Multiple sequence alignment - TraesCS4A01G333700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G333700 chr4A 100.000 2564 0 0 1 2564 617048263 617050826 0.000000e+00 4735.0
1 TraesCS4A01G333700 chr4A 89.521 1212 73 20 741 1905 574159636 574160840 0.000000e+00 1485.0
2 TraesCS4A01G333700 chr4A 82.382 1209 132 44 741 1905 657082319 657083490 0.000000e+00 977.0
3 TraesCS4A01G333700 chr2A 90.563 1208 64 21 741 1908 155748949 155747752 0.000000e+00 1554.0
4 TraesCS4A01G333700 chr2A 88.953 1213 65 16 741 1905 745425688 745424497 0.000000e+00 1434.0
5 TraesCS4A01G333700 chr2A 88.321 1233 76 16 741 1914 83211532 83212755 0.000000e+00 1417.0
6 TraesCS4A01G333700 chr2A 87.195 164 16 5 1745 1905 180100482 180100643 5.640000e-42 182.0
7 TraesCS4A01G333700 chr7A 89.712 1215 45 30 741 1905 553041151 553042335 0.000000e+00 1478.0
8 TraesCS4A01G333700 chr7A 88.633 1214 59 22 741 1905 50113335 50112152 0.000000e+00 1404.0
9 TraesCS4A01G333700 chr7A 88.468 1162 87 26 779 1905 34138094 34136945 0.000000e+00 1360.0
10 TraesCS4A01G333700 chr6A 89.300 1215 52 25 741 1905 106477941 106476755 0.000000e+00 1452.0
11 TraesCS4A01G333700 chr1A 89.751 1083 68 29 741 1788 490793028 490794102 0.000000e+00 1345.0
12 TraesCS4A01G333700 chr6D 91.182 998 39 13 741 1696 148078487 148077497 0.000000e+00 1310.0
13 TraesCS4A01G333700 chr6D 91.548 911 47 11 741 1624 407210372 407209465 0.000000e+00 1229.0
14 TraesCS4A01G333700 chr2D 87.107 1210 68 39 741 1905 589321806 589320640 0.000000e+00 1290.0
15 TraesCS4A01G333700 chr5D 90.625 960 54 15 741 1696 244637709 244636782 0.000000e+00 1242.0
16 TraesCS4A01G333700 chr5D 88.038 418 26 12 741 1134 242952566 242952149 8.300000e-130 473.0
17 TraesCS4A01G333700 chr5D 93.238 281 18 1 2278 2557 550576420 550576140 1.840000e-111 412.0
18 TraesCS4A01G333700 chr5D 89.198 324 25 4 4 323 550577454 550577137 1.850000e-106 396.0
19 TraesCS4A01G333700 chr5D 87.255 306 29 8 2089 2384 550563260 550562955 8.790000e-90 340.0
20 TraesCS4A01G333700 chr5D 93.056 216 13 2 1906 2121 550576752 550576539 5.330000e-82 315.0
21 TraesCS4A01G333700 chr5D 80.519 154 13 4 495 633 550577117 550576966 4.510000e-18 102.0
22 TraesCS4A01G333700 chr5D 84.000 100 15 1 2458 2557 550562950 550562852 7.550000e-16 95.3
23 TraesCS4A01G333700 chr5B 86.845 783 54 18 4 746 703089570 703088797 0.000000e+00 830.0
24 TraesCS4A01G333700 chr5B 85.714 679 63 20 1906 2557 703088802 703088131 0.000000e+00 686.0
25 TraesCS4A01G333700 chr2B 79.268 1230 174 53 741 1904 157299905 157298691 0.000000e+00 784.0
26 TraesCS4A01G333700 chr7D 88.957 652 41 12 741 1365 638190916 638191563 0.000000e+00 776.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G333700 chr4A 617048263 617050826 2563 False 4735.00 4735 100.00000 1 2564 1 chr4A.!!$F2 2563
1 TraesCS4A01G333700 chr4A 574159636 574160840 1204 False 1485.00 1485 89.52100 741 1905 1 chr4A.!!$F1 1164
2 TraesCS4A01G333700 chr4A 657082319 657083490 1171 False 977.00 977 82.38200 741 1905 1 chr4A.!!$F3 1164
3 TraesCS4A01G333700 chr2A 155747752 155748949 1197 True 1554.00 1554 90.56300 741 1908 1 chr2A.!!$R1 1167
4 TraesCS4A01G333700 chr2A 745424497 745425688 1191 True 1434.00 1434 88.95300 741 1905 1 chr2A.!!$R2 1164
5 TraesCS4A01G333700 chr2A 83211532 83212755 1223 False 1417.00 1417 88.32100 741 1914 1 chr2A.!!$F1 1173
6 TraesCS4A01G333700 chr7A 553041151 553042335 1184 False 1478.00 1478 89.71200 741 1905 1 chr7A.!!$F1 1164
7 TraesCS4A01G333700 chr7A 50112152 50113335 1183 True 1404.00 1404 88.63300 741 1905 1 chr7A.!!$R2 1164
8 TraesCS4A01G333700 chr7A 34136945 34138094 1149 True 1360.00 1360 88.46800 779 1905 1 chr7A.!!$R1 1126
9 TraesCS4A01G333700 chr6A 106476755 106477941 1186 True 1452.00 1452 89.30000 741 1905 1 chr6A.!!$R1 1164
10 TraesCS4A01G333700 chr1A 490793028 490794102 1074 False 1345.00 1345 89.75100 741 1788 1 chr1A.!!$F1 1047
11 TraesCS4A01G333700 chr6D 148077497 148078487 990 True 1310.00 1310 91.18200 741 1696 1 chr6D.!!$R1 955
12 TraesCS4A01G333700 chr6D 407209465 407210372 907 True 1229.00 1229 91.54800 741 1624 1 chr6D.!!$R2 883
13 TraesCS4A01G333700 chr2D 589320640 589321806 1166 True 1290.00 1290 87.10700 741 1905 1 chr2D.!!$R1 1164
14 TraesCS4A01G333700 chr5D 244636782 244637709 927 True 1242.00 1242 90.62500 741 1696 1 chr5D.!!$R2 955
15 TraesCS4A01G333700 chr5D 550576140 550577454 1314 True 306.25 412 89.00275 4 2557 4 chr5D.!!$R4 2553
16 TraesCS4A01G333700 chr5B 703088131 703089570 1439 True 758.00 830 86.27950 4 2557 2 chr5B.!!$R1 2553
17 TraesCS4A01G333700 chr2B 157298691 157299905 1214 True 784.00 784 79.26800 741 1904 1 chr2B.!!$R1 1163
18 TraesCS4A01G333700 chr7D 638190916 638191563 647 False 776.00 776 88.95700 741 1365 1 chr7D.!!$F1 624

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
217 231 0.037975 GCCACTGGAAACTGCCATTG 60.038 55.0 0.0 0.0 38.08 2.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1982 3055 0.460987 CACCGACAGAGAAGATGCCC 60.461 60.0 0.0 0.0 0.0 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
209 223 0.811281 GCATAGTGGCCACTGGAAAC 59.189 55.000 42.35 24.87 42.52 2.78
212 226 0.250727 TAGTGGCCACTGGAAACTGC 60.251 55.000 42.35 11.65 42.52 4.40
213 227 2.203480 TGGCCACTGGAAACTGCC 60.203 61.111 0.00 0.00 42.49 4.85
215 229 1.607467 GGCCACTGGAAACTGCCAT 60.607 57.895 0.00 0.00 41.76 4.40
216 230 1.187567 GGCCACTGGAAACTGCCATT 61.188 55.000 0.00 0.00 41.76 3.16
217 231 0.037975 GCCACTGGAAACTGCCATTG 60.038 55.000 0.00 0.00 38.08 2.82
218 232 0.037975 CCACTGGAAACTGCCATTGC 60.038 55.000 0.00 0.00 37.30 3.56
220 234 0.469705 ACTGGAAACTGCCATTGCCA 60.470 50.000 0.00 0.00 37.30 4.92
222 236 0.680618 TGGAAACTGCCATTGCCAAG 59.319 50.000 0.00 0.00 36.33 3.61
223 237 0.671472 GGAAACTGCCATTGCCAAGC 60.671 55.000 0.00 0.00 36.33 4.01
224 238 1.005867 AAACTGCCATTGCCAAGCG 60.006 52.632 0.00 0.00 36.33 4.68
232 247 1.097547 CATTGCCAAGCGGAGTAGGG 61.098 60.000 0.00 0.00 0.00 3.53
244 259 2.423947 CGGAGTAGGGCCTCTTACCTTA 60.424 54.545 10.74 0.00 38.30 2.69
246 261 3.373987 GGAGTAGGGCCTCTTACCTTAGT 60.374 52.174 10.74 0.00 38.30 2.24
270 285 2.202837 GGTTGCTACCGCCTACCG 60.203 66.667 0.36 0.00 34.01 4.02
280 295 2.499685 GCCTACCGGTGAATCGCT 59.500 61.111 19.93 0.00 0.00 4.93
295 310 1.153823 CGCTAACCGTGGGTCAGAG 60.154 63.158 0.00 0.00 33.12 3.35
306 321 3.462021 GTGGGTCAGAGATGAATACTGC 58.538 50.000 0.00 0.00 0.00 4.40
307 322 3.106827 TGGGTCAGAGATGAATACTGCA 58.893 45.455 0.00 0.00 0.00 4.41
347 362 8.018537 TGATGTATGTGTGCCTAGTTAGTTAT 57.981 34.615 0.00 0.00 0.00 1.89
350 365 9.681062 ATGTATGTGTGCCTAGTTAGTTATTTT 57.319 29.630 0.00 0.00 0.00 1.82
351 366 9.509956 TGTATGTGTGCCTAGTTAGTTATTTTT 57.490 29.630 0.00 0.00 0.00 1.94
352 367 9.769093 GTATGTGTGCCTAGTTAGTTATTTTTG 57.231 33.333 0.00 0.00 0.00 2.44
354 369 8.905660 TGTGTGCCTAGTTAGTTATTTTTGTA 57.094 30.769 0.00 0.00 0.00 2.41
385 401 3.190535 CAGTGTGGTAAAATGTACAGCCC 59.809 47.826 0.33 0.00 0.00 5.19
396 412 3.006112 TGTACAGCCCACTTTTGTTGA 57.994 42.857 0.00 0.00 0.00 3.18
462 489 7.872993 TCACTCGTTTATCTTTCTCTGAAACAT 59.127 33.333 0.00 0.00 31.73 2.71
465 492 9.140286 CTCGTTTATCTTTCTCTGAAACATGTA 57.860 33.333 0.00 0.00 31.73 2.29
507 534 2.455674 AGCGCATCACTGTAGTTCAA 57.544 45.000 11.47 0.00 0.00 2.69
511 538 3.782250 GCGCATCACTGTAGTTCAAATCG 60.782 47.826 0.30 0.00 0.00 3.34
541 576 1.134877 CGCTGAAGCTGAATCCTCTCA 60.135 52.381 0.10 0.00 39.32 3.27
548 583 6.169094 TGAAGCTGAATCCTCTCAGTTTTAG 58.831 40.000 4.52 0.00 44.11 1.85
549 584 6.014242 TGAAGCTGAATCCTCTCAGTTTTAGA 60.014 38.462 4.52 0.00 44.11 2.10
561 596 9.401058 CCTCTCAGTTTTAGATGATTACCAAAT 57.599 33.333 0.00 0.00 0.00 2.32
592 627 4.492570 CGTAACCATTGATCGCTGAGAAAC 60.493 45.833 0.00 0.00 0.00 2.78
593 628 2.359900 ACCATTGATCGCTGAGAAACC 58.640 47.619 0.00 0.00 0.00 3.27
594 629 2.290260 ACCATTGATCGCTGAGAAACCA 60.290 45.455 0.00 0.00 0.00 3.67
595 630 2.353889 CCATTGATCGCTGAGAAACCAG 59.646 50.000 0.00 0.00 37.23 4.00
596 631 3.264947 CATTGATCGCTGAGAAACCAGA 58.735 45.455 0.00 0.00 36.29 3.86
597 632 2.662006 TGATCGCTGAGAAACCAGAG 57.338 50.000 0.00 0.00 36.29 3.35
598 633 1.285578 GATCGCTGAGAAACCAGAGC 58.714 55.000 0.00 0.00 36.29 4.09
599 634 0.610174 ATCGCTGAGAAACCAGAGCA 59.390 50.000 0.00 0.00 36.29 4.26
600 635 0.319900 TCGCTGAGAAACCAGAGCAC 60.320 55.000 0.00 0.00 36.29 4.40
601 636 1.621301 CGCTGAGAAACCAGAGCACG 61.621 60.000 0.00 0.00 36.29 5.34
602 637 0.601311 GCTGAGAAACCAGAGCACGT 60.601 55.000 0.00 0.00 36.29 4.49
603 638 1.336887 GCTGAGAAACCAGAGCACGTA 60.337 52.381 0.00 0.00 36.29 3.57
604 639 2.329379 CTGAGAAACCAGAGCACGTAC 58.671 52.381 0.00 0.00 36.29 3.67
605 640 1.335597 TGAGAAACCAGAGCACGTACG 60.336 52.381 15.01 15.01 0.00 3.67
606 641 0.956633 AGAAACCAGAGCACGTACGA 59.043 50.000 24.41 0.00 0.00 3.43
607 642 1.068472 AGAAACCAGAGCACGTACGAG 60.068 52.381 24.41 16.14 0.00 4.18
608 643 0.672342 AAACCAGAGCACGTACGAGT 59.328 50.000 24.41 5.29 0.00 4.18
609 644 0.240411 AACCAGAGCACGTACGAGTC 59.760 55.000 24.41 14.47 0.00 3.36
610 645 0.605860 ACCAGAGCACGTACGAGTCT 60.606 55.000 24.41 16.47 0.00 3.24
611 646 1.338484 ACCAGAGCACGTACGAGTCTA 60.338 52.381 24.41 0.00 0.00 2.59
612 647 1.941294 CCAGAGCACGTACGAGTCTAT 59.059 52.381 24.41 10.06 0.00 1.98
613 648 2.032722 CCAGAGCACGTACGAGTCTATC 60.033 54.545 24.41 11.07 0.00 2.08
614 649 2.608090 CAGAGCACGTACGAGTCTATCA 59.392 50.000 24.41 0.00 0.00 2.15
615 650 2.867368 AGAGCACGTACGAGTCTATCAG 59.133 50.000 24.41 1.18 0.00 2.90
616 651 2.864946 GAGCACGTACGAGTCTATCAGA 59.135 50.000 24.41 0.00 0.00 3.27
617 652 3.268330 AGCACGTACGAGTCTATCAGAA 58.732 45.455 24.41 0.00 0.00 3.02
618 653 3.063725 AGCACGTACGAGTCTATCAGAAC 59.936 47.826 24.41 0.00 0.00 3.01
619 654 3.063725 GCACGTACGAGTCTATCAGAACT 59.936 47.826 24.41 0.00 0.00 3.01
620 655 4.437121 GCACGTACGAGTCTATCAGAACTT 60.437 45.833 24.41 0.00 0.00 2.66
621 656 5.220548 GCACGTACGAGTCTATCAGAACTTA 60.221 44.000 24.41 0.00 0.00 2.24
622 657 6.184015 CACGTACGAGTCTATCAGAACTTAC 58.816 44.000 24.41 0.00 0.00 2.34
623 658 5.293079 ACGTACGAGTCTATCAGAACTTACC 59.707 44.000 24.41 0.00 0.00 2.85
624 659 5.277250 CGTACGAGTCTATCAGAACTTACCC 60.277 48.000 10.44 0.00 0.00 3.69
625 660 4.857679 ACGAGTCTATCAGAACTTACCCT 58.142 43.478 0.00 0.00 0.00 4.34
626 661 4.641094 ACGAGTCTATCAGAACTTACCCTG 59.359 45.833 0.00 0.00 0.00 4.45
627 662 4.641094 CGAGTCTATCAGAACTTACCCTGT 59.359 45.833 0.00 0.00 0.00 4.00
628 663 5.821470 CGAGTCTATCAGAACTTACCCTGTA 59.179 44.000 0.00 0.00 0.00 2.74
629 664 6.318144 CGAGTCTATCAGAACTTACCCTGTAA 59.682 42.308 0.00 0.00 0.00 2.41
630 665 7.148120 CGAGTCTATCAGAACTTACCCTGTAAA 60.148 40.741 0.00 0.00 0.00 2.01
631 666 8.431910 AGTCTATCAGAACTTACCCTGTAAAA 57.568 34.615 0.00 0.00 0.00 1.52
632 667 8.312564 AGTCTATCAGAACTTACCCTGTAAAAC 58.687 37.037 0.00 0.00 0.00 2.43
633 668 8.092687 GTCTATCAGAACTTACCCTGTAAAACA 58.907 37.037 0.00 0.00 0.00 2.83
634 669 8.822805 TCTATCAGAACTTACCCTGTAAAACAT 58.177 33.333 0.00 0.00 0.00 2.71
635 670 9.449719 CTATCAGAACTTACCCTGTAAAACATT 57.550 33.333 0.00 0.00 0.00 2.71
637 672 9.802039 ATCAGAACTTACCCTGTAAAACATTAA 57.198 29.630 0.00 0.00 0.00 1.40
638 673 9.629878 TCAGAACTTACCCTGTAAAACATTAAA 57.370 29.630 0.00 0.00 0.00 1.52
645 680 9.699703 TTACCCTGTAAAACATTAAATTTCTGC 57.300 29.630 0.00 0.00 0.00 4.26
646 681 7.158697 ACCCTGTAAAACATTAAATTTCTGCC 58.841 34.615 0.00 0.00 0.00 4.85
647 682 7.158021 CCCTGTAAAACATTAAATTTCTGCCA 58.842 34.615 0.00 0.00 0.00 4.92
648 683 7.331687 CCCTGTAAAACATTAAATTTCTGCCAG 59.668 37.037 0.00 0.00 0.00 4.85
649 684 7.872483 CCTGTAAAACATTAAATTTCTGCCAGT 59.128 33.333 0.00 0.00 0.00 4.00
650 685 9.906660 CTGTAAAACATTAAATTTCTGCCAGTA 57.093 29.630 0.00 0.00 0.00 2.74
651 686 9.906660 TGTAAAACATTAAATTTCTGCCAGTAG 57.093 29.630 0.00 0.00 0.00 2.57
652 687 9.353999 GTAAAACATTAAATTTCTGCCAGTAGG 57.646 33.333 0.00 0.00 38.23 3.18
653 688 6.530019 AACATTAAATTTCTGCCAGTAGGG 57.470 37.500 0.00 0.00 40.85 3.53
654 689 5.826643 ACATTAAATTTCTGCCAGTAGGGA 58.173 37.500 0.00 0.00 40.01 4.20
665 700 5.609533 TGCCAGTAGGGAGTAGATTTAAC 57.390 43.478 0.00 0.00 40.01 2.01
666 701 5.278061 TGCCAGTAGGGAGTAGATTTAACT 58.722 41.667 0.00 0.00 40.01 2.24
667 702 6.437755 TGCCAGTAGGGAGTAGATTTAACTA 58.562 40.000 0.00 0.00 40.01 2.24
668 703 6.550108 TGCCAGTAGGGAGTAGATTTAACTAG 59.450 42.308 0.00 0.00 40.01 2.57
669 704 6.517027 GCCAGTAGGGAGTAGATTTAACTAGC 60.517 46.154 0.00 0.00 40.01 3.42
670 705 6.778559 CCAGTAGGGAGTAGATTTAACTAGCT 59.221 42.308 0.00 0.00 40.01 3.32
671 706 7.943447 CCAGTAGGGAGTAGATTTAACTAGCTA 59.057 40.741 0.00 0.00 40.01 3.32
672 707 9.352191 CAGTAGGGAGTAGATTTAACTAGCTAA 57.648 37.037 0.00 0.00 0.00 3.09
673 708 9.353431 AGTAGGGAGTAGATTTAACTAGCTAAC 57.647 37.037 0.00 0.00 0.00 2.34
674 709 9.353431 GTAGGGAGTAGATTTAACTAGCTAACT 57.647 37.037 0.00 0.00 0.00 2.24
675 710 8.240267 AGGGAGTAGATTTAACTAGCTAACTG 57.760 38.462 0.00 0.00 0.00 3.16
676 711 7.288158 AGGGAGTAGATTTAACTAGCTAACTGG 59.712 40.741 0.00 0.00 0.00 4.00
677 712 7.287235 GGGAGTAGATTTAACTAGCTAACTGGA 59.713 40.741 0.00 0.00 0.00 3.86
678 713 8.693625 GGAGTAGATTTAACTAGCTAACTGGAA 58.306 37.037 0.00 0.00 0.00 3.53
680 715 9.872721 AGTAGATTTAACTAGCTAACTGGAAAC 57.127 33.333 0.00 0.00 0.00 2.78
681 716 9.649167 GTAGATTTAACTAGCTAACTGGAAACA 57.351 33.333 0.00 0.00 39.59 2.83
683 718 9.740710 AGATTTAACTAGCTAACTGGAAACAAT 57.259 29.630 0.00 0.00 42.06 2.71
687 722 7.817418 AACTAGCTAACTGGAAACAATTTCA 57.183 32.000 0.00 0.00 42.06 2.69
688 723 7.440523 ACTAGCTAACTGGAAACAATTTCAG 57.559 36.000 0.00 0.00 42.06 3.02
689 724 5.712152 AGCTAACTGGAAACAATTTCAGG 57.288 39.130 3.87 0.00 42.06 3.86
690 725 5.385198 AGCTAACTGGAAACAATTTCAGGA 58.615 37.500 3.87 0.00 42.06 3.86
691 726 5.833131 AGCTAACTGGAAACAATTTCAGGAA 59.167 36.000 3.87 0.00 42.06 3.36
692 727 6.015940 AGCTAACTGGAAACAATTTCAGGAAG 60.016 38.462 3.87 0.58 42.06 3.46
693 728 6.239036 GCTAACTGGAAACAATTTCAGGAAGT 60.239 38.462 3.87 0.00 42.06 3.01
694 729 5.520376 ACTGGAAACAATTTCAGGAAGTG 57.480 39.130 3.87 0.00 42.06 3.16
695 730 4.202151 ACTGGAAACAATTTCAGGAAGTGC 60.202 41.667 3.87 0.00 42.06 4.40
696 731 3.960102 TGGAAACAATTTCAGGAAGTGCT 59.040 39.130 3.87 0.00 41.43 4.40
697 732 4.202141 TGGAAACAATTTCAGGAAGTGCTG 60.202 41.667 3.87 0.00 41.43 4.41
698 733 3.375782 AACAATTTCAGGAAGTGCTGC 57.624 42.857 0.00 0.00 36.83 5.25
699 734 2.309613 ACAATTTCAGGAAGTGCTGCA 58.690 42.857 0.00 0.00 36.83 4.41
700 735 2.694628 ACAATTTCAGGAAGTGCTGCAA 59.305 40.909 2.77 0.00 36.83 4.08
701 736 3.132646 ACAATTTCAGGAAGTGCTGCAAA 59.867 39.130 2.77 0.00 36.83 3.68
702 737 4.121317 CAATTTCAGGAAGTGCTGCAAAA 58.879 39.130 2.77 0.00 0.00 2.44
703 738 3.883830 TTTCAGGAAGTGCTGCAAAAA 57.116 38.095 2.77 0.00 0.00 1.94
724 759 6.790232 AAAACAAAAGGAAGACAAGGATCA 57.210 33.333 0.00 0.00 0.00 2.92
725 760 5.774498 AACAAAAGGAAGACAAGGATCAC 57.226 39.130 0.00 0.00 0.00 3.06
726 761 3.815401 ACAAAAGGAAGACAAGGATCACG 59.185 43.478 0.00 0.00 0.00 4.35
727 762 4.065088 CAAAAGGAAGACAAGGATCACGA 58.935 43.478 0.00 0.00 0.00 4.35
728 763 4.559862 AAAGGAAGACAAGGATCACGAT 57.440 40.909 0.00 0.00 0.00 3.73
729 764 3.533606 AGGAAGACAAGGATCACGATG 57.466 47.619 0.00 0.00 0.00 3.84
730 765 2.169352 AGGAAGACAAGGATCACGATGG 59.831 50.000 0.00 0.00 0.00 3.51
731 766 1.936547 GAAGACAAGGATCACGATGGC 59.063 52.381 0.00 0.00 0.00 4.40
732 767 0.179100 AGACAAGGATCACGATGGCG 60.179 55.000 0.00 0.00 44.79 5.69
773 808 4.999939 GTGCGGCAAAAGGCGTGG 63.000 66.667 3.23 0.00 46.16 4.94
1531 2512 0.736325 GGACAACACCGACGAGGATG 60.736 60.000 8.56 0.00 45.00 3.51
1532 2513 0.242825 GACAACACCGACGAGGATGA 59.757 55.000 8.56 0.00 45.00 2.92
1533 2514 0.895530 ACAACACCGACGAGGATGAT 59.104 50.000 8.56 0.00 45.00 2.45
1534 2515 1.280982 CAACACCGACGAGGATGATG 58.719 55.000 8.56 5.01 45.00 3.07
1535 2516 1.135112 CAACACCGACGAGGATGATGA 60.135 52.381 8.56 0.00 45.00 2.92
1536 2517 1.403814 ACACCGACGAGGATGATGAT 58.596 50.000 8.56 0.00 45.00 2.45
1653 2671 5.241064 TCGAACTATCTATCTAGTTGCACCC 59.759 44.000 1.47 0.00 41.00 4.61
1775 2845 0.249238 ATTTTTGCGCGCTGTTGGAA 60.249 45.000 33.29 14.36 0.00 3.53
1864 2937 3.579626 GACGCACGGCAAAGCTGTC 62.580 63.158 0.00 0.00 45.94 3.51
1905 2978 1.005340 CGCCTGTTGAAGATGCTCTC 58.995 55.000 0.00 0.00 0.00 3.20
1910 2983 1.348696 TGTTGAAGATGCTCTCAGGCA 59.651 47.619 0.00 0.00 46.63 4.75
1911 2984 1.736681 GTTGAAGATGCTCTCAGGCAC 59.263 52.381 0.00 0.00 45.36 5.01
1912 2985 1.273759 TGAAGATGCTCTCAGGCACT 58.726 50.000 0.00 0.00 45.36 4.40
1923 2996 3.408229 AGGCACTGGGATGGTCAG 58.592 61.111 0.00 0.00 37.18 3.51
1924 2997 1.229625 AGGCACTGGGATGGTCAGA 60.230 57.895 0.00 0.00 37.18 3.27
1925 2998 1.078143 GGCACTGGGATGGTCAGAC 60.078 63.158 0.00 0.00 36.22 3.51
1926 2999 1.448540 GCACTGGGATGGTCAGACG 60.449 63.158 0.00 0.00 36.22 4.18
1927 3000 1.219124 CACTGGGATGGTCAGACGG 59.781 63.158 0.00 0.00 36.22 4.79
1928 3001 1.990060 ACTGGGATGGTCAGACGGG 60.990 63.158 0.00 0.00 36.22 5.28
1929 3002 2.687200 TGGGATGGTCAGACGGGG 60.687 66.667 0.00 0.00 0.00 5.73
1930 3003 2.365105 GGGATGGTCAGACGGGGA 60.365 66.667 0.00 0.00 0.00 4.81
1931 3004 2.435693 GGGATGGTCAGACGGGGAG 61.436 68.421 0.00 0.00 0.00 4.30
1932 3005 2.435693 GGATGGTCAGACGGGGAGG 61.436 68.421 0.00 0.00 0.00 4.30
1933 3006 1.686110 GATGGTCAGACGGGGAGGT 60.686 63.158 0.00 0.00 0.00 3.85
1934 3007 1.961180 GATGGTCAGACGGGGAGGTG 61.961 65.000 0.00 0.00 0.00 4.00
1935 3008 2.283676 GGTCAGACGGGGAGGTGA 60.284 66.667 0.00 0.00 0.00 4.02
1936 3009 1.686110 GGTCAGACGGGGAGGTGAT 60.686 63.158 0.00 0.00 0.00 3.06
1937 3010 1.517832 GTCAGACGGGGAGGTGATG 59.482 63.158 0.00 0.00 0.00 3.07
1938 3011 2.187946 CAGACGGGGAGGTGATGC 59.812 66.667 0.00 0.00 0.00 3.91
1939 3012 3.461773 AGACGGGGAGGTGATGCG 61.462 66.667 0.00 0.00 0.00 4.73
1940 3013 4.530857 GACGGGGAGGTGATGCGG 62.531 72.222 0.00 0.00 0.00 5.69
1946 3019 4.899239 GAGGTGATGCGGCCGGAG 62.899 72.222 29.38 0.00 0.00 4.63
1951 3024 4.508128 GATGCGGCCGGAGTCGAA 62.508 66.667 29.38 0.00 39.00 3.71
1952 3025 4.514577 ATGCGGCCGGAGTCGAAG 62.515 66.667 29.38 0.00 39.00 3.79
1957 3030 4.821589 GCCGGAGTCGAAGCCCTG 62.822 72.222 5.05 0.00 39.00 4.45
1958 3031 4.821589 CCGGAGTCGAAGCCCTGC 62.822 72.222 0.00 0.00 39.00 4.85
1959 3032 3.764466 CGGAGTCGAAGCCCTGCT 61.764 66.667 0.00 0.00 42.56 4.24
1960 3033 2.185608 GGAGTCGAAGCCCTGCTC 59.814 66.667 0.00 0.00 38.25 4.26
1961 3034 2.185608 GAGTCGAAGCCCTGCTCC 59.814 66.667 0.00 0.00 38.25 4.70
1962 3035 3.378399 GAGTCGAAGCCCTGCTCCC 62.378 68.421 0.00 0.00 38.25 4.30
1963 3036 3.394836 GTCGAAGCCCTGCTCCCT 61.395 66.667 0.00 0.00 38.25 4.20
1964 3037 3.077556 TCGAAGCCCTGCTCCCTC 61.078 66.667 0.00 0.00 38.25 4.30
1965 3038 4.168291 CGAAGCCCTGCTCCCTCC 62.168 72.222 0.00 0.00 38.25 4.30
1966 3039 2.690510 GAAGCCCTGCTCCCTCCT 60.691 66.667 0.00 0.00 38.25 3.69
1967 3040 3.013932 AAGCCCTGCTCCCTCCTG 61.014 66.667 0.00 0.00 38.25 3.86
1968 3041 3.569361 AAGCCCTGCTCCCTCCTGA 62.569 63.158 0.00 0.00 38.25 3.86
1969 3042 2.771762 GCCCTGCTCCCTCCTGAT 60.772 66.667 0.00 0.00 0.00 2.90
1970 3043 3.117452 GCCCTGCTCCCTCCTGATG 62.117 68.421 0.00 0.00 0.00 3.07
1971 3044 2.509916 CCTGCTCCCTCCTGATGC 59.490 66.667 0.00 0.00 0.00 3.91
1972 3045 2.108566 CTGCTCCCTCCTGATGCG 59.891 66.667 0.00 0.00 0.00 4.73
1973 3046 2.685017 TGCTCCCTCCTGATGCGT 60.685 61.111 0.00 0.00 0.00 5.24
1974 3047 2.107953 GCTCCCTCCTGATGCGTC 59.892 66.667 0.00 0.00 0.00 5.19
1975 3048 2.725312 GCTCCCTCCTGATGCGTCA 61.725 63.158 8.64 8.64 0.00 4.35
1976 3049 1.142748 CTCCCTCCTGATGCGTCAC 59.857 63.158 3.97 0.00 0.00 3.67
1977 3050 1.607801 CTCCCTCCTGATGCGTCACA 61.608 60.000 3.97 0.00 0.00 3.58
1978 3051 1.448540 CCCTCCTGATGCGTCACAC 60.449 63.158 3.97 0.00 0.00 3.82
1979 3052 1.448540 CCTCCTGATGCGTCACACC 60.449 63.158 3.97 0.00 0.00 4.16
1980 3053 1.807165 CTCCTGATGCGTCACACCG 60.807 63.158 3.97 0.00 0.00 4.94
1989 3062 4.760047 GTCACACCGCGGGCATCT 62.760 66.667 31.76 4.28 0.00 2.90
1990 3063 4.015406 TCACACCGCGGGCATCTT 62.015 61.111 31.76 3.35 0.00 2.40
1991 3064 3.499737 CACACCGCGGGCATCTTC 61.500 66.667 31.76 0.00 0.00 2.87
1992 3065 3.706373 ACACCGCGGGCATCTTCT 61.706 61.111 31.76 1.49 0.00 2.85
1993 3066 2.892425 CACCGCGGGCATCTTCTC 60.892 66.667 31.76 0.00 0.00 2.87
1994 3067 3.077556 ACCGCGGGCATCTTCTCT 61.078 61.111 31.76 0.00 0.00 3.10
1995 3068 2.587194 CCGCGGGCATCTTCTCTG 60.587 66.667 20.10 0.00 0.00 3.35
1996 3069 2.185350 CGCGGGCATCTTCTCTGT 59.815 61.111 0.00 0.00 0.00 3.41
1997 3070 1.880340 CGCGGGCATCTTCTCTGTC 60.880 63.158 0.00 0.00 0.00 3.51
1998 3071 1.880340 GCGGGCATCTTCTCTGTCG 60.880 63.158 0.00 0.00 0.00 4.35
1999 3072 1.227089 CGGGCATCTTCTCTGTCGG 60.227 63.158 0.00 0.00 0.00 4.79
2000 3073 1.901085 GGGCATCTTCTCTGTCGGT 59.099 57.895 0.00 0.00 0.00 4.69
2001 3074 0.460987 GGGCATCTTCTCTGTCGGTG 60.461 60.000 0.00 0.00 0.00 4.94
2002 3075 0.460987 GGCATCTTCTCTGTCGGTGG 60.461 60.000 0.00 0.00 0.00 4.61
2003 3076 1.086634 GCATCTTCTCTGTCGGTGGC 61.087 60.000 0.00 0.00 0.00 5.01
2004 3077 0.803768 CATCTTCTCTGTCGGTGGCG 60.804 60.000 0.00 0.00 0.00 5.69
2005 3078 2.564553 ATCTTCTCTGTCGGTGGCGC 62.565 60.000 0.00 0.00 0.00 6.53
2006 3079 4.373116 TTCTCTGTCGGTGGCGCC 62.373 66.667 22.73 22.73 0.00 6.53
2021 3094 4.785453 GCCCTCGCTTCCTGGGTG 62.785 72.222 0.00 0.00 42.77 4.61
2039 3112 0.243907 TGCTCTGTCGCCTTCACTAC 59.756 55.000 0.00 0.00 0.00 2.73
2063 3136 4.939439 GGTAGTATTTCTTTCTTCCGCCAA 59.061 41.667 0.00 0.00 0.00 4.52
2077 3150 8.570068 TTCTTCCGCCAAATACTTTAACTTAT 57.430 30.769 0.00 0.00 0.00 1.73
2078 3151 9.669887 TTCTTCCGCCAAATACTTTAACTTATA 57.330 29.630 0.00 0.00 0.00 0.98
2079 3152 9.101655 TCTTCCGCCAAATACTTTAACTTATAC 57.898 33.333 0.00 0.00 0.00 1.47
2109 3182 2.479275 CTCATCTTCAGGCATGCATACG 59.521 50.000 21.36 0.98 0.00 3.06
2122 3195 3.815337 TGCATACGCGTATTTGTTTGT 57.185 38.095 28.35 3.79 42.97 2.83
2123 3196 4.148563 TGCATACGCGTATTTGTTTGTT 57.851 36.364 28.35 2.99 42.97 2.83
2124 3197 3.908978 TGCATACGCGTATTTGTTTGTTG 59.091 39.130 28.35 16.46 42.97 3.33
2125 3198 4.152526 GCATACGCGTATTTGTTTGTTGA 58.847 39.130 28.35 0.00 0.00 3.18
2126 3199 4.791163 GCATACGCGTATTTGTTTGTTGAT 59.209 37.500 28.35 2.51 0.00 2.57
2127 3200 5.960683 GCATACGCGTATTTGTTTGTTGATA 59.039 36.000 28.35 0.00 0.00 2.15
2142 3215 9.256477 TGTTTGTTGATATTGATACTATCGTCC 57.744 33.333 0.00 0.00 0.00 4.79
2148 3221 3.620929 TTGATACTATCGTCCGTGCTC 57.379 47.619 0.00 0.00 0.00 4.26
2150 3223 3.211865 TGATACTATCGTCCGTGCTCTT 58.788 45.455 0.00 0.00 0.00 2.85
2151 3224 3.630769 TGATACTATCGTCCGTGCTCTTT 59.369 43.478 0.00 0.00 0.00 2.52
2152 3225 2.563471 ACTATCGTCCGTGCTCTTTC 57.437 50.000 0.00 0.00 0.00 2.62
2156 3243 1.241165 TCGTCCGTGCTCTTTCTGTA 58.759 50.000 0.00 0.00 0.00 2.74
2162 3249 3.119459 TCCGTGCTCTTTCTGTATCTGTC 60.119 47.826 0.00 0.00 0.00 3.51
2166 3253 5.101628 GTGCTCTTTCTGTATCTGTCTCTG 58.898 45.833 0.00 0.00 0.00 3.35
2168 3255 5.946377 TGCTCTTTCTGTATCTGTCTCTGTA 59.054 40.000 0.00 0.00 0.00 2.74
2175 3262 7.208225 TCTGTATCTGTCTCTGTATACATGC 57.792 40.000 5.91 0.00 35.05 4.06
2179 3266 9.131791 TGTATCTGTCTCTGTATACATGCTTTA 57.868 33.333 5.91 0.00 31.60 1.85
2186 3273 9.081997 GTCTCTGTATACATGCTTTATATGAGC 57.918 37.037 5.91 6.09 40.53 4.26
2207 3294 5.671493 AGCACTGTTTTGAGTGTTACTAGT 58.329 37.500 0.00 0.00 44.53 2.57
2212 3299 5.893687 TGTTTTGAGTGTTACTAGTCGTCA 58.106 37.500 0.00 0.00 0.00 4.35
2216 3303 8.333186 GTTTTGAGTGTTACTAGTCGTCAAAAT 58.667 33.333 21.27 5.38 41.72 1.82
2226 3313 4.900635 AGTCGTCAAAATCAAGCAACTT 57.099 36.364 0.00 0.00 0.00 2.66
2227 3314 6.704493 ACTAGTCGTCAAAATCAAGCAACTTA 59.296 34.615 0.00 0.00 0.00 2.24
2234 3321 7.646130 CGTCAAAATCAAGCAACTTAAACCTTA 59.354 33.333 0.00 0.00 0.00 2.69
2268 3359 5.121768 GTGTTTACTAACCCAGCAGTGTATG 59.878 44.000 0.00 0.00 33.15 2.39
2304 3415 1.496060 ATGCAGGTCCGAGGATAACA 58.504 50.000 0.00 0.00 0.00 2.41
2321 3432 1.984570 CAGTCCCGAGGAGCCTGAA 60.985 63.158 0.00 0.00 30.34 3.02
2358 3469 1.742880 GATCTGCACAAGCTCGGCA 60.743 57.895 6.71 6.71 42.74 5.69
2451 3565 2.283298 CACAAGCCTGCATAGTGGTAG 58.717 52.381 0.00 0.00 0.00 3.18
2452 3566 1.909302 ACAAGCCTGCATAGTGGTAGT 59.091 47.619 0.00 0.00 0.00 2.73
2453 3567 3.104512 ACAAGCCTGCATAGTGGTAGTA 58.895 45.455 0.00 0.00 0.00 1.82
2454 3568 3.711704 ACAAGCCTGCATAGTGGTAGTAT 59.288 43.478 0.00 0.00 0.00 2.12
2455 3569 4.899457 ACAAGCCTGCATAGTGGTAGTATA 59.101 41.667 0.00 0.00 0.00 1.47
2456 3570 5.221461 ACAAGCCTGCATAGTGGTAGTATAC 60.221 44.000 0.00 0.00 42.04 1.47
2521 3637 4.314961 ACACATTTATCAGCACTTGTCGA 58.685 39.130 0.00 0.00 0.00 4.20
2537 3653 2.750166 TGTCGAGTGAGAGAGGTTCATC 59.250 50.000 0.00 0.00 0.00 2.92
2557 3673 0.885879 TACCCATATCGTAGCTGCCG 59.114 55.000 0.00 0.00 0.00 5.69
2558 3674 0.826256 ACCCATATCGTAGCTGCCGA 60.826 55.000 11.93 11.93 38.89 5.54
2559 3675 0.532573 CCCATATCGTAGCTGCCGAT 59.467 55.000 21.68 21.68 46.07 4.18
2560 3676 1.633561 CCATATCGTAGCTGCCGATG 58.366 55.000 24.77 15.02 44.21 3.84
2561 3677 1.633561 CATATCGTAGCTGCCGATGG 58.366 55.000 24.77 16.32 44.21 3.51
2562 3678 1.067565 CATATCGTAGCTGCCGATGGT 60.068 52.381 24.77 14.79 44.21 3.55
2563 3679 0.313987 TATCGTAGCTGCCGATGGTG 59.686 55.000 24.77 0.00 44.21 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 69 0.043940 ATTGGGAGGAGAGACAGGCT 59.956 55.000 0.00 0.00 0.00 4.58
64 71 0.749649 CGATTGGGAGGAGAGACAGG 59.250 60.000 0.00 0.00 0.00 4.00
66 73 2.103373 CTTCGATTGGGAGGAGAGACA 58.897 52.381 0.00 0.00 0.00 3.41
148 162 3.194116 GCACAATCAATCAGGTGGAATGT 59.806 43.478 0.00 0.00 0.00 2.71
209 223 3.060020 CTCCGCTTGGCAATGGCAG 62.060 63.158 9.96 5.80 43.71 4.85
212 226 1.097547 CCTACTCCGCTTGGCAATGG 61.098 60.000 11.35 11.35 0.00 3.16
213 227 1.097547 CCCTACTCCGCTTGGCAATG 61.098 60.000 0.00 0.00 0.00 2.82
215 229 2.668632 CCCTACTCCGCTTGGCAA 59.331 61.111 0.00 0.00 0.00 4.52
216 230 4.096003 GCCCTACTCCGCTTGGCA 62.096 66.667 0.00 0.00 41.76 4.92
217 231 4.858680 GGCCCTACTCCGCTTGGC 62.859 72.222 0.00 0.00 41.42 4.52
218 232 3.083997 AGGCCCTACTCCGCTTGG 61.084 66.667 0.00 0.00 0.00 3.61
220 234 0.032416 TAAGAGGCCCTACTCCGCTT 60.032 55.000 0.00 3.71 44.17 4.68
222 236 1.740905 GTAAGAGGCCCTACTCCGC 59.259 63.158 0.00 0.00 38.26 5.54
223 237 0.106116 AGGTAAGAGGCCCTACTCCG 60.106 60.000 0.00 0.00 38.26 4.63
224 238 2.177811 AAGGTAAGAGGCCCTACTCC 57.822 55.000 0.00 0.00 38.26 3.85
232 247 3.070302 CCATGGAGACTAAGGTAAGAGGC 59.930 52.174 5.56 0.00 0.00 4.70
264 279 1.537562 GGTTAGCGATTCACCGGTAGG 60.538 57.143 6.87 0.00 42.33 3.18
265 280 1.849097 GGTTAGCGATTCACCGGTAG 58.151 55.000 6.87 1.53 42.33 3.18
267 282 4.926207 GGTTAGCGATTCACCGGT 57.074 55.556 0.00 0.00 43.13 5.28
270 285 1.087771 CCCACGGTTAGCGATTCACC 61.088 60.000 11.70 0.00 0.00 4.02
271 286 0.390735 ACCCACGGTTAGCGATTCAC 60.391 55.000 11.70 0.00 27.29 3.18
272 287 0.108520 GACCCACGGTTAGCGATTCA 60.109 55.000 11.70 0.00 35.25 2.57
280 295 2.225382 TCATCTCTGACCCACGGTTA 57.775 50.000 0.00 0.00 35.25 2.85
285 300 3.118629 TGCAGTATTCATCTCTGACCCAC 60.119 47.826 0.00 0.00 0.00 4.61
295 310 6.952743 ACAATCTTTCGATGCAGTATTCATC 58.047 36.000 0.00 0.00 35.33 2.92
306 321 9.590088 CACATACATCAATACAATCTTTCGATG 57.410 33.333 0.00 0.00 35.90 3.84
307 322 9.330063 ACACATACATCAATACAATCTTTCGAT 57.670 29.630 0.00 0.00 0.00 3.59
347 362 7.116075 ACCACACTGAGTAGTACTACAAAAA 57.884 36.000 29.87 14.01 38.48 1.94
350 365 7.822161 TTTACCACACTGAGTAGTACTACAA 57.178 36.000 29.87 18.58 38.48 2.41
351 366 7.822161 TTTTACCACACTGAGTAGTACTACA 57.178 36.000 29.87 13.21 38.48 2.74
352 367 8.302438 ACATTTTACCACACTGAGTAGTACTAC 58.698 37.037 23.03 23.03 34.74 2.73
354 369 7.299246 ACATTTTACCACACTGAGTAGTACT 57.701 36.000 1.37 1.37 34.74 2.73
364 380 3.181438 TGGGCTGTACATTTTACCACACT 60.181 43.478 0.00 0.00 0.00 3.55
365 381 3.057806 GTGGGCTGTACATTTTACCACAC 60.058 47.826 20.37 12.77 44.63 3.82
396 412 4.099881 ACCACTGCAATTCATGTTGTCTTT 59.900 37.500 0.00 0.00 0.00 2.52
421 437 4.307432 ACGAGTGAGGTAAGAAATGTGTG 58.693 43.478 0.00 0.00 0.00 3.82
427 454 8.365647 AGAAAGATAAACGAGTGAGGTAAGAAA 58.634 33.333 0.00 0.00 0.00 2.52
434 461 5.955488 TCAGAGAAAGATAAACGAGTGAGG 58.045 41.667 0.00 0.00 0.00 3.86
465 492 8.993121 CGCTACAAACTGATATCCAGAAATAAT 58.007 33.333 0.00 0.00 45.78 1.28
481 508 2.169832 ACAGTGATGCGCTACAAACT 57.830 45.000 9.73 2.30 31.28 2.66
548 583 6.946229 ACGCGTCTATATTTGGTAATCATC 57.054 37.500 5.58 0.00 0.00 2.92
549 584 7.330208 GGTTACGCGTCTATATTTGGTAATCAT 59.670 37.037 18.63 0.00 0.00 2.45
555 590 4.389890 TGGTTACGCGTCTATATTTGGT 57.610 40.909 18.63 0.00 0.00 3.67
561 596 4.469552 CGATCAATGGTTACGCGTCTATA 58.530 43.478 18.63 0.99 0.00 1.31
592 627 1.366679 TAGACTCGTACGTGCTCTGG 58.633 55.000 16.05 1.21 0.00 3.86
593 628 2.608090 TGATAGACTCGTACGTGCTCTG 59.392 50.000 16.05 2.84 0.00 3.35
594 629 2.867368 CTGATAGACTCGTACGTGCTCT 59.133 50.000 16.05 17.95 0.00 4.09
595 630 2.864946 TCTGATAGACTCGTACGTGCTC 59.135 50.000 16.05 12.34 0.00 4.26
596 631 2.902523 TCTGATAGACTCGTACGTGCT 58.097 47.619 16.05 15.42 0.00 4.40
597 632 3.063725 AGTTCTGATAGACTCGTACGTGC 59.936 47.826 16.05 9.12 0.00 5.34
598 633 4.861389 AGTTCTGATAGACTCGTACGTG 57.139 45.455 16.05 15.64 0.00 4.49
599 634 5.293079 GGTAAGTTCTGATAGACTCGTACGT 59.707 44.000 16.05 0.00 0.00 3.57
600 635 5.277250 GGGTAAGTTCTGATAGACTCGTACG 60.277 48.000 9.53 9.53 0.00 3.67
601 636 5.821995 AGGGTAAGTTCTGATAGACTCGTAC 59.178 44.000 0.00 0.00 0.00 3.67
602 637 5.821470 CAGGGTAAGTTCTGATAGACTCGTA 59.179 44.000 0.00 0.00 33.11 3.43
603 638 4.641094 CAGGGTAAGTTCTGATAGACTCGT 59.359 45.833 0.00 0.00 33.11 4.18
604 639 4.641094 ACAGGGTAAGTTCTGATAGACTCG 59.359 45.833 0.00 0.00 35.20 4.18
605 640 7.642082 TTACAGGGTAAGTTCTGATAGACTC 57.358 40.000 0.00 0.00 35.20 3.36
606 641 8.312564 GTTTTACAGGGTAAGTTCTGATAGACT 58.687 37.037 0.00 0.00 35.20 3.24
607 642 8.092687 TGTTTTACAGGGTAAGTTCTGATAGAC 58.907 37.037 0.00 0.00 35.20 2.59
608 643 8.197592 TGTTTTACAGGGTAAGTTCTGATAGA 57.802 34.615 0.00 0.00 35.20 1.98
609 644 9.449719 AATGTTTTACAGGGTAAGTTCTGATAG 57.550 33.333 0.00 0.00 35.20 2.08
611 646 9.802039 TTAATGTTTTACAGGGTAAGTTCTGAT 57.198 29.630 0.00 0.00 35.20 2.90
612 647 9.629878 TTTAATGTTTTACAGGGTAAGTTCTGA 57.370 29.630 0.00 0.00 35.20 3.27
619 654 9.699703 GCAGAAATTTAATGTTTTACAGGGTAA 57.300 29.630 0.00 0.00 0.00 2.85
620 655 8.308207 GGCAGAAATTTAATGTTTTACAGGGTA 58.692 33.333 0.00 0.00 0.00 3.69
621 656 7.158697 GGCAGAAATTTAATGTTTTACAGGGT 58.841 34.615 0.00 0.00 0.00 4.34
622 657 7.158021 TGGCAGAAATTTAATGTTTTACAGGG 58.842 34.615 0.00 0.00 0.00 4.45
623 658 7.872483 ACTGGCAGAAATTTAATGTTTTACAGG 59.128 33.333 23.66 0.00 0.00 4.00
624 659 8.816640 ACTGGCAGAAATTTAATGTTTTACAG 57.183 30.769 23.66 0.00 0.00 2.74
625 660 9.906660 CTACTGGCAGAAATTTAATGTTTTACA 57.093 29.630 23.66 0.00 0.00 2.41
626 661 9.353999 CCTACTGGCAGAAATTTAATGTTTTAC 57.646 33.333 23.66 0.00 0.00 2.01
627 662 8.527810 CCCTACTGGCAGAAATTTAATGTTTTA 58.472 33.333 23.66 0.00 0.00 1.52
628 663 7.234577 TCCCTACTGGCAGAAATTTAATGTTTT 59.765 33.333 23.66 0.00 0.00 2.43
629 664 6.723977 TCCCTACTGGCAGAAATTTAATGTTT 59.276 34.615 23.66 0.00 0.00 2.83
630 665 6.252995 TCCCTACTGGCAGAAATTTAATGTT 58.747 36.000 23.66 0.00 0.00 2.71
631 666 5.826643 TCCCTACTGGCAGAAATTTAATGT 58.173 37.500 23.66 0.00 0.00 2.71
632 667 5.888161 ACTCCCTACTGGCAGAAATTTAATG 59.112 40.000 23.66 5.18 0.00 1.90
633 668 6.079712 ACTCCCTACTGGCAGAAATTTAAT 57.920 37.500 23.66 0.00 0.00 1.40
634 669 5.514500 ACTCCCTACTGGCAGAAATTTAA 57.486 39.130 23.66 0.00 0.00 1.52
635 670 5.962031 TCTACTCCCTACTGGCAGAAATTTA 59.038 40.000 23.66 1.13 0.00 1.40
636 671 4.783227 TCTACTCCCTACTGGCAGAAATTT 59.217 41.667 23.66 0.00 0.00 1.82
637 672 4.362677 TCTACTCCCTACTGGCAGAAATT 58.637 43.478 23.66 0.12 0.00 1.82
638 673 3.995636 TCTACTCCCTACTGGCAGAAAT 58.004 45.455 23.66 0.55 0.00 2.17
639 674 3.468071 TCTACTCCCTACTGGCAGAAA 57.532 47.619 23.66 7.84 0.00 2.52
640 675 3.689872 ATCTACTCCCTACTGGCAGAA 57.310 47.619 23.66 0.00 0.00 3.02
641 676 3.689872 AATCTACTCCCTACTGGCAGA 57.310 47.619 23.66 3.89 0.00 4.26
642 677 5.364157 AGTTAAATCTACTCCCTACTGGCAG 59.636 44.000 14.16 14.16 0.00 4.85
643 678 5.278061 AGTTAAATCTACTCCCTACTGGCA 58.722 41.667 0.00 0.00 0.00 4.92
644 679 5.873146 AGTTAAATCTACTCCCTACTGGC 57.127 43.478 0.00 0.00 0.00 4.85
645 680 6.778559 AGCTAGTTAAATCTACTCCCTACTGG 59.221 42.308 0.00 0.00 0.00 4.00
646 681 7.826918 AGCTAGTTAAATCTACTCCCTACTG 57.173 40.000 0.00 0.00 0.00 2.74
647 682 9.353431 GTTAGCTAGTTAAATCTACTCCCTACT 57.647 37.037 0.06 0.00 0.00 2.57
648 683 9.353431 AGTTAGCTAGTTAAATCTACTCCCTAC 57.647 37.037 0.06 0.00 0.00 3.18
649 684 9.352191 CAGTTAGCTAGTTAAATCTACTCCCTA 57.648 37.037 0.06 0.00 0.00 3.53
650 685 7.288158 CCAGTTAGCTAGTTAAATCTACTCCCT 59.712 40.741 0.06 0.00 0.00 4.20
651 686 7.287235 TCCAGTTAGCTAGTTAAATCTACTCCC 59.713 40.741 0.06 0.00 0.00 4.30
652 687 8.235359 TCCAGTTAGCTAGTTAAATCTACTCC 57.765 38.462 0.06 0.00 0.00 3.85
654 689 9.872721 GTTTCCAGTTAGCTAGTTAAATCTACT 57.127 33.333 0.06 0.00 0.00 2.57
655 690 9.649167 TGTTTCCAGTTAGCTAGTTAAATCTAC 57.351 33.333 0.06 0.00 0.00 2.59
657 692 9.740710 ATTGTTTCCAGTTAGCTAGTTAAATCT 57.259 29.630 0.06 0.00 0.00 2.40
661 696 9.344772 TGAAATTGTTTCCAGTTAGCTAGTTAA 57.655 29.630 0.00 0.00 38.90 2.01
662 697 8.911918 TGAAATTGTTTCCAGTTAGCTAGTTA 57.088 30.769 0.00 0.00 38.90 2.24
663 698 7.040409 CCTGAAATTGTTTCCAGTTAGCTAGTT 60.040 37.037 0.00 0.00 38.90 2.24
664 699 6.431234 CCTGAAATTGTTTCCAGTTAGCTAGT 59.569 38.462 0.00 0.00 38.90 2.57
665 700 6.655003 TCCTGAAATTGTTTCCAGTTAGCTAG 59.345 38.462 0.00 0.00 38.90 3.42
666 701 6.539173 TCCTGAAATTGTTTCCAGTTAGCTA 58.461 36.000 0.00 0.00 38.90 3.32
667 702 5.385198 TCCTGAAATTGTTTCCAGTTAGCT 58.615 37.500 0.00 0.00 38.90 3.32
668 703 5.705609 TCCTGAAATTGTTTCCAGTTAGC 57.294 39.130 0.47 0.00 38.90 3.09
669 704 7.141363 CACTTCCTGAAATTGTTTCCAGTTAG 58.859 38.462 0.47 0.00 38.90 2.34
670 705 6.460953 GCACTTCCTGAAATTGTTTCCAGTTA 60.461 38.462 0.47 0.00 38.90 2.24
671 706 5.682212 GCACTTCCTGAAATTGTTTCCAGTT 60.682 40.000 0.47 0.00 38.90 3.16
672 707 4.202151 GCACTTCCTGAAATTGTTTCCAGT 60.202 41.667 0.47 0.00 38.90 4.00
673 708 4.038402 AGCACTTCCTGAAATTGTTTCCAG 59.962 41.667 0.47 0.00 38.90 3.86
674 709 3.960102 AGCACTTCCTGAAATTGTTTCCA 59.040 39.130 0.47 0.00 38.90 3.53
675 710 4.301628 CAGCACTTCCTGAAATTGTTTCC 58.698 43.478 0.47 0.00 38.90 3.13
676 711 3.737774 GCAGCACTTCCTGAAATTGTTTC 59.262 43.478 0.00 0.00 40.08 2.78
677 712 3.132646 TGCAGCACTTCCTGAAATTGTTT 59.867 39.130 0.00 0.00 34.77 2.83
678 713 2.694628 TGCAGCACTTCCTGAAATTGTT 59.305 40.909 0.00 0.00 34.77 2.83
679 714 2.309613 TGCAGCACTTCCTGAAATTGT 58.690 42.857 0.00 0.00 34.77 2.71
680 715 3.374220 TTGCAGCACTTCCTGAAATTG 57.626 42.857 0.00 0.00 34.77 2.32
681 716 4.405116 TTTTGCAGCACTTCCTGAAATT 57.595 36.364 0.00 0.00 34.77 1.82
682 717 4.405116 TTTTTGCAGCACTTCCTGAAAT 57.595 36.364 0.00 0.00 34.77 2.17
683 718 3.883830 TTTTTGCAGCACTTCCTGAAA 57.116 38.095 0.00 0.00 34.77 2.69
700 735 7.041721 GTGATCCTTGTCTTCCTTTTGTTTTT 58.958 34.615 0.00 0.00 0.00 1.94
701 736 6.573434 GTGATCCTTGTCTTCCTTTTGTTTT 58.427 36.000 0.00 0.00 0.00 2.43
702 737 5.221048 CGTGATCCTTGTCTTCCTTTTGTTT 60.221 40.000 0.00 0.00 0.00 2.83
703 738 4.275936 CGTGATCCTTGTCTTCCTTTTGTT 59.724 41.667 0.00 0.00 0.00 2.83
704 739 3.815401 CGTGATCCTTGTCTTCCTTTTGT 59.185 43.478 0.00 0.00 0.00 2.83
705 740 4.065088 TCGTGATCCTTGTCTTCCTTTTG 58.935 43.478 0.00 0.00 0.00 2.44
706 741 4.351874 TCGTGATCCTTGTCTTCCTTTT 57.648 40.909 0.00 0.00 0.00 2.27
707 742 4.256920 CATCGTGATCCTTGTCTTCCTTT 58.743 43.478 0.00 0.00 0.00 3.11
708 743 3.369892 CCATCGTGATCCTTGTCTTCCTT 60.370 47.826 0.00 0.00 0.00 3.36
709 744 2.169352 CCATCGTGATCCTTGTCTTCCT 59.831 50.000 0.00 0.00 0.00 3.36
710 745 2.555199 CCATCGTGATCCTTGTCTTCC 58.445 52.381 0.00 0.00 0.00 3.46
711 746 1.936547 GCCATCGTGATCCTTGTCTTC 59.063 52.381 0.00 0.00 0.00 2.87
712 747 1.740380 CGCCATCGTGATCCTTGTCTT 60.740 52.381 0.00 0.00 0.00 3.01
713 748 0.179100 CGCCATCGTGATCCTTGTCT 60.179 55.000 0.00 0.00 0.00 3.41
714 749 2.301505 CGCCATCGTGATCCTTGTC 58.698 57.895 0.00 0.00 0.00 3.18
715 750 4.521075 CGCCATCGTGATCCTTGT 57.479 55.556 0.00 0.00 0.00 3.16
725 760 0.855349 GCTCTGACATAACGCCATCG 59.145 55.000 0.00 0.00 42.43 3.84
726 761 1.939974 TGCTCTGACATAACGCCATC 58.060 50.000 0.00 0.00 0.00 3.51
727 762 2.103771 AGATGCTCTGACATAACGCCAT 59.896 45.455 0.00 0.00 0.00 4.40
728 763 1.482182 AGATGCTCTGACATAACGCCA 59.518 47.619 0.00 0.00 0.00 5.69
729 764 2.131183 GAGATGCTCTGACATAACGCC 58.869 52.381 0.00 0.00 0.00 5.68
730 765 2.131183 GGAGATGCTCTGACATAACGC 58.869 52.381 0.00 0.00 0.00 4.84
731 766 3.443099 TGGAGATGCTCTGACATAACG 57.557 47.619 0.00 0.00 0.00 3.18
732 767 4.507710 TGTTGGAGATGCTCTGACATAAC 58.492 43.478 0.00 0.00 0.00 1.89
733 768 4.383444 CCTGTTGGAGATGCTCTGACATAA 60.383 45.833 0.00 0.00 34.57 1.90
734 769 3.133542 CCTGTTGGAGATGCTCTGACATA 59.866 47.826 0.00 0.00 34.57 2.29
735 770 2.093075 CCTGTTGGAGATGCTCTGACAT 60.093 50.000 0.00 0.00 34.57 3.06
736 771 1.277273 CCTGTTGGAGATGCTCTGACA 59.723 52.381 0.00 0.00 34.57 3.58
737 772 1.277557 ACCTGTTGGAGATGCTCTGAC 59.722 52.381 0.00 0.00 37.04 3.51
738 773 1.277273 CACCTGTTGGAGATGCTCTGA 59.723 52.381 0.00 0.00 37.04 3.27
739 774 1.735386 CACCTGTTGGAGATGCTCTG 58.265 55.000 0.00 0.00 37.04 3.35
771 806 2.627737 AAATTTTACCGCGCGGCCA 61.628 52.632 46.22 32.45 39.32 5.36
773 808 2.155819 CCAAATTTTACCGCGCGGC 61.156 57.895 46.22 0.00 39.32 6.53
807 843 4.379243 CTGGAGCGCGGAACCAGT 62.379 66.667 25.68 0.03 44.06 4.00
947 1058 4.681978 GCGAGGTGGCGAGGTTGT 62.682 66.667 0.00 0.00 0.00 3.32
1531 2512 2.998670 CGCTACCATCATCACCATCATC 59.001 50.000 0.00 0.00 0.00 2.92
1532 2513 2.634453 TCGCTACCATCATCACCATCAT 59.366 45.455 0.00 0.00 0.00 2.45
1533 2514 2.038659 TCGCTACCATCATCACCATCA 58.961 47.619 0.00 0.00 0.00 3.07
1534 2515 2.036475 AGTCGCTACCATCATCACCATC 59.964 50.000 0.00 0.00 0.00 3.51
1535 2516 2.042464 AGTCGCTACCATCATCACCAT 58.958 47.619 0.00 0.00 0.00 3.55
1536 2517 1.485124 AGTCGCTACCATCATCACCA 58.515 50.000 0.00 0.00 0.00 4.17
1828 2901 0.892755 TCTATCGTCTGGTTTGGCGT 59.107 50.000 0.00 0.00 0.00 5.68
1905 2978 1.077930 CTGACCATCCCAGTGCCTG 60.078 63.158 0.00 0.00 0.00 4.85
1910 2983 1.990060 CCCGTCTGACCATCCCAGT 60.990 63.158 1.55 0.00 33.57 4.00
1911 2984 2.735772 CCCCGTCTGACCATCCCAG 61.736 68.421 1.55 0.00 0.00 4.45
1912 2985 2.687200 CCCCGTCTGACCATCCCA 60.687 66.667 1.55 0.00 0.00 4.37
1913 2986 2.365105 TCCCCGTCTGACCATCCC 60.365 66.667 1.55 0.00 0.00 3.85
1915 2988 1.686110 ACCTCCCCGTCTGACCATC 60.686 63.158 1.55 0.00 0.00 3.51
1916 2989 1.990060 CACCTCCCCGTCTGACCAT 60.990 63.158 1.55 0.00 0.00 3.55
1917 2990 2.455960 ATCACCTCCCCGTCTGACCA 62.456 60.000 1.55 0.00 0.00 4.02
1918 2991 1.686110 ATCACCTCCCCGTCTGACC 60.686 63.158 1.55 0.00 0.00 4.02
1919 2992 1.517832 CATCACCTCCCCGTCTGAC 59.482 63.158 0.00 0.00 0.00 3.51
1920 2993 2.359169 GCATCACCTCCCCGTCTGA 61.359 63.158 0.00 0.00 0.00 3.27
1921 2994 2.187946 GCATCACCTCCCCGTCTG 59.812 66.667 0.00 0.00 0.00 3.51
1922 2995 3.461773 CGCATCACCTCCCCGTCT 61.462 66.667 0.00 0.00 0.00 4.18
1923 2996 4.530857 CCGCATCACCTCCCCGTC 62.531 72.222 0.00 0.00 0.00 4.79
1929 3002 4.899239 CTCCGGCCGCATCACCTC 62.899 72.222 22.85 0.00 0.00 3.85
1934 3007 4.508128 TTCGACTCCGGCCGCATC 62.508 66.667 22.85 15.38 36.24 3.91
1935 3008 4.514577 CTTCGACTCCGGCCGCAT 62.515 66.667 22.85 6.69 36.24 4.73
1940 3013 4.821589 CAGGGCTTCGACTCCGGC 62.822 72.222 0.00 0.00 36.24 6.13
1941 3014 4.821589 GCAGGGCTTCGACTCCGG 62.822 72.222 0.00 0.00 36.24 5.14
1942 3015 3.708220 GAGCAGGGCTTCGACTCCG 62.708 68.421 0.00 0.00 39.88 4.63
1943 3016 2.185608 GAGCAGGGCTTCGACTCC 59.814 66.667 0.00 0.00 39.88 3.85
1944 3017 2.185608 GGAGCAGGGCTTCGACTC 59.814 66.667 0.00 0.00 39.88 3.36
1945 3018 3.394836 GGGAGCAGGGCTTCGACT 61.395 66.667 0.00 0.00 39.88 4.18
1946 3019 3.378399 GAGGGAGCAGGGCTTCGAC 62.378 68.421 0.00 0.00 39.88 4.20
1947 3020 3.077556 GAGGGAGCAGGGCTTCGA 61.078 66.667 0.00 0.00 39.88 3.71
1948 3021 4.168291 GGAGGGAGCAGGGCTTCG 62.168 72.222 0.00 0.00 39.88 3.79
1949 3022 2.690510 AGGAGGGAGCAGGGCTTC 60.691 66.667 0.00 0.00 39.88 3.86
1950 3023 2.854420 ATCAGGAGGGAGCAGGGCTT 62.854 60.000 0.00 0.00 39.88 4.35
1951 3024 3.344511 ATCAGGAGGGAGCAGGGCT 62.345 63.158 0.00 0.00 43.88 5.19
1952 3025 2.771762 ATCAGGAGGGAGCAGGGC 60.772 66.667 0.00 0.00 0.00 5.19
1953 3026 3.117452 GCATCAGGAGGGAGCAGGG 62.117 68.421 0.00 0.00 0.00 4.45
1954 3027 2.509916 GCATCAGGAGGGAGCAGG 59.490 66.667 0.00 0.00 0.00 4.85
1955 3028 2.108566 CGCATCAGGAGGGAGCAG 59.891 66.667 0.00 0.00 0.00 4.24
1956 3029 2.685017 ACGCATCAGGAGGGAGCA 60.685 61.111 0.00 0.00 0.00 4.26
1957 3030 2.107953 GACGCATCAGGAGGGAGC 59.892 66.667 0.00 0.00 0.00 4.70
1958 3031 1.142748 GTGACGCATCAGGAGGGAG 59.857 63.158 0.00 0.00 34.75 4.30
1959 3032 1.609210 TGTGACGCATCAGGAGGGA 60.609 57.895 0.00 0.00 34.75 4.20
1960 3033 1.448540 GTGTGACGCATCAGGAGGG 60.449 63.158 0.00 0.00 34.75 4.30
1961 3034 1.448540 GGTGTGACGCATCAGGAGG 60.449 63.158 0.00 0.00 34.75 4.30
1962 3035 1.807165 CGGTGTGACGCATCAGGAG 60.807 63.158 0.00 0.00 34.75 3.69
1963 3036 2.261361 CGGTGTGACGCATCAGGA 59.739 61.111 0.00 0.00 34.75 3.86
1972 3045 4.760047 AGATGCCCGCGGTGTGAC 62.760 66.667 26.12 11.22 0.00 3.67
1973 3046 3.950794 GAAGATGCCCGCGGTGTGA 62.951 63.158 26.12 4.59 0.00 3.58
1974 3047 3.499737 GAAGATGCCCGCGGTGTG 61.500 66.667 26.12 10.30 0.00 3.82
1975 3048 3.665675 GAGAAGATGCCCGCGGTGT 62.666 63.158 26.12 9.37 0.00 4.16
1976 3049 2.892425 GAGAAGATGCCCGCGGTG 60.892 66.667 26.12 16.79 0.00 4.94
1977 3050 3.077556 AGAGAAGATGCCCGCGGT 61.078 61.111 26.12 5.12 0.00 5.68
1978 3051 2.587194 CAGAGAAGATGCCCGCGG 60.587 66.667 21.04 21.04 0.00 6.46
1979 3052 1.880340 GACAGAGAAGATGCCCGCG 60.880 63.158 0.00 0.00 0.00 6.46
1980 3053 1.880340 CGACAGAGAAGATGCCCGC 60.880 63.158 0.00 0.00 0.00 6.13
1981 3054 1.227089 CCGACAGAGAAGATGCCCG 60.227 63.158 0.00 0.00 0.00 6.13
1982 3055 0.460987 CACCGACAGAGAAGATGCCC 60.461 60.000 0.00 0.00 0.00 5.36
1983 3056 0.460987 CCACCGACAGAGAAGATGCC 60.461 60.000 0.00 0.00 0.00 4.40
1984 3057 1.086634 GCCACCGACAGAGAAGATGC 61.087 60.000 0.00 0.00 0.00 3.91
1985 3058 0.803768 CGCCACCGACAGAGAAGATG 60.804 60.000 0.00 0.00 36.29 2.90
1986 3059 1.513158 CGCCACCGACAGAGAAGAT 59.487 57.895 0.00 0.00 36.29 2.40
1987 3060 2.962569 CGCCACCGACAGAGAAGA 59.037 61.111 0.00 0.00 36.29 2.87
1988 3061 2.811317 GCGCCACCGACAGAGAAG 60.811 66.667 0.00 0.00 36.29 2.85
1989 3062 4.373116 GGCGCCACCGACAGAGAA 62.373 66.667 24.80 0.00 43.64 2.87
2004 3077 4.785453 CACCCAGGAAGCGAGGGC 62.785 72.222 0.00 0.00 46.88 5.19
2006 3079 3.672295 GAGCACCCAGGAAGCGAGG 62.672 68.421 0.00 0.00 0.00 4.63
2007 3080 2.125350 GAGCACCCAGGAAGCGAG 60.125 66.667 0.00 0.00 0.00 5.03
2008 3081 2.604686 AGAGCACCCAGGAAGCGA 60.605 61.111 0.00 0.00 0.00 4.93
2009 3082 2.435586 CAGAGCACCCAGGAAGCG 60.436 66.667 0.00 0.00 0.00 4.68
2010 3083 1.376553 GACAGAGCACCCAGGAAGC 60.377 63.158 0.00 0.00 0.00 3.86
2011 3084 1.079543 CGACAGAGCACCCAGGAAG 60.080 63.158 0.00 0.00 0.00 3.46
2012 3085 3.059982 CGACAGAGCACCCAGGAA 58.940 61.111 0.00 0.00 0.00 3.36
2013 3086 3.695606 GCGACAGAGCACCCAGGA 61.696 66.667 0.00 0.00 37.05 3.86
2014 3087 4.767255 GGCGACAGAGCACCCAGG 62.767 72.222 0.00 0.00 39.27 4.45
2015 3088 3.245668 AAGGCGACAGAGCACCCAG 62.246 63.158 0.00 0.00 39.27 4.45
2016 3089 3.240134 GAAGGCGACAGAGCACCCA 62.240 63.158 0.00 0.00 39.27 4.51
2017 3090 2.435059 GAAGGCGACAGAGCACCC 60.435 66.667 0.00 0.00 39.27 4.61
2018 3091 2.029844 GTGAAGGCGACAGAGCACC 61.030 63.158 0.00 0.00 39.27 5.01
2021 3094 0.798771 CGTAGTGAAGGCGACAGAGC 60.799 60.000 0.00 0.00 0.00 4.09
2039 3112 3.554731 GGCGGAAGAAAGAAATACTACCG 59.445 47.826 0.00 0.00 40.60 4.02
2077 3150 6.424032 TGCCTGAAGATGAGTAAGTAGAGTA 58.576 40.000 0.00 0.00 0.00 2.59
2078 3151 5.265191 TGCCTGAAGATGAGTAAGTAGAGT 58.735 41.667 0.00 0.00 0.00 3.24
2079 3152 5.843673 TGCCTGAAGATGAGTAAGTAGAG 57.156 43.478 0.00 0.00 0.00 2.43
2086 3159 3.851458 ATGCATGCCTGAAGATGAGTA 57.149 42.857 16.68 0.00 0.00 2.59
2109 3182 9.716507 AGTATCAATATCAACAAACAAATACGC 57.283 29.630 0.00 0.00 0.00 4.42
2136 3209 0.603569 ACAGAAAGAGCACGGACGAT 59.396 50.000 0.00 0.00 0.00 3.73
2137 3210 1.241165 TACAGAAAGAGCACGGACGA 58.759 50.000 0.00 0.00 0.00 4.20
2140 3213 2.826128 ACAGATACAGAAAGAGCACGGA 59.174 45.455 0.00 0.00 0.00 4.69
2142 3215 4.101942 GAGACAGATACAGAAAGAGCACG 58.898 47.826 0.00 0.00 0.00 5.34
2148 3221 9.676195 CATGTATACAGAGACAGATACAGAAAG 57.324 37.037 11.91 0.00 37.98 2.62
2150 3223 7.503902 AGCATGTATACAGAGACAGATACAGAA 59.496 37.037 11.91 0.00 37.98 3.02
2151 3224 7.001073 AGCATGTATACAGAGACAGATACAGA 58.999 38.462 11.91 0.00 37.98 3.41
2152 3225 7.213216 AGCATGTATACAGAGACAGATACAG 57.787 40.000 11.91 0.00 37.98 2.74
2162 3249 8.992835 TGCTCATATAAAGCATGTATACAGAG 57.007 34.615 11.91 8.96 44.51 3.35
2175 3262 7.810658 ACACTCAAAACAGTGCTCATATAAAG 58.189 34.615 0.42 0.00 46.81 1.85
2179 3266 6.936900 AGTAACACTCAAAACAGTGCTCATAT 59.063 34.615 0.42 0.00 46.81 1.78
2194 3281 6.741109 TGATTTTGACGACTAGTAACACTCA 58.259 36.000 0.00 0.00 0.00 3.41
2207 3294 5.974751 GGTTTAAGTTGCTTGATTTTGACGA 59.025 36.000 0.00 0.00 0.00 4.20
2245 3332 3.849563 ACACTGCTGGGTTAGTAAACA 57.150 42.857 0.00 0.00 37.34 2.83
2246 3333 5.796350 CATACACTGCTGGGTTAGTAAAC 57.204 43.478 2.98 0.00 34.66 2.01
2268 3359 6.459066 ACCTGCATATATATATGACCGATGC 58.541 40.000 29.13 18.25 42.05 3.91
2304 3415 1.684049 CTTCAGGCTCCTCGGGACT 60.684 63.158 0.00 0.00 0.00 3.85
2321 3432 3.314331 CTCCACAGGACGCCCACT 61.314 66.667 0.00 0.00 33.88 4.00
2451 3565 1.411041 ACCTCGCCTCCAAGGTATAC 58.589 55.000 0.00 0.00 44.12 1.47
2452 3566 2.037144 GAACCTCGCCTCCAAGGTATA 58.963 52.381 0.00 0.00 45.21 1.47
2453 3567 0.831307 GAACCTCGCCTCCAAGGTAT 59.169 55.000 0.00 0.00 45.21 2.73
2454 3568 0.252103 AGAACCTCGCCTCCAAGGTA 60.252 55.000 0.00 0.00 45.21 3.08
2456 3570 0.674895 CAAGAACCTCGCCTCCAAGG 60.675 60.000 0.00 0.00 38.80 3.61
2521 3637 3.011821 TGGGTAGATGAACCTCTCTCACT 59.988 47.826 0.00 0.00 39.65 3.41
2537 3653 1.135373 CGGCAGCTACGATATGGGTAG 60.135 57.143 4.11 6.28 40.23 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.