Multiple sequence alignment - TraesCS4A01G333500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G333500 chr4A 100.000 3255 0 0 1 3255 617000184 617003438 0.000000e+00 6011.0
1 TraesCS4A01G333500 chr4A 85.165 364 47 6 1931 2291 617047098 617047457 1.850000e-97 366.0
2 TraesCS4A01G333500 chr4A 81.065 338 59 5 1464 1799 617043291 617043625 6.920000e-67 265.0
3 TraesCS4A01G333500 chr4A 77.606 259 29 16 907 1138 617042404 617042660 2.640000e-26 130.0
4 TraesCS4A01G333500 chr4A 100.000 28 0 0 1858 1885 737865919 737865892 6.000000e-03 52.8
5 TraesCS4A01G333500 chr4A 100.000 28 0 0 1858 1885 738056231 738056258 6.000000e-03 52.8
6 TraesCS4A01G333500 chr5B 92.638 2024 101 21 748 2725 703174106 703172085 0.000000e+00 2868.0
7 TraesCS4A01G333500 chr5B 89.037 903 89 8 1886 2785 703168794 703167899 0.000000e+00 1110.0
8 TraesCS4A01G333500 chr5B 88.235 714 77 5 1886 2596 703141396 703140687 0.000000e+00 846.0
9 TraesCS4A01G333500 chr5B 89.429 473 41 5 1387 1853 703169265 703168796 3.620000e-164 588.0
10 TraesCS4A01G333500 chr5B 88.330 437 46 4 1420 1853 703141832 703141398 1.340000e-143 520.0
11 TraesCS4A01G333500 chr5B 88.342 386 20 14 748 1109 703169936 703169552 1.070000e-119 440.0
12 TraesCS4A01G333500 chr5B 86.472 377 51 0 1894 2270 703097140 703096764 6.500000e-112 414.0
13 TraesCS4A01G333500 chr5B 86.686 338 26 11 386 707 703174554 703174220 1.110000e-94 357.0
14 TraesCS4A01G333500 chr5B 88.732 142 11 2 574 710 703170181 703170040 5.590000e-38 169.0
15 TraesCS4A01G333500 chr5B 83.824 136 16 4 1010 1139 703231514 703231379 1.230000e-24 124.0
16 TraesCS4A01G333500 chr5B 95.238 63 3 0 514 576 703170528 703170466 2.070000e-17 100.0
17 TraesCS4A01G333500 chr5B 93.333 60 3 1 349 408 703182617 703182559 1.610000e-13 87.9
18 TraesCS4A01G333500 chr5D 92.530 1767 83 17 748 2488 550612675 550610932 0.000000e+00 2486.0
19 TraesCS4A01G333500 chr5D 93.532 402 22 3 2713 3114 550603506 550603109 2.160000e-166 595.0
20 TraesCS4A01G333500 chr5D 85.000 400 57 3 1893 2291 550578770 550578373 1.410000e-108 403.0
21 TraesCS4A01G333500 chr5D 79.847 392 74 3 1411 1799 550638298 550637909 6.880000e-72 281.0
22 TraesCS4A01G333500 chr5D 80.734 327 55 7 13 332 59940628 59940303 6.970000e-62 248.0
23 TraesCS4A01G333500 chr5D 79.701 335 59 5 5 332 541527978 541527646 1.950000e-57 233.0
24 TraesCS4A01G333500 chr5D 91.613 155 10 3 3104 3255 550599187 550599033 9.150000e-51 211.0
25 TraesCS4A01G333500 chr5D 88.421 95 8 1 1008 1099 550579973 550579879 9.550000e-21 111.0
26 TraesCS4A01G333500 chr5D 100.000 28 0 0 1858 1885 330709232 330709259 6.000000e-03 52.8
27 TraesCS4A01G333500 chr6D 87.967 241 28 1 2 241 466388473 466388713 1.910000e-72 283.0
28 TraesCS4A01G333500 chr2D 80.606 330 56 6 5 327 6081371 6081043 6.970000e-62 248.0
29 TraesCS4A01G333500 chr2D 80.422 332 57 6 1 326 25973768 25974097 2.510000e-61 246.0
30 TraesCS4A01G333500 chr2D 80.357 336 55 8 5 332 372514858 372514526 9.020000e-61 244.0
31 TraesCS4A01G333500 chr2B 80.117 342 58 7 1 333 212179846 212179506 2.510000e-61 246.0
32 TraesCS4A01G333500 chr1D 80.240 334 58 4 7 333 79802929 79802597 9.020000e-61 244.0
33 TraesCS4A01G333500 chr1D 96.774 31 1 0 1858 1888 230670242 230670212 6.000000e-03 52.8
34 TraesCS4A01G333500 chr3B 79.300 343 62 7 1 336 75973457 75973797 7.020000e-57 231.0
35 TraesCS4A01G333500 chr4B 93.182 44 1 2 1347 1388 655753323 655753280 2.710000e-06 63.9
36 TraesCS4A01G333500 chr3D 100.000 29 0 0 1858 1886 554334420 554334392 2.000000e-03 54.7
37 TraesCS4A01G333500 chr1B 94.444 36 1 1 1858 1893 668960008 668960042 2.000000e-03 54.7
38 TraesCS4A01G333500 chr7D 100.000 28 0 0 1858 1885 5023130 5023157 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G333500 chr4A 617000184 617003438 3254 False 6011.000000 6011 100.000000 1 3255 1 chr4A.!!$F1 3254
1 TraesCS4A01G333500 chr4A 617042404 617047457 5053 False 253.666667 366 81.278667 907 2291 3 chr4A.!!$F3 1384
2 TraesCS4A01G333500 chr5B 703167899 703174554 6655 True 804.571429 2868 90.014571 386 2785 7 chr5B.!!$R5 2399
3 TraesCS4A01G333500 chr5B 703140687 703141832 1145 True 683.000000 846 88.282500 1420 2596 2 chr5B.!!$R4 1176
4 TraesCS4A01G333500 chr5D 550610932 550612675 1743 True 2486.000000 2486 92.530000 748 2488 1 chr5D.!!$R3 1740
5 TraesCS4A01G333500 chr5D 550599033 550603506 4473 True 403.000000 595 92.572500 2713 3255 2 chr5D.!!$R6 542
6 TraesCS4A01G333500 chr5D 550578373 550579973 1600 True 257.000000 403 86.710500 1008 2291 2 chr5D.!!$R5 1283

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
327 328 0.038166 ACCATGCTCACCAAATCCGT 59.962 50.0 0.0 0.0 0.0 4.69 F
339 340 0.108329 AAATCCGTGTCCGCCTGTAG 60.108 55.0 0.0 0.0 0.0 2.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2026 6037 1.826921 CTGCATGATGTCCAGCCCC 60.827 63.158 0.00 0.00 0.00 5.80 R
2284 6298 6.683974 TCGCTATCGATTGATCATCAGATA 57.316 37.500 11.17 5.44 40.21 1.98 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 8.429237 AACAATTCTACAATTTTGGGGTATCA 57.571 30.769 0.00 0.00 28.97 2.15
27 28 8.429237 ACAATTCTACAATTTTGGGGTATCAA 57.571 30.769 0.00 0.00 28.97 2.57
28 29 8.875168 ACAATTCTACAATTTTGGGGTATCAAA 58.125 29.630 0.00 0.00 35.15 2.69
29 30 9.150348 CAATTCTACAATTTTGGGGTATCAAAC 57.850 33.333 0.00 0.00 36.49 2.93
30 31 8.664669 ATTCTACAATTTTGGGGTATCAAACT 57.335 30.769 0.00 0.00 36.49 2.66
31 32 8.485578 TTCTACAATTTTGGGGTATCAAACTT 57.514 30.769 0.00 0.00 36.49 2.66
32 33 7.891561 TCTACAATTTTGGGGTATCAAACTTG 58.108 34.615 14.44 14.44 45.00 3.16
33 34 5.863965 ACAATTTTGGGGTATCAAACTTGG 58.136 37.500 17.91 6.74 44.39 3.61
34 35 5.368230 ACAATTTTGGGGTATCAAACTTGGT 59.632 36.000 17.91 7.15 44.39 3.67
35 36 6.126623 ACAATTTTGGGGTATCAAACTTGGTT 60.127 34.615 17.91 3.27 44.39 3.67
36 37 4.946478 TTTGGGGTATCAAACTTGGTTG 57.054 40.909 0.00 0.00 32.39 3.77
37 38 3.885976 TGGGGTATCAAACTTGGTTGA 57.114 42.857 3.44 3.44 41.59 3.18
38 39 3.492337 TGGGGTATCAAACTTGGTTGAC 58.508 45.455 2.99 0.00 40.22 3.18
39 40 2.823747 GGGGTATCAAACTTGGTTGACC 59.176 50.000 2.99 2.37 40.22 4.02
40 41 3.492337 GGGTATCAAACTTGGTTGACCA 58.508 45.455 2.99 0.00 45.94 4.02
41 42 4.086457 GGGTATCAAACTTGGTTGACCAT 58.914 43.478 3.28 0.00 46.97 3.55
42 43 4.526650 GGGTATCAAACTTGGTTGACCATT 59.473 41.667 3.28 0.00 46.97 3.16
43 44 5.336451 GGGTATCAAACTTGGTTGACCATTC 60.336 44.000 3.28 0.00 46.97 2.67
44 45 5.476945 GGTATCAAACTTGGTTGACCATTCT 59.523 40.000 3.28 0.00 46.97 2.40
45 46 6.015434 GGTATCAAACTTGGTTGACCATTCTT 60.015 38.462 3.28 0.00 46.97 2.52
46 47 5.930837 TCAAACTTGGTTGACCATTCTTT 57.069 34.783 3.28 0.00 46.97 2.52
47 48 6.293004 TCAAACTTGGTTGACCATTCTTTT 57.707 33.333 3.28 0.00 46.97 2.27
48 49 6.337356 TCAAACTTGGTTGACCATTCTTTTC 58.663 36.000 3.28 0.00 46.97 2.29
49 50 5.930837 AACTTGGTTGACCATTCTTTTCA 57.069 34.783 3.28 0.00 46.97 2.69
50 51 5.262588 ACTTGGTTGACCATTCTTTTCAC 57.737 39.130 3.28 0.00 46.97 3.18
51 52 4.709397 ACTTGGTTGACCATTCTTTTCACA 59.291 37.500 3.28 0.00 46.97 3.58
52 53 5.363580 ACTTGGTTGACCATTCTTTTCACAT 59.636 36.000 3.28 0.00 46.97 3.21
53 54 5.199024 TGGTTGACCATTCTTTTCACATG 57.801 39.130 0.00 0.00 42.01 3.21
54 55 4.039004 TGGTTGACCATTCTTTTCACATGG 59.961 41.667 0.00 0.00 42.01 3.66
55 56 4.559153 GTTGACCATTCTTTTCACATGGG 58.441 43.478 0.00 0.00 41.74 4.00
56 57 4.111255 TGACCATTCTTTTCACATGGGA 57.889 40.909 0.00 0.00 41.74 4.37
57 58 4.478203 TGACCATTCTTTTCACATGGGAA 58.522 39.130 6.21 6.21 41.74 3.97
58 59 4.523943 TGACCATTCTTTTCACATGGGAAG 59.476 41.667 10.89 0.00 41.74 3.46
59 60 4.482990 ACCATTCTTTTCACATGGGAAGT 58.517 39.130 10.89 0.40 41.74 3.01
60 61 4.901250 ACCATTCTTTTCACATGGGAAGTT 59.099 37.500 10.89 0.00 41.74 2.66
61 62 5.366477 ACCATTCTTTTCACATGGGAAGTTT 59.634 36.000 10.89 0.00 41.74 2.66
62 63 5.697633 CCATTCTTTTCACATGGGAAGTTTG 59.302 40.000 10.89 5.96 34.80 2.93
63 64 6.462768 CCATTCTTTTCACATGGGAAGTTTGA 60.463 38.462 10.89 5.36 34.80 2.69
64 65 6.729690 TTCTTTTCACATGGGAAGTTTGAT 57.270 33.333 10.89 0.00 0.00 2.57
65 66 6.088016 TCTTTTCACATGGGAAGTTTGATG 57.912 37.500 10.89 0.00 0.00 3.07
66 67 5.598005 TCTTTTCACATGGGAAGTTTGATGT 59.402 36.000 10.89 0.00 0.00 3.06
67 68 6.775142 TCTTTTCACATGGGAAGTTTGATGTA 59.225 34.615 10.89 0.00 0.00 2.29
68 69 6.573664 TTTCACATGGGAAGTTTGATGTAG 57.426 37.500 10.89 0.00 0.00 2.74
69 70 5.497464 TCACATGGGAAGTTTGATGTAGA 57.503 39.130 0.00 0.00 0.00 2.59
70 71 5.875224 TCACATGGGAAGTTTGATGTAGAA 58.125 37.500 0.00 0.00 0.00 2.10
71 72 6.303054 TCACATGGGAAGTTTGATGTAGAAA 58.697 36.000 0.00 0.00 0.00 2.52
72 73 6.947733 TCACATGGGAAGTTTGATGTAGAAAT 59.052 34.615 0.00 0.00 0.00 2.17
73 74 8.106462 TCACATGGGAAGTTTGATGTAGAAATA 58.894 33.333 0.00 0.00 0.00 1.40
74 75 8.739039 CACATGGGAAGTTTGATGTAGAAATAA 58.261 33.333 0.00 0.00 0.00 1.40
75 76 8.739972 ACATGGGAAGTTTGATGTAGAAATAAC 58.260 33.333 0.00 0.00 0.00 1.89
76 77 8.739039 CATGGGAAGTTTGATGTAGAAATAACA 58.261 33.333 0.00 0.00 0.00 2.41
77 78 8.877864 TGGGAAGTTTGATGTAGAAATAACAT 57.122 30.769 0.00 0.00 40.23 2.71
88 89 8.603242 ATGTAGAAATAACATCCGTGGTATTC 57.397 34.615 0.00 0.00 45.23 1.75
89 90 7.788026 TGTAGAAATAACATCCGTGGTATTCT 58.212 34.615 0.00 0.00 45.23 2.40
90 91 8.262227 TGTAGAAATAACATCCGTGGTATTCTT 58.738 33.333 0.00 0.00 45.23 2.52
91 92 9.754382 GTAGAAATAACATCCGTGGTATTCTTA 57.246 33.333 0.00 0.00 45.23 2.10
92 93 8.888579 AGAAATAACATCCGTGGTATTCTTAG 57.111 34.615 0.00 0.00 45.23 2.18
93 94 8.483758 AGAAATAACATCCGTGGTATTCTTAGT 58.516 33.333 0.00 0.00 45.23 2.24
94 95 8.433421 AAATAACATCCGTGGTATTCTTAGTG 57.567 34.615 0.00 0.00 45.23 2.74
95 96 5.670792 AACATCCGTGGTATTCTTAGTGA 57.329 39.130 0.00 0.00 0.00 3.41
96 97 5.670792 ACATCCGTGGTATTCTTAGTGAA 57.329 39.130 0.00 0.00 39.24 3.18
97 98 5.661458 ACATCCGTGGTATTCTTAGTGAAG 58.339 41.667 0.00 0.00 38.18 3.02
98 99 5.421056 ACATCCGTGGTATTCTTAGTGAAGA 59.579 40.000 0.00 0.00 40.04 2.87
111 112 7.843490 TCTTAGTGAAGAAAATACAATCGGG 57.157 36.000 0.00 0.00 38.80 5.14
112 113 6.821665 TCTTAGTGAAGAAAATACAATCGGGG 59.178 38.462 0.00 0.00 38.80 5.73
113 114 5.174037 AGTGAAGAAAATACAATCGGGGA 57.826 39.130 0.00 0.00 0.00 4.81
114 115 4.941873 AGTGAAGAAAATACAATCGGGGAC 59.058 41.667 0.00 0.00 0.00 4.46
115 116 4.941873 GTGAAGAAAATACAATCGGGGACT 59.058 41.667 0.00 0.00 0.00 3.85
116 117 5.414765 GTGAAGAAAATACAATCGGGGACTT 59.585 40.000 0.00 0.00 0.00 3.01
117 118 6.596497 GTGAAGAAAATACAATCGGGGACTTA 59.404 38.462 0.00 0.00 0.00 2.24
118 119 6.596497 TGAAGAAAATACAATCGGGGACTTAC 59.404 38.462 0.00 0.00 0.00 2.34
119 120 6.309389 AGAAAATACAATCGGGGACTTACT 57.691 37.500 0.00 0.00 0.00 2.24
120 121 7.427989 AGAAAATACAATCGGGGACTTACTA 57.572 36.000 0.00 0.00 0.00 1.82
121 122 8.030913 AGAAAATACAATCGGGGACTTACTAT 57.969 34.615 0.00 0.00 0.00 2.12
122 123 8.491958 AGAAAATACAATCGGGGACTTACTATT 58.508 33.333 0.00 0.00 0.00 1.73
123 124 8.672823 AAAATACAATCGGGGACTTACTATTC 57.327 34.615 0.00 0.00 0.00 1.75
124 125 6.989155 ATACAATCGGGGACTTACTATTCA 57.011 37.500 0.00 0.00 0.00 2.57
125 126 5.888982 ACAATCGGGGACTTACTATTCAT 57.111 39.130 0.00 0.00 0.00 2.57
126 127 6.248569 ACAATCGGGGACTTACTATTCATT 57.751 37.500 0.00 0.00 0.00 2.57
127 128 7.369551 ACAATCGGGGACTTACTATTCATTA 57.630 36.000 0.00 0.00 0.00 1.90
128 129 7.798071 ACAATCGGGGACTTACTATTCATTAA 58.202 34.615 0.00 0.00 0.00 1.40
129 130 8.269317 ACAATCGGGGACTTACTATTCATTAAA 58.731 33.333 0.00 0.00 0.00 1.52
130 131 8.557029 CAATCGGGGACTTACTATTCATTAAAC 58.443 37.037 0.00 0.00 0.00 2.01
131 132 7.185318 TCGGGGACTTACTATTCATTAAACA 57.815 36.000 0.00 0.00 0.00 2.83
132 133 7.622713 TCGGGGACTTACTATTCATTAAACAA 58.377 34.615 0.00 0.00 0.00 2.83
133 134 8.269317 TCGGGGACTTACTATTCATTAAACAAT 58.731 33.333 0.00 0.00 0.00 2.71
134 135 8.342634 CGGGGACTTACTATTCATTAAACAATG 58.657 37.037 0.00 0.00 0.00 2.82
135 136 9.185680 GGGGACTTACTATTCATTAAACAATGT 57.814 33.333 0.00 0.00 0.00 2.71
167 168 5.580911 AGCTTCGATTTTGTCATTTTTGC 57.419 34.783 0.00 0.00 0.00 3.68
168 169 4.448732 AGCTTCGATTTTGTCATTTTTGCC 59.551 37.500 0.00 0.00 0.00 4.52
169 170 4.448732 GCTTCGATTTTGTCATTTTTGCCT 59.551 37.500 0.00 0.00 0.00 4.75
170 171 5.633182 GCTTCGATTTTGTCATTTTTGCCTA 59.367 36.000 0.00 0.00 0.00 3.93
171 172 6.183360 GCTTCGATTTTGTCATTTTTGCCTAG 60.183 38.462 0.00 0.00 0.00 3.02
172 173 6.567687 TCGATTTTGTCATTTTTGCCTAGA 57.432 33.333 0.00 0.00 0.00 2.43
173 174 6.976088 TCGATTTTGTCATTTTTGCCTAGAA 58.024 32.000 0.00 0.00 0.00 2.10
174 175 7.601856 TCGATTTTGTCATTTTTGCCTAGAAT 58.398 30.769 0.00 0.00 0.00 2.40
175 176 8.735315 TCGATTTTGTCATTTTTGCCTAGAATA 58.265 29.630 0.00 0.00 0.00 1.75
176 177 8.798153 CGATTTTGTCATTTTTGCCTAGAATAC 58.202 33.333 0.00 0.00 0.00 1.89
177 178 9.087424 GATTTTGTCATTTTTGCCTAGAATACC 57.913 33.333 0.00 0.00 0.00 2.73
178 179 7.531857 TTTGTCATTTTTGCCTAGAATACCA 57.468 32.000 0.00 0.00 0.00 3.25
179 180 6.509418 TGTCATTTTTGCCTAGAATACCAC 57.491 37.500 0.00 0.00 0.00 4.16
180 181 5.123186 TGTCATTTTTGCCTAGAATACCACG 59.877 40.000 0.00 0.00 0.00 4.94
181 182 5.353123 GTCATTTTTGCCTAGAATACCACGA 59.647 40.000 0.00 0.00 0.00 4.35
182 183 5.941058 TCATTTTTGCCTAGAATACCACGAA 59.059 36.000 0.00 0.00 0.00 3.85
183 184 6.601613 TCATTTTTGCCTAGAATACCACGAAT 59.398 34.615 0.00 0.00 0.00 3.34
184 185 5.811399 TTTTGCCTAGAATACCACGAATG 57.189 39.130 0.00 0.00 0.00 2.67
185 186 4.481368 TTGCCTAGAATACCACGAATGT 57.519 40.909 0.00 0.00 0.00 2.71
186 187 4.054780 TGCCTAGAATACCACGAATGTC 57.945 45.455 0.00 0.00 0.00 3.06
187 188 3.449377 TGCCTAGAATACCACGAATGTCA 59.551 43.478 0.00 0.00 0.00 3.58
188 189 4.100963 TGCCTAGAATACCACGAATGTCAT 59.899 41.667 0.00 0.00 0.00 3.06
189 190 5.057149 GCCTAGAATACCACGAATGTCATT 58.943 41.667 0.00 0.00 0.00 2.57
190 191 5.527582 GCCTAGAATACCACGAATGTCATTT 59.472 40.000 0.00 0.00 0.00 2.32
191 192 6.292919 GCCTAGAATACCACGAATGTCATTTC 60.293 42.308 0.00 0.00 0.00 2.17
192 193 6.986817 CCTAGAATACCACGAATGTCATTTCT 59.013 38.462 0.00 0.00 0.00 2.52
193 194 7.495934 CCTAGAATACCACGAATGTCATTTCTT 59.504 37.037 0.00 0.00 0.00 2.52
194 195 7.687941 AGAATACCACGAATGTCATTTCTTT 57.312 32.000 0.00 0.00 0.00 2.52
195 196 7.530010 AGAATACCACGAATGTCATTTCTTTG 58.470 34.615 0.00 0.00 0.00 2.77
196 197 6.817765 ATACCACGAATGTCATTTCTTTGT 57.182 33.333 0.00 0.00 0.00 2.83
197 198 4.858935 ACCACGAATGTCATTTCTTTGTG 58.141 39.130 0.00 4.66 0.00 3.33
198 199 4.578516 ACCACGAATGTCATTTCTTTGTGA 59.421 37.500 0.00 0.00 0.00 3.58
199 200 5.067153 ACCACGAATGTCATTTCTTTGTGAA 59.933 36.000 0.00 0.00 0.00 3.18
211 212 6.667981 TTTCTTTGTGAAATTTCATACGCG 57.332 33.333 23.05 3.53 39.50 6.01
212 213 4.717991 TCTTTGTGAAATTTCATACGCGG 58.282 39.130 23.05 11.78 39.73 6.46
213 214 3.479505 TTGTGAAATTTCATACGCGGG 57.520 42.857 23.05 0.00 39.73 6.13
214 215 2.428491 TGTGAAATTTCATACGCGGGT 58.572 42.857 23.05 10.91 39.73 5.28
215 216 3.597255 TGTGAAATTTCATACGCGGGTA 58.403 40.909 23.05 15.21 39.73 3.69
216 217 4.193090 TGTGAAATTTCATACGCGGGTAT 58.807 39.130 23.05 18.52 39.96 2.73
217 218 5.358090 TGTGAAATTTCATACGCGGGTATA 58.642 37.500 23.05 10.05 37.24 1.47
218 219 5.234757 TGTGAAATTTCATACGCGGGTATAC 59.765 40.000 23.05 15.46 37.24 1.47
219 220 4.751098 TGAAATTTCATACGCGGGTATACC 59.249 41.667 22.92 13.99 37.24 2.73
220 221 4.339872 AATTTCATACGCGGGTATACCA 57.660 40.909 22.92 11.07 37.24 3.25
221 222 3.374220 TTTCATACGCGGGTATACCAG 57.626 47.619 22.92 20.07 37.24 4.00
222 223 2.275134 TCATACGCGGGTATACCAGA 57.725 50.000 24.27 14.03 37.24 3.86
223 224 1.881973 TCATACGCGGGTATACCAGAC 59.118 52.381 24.27 14.40 37.24 3.51
224 225 0.877071 ATACGCGGGTATACCAGACG 59.123 55.000 24.27 24.77 37.58 4.18
225 226 0.179059 TACGCGGGTATACCAGACGA 60.179 55.000 29.78 18.06 40.22 4.20
226 227 1.009222 CGCGGGTATACCAGACGAC 60.009 63.158 24.27 12.73 40.22 4.34
227 228 1.442526 CGCGGGTATACCAGACGACT 61.443 60.000 24.27 0.00 40.22 4.18
228 229 1.597742 GCGGGTATACCAGACGACTA 58.402 55.000 24.27 0.00 40.22 2.59
229 230 2.157738 GCGGGTATACCAGACGACTAT 58.842 52.381 24.27 0.00 40.22 2.12
230 231 2.095364 GCGGGTATACCAGACGACTATG 60.095 54.545 24.27 2.32 40.22 2.23
231 232 3.144506 CGGGTATACCAGACGACTATGT 58.855 50.000 23.33 0.00 40.22 2.29
232 233 4.318332 CGGGTATACCAGACGACTATGTA 58.682 47.826 23.33 0.00 40.22 2.29
233 234 4.940046 CGGGTATACCAGACGACTATGTAT 59.060 45.833 23.33 11.72 40.22 2.29
234 235 5.163784 CGGGTATACCAGACGACTATGTATG 60.164 48.000 23.33 0.00 40.22 2.39
235 236 5.709164 GGGTATACCAGACGACTATGTATGT 59.291 44.000 23.33 0.20 39.85 2.29
236 237 6.208204 GGGTATACCAGACGACTATGTATGTT 59.792 42.308 23.33 0.00 39.85 2.71
237 238 7.391554 GGGTATACCAGACGACTATGTATGTTA 59.608 40.741 23.33 0.00 39.85 2.41
238 239 8.233190 GGTATACCAGACGACTATGTATGTTAC 58.767 40.741 17.44 8.41 35.64 2.50
239 240 7.812690 ATACCAGACGACTATGTATGTTACA 57.187 36.000 7.93 0.00 43.80 2.41
240 241 6.519679 ACCAGACGACTATGTATGTTACAA 57.480 37.500 0.00 0.00 42.76 2.41
241 242 7.108841 ACCAGACGACTATGTATGTTACAAT 57.891 36.000 0.00 0.00 42.76 2.71
242 243 7.553334 ACCAGACGACTATGTATGTTACAATT 58.447 34.615 0.00 0.00 42.76 2.32
243 244 8.038944 ACCAGACGACTATGTATGTTACAATTT 58.961 33.333 0.00 0.00 42.76 1.82
244 245 8.879759 CCAGACGACTATGTATGTTACAATTTT 58.120 33.333 0.00 0.00 42.76 1.82
296 297 9.672086 TTGTTTCGAATTTACTATTCACAAAGG 57.328 29.630 0.00 0.00 0.00 3.11
297 298 9.058174 TGTTTCGAATTTACTATTCACAAAGGA 57.942 29.630 0.00 0.00 0.00 3.36
300 301 7.693952 TCGAATTTACTATTCACAAAGGATGC 58.306 34.615 0.00 0.00 0.00 3.91
301 302 6.628856 CGAATTTACTATTCACAAAGGATGCG 59.371 38.462 0.00 0.00 0.00 4.73
302 303 4.875544 TTACTATTCACAAAGGATGCGC 57.124 40.909 0.00 0.00 0.00 6.09
303 304 1.665679 ACTATTCACAAAGGATGCGCG 59.334 47.619 0.00 0.00 0.00 6.86
304 305 1.665679 CTATTCACAAAGGATGCGCGT 59.334 47.619 8.43 0.00 0.00 6.01
305 306 0.168788 ATTCACAAAGGATGCGCGTG 59.831 50.000 6.97 4.71 0.00 5.34
306 307 1.851021 TTCACAAAGGATGCGCGTGG 61.851 55.000 6.97 0.00 0.00 4.94
307 308 2.031919 ACAAAGGATGCGCGTGGA 59.968 55.556 6.97 0.00 0.00 4.02
308 309 1.599518 ACAAAGGATGCGCGTGGAA 60.600 52.632 6.97 0.00 0.00 3.53
309 310 1.154225 CAAAGGATGCGCGTGGAAC 60.154 57.895 6.97 0.00 0.00 3.62
310 311 2.332654 AAAGGATGCGCGTGGAACC 61.333 57.895 6.97 8.79 0.00 3.62
311 312 3.545124 AAGGATGCGCGTGGAACCA 62.545 57.895 18.52 0.00 30.22 3.67
312 313 2.819984 AAGGATGCGCGTGGAACCAT 62.820 55.000 18.52 4.02 30.22 3.55
313 314 2.404789 GATGCGCGTGGAACCATG 59.595 61.111 6.97 8.53 36.13 3.66
319 320 3.578456 CGTGGAACCATGCTCACC 58.422 61.111 0.00 0.00 0.00 4.02
320 321 1.302431 CGTGGAACCATGCTCACCA 60.302 57.895 0.00 0.00 0.00 4.17
321 322 0.888736 CGTGGAACCATGCTCACCAA 60.889 55.000 0.00 0.00 32.32 3.67
322 323 1.327303 GTGGAACCATGCTCACCAAA 58.673 50.000 0.00 0.00 32.32 3.28
323 324 1.895131 GTGGAACCATGCTCACCAAAT 59.105 47.619 0.00 0.00 32.32 2.32
324 325 2.094545 GTGGAACCATGCTCACCAAATC 60.095 50.000 0.00 0.00 32.32 2.17
325 326 1.478105 GGAACCATGCTCACCAAATCC 59.522 52.381 0.00 0.00 0.00 3.01
326 327 1.133025 GAACCATGCTCACCAAATCCG 59.867 52.381 0.00 0.00 0.00 4.18
327 328 0.038166 ACCATGCTCACCAAATCCGT 59.962 50.000 0.00 0.00 0.00 4.69
328 329 0.452987 CCATGCTCACCAAATCCGTG 59.547 55.000 0.00 0.00 0.00 4.94
329 330 1.167851 CATGCTCACCAAATCCGTGT 58.832 50.000 0.00 0.00 32.86 4.49
330 331 1.131126 CATGCTCACCAAATCCGTGTC 59.869 52.381 0.00 0.00 32.86 3.67
331 332 0.605319 TGCTCACCAAATCCGTGTCC 60.605 55.000 0.00 0.00 32.86 4.02
332 333 1.635663 GCTCACCAAATCCGTGTCCG 61.636 60.000 0.00 0.00 32.86 4.79
333 334 1.635663 CTCACCAAATCCGTGTCCGC 61.636 60.000 0.00 0.00 32.86 5.54
334 335 2.359478 ACCAAATCCGTGTCCGCC 60.359 61.111 0.00 0.00 0.00 6.13
335 336 2.046314 CCAAATCCGTGTCCGCCT 60.046 61.111 0.00 0.00 0.00 5.52
336 337 2.398554 CCAAATCCGTGTCCGCCTG 61.399 63.158 0.00 0.00 0.00 4.85
337 338 1.671054 CAAATCCGTGTCCGCCTGT 60.671 57.895 0.00 0.00 0.00 4.00
338 339 0.390603 CAAATCCGTGTCCGCCTGTA 60.391 55.000 0.00 0.00 0.00 2.74
339 340 0.108329 AAATCCGTGTCCGCCTGTAG 60.108 55.000 0.00 0.00 0.00 2.74
340 341 2.573609 AATCCGTGTCCGCCTGTAGC 62.574 60.000 0.00 0.00 38.52 3.58
341 342 3.760035 CCGTGTCCGCCTGTAGCT 61.760 66.667 0.00 0.00 40.39 3.32
342 343 2.507102 CGTGTCCGCCTGTAGCTG 60.507 66.667 0.00 0.00 40.39 4.24
343 344 2.125512 GTGTCCGCCTGTAGCTGG 60.126 66.667 0.00 0.00 40.39 4.85
344 345 3.390521 TGTCCGCCTGTAGCTGGG 61.391 66.667 0.00 0.00 40.39 4.45
345 346 3.391382 GTCCGCCTGTAGCTGGGT 61.391 66.667 0.00 0.00 40.39 4.51
346 347 2.606519 TCCGCCTGTAGCTGGGTT 60.607 61.111 0.00 0.00 40.39 4.11
347 348 1.305465 TCCGCCTGTAGCTGGGTTA 60.305 57.895 0.00 0.00 40.39 2.85
348 349 0.905809 TCCGCCTGTAGCTGGGTTAA 60.906 55.000 0.00 0.00 40.39 2.01
349 350 0.180406 CCGCCTGTAGCTGGGTTAAT 59.820 55.000 0.00 0.00 40.39 1.40
350 351 1.414919 CCGCCTGTAGCTGGGTTAATA 59.585 52.381 0.00 0.00 40.39 0.98
351 352 2.158871 CCGCCTGTAGCTGGGTTAATAA 60.159 50.000 0.00 0.00 40.39 1.40
352 353 2.870411 CGCCTGTAGCTGGGTTAATAAC 59.130 50.000 0.00 0.00 40.39 1.89
353 354 3.680475 CGCCTGTAGCTGGGTTAATAACA 60.680 47.826 5.45 0.00 40.39 2.41
354 355 3.877508 GCCTGTAGCTGGGTTAATAACAG 59.122 47.826 5.45 0.00 38.99 3.16
355 356 4.383770 GCCTGTAGCTGGGTTAATAACAGA 60.384 45.833 8.68 0.00 38.99 3.41
356 357 5.360591 CCTGTAGCTGGGTTAATAACAGAG 58.639 45.833 8.68 1.46 35.93 3.35
357 358 5.353394 TGTAGCTGGGTTAATAACAGAGG 57.647 43.478 5.45 0.00 34.21 3.69
358 359 5.027460 TGTAGCTGGGTTAATAACAGAGGA 58.973 41.667 5.45 0.00 34.21 3.71
359 360 5.665812 TGTAGCTGGGTTAATAACAGAGGAT 59.334 40.000 5.45 0.00 34.21 3.24
360 361 5.041191 AGCTGGGTTAATAACAGAGGATG 57.959 43.478 5.45 0.00 34.21 3.51
361 362 4.137543 GCTGGGTTAATAACAGAGGATGG 58.862 47.826 5.45 0.00 34.21 3.51
362 363 4.141482 GCTGGGTTAATAACAGAGGATGGA 60.141 45.833 5.45 0.00 34.21 3.41
363 364 5.615289 CTGGGTTAATAACAGAGGATGGAG 58.385 45.833 5.45 0.00 34.21 3.86
364 365 5.285401 TGGGTTAATAACAGAGGATGGAGA 58.715 41.667 5.45 0.00 0.00 3.71
365 366 5.130477 TGGGTTAATAACAGAGGATGGAGAC 59.870 44.000 5.45 0.00 0.00 3.36
366 367 5.290386 GGTTAATAACAGAGGATGGAGACG 58.710 45.833 5.45 0.00 0.00 4.18
367 368 5.290386 GTTAATAACAGAGGATGGAGACGG 58.710 45.833 0.00 0.00 0.00 4.79
368 369 2.820728 TAACAGAGGATGGAGACGGA 57.179 50.000 0.00 0.00 0.00 4.69
369 370 1.938585 AACAGAGGATGGAGACGGAA 58.061 50.000 0.00 0.00 0.00 4.30
370 371 1.187087 ACAGAGGATGGAGACGGAAC 58.813 55.000 0.00 0.00 0.00 3.62
371 372 1.186200 CAGAGGATGGAGACGGAACA 58.814 55.000 0.00 0.00 0.00 3.18
372 373 1.134965 CAGAGGATGGAGACGGAACAC 60.135 57.143 0.00 0.00 0.00 3.32
373 374 1.187087 GAGGATGGAGACGGAACACT 58.813 55.000 0.00 0.00 0.00 3.55
374 375 2.025226 AGAGGATGGAGACGGAACACTA 60.025 50.000 0.00 0.00 0.00 2.74
375 376 2.099427 GAGGATGGAGACGGAACACTAC 59.901 54.545 0.00 0.00 0.00 2.73
376 377 1.822990 GGATGGAGACGGAACACTACA 59.177 52.381 0.00 0.00 30.74 2.74
377 378 2.416972 GGATGGAGACGGAACACTACAC 60.417 54.545 0.00 0.00 29.11 2.90
378 379 1.991121 TGGAGACGGAACACTACACT 58.009 50.000 0.00 0.00 0.00 3.55
379 380 1.884579 TGGAGACGGAACACTACACTC 59.115 52.381 0.00 0.00 0.00 3.51
380 381 1.884579 GGAGACGGAACACTACACTCA 59.115 52.381 0.00 0.00 0.00 3.41
381 382 2.351544 GGAGACGGAACACTACACTCAC 60.352 54.545 0.00 0.00 0.00 3.51
382 383 2.553172 GAGACGGAACACTACACTCACT 59.447 50.000 0.00 0.00 0.00 3.41
383 384 2.553172 AGACGGAACACTACACTCACTC 59.447 50.000 0.00 0.00 0.00 3.51
384 385 2.292569 GACGGAACACTACACTCACTCA 59.707 50.000 0.00 0.00 0.00 3.41
385 386 2.034305 ACGGAACACTACACTCACTCAC 59.966 50.000 0.00 0.00 0.00 3.51
386 387 2.034179 CGGAACACTACACTCACTCACA 59.966 50.000 0.00 0.00 0.00 3.58
387 388 3.305403 CGGAACACTACACTCACTCACAT 60.305 47.826 0.00 0.00 0.00 3.21
388 389 4.238514 GGAACACTACACTCACTCACATC 58.761 47.826 0.00 0.00 0.00 3.06
389 390 4.262036 GGAACACTACACTCACTCACATCA 60.262 45.833 0.00 0.00 0.00 3.07
390 391 4.511617 ACACTACACTCACTCACATCAG 57.488 45.455 0.00 0.00 0.00 2.90
391 392 3.891977 ACACTACACTCACTCACATCAGT 59.108 43.478 0.00 0.00 0.00 3.41
395 396 2.288702 ACACTCACTCACATCAGTGCTC 60.289 50.000 0.00 0.00 45.49 4.26
427 428 3.244044 GCTCCTCTCTCTCTCTCTCTCTC 60.244 56.522 0.00 0.00 0.00 3.20
432 433 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
433 434 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
434 435 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
435 436 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
444 447 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
446 449 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
463 466 3.637229 CTCTCTCTCTCTCTCGGAGTAGT 59.363 52.174 4.69 0.00 42.40 2.73
512 515 7.541122 TGTGTAGTTTTGTTTTATTTTGGGC 57.459 32.000 0.00 0.00 0.00 5.36
547 550 2.159382 CGCCATTACCCTTCACTGTTT 58.841 47.619 0.00 0.00 0.00 2.83
548 551 3.340034 CGCCATTACCCTTCACTGTTTA 58.660 45.455 0.00 0.00 0.00 2.01
550 553 4.332828 GCCATTACCCTTCACTGTTTAGT 58.667 43.478 0.00 0.00 37.75 2.24
571 574 0.469892 CCCAAGTGGCCAAGTTCCTT 60.470 55.000 7.24 2.67 0.00 3.36
602 605 4.531659 ACGAAGAAAGCAAGTGTTGTAC 57.468 40.909 0.00 0.00 0.00 2.90
605 608 4.493545 CGAAGAAAGCAAGTGTTGTACGTT 60.494 41.667 0.00 0.00 0.00 3.99
611 618 4.690122 AGCAAGTGTTGTACGTTCTACTT 58.310 39.130 8.07 6.35 0.00 2.24
616 623 3.056834 GTGTTGTACGTTCTACTTACGCG 59.943 47.826 3.53 3.53 42.49 6.01
622 629 1.266466 GTTCTACTTACGCGACTGGC 58.734 55.000 15.93 0.00 38.69 4.85
655 666 9.755804 AGTTACTATGATGATGTTAGTGTCATG 57.244 33.333 0.00 0.00 35.33 3.07
660 671 1.299541 GATGTTAGTGTCATGGGCGG 58.700 55.000 0.00 0.00 0.00 6.13
677 692 2.286772 GGCGGGTAAATAAGTTGATGCG 60.287 50.000 0.00 0.00 0.00 4.73
680 695 4.551410 GCGGGTAAATAAGTTGATGCGTAC 60.551 45.833 0.00 0.00 0.00 3.67
707 722 4.090761 TCTGCTTTCTGAAACATGGAGT 57.909 40.909 0.00 0.00 0.00 3.85
708 723 4.067896 TCTGCTTTCTGAAACATGGAGTC 58.932 43.478 0.00 0.00 0.00 3.36
710 725 3.817084 TGCTTTCTGAAACATGGAGTCAG 59.183 43.478 13.52 13.52 40.15 3.51
711 726 3.365767 GCTTTCTGAAACATGGAGTCAGC 60.366 47.826 14.45 4.16 38.92 4.26
712 727 3.777106 TTCTGAAACATGGAGTCAGCT 57.223 42.857 14.45 0.00 38.92 4.24
714 729 4.462508 TCTGAAACATGGAGTCAGCTAG 57.537 45.455 14.45 0.00 38.92 3.42
715 730 3.834813 TCTGAAACATGGAGTCAGCTAGT 59.165 43.478 14.45 0.00 38.92 2.57
716 731 3.930336 TGAAACATGGAGTCAGCTAGTG 58.070 45.455 0.00 0.00 0.00 2.74
717 732 2.393271 AACATGGAGTCAGCTAGTGC 57.607 50.000 0.00 0.00 40.05 4.40
732 774 4.853268 GCTAGTGCTAATCTTGATTTGCC 58.147 43.478 20.58 14.30 36.03 4.52
735 777 3.375299 AGTGCTAATCTTGATTTGCCGAC 59.625 43.478 20.58 15.10 32.67 4.79
996 1102 1.442526 CCACCATCGCAGCAGGAATC 61.443 60.000 2.69 0.00 0.00 2.52
997 1103 0.745486 CACCATCGCAGCAGGAATCA 60.745 55.000 2.69 0.00 0.00 2.57
998 1104 0.182061 ACCATCGCAGCAGGAATCAT 59.818 50.000 2.69 0.00 0.00 2.45
1000 1106 2.158769 ACCATCGCAGCAGGAATCATTA 60.159 45.455 2.69 0.00 0.00 1.90
1002 1108 3.119955 CCATCGCAGCAGGAATCATTATG 60.120 47.826 0.00 0.00 0.00 1.90
1004 1110 2.104622 TCGCAGCAGGAATCATTATGGA 59.895 45.455 0.00 0.00 0.00 3.41
1263 1522 5.183904 GGCTGGTTCATCAGTCTTTTGTTAT 59.816 40.000 0.00 0.00 36.52 1.89
1321 1601 8.735303 AGAAACTTTCGATCTATACATCATCG 57.265 34.615 0.00 0.00 40.66 3.84
1405 1689 6.040209 AGTGATCTTGATAGATGCATCTCC 57.960 41.667 31.92 23.50 41.23 3.71
1514 2123 1.280421 GTGCAGGAGGAGGATGACTTT 59.720 52.381 0.00 0.00 0.00 2.66
1628 2237 0.181114 CCCATGGCTTCATCTCCGAA 59.819 55.000 6.09 0.00 0.00 4.30
1884 2499 9.597681 TCTTATATTTCTTTACCGAGGGAGTAT 57.402 33.333 0.00 0.00 0.00 2.12
1919 2693 2.380084 TCGAGTGGTTAACTGATGGC 57.620 50.000 5.42 0.00 40.07 4.40
2284 6298 3.117888 ACAGTTCACCATTGTCCAAGTCT 60.118 43.478 0.00 0.00 0.00 3.24
2418 6432 0.792640 CCGCTCAGCTACTTGTTGTG 59.207 55.000 0.00 0.00 0.00 3.33
2454 6472 1.145759 AATGGCGACTCATACGTGCG 61.146 55.000 0.00 0.00 0.00 5.34
2455 6473 2.000215 ATGGCGACTCATACGTGCGA 62.000 55.000 0.00 0.00 0.00 5.10
2456 6474 1.299165 GGCGACTCATACGTGCGAT 60.299 57.895 0.00 0.00 0.00 4.58
2512 6531 1.646189 TGTTTCAAAAACCAAGCGCC 58.354 45.000 2.29 0.00 0.00 6.53
2515 6534 0.671251 TTCAAAAACCAAGCGCCGAT 59.329 45.000 2.29 0.00 0.00 4.18
2522 6541 1.583054 ACCAAGCGCCGATATTTCTC 58.417 50.000 2.29 0.00 0.00 2.87
2548 6567 6.019640 GGTGAAACACATCAAAGACACAAATG 60.020 38.462 0.00 0.00 39.98 2.32
2573 6592 9.462174 TGAAATCATGTTTTATGTTTGACACTC 57.538 29.630 1.75 0.00 0.00 3.51
2592 6611 3.242739 ACTCGCAAATTAATCACGATGGC 60.243 43.478 7.58 0.00 31.59 4.40
2610 6629 0.591659 GCGTTCTTGAAACCACCCTC 59.408 55.000 0.00 0.00 0.00 4.30
2618 6637 2.136863 TGAAACCACCCTCCCAACTTA 58.863 47.619 0.00 0.00 0.00 2.24
2625 6644 3.437344 CCACCCTCCCAACTTAAGGAAAA 60.437 47.826 7.53 0.00 31.44 2.29
2666 6685 2.042762 CATCCTCCTCCCCCACCA 59.957 66.667 0.00 0.00 0.00 4.17
2681 6700 0.462047 CACCAACACCTAGATCCGGC 60.462 60.000 0.00 0.00 0.00 6.13
2685 6704 0.389391 AACACCTAGATCCGGCATCG 59.611 55.000 0.00 0.00 36.50 3.84
2686 6705 0.755698 ACACCTAGATCCGGCATCGT 60.756 55.000 0.00 0.00 36.50 3.73
2698 6717 3.138625 CATCGTAGGTCGGCCCAT 58.861 61.111 0.08 0.00 40.32 4.00
2711 10857 2.202919 CCCATGACGCGCAGATGA 60.203 61.111 5.73 0.00 0.00 2.92
2777 10923 1.522569 CCCTCCTGAAGTTAGGCGG 59.477 63.158 0.00 0.00 41.46 6.13
2793 10939 2.280079 GGCTGCCCCTATTTGCCT 59.720 61.111 7.66 0.00 40.36 4.75
2817 10963 1.412343 TGATTCTGCTAGTATGCGGCA 59.588 47.619 4.58 4.58 39.06 5.69
2835 10981 0.314935 CATCCGGCATAATGTTGGCC 59.685 55.000 0.00 0.00 44.27 5.36
2857 11003 1.270550 GAACCTGTCATTGCCAAGTGG 59.729 52.381 0.00 0.00 38.53 4.00
2962 11108 7.615582 TGCTTGATTTCCTAATACTGAACAG 57.384 36.000 0.00 0.00 0.00 3.16
2963 11109 7.394016 TGCTTGATTTCCTAATACTGAACAGA 58.606 34.615 8.87 0.00 0.00 3.41
2995 11141 9.965824 AATCACATTTCAACCTTAAACTAACTG 57.034 29.630 0.00 0.00 0.00 3.16
2998 11144 7.867403 CACATTTCAACCTTAAACTAACTGCAT 59.133 33.333 0.00 0.00 0.00 3.96
3018 11164 8.637986 ACTGCATGGTTTAATTTAAAACTCTCA 58.362 29.630 15.89 10.23 38.98 3.27
3051 11197 5.598830 ACCAGTAGATATACACCTTCACCTG 59.401 44.000 0.00 0.00 0.00 4.00
3094 11240 2.637872 TCCTACTCAGTTTGGACCAAGG 59.362 50.000 7.07 2.57 0.00 3.61
3096 11242 0.550914 ACTCAGTTTGGACCAAGGCA 59.449 50.000 7.07 0.00 0.00 4.75
3102 11248 0.684805 TTTGGACCAAGGCAAACGGT 60.685 50.000 7.07 0.00 35.12 4.83
3122 15199 2.865551 GTTTTGACCACAACCAATGCTG 59.134 45.455 0.00 0.00 35.63 4.41
3175 15252 1.272872 ACTAAGACTACGGCTTGGGGA 60.273 52.381 0.00 0.00 0.00 4.81
3176 15253 1.136500 CTAAGACTACGGCTTGGGGAC 59.864 57.143 0.00 0.00 0.00 4.46
3177 15254 0.544595 AAGACTACGGCTTGGGGACT 60.545 55.000 0.00 0.00 0.00 3.85
3178 15255 0.333993 AGACTACGGCTTGGGGACTA 59.666 55.000 0.00 0.00 0.00 2.59
3179 15256 0.745468 GACTACGGCTTGGGGACTAG 59.255 60.000 0.00 0.00 36.19 2.57
3207 15287 2.027745 TGGATTGTCCTTGCTCTCTGTC 60.028 50.000 0.00 0.00 37.46 3.51
3209 15289 3.520569 GATTGTCCTTGCTCTCTGTCTC 58.479 50.000 0.00 0.00 0.00 3.36
3219 15299 0.251832 TCTCTGTCTCACCCTGACCC 60.252 60.000 0.00 0.00 33.83 4.46
3238 15318 0.914644 CTGATGCCTTTCTCCTCCCA 59.085 55.000 0.00 0.00 0.00 4.37
3242 15322 1.079057 GCCTTTCTCCTCCCACGAC 60.079 63.158 0.00 0.00 0.00 4.34
3243 15323 1.545706 GCCTTTCTCCTCCCACGACT 61.546 60.000 0.00 0.00 0.00 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.535170 TGATACCCCAAAATTGTAGAATTGTTA 57.465 29.630 0.00 0.00 31.83 2.41
2 3 8.429237 TTGATACCCCAAAATTGTAGAATTGT 57.571 30.769 0.00 0.00 31.83 2.71
4 5 9.100197 AGTTTGATACCCCAAAATTGTAGAATT 57.900 29.630 0.00 0.00 37.72 2.17
6 7 8.485578 AAGTTTGATACCCCAAAATTGTAGAA 57.514 30.769 0.00 0.00 41.06 2.10
12 13 6.100424 TCAACCAAGTTTGATACCCCAAAATT 59.900 34.615 0.00 0.00 42.63 1.82
13 14 5.604650 TCAACCAAGTTTGATACCCCAAAAT 59.395 36.000 0.00 0.00 37.72 1.82
14 15 4.962995 TCAACCAAGTTTGATACCCCAAAA 59.037 37.500 0.00 0.00 37.72 2.44
15 16 4.342665 GTCAACCAAGTTTGATACCCCAAA 59.657 41.667 0.00 0.00 37.80 3.28
16 17 3.892588 GTCAACCAAGTTTGATACCCCAA 59.107 43.478 0.00 0.00 37.80 4.12
17 18 3.492337 GTCAACCAAGTTTGATACCCCA 58.508 45.455 0.00 0.00 37.80 4.96
18 19 2.823747 GGTCAACCAAGTTTGATACCCC 59.176 50.000 0.00 0.00 37.80 4.95
19 20 3.492337 TGGTCAACCAAGTTTGATACCC 58.508 45.455 0.00 0.00 44.35 3.69
32 33 4.559153 CCATGTGAAAAGAATGGTCAACC 58.441 43.478 0.00 0.00 36.82 3.77
33 34 4.280677 TCCCATGTGAAAAGAATGGTCAAC 59.719 41.667 0.00 0.00 39.43 3.18
34 35 4.478203 TCCCATGTGAAAAGAATGGTCAA 58.522 39.130 0.00 0.00 39.43 3.18
35 36 4.111255 TCCCATGTGAAAAGAATGGTCA 57.889 40.909 0.00 0.00 39.43 4.02
36 37 4.524328 ACTTCCCATGTGAAAAGAATGGTC 59.476 41.667 0.00 0.00 39.43 4.02
37 38 4.482990 ACTTCCCATGTGAAAAGAATGGT 58.517 39.130 0.00 0.00 39.43 3.55
38 39 5.473066 AACTTCCCATGTGAAAAGAATGG 57.527 39.130 0.00 0.00 40.53 3.16
39 40 6.514947 TCAAACTTCCCATGTGAAAAGAATG 58.485 36.000 0.00 0.00 0.00 2.67
40 41 6.729690 TCAAACTTCCCATGTGAAAAGAAT 57.270 33.333 0.00 0.00 0.00 2.40
41 42 6.098124 ACATCAAACTTCCCATGTGAAAAGAA 59.902 34.615 0.00 0.00 0.00 2.52
42 43 5.598005 ACATCAAACTTCCCATGTGAAAAGA 59.402 36.000 0.00 0.00 0.00 2.52
43 44 5.846203 ACATCAAACTTCCCATGTGAAAAG 58.154 37.500 0.00 0.00 0.00 2.27
44 45 5.867903 ACATCAAACTTCCCATGTGAAAA 57.132 34.783 0.00 0.00 0.00 2.29
45 46 6.303054 TCTACATCAAACTTCCCATGTGAAA 58.697 36.000 0.00 0.00 31.83 2.69
46 47 5.875224 TCTACATCAAACTTCCCATGTGAA 58.125 37.500 0.00 0.00 31.83 3.18
47 48 5.497464 TCTACATCAAACTTCCCATGTGA 57.503 39.130 0.00 0.00 31.83 3.58
48 49 6.573664 TTTCTACATCAAACTTCCCATGTG 57.426 37.500 0.00 0.00 31.83 3.21
49 50 8.739972 GTTATTTCTACATCAAACTTCCCATGT 58.260 33.333 0.00 0.00 33.95 3.21
50 51 8.739039 TGTTATTTCTACATCAAACTTCCCATG 58.261 33.333 0.00 0.00 0.00 3.66
51 52 8.877864 TGTTATTTCTACATCAAACTTCCCAT 57.122 30.769 0.00 0.00 0.00 4.00
52 53 8.877864 ATGTTATTTCTACATCAAACTTCCCA 57.122 30.769 0.00 0.00 30.65 4.37
63 64 8.429641 AGAATACCACGGATGTTATTTCTACAT 58.570 33.333 0.00 0.00 38.86 2.29
64 65 7.788026 AGAATACCACGGATGTTATTTCTACA 58.212 34.615 0.00 0.00 0.00 2.74
65 66 8.658499 AAGAATACCACGGATGTTATTTCTAC 57.342 34.615 0.00 0.00 0.00 2.59
66 67 9.976511 CTAAGAATACCACGGATGTTATTTCTA 57.023 33.333 0.00 0.00 0.00 2.10
67 68 8.483758 ACTAAGAATACCACGGATGTTATTTCT 58.516 33.333 0.00 0.00 0.00 2.52
68 69 8.548721 CACTAAGAATACCACGGATGTTATTTC 58.451 37.037 0.00 0.00 0.00 2.17
69 70 8.262227 TCACTAAGAATACCACGGATGTTATTT 58.738 33.333 0.00 0.00 0.00 1.40
70 71 7.788026 TCACTAAGAATACCACGGATGTTATT 58.212 34.615 0.00 0.00 0.00 1.40
71 72 7.356089 TCACTAAGAATACCACGGATGTTAT 57.644 36.000 0.00 0.00 0.00 1.89
72 73 6.778834 TCACTAAGAATACCACGGATGTTA 57.221 37.500 0.00 0.00 0.00 2.41
73 74 5.670792 TCACTAAGAATACCACGGATGTT 57.329 39.130 0.00 0.00 0.00 2.71
74 75 5.421056 TCTTCACTAAGAATACCACGGATGT 59.579 40.000 0.00 0.00 38.81 3.06
75 76 5.902681 TCTTCACTAAGAATACCACGGATG 58.097 41.667 0.00 0.00 38.81 3.51
76 77 6.540438 TTCTTCACTAAGAATACCACGGAT 57.460 37.500 0.00 0.00 44.85 4.18
77 78 5.988310 TTCTTCACTAAGAATACCACGGA 57.012 39.130 0.00 0.00 44.85 4.69
87 88 6.821665 CCCCGATTGTATTTTCTTCACTAAGA 59.178 38.462 0.00 0.00 40.03 2.10
88 89 6.821665 TCCCCGATTGTATTTTCTTCACTAAG 59.178 38.462 0.00 0.00 0.00 2.18
89 90 6.596497 GTCCCCGATTGTATTTTCTTCACTAA 59.404 38.462 0.00 0.00 0.00 2.24
90 91 6.070424 AGTCCCCGATTGTATTTTCTTCACTA 60.070 38.462 0.00 0.00 0.00 2.74
91 92 4.941873 GTCCCCGATTGTATTTTCTTCACT 59.058 41.667 0.00 0.00 0.00 3.41
92 93 4.941873 AGTCCCCGATTGTATTTTCTTCAC 59.058 41.667 0.00 0.00 0.00 3.18
93 94 5.174037 AGTCCCCGATTGTATTTTCTTCA 57.826 39.130 0.00 0.00 0.00 3.02
94 95 6.822170 AGTAAGTCCCCGATTGTATTTTCTTC 59.178 38.462 0.00 0.00 0.00 2.87
95 96 6.718294 AGTAAGTCCCCGATTGTATTTTCTT 58.282 36.000 0.00 0.00 0.00 2.52
96 97 6.309389 AGTAAGTCCCCGATTGTATTTTCT 57.691 37.500 0.00 0.00 0.00 2.52
97 98 8.672823 AATAGTAAGTCCCCGATTGTATTTTC 57.327 34.615 0.00 0.00 0.00 2.29
98 99 8.269317 TGAATAGTAAGTCCCCGATTGTATTTT 58.731 33.333 0.00 0.00 0.00 1.82
99 100 7.798071 TGAATAGTAAGTCCCCGATTGTATTT 58.202 34.615 0.00 0.00 0.00 1.40
100 101 7.369551 TGAATAGTAAGTCCCCGATTGTATT 57.630 36.000 0.00 0.00 0.00 1.89
101 102 6.989155 TGAATAGTAAGTCCCCGATTGTAT 57.011 37.500 0.00 0.00 0.00 2.29
102 103 6.989155 ATGAATAGTAAGTCCCCGATTGTA 57.011 37.500 0.00 0.00 0.00 2.41
103 104 5.888982 ATGAATAGTAAGTCCCCGATTGT 57.111 39.130 0.00 0.00 0.00 2.71
104 105 8.557029 GTTTAATGAATAGTAAGTCCCCGATTG 58.443 37.037 0.00 0.00 0.00 2.67
105 106 8.269317 TGTTTAATGAATAGTAAGTCCCCGATT 58.731 33.333 0.00 0.00 0.00 3.34
106 107 7.798071 TGTTTAATGAATAGTAAGTCCCCGAT 58.202 34.615 0.00 0.00 0.00 4.18
107 108 7.185318 TGTTTAATGAATAGTAAGTCCCCGA 57.815 36.000 0.00 0.00 0.00 5.14
108 109 7.852971 TTGTTTAATGAATAGTAAGTCCCCG 57.147 36.000 0.00 0.00 0.00 5.73
109 110 9.185680 ACATTGTTTAATGAATAGTAAGTCCCC 57.814 33.333 6.98 0.00 45.21 4.81
141 142 9.023967 GCAAAAATGACAAAATCGAAGCTATAT 57.976 29.630 0.00 0.00 0.00 0.86
142 143 7.487829 GGCAAAAATGACAAAATCGAAGCTATA 59.512 33.333 0.00 0.00 0.00 1.31
143 144 6.311200 GGCAAAAATGACAAAATCGAAGCTAT 59.689 34.615 0.00 0.00 0.00 2.97
144 145 5.633182 GGCAAAAATGACAAAATCGAAGCTA 59.367 36.000 0.00 0.00 0.00 3.32
145 146 4.448732 GGCAAAAATGACAAAATCGAAGCT 59.551 37.500 0.00 0.00 0.00 3.74
146 147 4.448732 AGGCAAAAATGACAAAATCGAAGC 59.551 37.500 0.00 0.00 0.00 3.86
147 148 7.083858 TCTAGGCAAAAATGACAAAATCGAAG 58.916 34.615 0.00 0.00 0.00 3.79
148 149 6.976088 TCTAGGCAAAAATGACAAAATCGAA 58.024 32.000 0.00 0.00 0.00 3.71
149 150 6.567687 TCTAGGCAAAAATGACAAAATCGA 57.432 33.333 0.00 0.00 0.00 3.59
150 151 7.816945 ATTCTAGGCAAAAATGACAAAATCG 57.183 32.000 0.00 0.00 0.00 3.34
151 152 9.087424 GGTATTCTAGGCAAAAATGACAAAATC 57.913 33.333 0.00 0.00 0.00 2.17
152 153 8.592809 TGGTATTCTAGGCAAAAATGACAAAAT 58.407 29.630 0.00 0.00 0.00 1.82
153 154 7.870445 GTGGTATTCTAGGCAAAAATGACAAAA 59.130 33.333 0.00 0.00 0.00 2.44
154 155 7.375053 GTGGTATTCTAGGCAAAAATGACAAA 58.625 34.615 0.00 0.00 0.00 2.83
155 156 6.348950 CGTGGTATTCTAGGCAAAAATGACAA 60.349 38.462 0.00 0.00 0.00 3.18
156 157 5.123186 CGTGGTATTCTAGGCAAAAATGACA 59.877 40.000 0.00 0.00 0.00 3.58
157 158 5.353123 TCGTGGTATTCTAGGCAAAAATGAC 59.647 40.000 0.00 0.00 0.00 3.06
158 159 5.492895 TCGTGGTATTCTAGGCAAAAATGA 58.507 37.500 0.00 0.00 0.00 2.57
159 160 5.811399 TCGTGGTATTCTAGGCAAAAATG 57.189 39.130 0.00 0.00 0.00 2.32
160 161 6.377146 ACATTCGTGGTATTCTAGGCAAAAAT 59.623 34.615 0.00 0.00 0.00 1.82
161 162 5.708230 ACATTCGTGGTATTCTAGGCAAAAA 59.292 36.000 0.00 0.00 0.00 1.94
162 163 5.250200 ACATTCGTGGTATTCTAGGCAAAA 58.750 37.500 0.00 0.00 0.00 2.44
163 164 4.839121 ACATTCGTGGTATTCTAGGCAAA 58.161 39.130 0.00 0.00 0.00 3.68
164 165 4.081365 TGACATTCGTGGTATTCTAGGCAA 60.081 41.667 0.00 0.00 0.00 4.52
165 166 3.449377 TGACATTCGTGGTATTCTAGGCA 59.551 43.478 0.00 0.00 0.00 4.75
166 167 4.054780 TGACATTCGTGGTATTCTAGGC 57.945 45.455 0.00 0.00 0.00 3.93
167 168 6.986817 AGAAATGACATTCGTGGTATTCTAGG 59.013 38.462 0.05 0.00 34.46 3.02
168 169 8.425577 AAGAAATGACATTCGTGGTATTCTAG 57.574 34.615 0.05 0.00 34.46 2.43
169 170 8.664798 CAAAGAAATGACATTCGTGGTATTCTA 58.335 33.333 0.05 0.00 34.46 2.10
170 171 7.174946 ACAAAGAAATGACATTCGTGGTATTCT 59.825 33.333 0.05 0.00 34.46 2.40
171 172 7.271223 CACAAAGAAATGACATTCGTGGTATTC 59.729 37.037 0.05 0.00 34.46 1.75
172 173 7.040755 TCACAAAGAAATGACATTCGTGGTATT 60.041 33.333 0.05 0.00 34.46 1.89
173 174 6.429692 TCACAAAGAAATGACATTCGTGGTAT 59.570 34.615 0.05 0.00 34.46 2.73
174 175 5.760743 TCACAAAGAAATGACATTCGTGGTA 59.239 36.000 0.05 0.00 34.46 3.25
175 176 4.578516 TCACAAAGAAATGACATTCGTGGT 59.421 37.500 0.05 0.00 34.46 4.16
176 177 5.107109 TCACAAAGAAATGACATTCGTGG 57.893 39.130 0.05 0.00 34.46 4.94
189 190 5.150683 CCGCGTATGAAATTTCACAAAGAA 58.849 37.500 22.71 0.00 40.49 2.52
190 191 4.378978 CCCGCGTATGAAATTTCACAAAGA 60.379 41.667 22.71 4.05 40.49 2.52
191 192 3.851403 CCCGCGTATGAAATTTCACAAAG 59.149 43.478 22.71 16.08 40.49 2.77
192 193 3.253677 ACCCGCGTATGAAATTTCACAAA 59.746 39.130 22.71 9.06 40.49 2.83
193 194 2.814919 ACCCGCGTATGAAATTTCACAA 59.185 40.909 22.71 11.52 40.49 3.33
194 195 2.428491 ACCCGCGTATGAAATTTCACA 58.572 42.857 22.71 9.28 40.49 3.58
195 196 4.806342 ATACCCGCGTATGAAATTTCAC 57.194 40.909 22.71 10.50 40.49 3.18
196 197 4.751098 GGTATACCCGCGTATGAAATTTCA 59.249 41.667 22.52 22.52 42.14 2.69
197 198 4.751098 TGGTATACCCGCGTATGAAATTTC 59.249 41.667 19.42 11.41 35.88 2.17
198 199 4.706035 TGGTATACCCGCGTATGAAATTT 58.294 39.130 19.42 0.00 35.88 1.82
199 200 4.039488 TCTGGTATACCCGCGTATGAAATT 59.961 41.667 19.42 0.00 35.88 1.82
200 201 3.575256 TCTGGTATACCCGCGTATGAAAT 59.425 43.478 19.42 0.00 35.88 2.17
201 202 2.957680 TCTGGTATACCCGCGTATGAAA 59.042 45.455 19.42 0.00 35.88 2.69
202 203 2.294233 GTCTGGTATACCCGCGTATGAA 59.706 50.000 19.42 0.00 35.88 2.57
203 204 1.881973 GTCTGGTATACCCGCGTATGA 59.118 52.381 19.42 3.70 35.88 2.15
204 205 1.400629 CGTCTGGTATACCCGCGTATG 60.401 57.143 19.42 0.00 35.88 2.39
205 206 0.877071 CGTCTGGTATACCCGCGTAT 59.123 55.000 19.42 0.00 38.72 3.06
206 207 0.179059 TCGTCTGGTATACCCGCGTA 60.179 55.000 19.42 8.18 35.15 4.42
207 208 1.451927 TCGTCTGGTATACCCGCGT 60.452 57.895 19.42 0.00 35.15 6.01
208 209 1.009222 GTCGTCTGGTATACCCGCG 60.009 63.158 19.42 18.61 35.15 6.46
209 210 1.597742 TAGTCGTCTGGTATACCCGC 58.402 55.000 19.42 11.15 35.15 6.13
210 211 3.144506 ACATAGTCGTCTGGTATACCCG 58.855 50.000 19.42 15.05 35.15 5.28
211 212 5.709164 ACATACATAGTCGTCTGGTATACCC 59.291 44.000 19.42 3.04 34.29 3.69
212 213 6.814506 ACATACATAGTCGTCTGGTATACC 57.185 41.667 15.50 15.50 30.25 2.73
213 214 8.777413 TGTAACATACATAGTCGTCTGGTATAC 58.223 37.037 0.00 0.00 32.89 1.47
214 215 8.907222 TGTAACATACATAGTCGTCTGGTATA 57.093 34.615 7.91 0.00 32.89 1.47
215 216 7.812690 TGTAACATACATAGTCGTCTGGTAT 57.187 36.000 0.00 0.00 32.89 2.73
216 217 7.628769 TTGTAACATACATAGTCGTCTGGTA 57.371 36.000 0.00 0.00 38.68 3.25
217 218 6.519679 TTGTAACATACATAGTCGTCTGGT 57.480 37.500 0.00 0.00 38.68 4.00
218 219 8.420374 AAATTGTAACATACATAGTCGTCTGG 57.580 34.615 0.00 0.00 38.68 3.86
270 271 9.672086 CCTTTGTGAATAGTAAATTCGAAACAA 57.328 29.630 0.00 1.05 0.00 2.83
271 272 9.058174 TCCTTTGTGAATAGTAAATTCGAAACA 57.942 29.630 0.00 0.00 0.00 2.83
274 275 8.181573 GCATCCTTTGTGAATAGTAAATTCGAA 58.818 33.333 0.00 0.00 0.00 3.71
275 276 7.465379 CGCATCCTTTGTGAATAGTAAATTCGA 60.465 37.037 0.00 0.00 38.12 3.71
276 277 6.628856 CGCATCCTTTGTGAATAGTAAATTCG 59.371 38.462 0.00 0.00 38.12 3.34
277 278 6.414987 GCGCATCCTTTGTGAATAGTAAATTC 59.585 38.462 0.30 0.00 38.12 2.17
278 279 6.265577 GCGCATCCTTTGTGAATAGTAAATT 58.734 36.000 0.30 0.00 38.12 1.82
279 280 5.504010 CGCGCATCCTTTGTGAATAGTAAAT 60.504 40.000 8.75 0.00 38.12 1.40
280 281 4.201773 CGCGCATCCTTTGTGAATAGTAAA 60.202 41.667 8.75 0.00 38.12 2.01
281 282 3.308595 CGCGCATCCTTTGTGAATAGTAA 59.691 43.478 8.75 0.00 38.12 2.24
282 283 2.863740 CGCGCATCCTTTGTGAATAGTA 59.136 45.455 8.75 0.00 38.12 1.82
283 284 1.665679 CGCGCATCCTTTGTGAATAGT 59.334 47.619 8.75 0.00 38.12 2.12
284 285 1.665679 ACGCGCATCCTTTGTGAATAG 59.334 47.619 5.73 0.00 38.12 1.73
285 286 1.396648 CACGCGCATCCTTTGTGAATA 59.603 47.619 5.73 0.00 38.12 1.75
286 287 0.168788 CACGCGCATCCTTTGTGAAT 59.831 50.000 5.73 0.00 38.12 2.57
287 288 1.573932 CACGCGCATCCTTTGTGAA 59.426 52.632 5.73 0.00 38.12 3.18
288 289 2.324330 CCACGCGCATCCTTTGTGA 61.324 57.895 5.73 0.00 38.12 3.58
289 290 1.851021 TTCCACGCGCATCCTTTGTG 61.851 55.000 5.73 5.19 38.93 3.33
290 291 1.599518 TTCCACGCGCATCCTTTGT 60.600 52.632 5.73 0.00 0.00 2.83
291 292 1.154225 GTTCCACGCGCATCCTTTG 60.154 57.895 5.73 0.00 0.00 2.77
292 293 2.332654 GGTTCCACGCGCATCCTTT 61.333 57.895 5.73 0.00 0.00 3.11
293 294 2.746277 GGTTCCACGCGCATCCTT 60.746 61.111 5.73 0.00 0.00 3.36
294 295 3.329542 ATGGTTCCACGCGCATCCT 62.330 57.895 5.73 0.00 0.00 3.24
295 296 2.824041 ATGGTTCCACGCGCATCC 60.824 61.111 5.73 2.47 0.00 3.51
296 297 2.404789 CATGGTTCCACGCGCATC 59.595 61.111 5.73 0.00 0.00 3.91
297 298 3.814268 GCATGGTTCCACGCGCAT 61.814 61.111 5.73 0.00 0.00 4.73
299 300 4.166011 GAGCATGGTTCCACGCGC 62.166 66.667 5.73 0.00 29.93 6.86
300 301 2.741985 TGAGCATGGTTCCACGCG 60.742 61.111 3.53 3.53 29.93 6.01
301 302 2.690778 GGTGAGCATGGTTCCACGC 61.691 63.158 0.00 1.42 0.00 5.34
302 303 0.888736 TTGGTGAGCATGGTTCCACG 60.889 55.000 17.98 0.00 0.00 4.94
303 304 1.327303 TTTGGTGAGCATGGTTCCAC 58.673 50.000 17.98 13.31 0.00 4.02
304 305 2.170166 GATTTGGTGAGCATGGTTCCA 58.830 47.619 15.46 15.46 0.00 3.53
305 306 1.478105 GGATTTGGTGAGCATGGTTCC 59.522 52.381 0.00 6.01 0.00 3.62
306 307 1.133025 CGGATTTGGTGAGCATGGTTC 59.867 52.381 0.00 0.00 0.00 3.62
307 308 1.176527 CGGATTTGGTGAGCATGGTT 58.823 50.000 0.00 0.00 0.00 3.67
308 309 0.038166 ACGGATTTGGTGAGCATGGT 59.962 50.000 0.00 0.00 0.00 3.55
309 310 0.452987 CACGGATTTGGTGAGCATGG 59.547 55.000 0.00 0.00 37.60 3.66
310 311 1.131126 GACACGGATTTGGTGAGCATG 59.869 52.381 0.00 0.00 38.73 4.06
311 312 1.453155 GACACGGATTTGGTGAGCAT 58.547 50.000 0.00 0.00 38.73 3.79
312 313 0.605319 GGACACGGATTTGGTGAGCA 60.605 55.000 0.00 0.00 38.73 4.26
313 314 1.635663 CGGACACGGATTTGGTGAGC 61.636 60.000 0.00 0.00 38.73 4.26
314 315 1.635663 GCGGACACGGATTTGGTGAG 61.636 60.000 0.00 0.00 41.36 3.51
315 316 1.669760 GCGGACACGGATTTGGTGA 60.670 57.895 0.00 0.00 41.36 4.02
316 317 2.686816 GGCGGACACGGATTTGGTG 61.687 63.158 0.00 0.00 41.36 4.17
317 318 2.359478 GGCGGACACGGATTTGGT 60.359 61.111 0.00 0.00 41.36 3.67
318 319 2.046314 AGGCGGACACGGATTTGG 60.046 61.111 0.00 0.00 41.36 3.28
319 320 0.390603 TACAGGCGGACACGGATTTG 60.391 55.000 0.00 0.00 41.36 2.32
320 321 0.108329 CTACAGGCGGACACGGATTT 60.108 55.000 0.00 0.00 41.36 2.17
321 322 1.515954 CTACAGGCGGACACGGATT 59.484 57.895 0.00 0.00 41.36 3.01
322 323 3.077519 GCTACAGGCGGACACGGAT 62.078 63.158 0.00 0.00 41.36 4.18
323 324 3.755628 GCTACAGGCGGACACGGA 61.756 66.667 0.00 0.00 41.36 4.69
332 333 3.877508 CTGTTATTAACCCAGCTACAGGC 59.122 47.826 4.17 0.00 42.19 4.85
333 334 5.353394 TCTGTTATTAACCCAGCTACAGG 57.647 43.478 7.45 1.92 33.99 4.00
334 335 5.128827 TCCTCTGTTATTAACCCAGCTACAG 59.871 44.000 4.17 1.81 34.38 2.74
335 336 5.027460 TCCTCTGTTATTAACCCAGCTACA 58.973 41.667 4.17 0.00 0.00 2.74
336 337 5.609533 TCCTCTGTTATTAACCCAGCTAC 57.390 43.478 4.17 0.00 0.00 3.58
337 338 5.071788 CCATCCTCTGTTATTAACCCAGCTA 59.928 44.000 4.17 0.00 0.00 3.32
338 339 4.141390 CCATCCTCTGTTATTAACCCAGCT 60.141 45.833 4.17 0.00 0.00 4.24
339 340 4.137543 CCATCCTCTGTTATTAACCCAGC 58.862 47.826 4.17 0.00 0.00 4.85
340 341 5.366768 TCTCCATCCTCTGTTATTAACCCAG 59.633 44.000 4.17 0.54 0.00 4.45
341 342 5.130477 GTCTCCATCCTCTGTTATTAACCCA 59.870 44.000 4.17 0.00 0.00 4.51
342 343 5.612351 GTCTCCATCCTCTGTTATTAACCC 58.388 45.833 4.17 0.00 0.00 4.11
343 344 5.290386 CGTCTCCATCCTCTGTTATTAACC 58.710 45.833 4.17 0.00 0.00 2.85
344 345 5.068723 TCCGTCTCCATCCTCTGTTATTAAC 59.931 44.000 0.00 0.00 0.00 2.01
345 346 5.205821 TCCGTCTCCATCCTCTGTTATTAA 58.794 41.667 0.00 0.00 0.00 1.40
346 347 4.800023 TCCGTCTCCATCCTCTGTTATTA 58.200 43.478 0.00 0.00 0.00 0.98
347 348 3.643237 TCCGTCTCCATCCTCTGTTATT 58.357 45.455 0.00 0.00 0.00 1.40
348 349 3.314307 TCCGTCTCCATCCTCTGTTAT 57.686 47.619 0.00 0.00 0.00 1.89
349 350 2.758979 GTTCCGTCTCCATCCTCTGTTA 59.241 50.000 0.00 0.00 0.00 2.41
350 351 1.550976 GTTCCGTCTCCATCCTCTGTT 59.449 52.381 0.00 0.00 0.00 3.16
351 352 1.187087 GTTCCGTCTCCATCCTCTGT 58.813 55.000 0.00 0.00 0.00 3.41
352 353 1.134965 GTGTTCCGTCTCCATCCTCTG 60.135 57.143 0.00 0.00 0.00 3.35
353 354 1.187087 GTGTTCCGTCTCCATCCTCT 58.813 55.000 0.00 0.00 0.00 3.69
354 355 1.187087 AGTGTTCCGTCTCCATCCTC 58.813 55.000 0.00 0.00 0.00 3.71
355 356 2.100989 GTAGTGTTCCGTCTCCATCCT 58.899 52.381 0.00 0.00 0.00 3.24
356 357 1.822990 TGTAGTGTTCCGTCTCCATCC 59.177 52.381 0.00 0.00 0.00 3.51
357 358 2.492484 AGTGTAGTGTTCCGTCTCCATC 59.508 50.000 0.00 0.00 0.00 3.51
358 359 2.492484 GAGTGTAGTGTTCCGTCTCCAT 59.508 50.000 0.00 0.00 0.00 3.41
359 360 1.884579 GAGTGTAGTGTTCCGTCTCCA 59.115 52.381 0.00 0.00 0.00 3.86
360 361 1.884579 TGAGTGTAGTGTTCCGTCTCC 59.115 52.381 0.00 0.00 0.00 3.71
361 362 2.553172 AGTGAGTGTAGTGTTCCGTCTC 59.447 50.000 0.00 0.00 0.00 3.36
362 363 2.553172 GAGTGAGTGTAGTGTTCCGTCT 59.447 50.000 0.00 0.00 0.00 4.18
363 364 2.292569 TGAGTGAGTGTAGTGTTCCGTC 59.707 50.000 0.00 0.00 0.00 4.79
364 365 2.034305 GTGAGTGAGTGTAGTGTTCCGT 59.966 50.000 0.00 0.00 0.00 4.69
365 366 2.034179 TGTGAGTGAGTGTAGTGTTCCG 59.966 50.000 0.00 0.00 0.00 4.30
366 367 3.728076 TGTGAGTGAGTGTAGTGTTCC 57.272 47.619 0.00 0.00 0.00 3.62
367 368 4.871513 TGATGTGAGTGAGTGTAGTGTTC 58.128 43.478 0.00 0.00 0.00 3.18
368 369 4.342378 ACTGATGTGAGTGAGTGTAGTGTT 59.658 41.667 0.00 0.00 0.00 3.32
369 370 3.891977 ACTGATGTGAGTGAGTGTAGTGT 59.108 43.478 0.00 0.00 0.00 3.55
370 371 4.233005 CACTGATGTGAGTGAGTGTAGTG 58.767 47.826 0.00 0.00 45.39 2.74
371 372 3.305676 GCACTGATGTGAGTGAGTGTAGT 60.306 47.826 3.75 0.00 45.39 2.73
372 373 3.056962 AGCACTGATGTGAGTGAGTGTAG 60.057 47.826 3.75 0.00 45.39 2.74
373 374 2.893489 AGCACTGATGTGAGTGAGTGTA 59.107 45.455 3.75 0.00 45.39 2.90
374 375 1.690893 AGCACTGATGTGAGTGAGTGT 59.309 47.619 3.75 0.00 45.39 3.55
375 376 2.288640 TGAGCACTGATGTGAGTGAGTG 60.289 50.000 3.75 0.00 45.39 3.51
376 377 1.966354 TGAGCACTGATGTGAGTGAGT 59.034 47.619 3.75 0.00 45.39 3.41
377 378 2.288640 TGTGAGCACTGATGTGAGTGAG 60.289 50.000 3.75 0.00 45.39 3.51
378 379 1.688197 TGTGAGCACTGATGTGAGTGA 59.312 47.619 3.75 0.00 45.39 3.41
379 380 2.067013 CTGTGAGCACTGATGTGAGTG 58.933 52.381 1.99 0.00 46.55 3.51
380 381 1.607509 GCTGTGAGCACTGATGTGAGT 60.608 52.381 11.06 0.00 46.55 3.41
381 382 1.077123 GCTGTGAGCACTGATGTGAG 58.923 55.000 11.06 0.00 46.55 3.51
382 383 3.222053 GCTGTGAGCACTGATGTGA 57.778 52.632 11.06 0.00 46.55 3.58
401 402 3.051581 AGAGAGAGAGAGAGGAGCAGAT 58.948 50.000 0.00 0.00 0.00 2.90
404 405 2.435805 GAGAGAGAGAGAGAGAGGAGCA 59.564 54.545 0.00 0.00 0.00 4.26
408 409 4.222336 AGAGAGAGAGAGAGAGAGAGAGG 58.778 52.174 0.00 0.00 0.00 3.69
409 410 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
410 411 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
411 412 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
412 413 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
413 414 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
416 417 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
427 428 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
432 433 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
433 434 4.023279 CGAGAGAGAGAGAGAGAGAGAGAG 60.023 54.167 0.00 0.00 0.00 3.20
434 435 3.885901 CGAGAGAGAGAGAGAGAGAGAGA 59.114 52.174 0.00 0.00 0.00 3.10
435 436 3.005261 CCGAGAGAGAGAGAGAGAGAGAG 59.995 56.522 0.00 0.00 0.00 3.20
444 447 4.539726 ACTACTACTCCGAGAGAGAGAGA 58.460 47.826 1.33 0.41 46.50 3.10
446 449 6.550481 TCATTACTACTACTCCGAGAGAGAGA 59.450 42.308 1.33 0.00 46.50 3.10
463 466 6.681729 AACTGTCCACTCCTTTCATTACTA 57.318 37.500 0.00 0.00 0.00 1.82
547 550 1.145571 ACTTGGCCACTTGGGAACTA 58.854 50.000 3.88 0.00 40.01 2.24
548 551 0.261696 AACTTGGCCACTTGGGAACT 59.738 50.000 3.88 0.00 40.01 3.01
550 553 0.469144 GGAACTTGGCCACTTGGGAA 60.469 55.000 3.88 0.00 40.01 3.97
591 594 5.386729 GCGTAAGTAGAACGTACAACACTTG 60.387 44.000 9.75 0.00 42.26 3.16
592 595 4.676924 GCGTAAGTAGAACGTACAACACTT 59.323 41.667 0.00 0.00 42.26 3.16
598 601 2.736721 AGTCGCGTAAGTAGAACGTACA 59.263 45.455 5.77 0.00 42.26 2.90
602 605 1.531912 CCAGTCGCGTAAGTAGAACG 58.468 55.000 5.77 0.00 43.12 3.95
616 623 4.335874 TCATAGTAACTTCTCTCGCCAGTC 59.664 45.833 0.00 0.00 0.00 3.51
622 629 9.605955 CTAACATCATCATAGTAACTTCTCTCG 57.394 37.037 0.00 0.00 0.00 4.04
629 636 9.755804 CATGACACTAACATCATCATAGTAACT 57.244 33.333 0.00 0.00 33.18 2.24
654 665 3.283751 CATCAACTTATTTACCCGCCCA 58.716 45.455 0.00 0.00 0.00 5.36
655 666 2.034179 GCATCAACTTATTTACCCGCCC 59.966 50.000 0.00 0.00 0.00 6.13
660 671 4.511734 GCGTACGCATCAACTTATTTACC 58.488 43.478 33.90 0.00 41.49 2.85
710 725 4.553547 CGGCAAATCAAGATTAGCACTAGC 60.554 45.833 0.00 0.00 42.56 3.42
711 726 4.811024 TCGGCAAATCAAGATTAGCACTAG 59.189 41.667 0.00 0.00 0.00 2.57
712 727 4.570772 GTCGGCAAATCAAGATTAGCACTA 59.429 41.667 0.00 0.00 0.00 2.74
714 729 3.487544 GGTCGGCAAATCAAGATTAGCAC 60.488 47.826 0.00 0.00 0.00 4.40
715 730 2.682856 GGTCGGCAAATCAAGATTAGCA 59.317 45.455 0.00 0.00 0.00 3.49
716 731 2.286418 CGGTCGGCAAATCAAGATTAGC 60.286 50.000 0.00 0.00 0.00 3.09
717 732 2.287915 CCGGTCGGCAAATCAAGATTAG 59.712 50.000 0.00 0.00 0.00 1.73
718 733 2.285083 CCGGTCGGCAAATCAAGATTA 58.715 47.619 0.00 0.00 0.00 1.75
735 777 3.835790 TTCAAAGGACACCGGCCGG 62.836 63.158 42.17 42.17 42.03 6.13
741 783 1.072331 TCTCCAGCTTCAAAGGACACC 59.928 52.381 0.00 0.00 0.00 4.16
879 975 2.393646 GGGTGTAAGAGGCAGAGAGAT 58.606 52.381 0.00 0.00 0.00 2.75
996 1102 2.164219 GCCATGGCCGTAATCCATAATG 59.836 50.000 27.24 0.00 42.11 1.90
997 1103 2.446435 GCCATGGCCGTAATCCATAAT 58.554 47.619 27.24 0.00 42.11 1.28
998 1104 1.880221 CGCCATGGCCGTAATCCATAA 60.880 52.381 30.79 0.00 42.11 1.90
1000 1106 1.600636 CGCCATGGCCGTAATCCAT 60.601 57.895 30.79 0.00 44.70 3.41
1002 1108 2.978010 CCGCCATGGCCGTAATCC 60.978 66.667 30.79 1.03 37.98 3.01
1304 1584 5.123979 CCTTGACCGATGATGTATAGATCGA 59.876 44.000 5.48 0.00 41.18 3.59
1343 1627 6.012858 ACCTGGATGTAATCTTTACTTGTGGA 60.013 38.462 0.00 0.00 44.71 4.02
1345 1629 7.390440 TGAACCTGGATGTAATCTTTACTTGTG 59.610 37.037 0.00 0.00 44.71 3.33
1384 1668 5.046520 CAGGGAGATGCATCTATCAAGATCA 60.047 44.000 28.78 0.00 40.65 2.92
1405 1689 6.877855 CAGGTTATATGAGGATGATTGACAGG 59.122 42.308 0.00 0.00 0.00 4.00
1532 2141 4.192453 TTTTGGTCCCGGGCACGT 62.192 61.111 18.49 0.00 38.78 4.49
1853 2468 7.732996 CCTCGGTAAAGAAATATAAGAGGGAA 58.267 38.462 0.09 0.00 39.10 3.97
1874 2489 5.561145 CGATCAACTGTTAGATACTCCCTCG 60.561 48.000 0.00 0.00 0.00 4.63
1884 2499 4.201920 CCACTCGATCGATCAACTGTTAGA 60.202 45.833 24.40 10.14 0.00 2.10
1919 2693 6.195165 GCAGCCTATAACGATTCAGAAAAAG 58.805 40.000 0.00 0.00 0.00 2.27
2026 6037 1.826921 CTGCATGATGTCCAGCCCC 60.827 63.158 0.00 0.00 0.00 5.80
2284 6298 6.683974 TCGCTATCGATTGATCATCAGATA 57.316 37.500 11.17 5.44 40.21 1.98
2358 6372 1.205893 GCAAGGATCGTCACCTCTCTT 59.794 52.381 0.00 0.00 36.67 2.85
2440 6456 1.545759 AACATCGCACGTATGAGTCG 58.454 50.000 3.85 0.00 0.00 4.18
2522 6541 3.064682 TGTGTCTTTGATGTGTTTCACCG 59.935 43.478 0.00 0.00 32.73 4.94
2548 6567 8.629986 CGAGTGTCAAACATAAAACATGATTTC 58.370 33.333 3.99 0.00 0.00 2.17
2571 6590 3.291585 GCCATCGTGATTAATTTGCGAG 58.708 45.455 12.80 5.00 35.03 5.03
2573 6592 2.036217 CGCCATCGTGATTAATTTGCG 58.964 47.619 0.00 0.00 0.00 4.85
2592 6611 1.235724 GGAGGGTGGTTTCAAGAACG 58.764 55.000 0.00 0.00 0.00 3.95
2599 6618 2.963599 TAAGTTGGGAGGGTGGTTTC 57.036 50.000 0.00 0.00 0.00 2.78
2610 6629 4.794169 CGTGTGATTTTCCTTAAGTTGGG 58.206 43.478 0.97 0.00 0.00 4.12
2666 6685 0.389391 CGATGCCGGATCTAGGTGTT 59.611 55.000 5.05 0.00 0.00 3.32
2681 6700 1.300931 CATGGGCCGACCTACGATG 60.301 63.158 0.00 0.00 45.77 3.84
2685 6704 2.106332 CGTCATGGGCCGACCTAC 59.894 66.667 0.00 0.00 41.11 3.18
2686 6705 3.845259 GCGTCATGGGCCGACCTA 61.845 66.667 0.00 0.00 41.11 3.08
2698 6717 0.098905 GTCTACTCATCTGCGCGTCA 59.901 55.000 8.43 5.42 0.00 4.35
2704 6723 1.066303 CCGGACAGTCTACTCATCTGC 59.934 57.143 0.00 0.00 33.12 4.26
2707 6726 4.391155 AGATACCGGACAGTCTACTCATC 58.609 47.826 9.46 0.00 0.00 2.92
2711 10857 4.453751 GAGAAGATACCGGACAGTCTACT 58.546 47.826 9.46 0.00 0.00 2.57
2777 10923 0.468771 ATCAGGCAAATAGGGGCAGC 60.469 55.000 0.00 0.00 0.00 5.25
2785 10931 6.359804 ACTAGCAGAATCAATCAGGCAAATA 58.640 36.000 0.00 0.00 34.22 1.40
2793 10939 4.309933 CCGCATACTAGCAGAATCAATCA 58.690 43.478 0.00 0.00 0.00 2.57
2817 10963 2.732289 GGCCAACATTATGCCGGAT 58.268 52.632 5.05 0.00 35.08 4.18
2835 10981 2.030540 CACTTGGCAATGACAGGTTCTG 60.031 50.000 0.00 0.00 37.52 3.02
2857 11003 0.464554 GGCCAGGATAAGTGGTGCTC 60.465 60.000 0.00 0.00 37.40 4.26
2926 11072 9.639563 TTAGGAAATCAAGCATCCATAAATACA 57.360 29.630 0.00 0.00 35.62 2.29
2995 11141 9.476202 AGTTGAGAGTTTTAAATTAAACCATGC 57.524 29.630 0.00 0.00 38.49 4.06
2998 11144 9.191479 TGGAGTTGAGAGTTTTAAATTAAACCA 57.809 29.630 0.00 0.00 38.49 3.67
3018 11164 7.182206 AGGTGTATATCTACTGGTTTTGGAGTT 59.818 37.037 0.00 0.00 0.00 3.01
3073 11219 2.637872 CCTTGGTCCAAACTGAGTAGGA 59.362 50.000 5.64 2.91 0.00 2.94
3081 11227 0.744281 CGTTTGCCTTGGTCCAAACT 59.256 50.000 5.64 0.00 45.19 2.66
3085 11231 0.684805 AAACCGTTTGCCTTGGTCCA 60.685 50.000 0.00 0.00 34.11 4.02
3102 11248 2.762887 TCAGCATTGGTTGTGGTCAAAA 59.237 40.909 0.00 0.00 35.20 2.44
3145 15222 3.255149 CCGTAGTCTTAGTCAACAGTGGT 59.745 47.826 0.00 0.00 0.00 4.16
3191 15270 1.615883 GTGAGACAGAGAGCAAGGACA 59.384 52.381 0.00 0.00 0.00 4.02
3207 15287 1.222936 GCATCAGGGTCAGGGTGAG 59.777 63.158 0.00 0.00 0.00 3.51
3209 15289 1.856539 AAGGCATCAGGGTCAGGGTG 61.857 60.000 0.00 0.00 0.00 4.61
3219 15299 0.914644 TGGGAGGAGAAAGGCATCAG 59.085 55.000 0.00 0.00 0.00 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.