACTGTTATGACC 60.030 50.000 0.00 0.00 0.00 4.02
2755 8519 1.199097 GGTGGCAAACTGTTATGACCG 59.801 52.381 0.00 0.00 0.00 4.79
2756 8520 1.199097 GTGGCAAACTGTTATGACCGG 59.801 52.381 0.00 0.00 0.00 5.28
2757 8521 0.170339 GGCAAACTGTTATGACCGGC 59.830 55.000 0.00 0.00 0.00 6.13
2758 8522 0.878416 GCAAACTGTTATGACCGGCA 59.122 50.000 0.00 0.00 0.00 5.69
2759 8523 1.472480 GCAAACTGTTATGACCGGCAT 59.528 47.619 14.43 14.43 41.08 4.40
2760 8524 2.680841 GCAAACTGTTATGACCGGCATA 59.319 45.455 0.00 7.99 38.44 3.14
2761 8525 3.315191 GCAAACTGTTATGACCGGCATAT 59.685 43.478 16.09 5.40 39.15 1.78
2762 8526 4.202010 GCAAACTGTTATGACCGGCATATT 60.202 41.667 16.09 7.62 39.15 1.28
2763 8527 5.008217 GCAAACTGTTATGACCGGCATATTA 59.992 40.000 16.09 9.48 39.15 0.98
2764 8528 6.658831 CAAACTGTTATGACCGGCATATTAG 58.341 40.000 16.09 17.14 39.15 1.73
2765 8529 4.894784 ACTGTTATGACCGGCATATTAGG 58.105 43.478 16.09 10.77 39.15 2.69
2766 8530 4.253685 CTGTTATGACCGGCATATTAGGG 58.746 47.826 16.09 5.52 39.15 3.53
2767 8531 3.008594 TGTTATGACCGGCATATTAGGGG 59.991 47.826 16.09 0.00 39.15 4.79
2768 8532 0.328258 ATGACCGGCATATTAGGGGC 59.672 55.000 0.00 0.00 34.82 5.80
2769 8533 0.766674 TGACCGGCATATTAGGGGCT 60.767 55.000 0.00 0.00 0.00 5.19
2770 8534 0.400594 GACCGGCATATTAGGGGCTT 59.599 55.000 0.00 0.00 0.00 4.35
2771 8535 1.626825 GACCGGCATATTAGGGGCTTA 59.373 52.381 0.00 0.00 0.00 3.09
2772 8536 1.628846 ACCGGCATATTAGGGGCTTAG 59.371 52.381 0.00 0.00 0.00 2.18
2773 8537 1.679032 CCGGCATATTAGGGGCTTAGC 60.679 57.143 0.00 0.00 0.00 3.09
2786 8550 3.782889 GGCTTAGCCCAATTAGTTGTG 57.217 47.619 13.12 0.00 44.06 3.33
2787 8551 2.427095 GGCTTAGCCCAATTAGTTGTGG 59.573 50.000 13.12 0.01 44.06 4.17
2788 8552 2.159240 GCTTAGCCCAATTAGTTGTGGC 60.159 50.000 17.21 17.21 44.88 5.01
2789 8553 2.137810 TAGCCCAATTAGTTGTGGCC 57.862 50.000 19.68 0.00 45.27 5.36
2790 8554 0.614697 AGCCCAATTAGTTGTGGCCC 60.615 55.000 19.68 0.00 45.27 5.80
2791 8555 0.902516 GCCCAATTAGTTGTGGCCCA 60.903 55.000 15.21 0.00 41.72 5.36
2792 8556 1.638529 CCCAATTAGTTGTGGCCCAA 58.361 50.000 0.00 0.55 33.36 4.12
2793 8557 2.187100 CCCAATTAGTTGTGGCCCAAT 58.813 47.619 0.00 0.00 35.02 3.16
2794 8558 2.571202 CCCAATTAGTTGTGGCCCAATT 59.429 45.455 0.00 3.67 35.02 2.32
2795 8559 3.008923 CCCAATTAGTTGTGGCCCAATTT 59.991 43.478 0.00 0.17 35.02 1.82
2796 8560 4.223923 CCCAATTAGTTGTGGCCCAATTTA 59.776 41.667 0.00 0.00 35.02 1.40
2797 8561 5.104569 CCCAATTAGTTGTGGCCCAATTTAT 60.105 40.000 0.00 0.00 35.02 1.40
2798 8562 6.048509 CCAATTAGTTGTGGCCCAATTTATC 58.951 40.000 0.00 0.00 35.02 1.75
2799 8563 6.127083 CCAATTAGTTGTGGCCCAATTTATCT 60.127 38.462 0.00 0.11 35.02 1.98
2800 8564 7.330262 CAATTAGTTGTGGCCCAATTTATCTT 58.670 34.615 0.00 0.00 35.02 2.40
2801 8565 8.474025 CAATTAGTTGTGGCCCAATTTATCTTA 58.526 33.333 0.00 0.00 35.02 2.10
2802 8566 8.782137 ATTAGTTGTGGCCCAATTTATCTTAT 57.218 30.769 0.00 0.00 35.02 1.73
2803 8567 6.715347 AGTTGTGGCCCAATTTATCTTATC 57.285 37.500 0.00 0.00 35.02 1.75
2804 8568 5.299279 AGTTGTGGCCCAATTTATCTTATCG 59.701 40.000 0.00 0.00 35.02 2.92
2805 8569 4.787551 TGTGGCCCAATTTATCTTATCGT 58.212 39.130 0.00 0.00 0.00 3.73
2806 8570 5.197451 TGTGGCCCAATTTATCTTATCGTT 58.803 37.500 0.00 0.00 0.00 3.85
2807 8571 6.358178 TGTGGCCCAATTTATCTTATCGTTA 58.642 36.000 0.00 0.00 0.00 3.18
2808 8572 7.001674 TGTGGCCCAATTTATCTTATCGTTAT 58.998 34.615 0.00 0.00 0.00 1.89
2809 8573 7.504238 TGTGGCCCAATTTATCTTATCGTTATT 59.496 33.333 0.00 0.00 0.00 1.40
2810 8574 9.005777 GTGGCCCAATTTATCTTATCGTTATTA 57.994 33.333 0.00 0.00 0.00 0.98
2811 8575 9.226606 TGGCCCAATTTATCTTATCGTTATTAG 57.773 33.333 0.00 0.00 0.00 1.73
2812 8576 8.674607 GGCCCAATTTATCTTATCGTTATTAGG 58.325 37.037 0.00 0.00 0.00 2.69
2813 8577 8.674607 GCCCAATTTATCTTATCGTTATTAGGG 58.325 37.037 0.00 0.00 0.00 3.53
2814 8578 9.953565 CCCAATTTATCTTATCGTTATTAGGGA 57.046 33.333 0.00 0.00 0.00 4.20
2862 8626 9.584008 AGAGGATTATATAAACTCGTGTAAGGA 57.416 33.333 17.74 0.00 32.18 3.36
2863 8627 9.623350 GAGGATTATATAAACTCGTGTAAGGAC 57.377 37.037 12.18 0.00 0.00 3.85
2864 8628 8.583296 AGGATTATATAAACTCGTGTAAGGACC 58.417 37.037 0.00 0.00 0.00 4.46
2865 8629 7.816513 GGATTATATAAACTCGTGTAAGGACCC 59.183 40.741 0.00 0.00 0.00 4.46
2866 8630 3.515330 ATAAACTCGTGTAAGGACCCG 57.485 47.619 0.00 0.00 0.00 5.28
2867 8631 1.043022 AAACTCGTGTAAGGACCCGT 58.957 50.000 0.00 0.00 0.00 5.28
2868 8632 1.043022 AACTCGTGTAAGGACCCGTT 58.957 50.000 0.00 0.00 0.00 4.44
2869 8633 1.043022 ACTCGTGTAAGGACCCGTTT 58.957 50.000 0.00 0.00 0.00 3.60
2870 8634 1.413812 ACTCGTGTAAGGACCCGTTTT 59.586 47.619 0.00 0.00 0.00 2.43
2871 8635 1.796459 CTCGTGTAAGGACCCGTTTTG 59.204 52.381 0.00 0.00 0.00 2.44
2872 8636 1.411977 TCGTGTAAGGACCCGTTTTGA 59.588 47.619 0.00 0.00 0.00 2.69
2873 8637 1.796459 CGTGTAAGGACCCGTTTTGAG 59.204 52.381 0.00 0.00 0.00 3.02
2874 8638 2.546373 CGTGTAAGGACCCGTTTTGAGA 60.546 50.000 0.00 0.00 0.00 3.27
2875 8639 3.671716 GTGTAAGGACCCGTTTTGAGAT 58.328 45.455 0.00 0.00 0.00 2.75
2876 8640 4.070009 GTGTAAGGACCCGTTTTGAGATT 58.930 43.478 0.00 0.00 0.00 2.40
2877 8641 5.240121 GTGTAAGGACCCGTTTTGAGATTA 58.760 41.667 0.00 0.00 0.00 1.75
2878 8642 5.702209 GTGTAAGGACCCGTTTTGAGATTAA 59.298 40.000 0.00 0.00 0.00 1.40
2879 8643 5.935789 TGTAAGGACCCGTTTTGAGATTAAG 59.064 40.000 0.00 0.00 0.00 1.85
2880 8644 4.903045 AGGACCCGTTTTGAGATTAAGA 57.097 40.909 0.00 0.00 0.00 2.10
2881 8645 5.237236 AGGACCCGTTTTGAGATTAAGAA 57.763 39.130 0.00 0.00 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1854 7415 4.489771 CCGCCACCACCAGATCCC 62.490 72.222 0.00 0.00 0.00 3.85
1951 7512 3.443681 CCCCATGTCCTTCAATGTGTAAC 59.556 47.826 0.00 0.00 37.35 2.50
2025 7586 6.303903 AGGAGCTAAATGCAAATCCAAAAT 57.696 33.333 0.00 0.00 45.94 1.82
2027 7588 5.714333 TGTAGGAGCTAAATGCAAATCCAAA 59.286 36.000 0.00 0.00 45.94 3.28
2216 7789 3.452755 CATACTCTCGTGGGTATGCAA 57.547 47.619 20.97 0.00 38.83 4.08
2461 8045 5.964958 AACACTTTCAGTACATCCAATGG 57.035 39.130 0.00 0.00 33.60 3.16
2462 8046 7.604164 AGTCTAACACTTTCAGTACATCCAATG 59.396 37.037 0.00 0.00 26.56 2.82
2464 8048 7.062749 AGTCTAACACTTTCAGTACATCCAA 57.937 36.000 0.00 0.00 26.56 3.53
2465 8049 6.665992 AGTCTAACACTTTCAGTACATCCA 57.334 37.500 0.00 0.00 26.56 3.41
2466 8050 9.141400 CTTTAGTCTAACACTTTCAGTACATCC 57.859 37.037 0.00 0.00 36.43 3.51
2467 8051 9.909644 TCTTTAGTCTAACACTTTCAGTACATC 57.090 33.333 0.00 0.00 36.43 3.06
2469 8053 9.745880 CTTCTTTAGTCTAACACTTTCAGTACA 57.254 33.333 0.00 0.00 36.43 2.90
2470 8054 9.194271 CCTTCTTTAGTCTAACACTTTCAGTAC 57.806 37.037 0.00 0.00 36.43 2.73
2471 8055 8.921205 ACCTTCTTTAGTCTAACACTTTCAGTA 58.079 33.333 0.00 0.00 36.43 2.74
2472 8056 7.793036 ACCTTCTTTAGTCTAACACTTTCAGT 58.207 34.615 0.00 0.00 36.43 3.41
2473 8057 8.664211 AACCTTCTTTAGTCTAACACTTTCAG 57.336 34.615 0.00 0.00 36.43 3.02
2495 8085 6.312672 GCCCAAACATCATTTACACATTAACC 59.687 38.462 0.00 0.00 0.00 2.85
2512 8102 1.070914 TGTATCGACACTGCCCAAACA 59.929 47.619 0.00 0.00 0.00 2.83
2553 8143 9.653287 TGTTCTTTGATAGACGACATTCTATTT 57.347 29.630 0.00 0.00 38.66 1.40
2558 8148 8.018677 TCTTTGTTCTTTGATAGACGACATTC 57.981 34.615 0.00 0.00 30.90 2.67
2576 8166 9.730420 GTTCACATTATTACACAGTTCTTTGTT 57.270 29.630 0.00 0.00 0.00 2.83
2586 8176 8.129496 TCTGACTAGGTTCACATTATTACACA 57.871 34.615 0.00 0.00 0.00 3.72
2625 8388 0.748005 AGAACCAACAGCTTGTGCGT 60.748 50.000 0.00 0.00 45.42 5.24
2648 8411 8.317679 GGCAAGACCTATCACTCAGATTAATAT 58.682 37.037 0.00 0.00 38.19 1.28
2745 8509 3.008594 CCCCTAATATGCCGGTCATAACA 59.991 47.826 18.34 10.64 40.73 2.41
2746 8510 3.606687 CCCCTAATATGCCGGTCATAAC 58.393 50.000 18.34 0.00 40.73 1.89
2747 8511 2.026636 GCCCCTAATATGCCGGTCATAA 60.027 50.000 18.34 6.45 40.73 1.90
2748 8512 1.557832 GCCCCTAATATGCCGGTCATA 59.442 52.381 17.22 17.22 41.52 2.15
2749 8513 0.328258 GCCCCTAATATGCCGGTCAT 59.672 55.000 14.43 14.43 39.17 3.06
2750 8514 0.766674 AGCCCCTAATATGCCGGTCA 60.767 55.000 1.90 1.38 0.00 4.02
2751 8515 0.400594 AAGCCCCTAATATGCCGGTC 59.599 55.000 1.90 0.00 0.00 4.79
2752 8516 1.628846 CTAAGCCCCTAATATGCCGGT 59.371 52.381 1.90 0.00 0.00 5.28
2753 8517 1.679032 GCTAAGCCCCTAATATGCCGG 60.679 57.143 0.00 0.00 0.00 6.13
2754 8518 1.679032 GGCTAAGCCCCTAATATGCCG 60.679 57.143 0.00 0.00 44.06 5.69
2755 8519 2.130272 GGCTAAGCCCCTAATATGCC 57.870 55.000 0.00 0.00 44.06 4.40
2767 8531 2.159240 GCCACAACTAATTGGGCTAAGC 60.159 50.000 8.57 0.00 43.46 3.09
2768 8532 3.782889 GCCACAACTAATTGGGCTAAG 57.217 47.619 8.57 0.00 43.46 2.18
2773 8537 1.638529 TTGGGCCACAACTAATTGGG 58.361 50.000 5.23 0.00 40.42 4.12
2774 8538 3.979101 AATTGGGCCACAACTAATTGG 57.021 42.857 5.23 0.00 42.94 3.16
2775 8539 6.877236 AGATAAATTGGGCCACAACTAATTG 58.123 36.000 5.23 0.00 42.94 2.32
2776 8540 7.494922 AAGATAAATTGGGCCACAACTAATT 57.505 32.000 5.23 0.00 42.94 1.40
2777 8541 8.782137 ATAAGATAAATTGGGCCACAACTAAT 57.218 30.769 5.23 0.00 42.94 1.73
2778 8542 7.012894 CGATAAGATAAATTGGGCCACAACTAA 59.987 37.037 5.23 0.00 42.94 2.24
2779 8543 6.485313 CGATAAGATAAATTGGGCCACAACTA 59.515 38.462 5.23 0.00 42.94 2.24
2780 8544 5.299279 CGATAAGATAAATTGGGCCACAACT 59.701 40.000 5.23 0.00 42.94 3.16
2781 8545 5.067283 ACGATAAGATAAATTGGGCCACAAC 59.933 40.000 5.23 0.00 42.94 3.32
2782 8546 5.197451 ACGATAAGATAAATTGGGCCACAA 58.803 37.500 5.23 7.14 44.54 3.33
2783 8547 4.787551 ACGATAAGATAAATTGGGCCACA 58.212 39.130 5.23 0.00 0.00 4.17
2784 8548 5.767816 AACGATAAGATAAATTGGGCCAC 57.232 39.130 5.23 0.00 0.00 5.01
2785 8549 9.226606 CTAATAACGATAAGATAAATTGGGCCA 57.773 33.333 0.00 0.00 0.00 5.36
2786 8550 8.674607 CCTAATAACGATAAGATAAATTGGGCC 58.325 37.037 0.00 0.00 0.00 5.80
2787 8551 8.674607 CCCTAATAACGATAAGATAAATTGGGC 58.325 37.037 0.00 0.00 0.00 5.36
2788 8552 9.953565 TCCCTAATAACGATAAGATAAATTGGG 57.046 33.333 0.00 0.00 0.00 4.12
2796 8560 8.591940 GGGTTAAGTCCCTAATAACGATAAGAT 58.408 37.037 0.00 0.00 43.85 2.40
2797 8561 7.955918 GGGTTAAGTCCCTAATAACGATAAGA 58.044 38.462 0.00 0.00 43.85 2.10
2836 8600 9.584008 TCCTTACACGAGTTTATATAATCCTCT 57.416 33.333 15.36 5.81 0.00 3.69
2837 8601 9.623350 GTCCTTACACGAGTTTATATAATCCTC 57.377 37.037 10.53 10.53 0.00 3.71
2838 8602 8.583296 GGTCCTTACACGAGTTTATATAATCCT 58.417 37.037 0.00 0.00 0.00 3.24
2839 8603 7.816513 GGGTCCTTACACGAGTTTATATAATCC 59.183 40.741 0.00 0.00 0.00 3.01
2840 8604 8.754230 GGGTCCTTACACGAGTTTATATAATC 57.246 38.462 0.00 0.00 0.00 1.75
2854 8618 3.116079 TCTCAAAACGGGTCCTTACAC 57.884 47.619 0.00 0.00 0.00 2.90
2855 8619 4.360951 AATCTCAAAACGGGTCCTTACA 57.639 40.909 0.00 0.00 0.00 2.41
2856 8620 6.168389 TCTTAATCTCAAAACGGGTCCTTAC 58.832 40.000 0.00 0.00 0.00 2.34
2857 8621 6.363167 TCTTAATCTCAAAACGGGTCCTTA 57.637 37.500 0.00 0.00 0.00 2.69
2858 8622 5.237236 TCTTAATCTCAAAACGGGTCCTT 57.763 39.130 0.00 0.00 0.00 3.36
2859 8623 4.903045 TCTTAATCTCAAAACGGGTCCT 57.097 40.909 0.00 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.