Multiple sequence alignment - TraesCS4A01G332100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G332100 chr4A 100.000 3600 0 0 1 3600 616509992 616506393 0.000000e+00 6649.0
1 TraesCS4A01G332100 chr4A 89.876 484 35 8 1287 1756 646066962 646067445 8.550000e-171 610.0
2 TraesCS4A01G332100 chr4A 92.857 378 17 5 1348 1715 647938405 647938028 1.140000e-149 540.0
3 TraesCS4A01G332100 chr4A 90.141 355 26 5 736 1086 651456466 651456815 1.520000e-123 453.0
4 TraesCS4A01G332100 chr5D 91.740 1586 76 21 634 2199 551824442 551825992 0.000000e+00 2152.0
5 TraesCS4A01G332100 chr5D 92.204 1334 58 21 2303 3600 551826165 551827488 0.000000e+00 1845.0
6 TraesCS4A01G332100 chr5D 93.636 110 7 0 2200 2309 551826032 551826141 8.000000e-37 165.0
7 TraesCS4A01G332100 chr5B 87.686 1616 80 41 641 2199 700190523 700192076 0.000000e+00 1772.0
8 TraesCS4A01G332100 chr5B 92.912 917 38 12 2303 3201 700192248 700193155 0.000000e+00 1308.0
9 TraesCS4A01G332100 chr5B 87.513 937 88 14 839 1756 472496042 472496968 0.000000e+00 1055.0
10 TraesCS4A01G332100 chr5B 83.047 466 31 20 3167 3600 700193156 700193605 2.620000e-101 379.0
11 TraesCS4A01G332100 chr5B 86.809 235 25 3 1953 2187 429846120 429845892 1.280000e-64 257.0
12 TraesCS4A01G332100 chr5B 88.182 110 13 0 2200 2309 700192117 700192226 8.110000e-27 132.0
13 TraesCS4A01G332100 chr1B 85.701 1091 70 33 839 1912 38532017 38530996 0.000000e+00 1072.0
14 TraesCS4A01G332100 chr1B 88.916 830 61 17 839 1649 478116033 478115216 0.000000e+00 994.0
15 TraesCS4A01G332100 chr7A 88.352 807 64 14 839 1626 255033773 255032978 0.000000e+00 942.0
16 TraesCS4A01G332100 chr7A 89.944 358 27 5 736 1089 578922893 578922541 1.520000e-123 453.0
17 TraesCS4A01G332100 chr7A 89.944 358 27 5 736 1089 578926593 578926241 1.520000e-123 453.0
18 TraesCS4A01G332100 chr7A 89.944 358 27 5 736 1089 578930293 578929941 1.520000e-123 453.0
19 TraesCS4A01G332100 chr7D 93.795 419 16 3 1348 1756 497197186 497196768 3.950000e-174 621.0
20 TraesCS4A01G332100 chr2B 89.669 484 36 8 1287 1756 57741411 57741894 3.980000e-169 604.0
21 TraesCS4A01G332100 chr3A 93.122 378 15 4 1348 1715 145004722 145004346 8.790000e-151 544.0
22 TraesCS4A01G332100 chr5A 92.487 386 18 4 1381 1756 669522673 669522289 3.160000e-150 542.0
23 TraesCS4A01G332100 chr2A 92.487 386 18 4 1381 1756 251392540 251392924 3.160000e-150 542.0
24 TraesCS4A01G332100 chr3B 89.637 386 26 7 736 1117 454344212 454344587 2.510000e-131 479.0
25 TraesCS4A01G332100 chr4B 87.552 241 21 6 1949 2187 618861508 618861741 1.650000e-68 270.0
26 TraesCS4A01G332100 chr4B 91.379 58 3 1 1867 1924 618861452 618861507 1.070000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G332100 chr4A 616506393 616509992 3599 True 6649.000000 6649 100.000000 1 3600 1 chr4A.!!$R1 3599
1 TraesCS4A01G332100 chr5D 551824442 551827488 3046 False 1387.333333 2152 92.526667 634 3600 3 chr5D.!!$F1 2966
2 TraesCS4A01G332100 chr5B 472496042 472496968 926 False 1055.000000 1055 87.513000 839 1756 1 chr5B.!!$F1 917
3 TraesCS4A01G332100 chr5B 700190523 700193605 3082 False 897.750000 1772 87.956750 641 3600 4 chr5B.!!$F2 2959
4 TraesCS4A01G332100 chr1B 38530996 38532017 1021 True 1072.000000 1072 85.701000 839 1912 1 chr1B.!!$R1 1073
5 TraesCS4A01G332100 chr1B 478115216 478116033 817 True 994.000000 994 88.916000 839 1649 1 chr1B.!!$R2 810
6 TraesCS4A01G332100 chr7A 255032978 255033773 795 True 942.000000 942 88.352000 839 1626 1 chr7A.!!$R1 787
7 TraesCS4A01G332100 chr7A 578922541 578930293 7752 True 453.000000 453 89.944000 736 1089 3 chr7A.!!$R2 353

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
304 305 0.036732 GTCCACTCCAATCTGCCACA 59.963 55.0 0.00 0.0 0.00 4.17 F
431 432 0.039437 ACGTTCAGGTACAGACGCAG 60.039 55.0 0.00 0.0 0.00 5.18 F
611 612 0.106217 AAGGATAATGGGCCCAACCG 60.106 55.0 32.58 0.0 40.62 4.44 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2254 7521 0.875059 AAAACTAGCAGCCGACTTGC 59.125 50.0 0.00 0.00 41.83 4.01 R
2428 7725 0.178992 TGTCAGGGCCTGGAACAAAG 60.179 55.0 32.23 5.22 38.70 2.77 R
2603 7900 1.622607 TTGGTGGGGCGGAGTCTATG 61.623 60.0 0.00 0.00 0.00 2.23 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.975988 AGAGGAGGCTATCATTGGTAAAA 57.024 39.130 0.00 0.00 0.00 1.52
23 24 5.934781 AGAGGAGGCTATCATTGGTAAAAG 58.065 41.667 0.00 0.00 0.00 2.27
25 26 5.934781 AGGAGGCTATCATTGGTAAAAGAG 58.065 41.667 0.00 0.00 0.00 2.85
26 27 5.667626 AGGAGGCTATCATTGGTAAAAGAGA 59.332 40.000 0.00 0.00 0.00 3.10
27 28 6.158695 AGGAGGCTATCATTGGTAAAAGAGAA 59.841 38.462 0.00 0.00 0.00 2.87
28 29 6.484977 GGAGGCTATCATTGGTAAAAGAGAAG 59.515 42.308 0.00 0.00 0.00 2.85
29 30 6.360618 AGGCTATCATTGGTAAAAGAGAAGG 58.639 40.000 0.00 0.00 0.00 3.46
30 31 6.069381 AGGCTATCATTGGTAAAAGAGAAGGT 60.069 38.462 0.00 0.00 0.00 3.50
32 33 7.442666 GGCTATCATTGGTAAAAGAGAAGGTAG 59.557 40.741 0.00 0.00 0.00 3.18
33 34 7.988028 GCTATCATTGGTAAAAGAGAAGGTAGT 59.012 37.037 0.00 0.00 0.00 2.73
34 35 9.892130 CTATCATTGGTAAAAGAGAAGGTAGTT 57.108 33.333 0.00 0.00 0.00 2.24
35 36 7.979444 TCATTGGTAAAAGAGAAGGTAGTTG 57.021 36.000 0.00 0.00 0.00 3.16
36 37 7.741785 TCATTGGTAAAAGAGAAGGTAGTTGA 58.258 34.615 0.00 0.00 0.00 3.18
37 38 8.383175 TCATTGGTAAAAGAGAAGGTAGTTGAT 58.617 33.333 0.00 0.00 0.00 2.57
38 39 9.667107 CATTGGTAAAAGAGAAGGTAGTTGATA 57.333 33.333 0.00 0.00 0.00 2.15
41 42 9.096823 TGGTAAAAGAGAAGGTAGTTGATAGAA 57.903 33.333 0.00 0.00 0.00 2.10
42 43 9.589111 GGTAAAAGAGAAGGTAGTTGATAGAAG 57.411 37.037 0.00 0.00 0.00 2.85
43 44 9.589111 GTAAAAGAGAAGGTAGTTGATAGAAGG 57.411 37.037 0.00 0.00 0.00 3.46
44 45 8.437274 AAAAGAGAAGGTAGTTGATAGAAGGA 57.563 34.615 0.00 0.00 0.00 3.36
45 46 7.654022 AAGAGAAGGTAGTTGATAGAAGGAG 57.346 40.000 0.00 0.00 0.00 3.69
46 47 6.737608 AGAGAAGGTAGTTGATAGAAGGAGT 58.262 40.000 0.00 0.00 0.00 3.85
47 48 7.186268 AGAGAAGGTAGTTGATAGAAGGAGTT 58.814 38.462 0.00 0.00 0.00 3.01
48 49 7.123547 AGAGAAGGTAGTTGATAGAAGGAGTTG 59.876 40.741 0.00 0.00 0.00 3.16
49 50 5.346181 AGGTAGTTGATAGAAGGAGTTGC 57.654 43.478 0.00 0.00 0.00 4.17
51 52 3.963428 AGTTGATAGAAGGAGTTGCGT 57.037 42.857 0.00 0.00 0.00 5.24
52 53 4.273148 AGTTGATAGAAGGAGTTGCGTT 57.727 40.909 0.00 0.00 0.00 4.84
53 54 5.401531 AGTTGATAGAAGGAGTTGCGTTA 57.598 39.130 0.00 0.00 0.00 3.18
54 55 5.411781 AGTTGATAGAAGGAGTTGCGTTAG 58.588 41.667 0.00 0.00 0.00 2.34
55 56 3.782046 TGATAGAAGGAGTTGCGTTAGC 58.218 45.455 0.00 0.00 45.41 3.09
57 58 0.685097 AGAAGGAGTTGCGTTAGCCA 59.315 50.000 0.00 0.00 44.33 4.75
58 59 0.796927 GAAGGAGTTGCGTTAGCCAC 59.203 55.000 0.00 0.00 44.33 5.01
62 63 3.698250 AGTTGCGTTAGCCACTGAA 57.302 47.368 0.00 0.00 46.06 3.02
64 65 1.602377 AGTTGCGTTAGCCACTGAAAC 59.398 47.619 0.00 0.00 46.06 2.78
65 66 1.332375 GTTGCGTTAGCCACTGAAACA 59.668 47.619 0.00 0.00 44.33 2.83
67 68 0.237498 GCGTTAGCCACTGAAACACC 59.763 55.000 0.00 0.00 37.42 4.16
68 69 1.588674 CGTTAGCCACTGAAACACCA 58.411 50.000 0.00 0.00 0.00 4.17
69 70 1.263217 CGTTAGCCACTGAAACACCAC 59.737 52.381 0.00 0.00 0.00 4.16
70 71 1.263217 GTTAGCCACTGAAACACCACG 59.737 52.381 0.00 0.00 0.00 4.94
71 72 0.753867 TAGCCACTGAAACACCACGA 59.246 50.000 0.00 0.00 0.00 4.35
72 73 0.107410 AGCCACTGAAACACCACGAA 60.107 50.000 0.00 0.00 0.00 3.85
74 75 1.663695 CCACTGAAACACCACGAACT 58.336 50.000 0.00 0.00 0.00 3.01
77 78 1.208535 ACTGAAACACCACGAACTCCA 59.791 47.619 0.00 0.00 0.00 3.86
78 79 2.158813 ACTGAAACACCACGAACTCCAT 60.159 45.455 0.00 0.00 0.00 3.41
79 80 2.878406 CTGAAACACCACGAACTCCATT 59.122 45.455 0.00 0.00 0.00 3.16
80 81 4.062293 CTGAAACACCACGAACTCCATTA 58.938 43.478 0.00 0.00 0.00 1.90
83 84 1.975680 ACACCACGAACTCCATTACCT 59.024 47.619 0.00 0.00 0.00 3.08
85 86 2.742053 CACCACGAACTCCATTACCTTG 59.258 50.000 0.00 0.00 0.00 3.61
86 87 2.290071 ACCACGAACTCCATTACCTTGG 60.290 50.000 0.00 0.00 38.18 3.61
87 88 2.356135 CACGAACTCCATTACCTTGGG 58.644 52.381 0.00 0.00 37.37 4.12
89 90 1.065418 CGAACTCCATTACCTTGGGCT 60.065 52.381 0.00 0.00 37.37 5.19
90 91 2.618045 CGAACTCCATTACCTTGGGCTT 60.618 50.000 0.00 0.00 37.37 4.35
92 93 3.542969 ACTCCATTACCTTGGGCTTTT 57.457 42.857 0.00 0.00 37.37 2.27
93 94 4.668138 ACTCCATTACCTTGGGCTTTTA 57.332 40.909 0.00 0.00 37.37 1.52
94 95 4.600062 ACTCCATTACCTTGGGCTTTTAG 58.400 43.478 0.00 0.00 37.37 1.85
95 96 4.291249 ACTCCATTACCTTGGGCTTTTAGA 59.709 41.667 0.00 0.00 37.37 2.10
96 97 5.222254 ACTCCATTACCTTGGGCTTTTAGAA 60.222 40.000 0.00 0.00 37.37 2.10
97 98 5.261216 TCCATTACCTTGGGCTTTTAGAAG 58.739 41.667 0.00 0.00 37.37 2.85
98 99 4.402474 CCATTACCTTGGGCTTTTAGAAGG 59.598 45.833 0.00 0.00 40.80 3.46
106 107 2.643933 GCTTTTAGAAGGCAAGGCAG 57.356 50.000 0.00 0.00 33.34 4.85
107 108 1.203287 GCTTTTAGAAGGCAAGGCAGG 59.797 52.381 0.00 0.00 33.34 4.85
123 124 1.457346 CAGGCCCTTAACTGCAAGAG 58.543 55.000 0.00 0.00 37.43 2.85
124 125 1.003580 CAGGCCCTTAACTGCAAGAGA 59.996 52.381 0.00 0.00 37.43 3.10
125 126 1.280421 AGGCCCTTAACTGCAAGAGAG 59.720 52.381 0.00 0.00 37.43 3.20
126 127 1.279271 GGCCCTTAACTGCAAGAGAGA 59.721 52.381 0.00 0.00 37.43 3.10
127 128 2.626840 GCCCTTAACTGCAAGAGAGAG 58.373 52.381 0.00 0.00 37.43 3.20
128 129 2.234908 GCCCTTAACTGCAAGAGAGAGA 59.765 50.000 0.00 0.00 37.43 3.10
129 130 3.307059 GCCCTTAACTGCAAGAGAGAGAA 60.307 47.826 0.00 0.00 37.43 2.87
130 131 4.804261 GCCCTTAACTGCAAGAGAGAGAAA 60.804 45.833 0.00 0.00 37.43 2.52
132 133 5.942826 CCCTTAACTGCAAGAGAGAGAAAAT 59.057 40.000 0.00 0.00 37.43 1.82
133 134 7.106239 CCCTTAACTGCAAGAGAGAGAAAATA 58.894 38.462 0.00 0.00 37.43 1.40
134 135 7.772757 CCCTTAACTGCAAGAGAGAGAAAATAT 59.227 37.037 0.00 0.00 37.43 1.28
135 136 8.610896 CCTTAACTGCAAGAGAGAGAAAATATG 58.389 37.037 0.00 0.00 37.43 1.78
136 137 6.998968 AACTGCAAGAGAGAGAAAATATGG 57.001 37.500 0.00 0.00 37.43 2.74
137 138 6.305272 ACTGCAAGAGAGAGAAAATATGGA 57.695 37.500 0.00 0.00 37.43 3.41
138 139 6.347696 ACTGCAAGAGAGAGAAAATATGGAG 58.652 40.000 0.00 0.00 37.43 3.86
139 140 6.155910 ACTGCAAGAGAGAGAAAATATGGAGA 59.844 38.462 0.00 0.00 37.43 3.71
140 141 6.950842 TGCAAGAGAGAGAAAATATGGAGAA 58.049 36.000 0.00 0.00 0.00 2.87
141 142 7.397221 TGCAAGAGAGAGAAAATATGGAGAAA 58.603 34.615 0.00 0.00 0.00 2.52
144 145 9.610705 CAAGAGAGAGAAAATATGGAGAAATCA 57.389 33.333 0.00 0.00 0.00 2.57
146 147 9.781633 AGAGAGAGAAAATATGGAGAAATCATG 57.218 33.333 0.00 0.00 0.00 3.07
147 148 9.558396 GAGAGAGAAAATATGGAGAAATCATGT 57.442 33.333 0.00 0.00 0.00 3.21
148 149 9.558396 AGAGAGAAAATATGGAGAAATCATGTC 57.442 33.333 0.00 0.00 0.00 3.06
149 150 8.688747 AGAGAAAATATGGAGAAATCATGTCC 57.311 34.615 0.00 0.00 41.91 4.02
150 151 7.723172 AGAGAAAATATGGAGAAATCATGTCCC 59.277 37.037 0.00 0.00 40.83 4.46
151 152 6.779539 AGAAAATATGGAGAAATCATGTCCCC 59.220 38.462 0.00 0.00 40.83 4.81
152 153 5.937492 AATATGGAGAAATCATGTCCCCT 57.063 39.130 0.00 0.00 40.83 4.79
153 154 3.589951 ATGGAGAAATCATGTCCCCTG 57.410 47.619 0.00 0.00 40.83 4.45
154 155 1.064463 TGGAGAAATCATGTCCCCTGC 60.064 52.381 0.00 0.00 40.83 4.85
155 156 1.064463 GGAGAAATCATGTCCCCTGCA 60.064 52.381 0.00 0.00 35.41 4.41
156 157 2.295885 GAGAAATCATGTCCCCTGCAG 58.704 52.381 6.78 6.78 0.00 4.41
158 159 0.040058 AAATCATGTCCCCTGCAGCA 59.960 50.000 8.66 0.38 0.00 4.41
159 160 0.395311 AATCATGTCCCCTGCAGCAG 60.395 55.000 16.23 16.23 0.00 4.24
167 168 2.505006 CCTGCAGCAGGCCTAGAG 59.495 66.667 28.85 3.18 45.13 2.43
168 169 2.062777 CCTGCAGCAGGCCTAGAGA 61.063 63.158 28.85 0.00 45.13 3.10
169 170 1.409251 CCTGCAGCAGGCCTAGAGAT 61.409 60.000 28.85 0.00 45.13 2.75
170 171 0.249953 CTGCAGCAGGCCTAGAGATG 60.250 60.000 15.35 3.10 43.89 2.90
171 172 1.071128 GCAGCAGGCCTAGAGATGG 59.929 63.158 3.98 0.00 36.11 3.51
181 182 3.886123 GCCTAGAGATGGCCTAAAAACA 58.114 45.455 3.32 0.00 44.32 2.83
182 183 4.464947 GCCTAGAGATGGCCTAAAAACAT 58.535 43.478 3.32 0.00 44.32 2.71
183 184 4.517075 GCCTAGAGATGGCCTAAAAACATC 59.483 45.833 3.32 0.00 44.32 3.06
185 186 4.591321 AGAGATGGCCTAAAAACATCCA 57.409 40.909 3.32 0.00 41.38 3.41
188 189 5.185828 AGAGATGGCCTAAAAACATCCAAAC 59.814 40.000 3.32 0.00 41.38 2.93
189 190 5.086621 AGATGGCCTAAAAACATCCAAACT 58.913 37.500 3.32 0.00 41.38 2.66
190 191 6.252995 AGATGGCCTAAAAACATCCAAACTA 58.747 36.000 3.32 0.00 41.38 2.24
192 193 4.525100 TGGCCTAAAAACATCCAAACTACC 59.475 41.667 3.32 0.00 0.00 3.18
194 195 5.466819 GCCTAAAAACATCCAAACTACCAC 58.533 41.667 0.00 0.00 0.00 4.16
196 197 5.536916 CCTAAAAACATCCAAACTACCACCA 59.463 40.000 0.00 0.00 0.00 4.17
197 198 6.210584 CCTAAAAACATCCAAACTACCACCAT 59.789 38.462 0.00 0.00 0.00 3.55
198 199 6.493189 AAAAACATCCAAACTACCACCATT 57.507 33.333 0.00 0.00 0.00 3.16
199 200 7.604657 AAAAACATCCAAACTACCACCATTA 57.395 32.000 0.00 0.00 0.00 1.90
201 202 7.604657 AAACATCCAAACTACCACCATTAAA 57.395 32.000 0.00 0.00 0.00 1.52
202 203 7.790782 AACATCCAAACTACCACCATTAAAT 57.209 32.000 0.00 0.00 0.00 1.40
203 204 8.887264 AACATCCAAACTACCACCATTAAATA 57.113 30.769 0.00 0.00 0.00 1.40
205 206 8.113462 ACATCCAAACTACCACCATTAAATAGT 58.887 33.333 0.00 0.00 0.00 2.12
206 207 9.621629 CATCCAAACTACCACCATTAAATAGTA 57.378 33.333 0.00 0.00 0.00 1.82
207 208 9.623000 ATCCAAACTACCACCATTAAATAGTAC 57.377 33.333 0.00 0.00 0.00 2.73
209 210 7.830201 CCAAACTACCACCATTAAATAGTACCA 59.170 37.037 0.00 0.00 0.00 3.25
210 211 9.233649 CAAACTACCACCATTAAATAGTACCAA 57.766 33.333 0.00 0.00 0.00 3.67
211 212 9.810870 AAACTACCACCATTAAATAGTACCAAA 57.189 29.630 0.00 0.00 0.00 3.28
212 213 9.810870 AACTACCACCATTAAATAGTACCAAAA 57.189 29.630 0.00 0.00 0.00 2.44
213 214 9.810870 ACTACCACCATTAAATAGTACCAAAAA 57.189 29.630 0.00 0.00 0.00 1.94
230 231 2.128367 AAAAACCCGATGAAACGCAC 57.872 45.000 0.00 0.00 0.00 5.34
232 233 0.536460 AAACCCGATGAAACGCACCT 60.536 50.000 0.00 0.00 0.00 4.00
233 234 0.536460 AACCCGATGAAACGCACCTT 60.536 50.000 0.00 0.00 0.00 3.50
234 235 0.322322 ACCCGATGAAACGCACCTTA 59.678 50.000 0.00 0.00 0.00 2.69
235 236 1.065709 ACCCGATGAAACGCACCTTAT 60.066 47.619 0.00 0.00 0.00 1.73
236 237 2.168936 ACCCGATGAAACGCACCTTATA 59.831 45.455 0.00 0.00 0.00 0.98
237 238 2.800544 CCCGATGAAACGCACCTTATAG 59.199 50.000 0.00 0.00 0.00 1.31
238 239 2.221055 CCGATGAAACGCACCTTATAGC 59.779 50.000 0.00 0.00 0.00 2.97
239 240 2.863740 CGATGAAACGCACCTTATAGCA 59.136 45.455 0.00 0.00 0.00 3.49
240 241 3.060272 CGATGAAACGCACCTTATAGCAG 60.060 47.826 0.00 0.00 0.00 4.24
242 243 3.259064 TGAAACGCACCTTATAGCAGTC 58.741 45.455 0.00 0.00 0.00 3.51
243 244 3.056107 TGAAACGCACCTTATAGCAGTCT 60.056 43.478 0.00 0.00 0.00 3.24
244 245 2.873133 ACGCACCTTATAGCAGTCTC 57.127 50.000 0.00 0.00 0.00 3.36
245 246 1.409427 ACGCACCTTATAGCAGTCTCC 59.591 52.381 0.00 0.00 0.00 3.71
246 247 1.600663 CGCACCTTATAGCAGTCTCCG 60.601 57.143 0.00 0.00 0.00 4.63
247 248 1.409427 GCACCTTATAGCAGTCTCCGT 59.591 52.381 0.00 0.00 0.00 4.69
248 249 2.621998 GCACCTTATAGCAGTCTCCGTA 59.378 50.000 0.00 0.00 0.00 4.02
249 250 3.067742 GCACCTTATAGCAGTCTCCGTAA 59.932 47.826 0.00 0.00 0.00 3.18
250 251 4.441079 GCACCTTATAGCAGTCTCCGTAAA 60.441 45.833 0.00 0.00 0.00 2.01
253 254 2.865343 ATAGCAGTCTCCGTAAACCG 57.135 50.000 0.00 0.00 0.00 4.44
254 255 1.825090 TAGCAGTCTCCGTAAACCGA 58.175 50.000 0.00 0.00 39.56 4.69
256 257 0.458025 GCAGTCTCCGTAAACCGAGG 60.458 60.000 0.00 0.00 39.56 4.63
257 258 1.171308 CAGTCTCCGTAAACCGAGGA 58.829 55.000 0.00 0.00 39.56 3.71
259 260 1.172175 GTCTCCGTAAACCGAGGACT 58.828 55.000 0.00 0.00 39.56 3.85
260 261 2.026822 AGTCTCCGTAAACCGAGGACTA 60.027 50.000 0.00 0.00 42.12 2.59
261 262 2.749621 GTCTCCGTAAACCGAGGACTAA 59.250 50.000 0.00 0.00 39.56 2.24
262 263 2.749621 TCTCCGTAAACCGAGGACTAAC 59.250 50.000 0.00 0.00 39.56 2.34
263 264 2.751806 CTCCGTAAACCGAGGACTAACT 59.248 50.000 0.00 0.00 39.56 2.24
264 265 2.749621 TCCGTAAACCGAGGACTAACTC 59.250 50.000 0.00 0.00 39.56 3.01
265 266 2.159324 CCGTAAACCGAGGACTAACTCC 60.159 54.545 0.00 0.00 39.56 3.85
277 278 5.346181 GGACTAACTCCTAGCTTCAACAT 57.654 43.478 0.00 0.00 35.89 2.71
278 279 5.353111 GGACTAACTCCTAGCTTCAACATC 58.647 45.833 0.00 0.00 35.89 3.06
279 280 5.105310 GGACTAACTCCTAGCTTCAACATCA 60.105 44.000 0.00 0.00 35.89 3.07
280 281 6.360370 ACTAACTCCTAGCTTCAACATCAA 57.640 37.500 0.00 0.00 0.00 2.57
281 282 6.769512 ACTAACTCCTAGCTTCAACATCAAA 58.230 36.000 0.00 0.00 0.00 2.69
282 283 5.948992 AACTCCTAGCTTCAACATCAAAC 57.051 39.130 0.00 0.00 0.00 2.93
283 284 4.973168 ACTCCTAGCTTCAACATCAAACA 58.027 39.130 0.00 0.00 0.00 2.83
284 285 5.564550 ACTCCTAGCTTCAACATCAAACAT 58.435 37.500 0.00 0.00 0.00 2.71
285 286 5.413833 ACTCCTAGCTTCAACATCAAACATG 59.586 40.000 0.00 0.00 0.00 3.21
286 287 5.316167 TCCTAGCTTCAACATCAAACATGT 58.684 37.500 0.00 0.00 0.00 3.21
287 288 5.412594 TCCTAGCTTCAACATCAAACATGTC 59.587 40.000 0.00 0.00 0.00 3.06
288 289 4.510038 AGCTTCAACATCAAACATGTCC 57.490 40.909 0.00 0.00 0.00 4.02
289 290 3.890756 AGCTTCAACATCAAACATGTCCA 59.109 39.130 0.00 0.00 0.00 4.02
290 291 3.983344 GCTTCAACATCAAACATGTCCAC 59.017 43.478 0.00 0.00 0.00 4.02
291 292 4.261741 GCTTCAACATCAAACATGTCCACT 60.262 41.667 0.00 0.00 0.00 4.00
294 295 3.507162 ACATCAAACATGTCCACTCCA 57.493 42.857 0.00 0.00 0.00 3.86
295 296 3.831323 ACATCAAACATGTCCACTCCAA 58.169 40.909 0.00 0.00 0.00 3.53
296 297 4.410099 ACATCAAACATGTCCACTCCAAT 58.590 39.130 0.00 0.00 0.00 3.16
297 298 4.460382 ACATCAAACATGTCCACTCCAATC 59.540 41.667 0.00 0.00 0.00 2.67
298 299 4.371624 TCAAACATGTCCACTCCAATCT 57.628 40.909 0.00 0.00 0.00 2.40
299 300 4.074259 TCAAACATGTCCACTCCAATCTG 58.926 43.478 0.00 0.00 0.00 2.90
300 301 2.119801 ACATGTCCACTCCAATCTGC 57.880 50.000 0.00 0.00 0.00 4.26
301 302 1.340405 ACATGTCCACTCCAATCTGCC 60.340 52.381 0.00 0.00 0.00 4.85
302 303 0.994247 ATGTCCACTCCAATCTGCCA 59.006 50.000 0.00 0.00 0.00 4.92
304 305 0.036732 GTCCACTCCAATCTGCCACA 59.963 55.000 0.00 0.00 0.00 4.17
305 306 0.770499 TCCACTCCAATCTGCCACAA 59.230 50.000 0.00 0.00 0.00 3.33
306 307 1.171308 CCACTCCAATCTGCCACAAG 58.829 55.000 0.00 0.00 0.00 3.16
307 308 0.524862 CACTCCAATCTGCCACAAGC 59.475 55.000 0.00 0.00 44.14 4.01
309 310 0.323178 CTCCAATCTGCCACAAGCCT 60.323 55.000 0.00 0.00 42.71 4.58
310 311 0.112995 TCCAATCTGCCACAAGCCTT 59.887 50.000 0.00 0.00 42.71 4.35
312 313 1.250328 CAATCTGCCACAAGCCTTCA 58.750 50.000 0.00 0.00 42.71 3.02
313 314 1.822990 CAATCTGCCACAAGCCTTCAT 59.177 47.619 0.00 0.00 42.71 2.57
316 317 1.005097 TCTGCCACAAGCCTTCATCAT 59.995 47.619 0.00 0.00 42.71 2.45
317 318 2.239402 TCTGCCACAAGCCTTCATCATA 59.761 45.455 0.00 0.00 42.71 2.15
318 319 3.117776 TCTGCCACAAGCCTTCATCATAT 60.118 43.478 0.00 0.00 42.71 1.78
319 320 3.216800 TGCCACAAGCCTTCATCATATC 58.783 45.455 0.00 0.00 42.71 1.63
322 323 3.819337 CCACAAGCCTTCATCATATCCAG 59.181 47.826 0.00 0.00 0.00 3.86
324 325 4.885907 CACAAGCCTTCATCATATCCAGTT 59.114 41.667 0.00 0.00 0.00 3.16
326 327 5.591877 ACAAGCCTTCATCATATCCAGTTTC 59.408 40.000 0.00 0.00 0.00 2.78
327 328 4.384056 AGCCTTCATCATATCCAGTTTCG 58.616 43.478 0.00 0.00 0.00 3.46
330 331 2.754472 TCATCATATCCAGTTTCGGCG 58.246 47.619 0.00 0.00 0.00 6.46
331 332 1.195448 CATCATATCCAGTTTCGGCGC 59.805 52.381 0.00 0.00 0.00 6.53
332 333 0.176910 TCATATCCAGTTTCGGCGCA 59.823 50.000 10.83 0.00 0.00 6.09
333 334 0.304705 CATATCCAGTTTCGGCGCAC 59.695 55.000 10.83 0.65 0.00 5.34
335 336 0.107897 TATCCAGTTTCGGCGCACAT 60.108 50.000 10.83 0.00 0.00 3.21
336 337 0.107897 ATCCAGTTTCGGCGCACATA 60.108 50.000 10.83 0.00 0.00 2.29
337 338 0.320858 TCCAGTTTCGGCGCACATAA 60.321 50.000 10.83 0.00 0.00 1.90
338 339 0.519519 CCAGTTTCGGCGCACATAAA 59.480 50.000 10.83 0.20 0.00 1.40
340 341 0.165079 AGTTTCGGCGCACATAAACG 59.835 50.000 10.83 0.75 37.02 3.60
341 342 0.791610 GTTTCGGCGCACATAAACGG 60.792 55.000 10.83 0.00 0.00 4.44
343 344 1.229315 TTCGGCGCACATAAACGGTT 61.229 50.000 10.83 0.00 0.00 4.44
344 345 0.389556 TCGGCGCACATAAACGGTTA 60.390 50.000 10.83 0.00 0.00 2.85
346 347 0.097499 GGCGCACATAAACGGTTACC 59.903 55.000 10.83 0.00 0.00 2.85
348 349 1.729284 CGCACATAAACGGTTACCCT 58.271 50.000 0.00 0.00 0.00 4.34
349 350 2.078392 CGCACATAAACGGTTACCCTT 58.922 47.619 0.00 0.00 0.00 3.95
350 351 3.260740 CGCACATAAACGGTTACCCTTA 58.739 45.455 0.00 0.00 0.00 2.69
351 352 3.307782 CGCACATAAACGGTTACCCTTAG 59.692 47.826 0.00 0.00 0.00 2.18
352 353 4.256110 GCACATAAACGGTTACCCTTAGT 58.744 43.478 0.00 0.00 0.00 2.24
353 354 4.696877 GCACATAAACGGTTACCCTTAGTT 59.303 41.667 0.00 0.00 0.00 2.24
354 355 5.181811 GCACATAAACGGTTACCCTTAGTTT 59.818 40.000 0.00 9.39 38.40 2.66
355 356 6.294120 GCACATAAACGGTTACCCTTAGTTTT 60.294 38.462 9.65 0.00 36.56 2.43
356 357 7.300320 CACATAAACGGTTACCCTTAGTTTTC 58.700 38.462 9.65 0.00 36.56 2.29
358 359 4.712051 AACGGTTACCCTTAGTTTTCCT 57.288 40.909 0.00 0.00 0.00 3.36
359 360 4.712051 ACGGTTACCCTTAGTTTTCCTT 57.288 40.909 0.00 0.00 0.00 3.36
360 361 4.392047 ACGGTTACCCTTAGTTTTCCTTG 58.608 43.478 0.00 0.00 0.00 3.61
361 362 3.754850 CGGTTACCCTTAGTTTTCCTTGG 59.245 47.826 0.00 0.00 0.00 3.61
363 364 4.404640 GTTACCCTTAGTTTTCCTTGGCT 58.595 43.478 0.00 0.00 0.00 4.75
364 365 3.612795 ACCCTTAGTTTTCCTTGGCTT 57.387 42.857 0.00 0.00 0.00 4.35
365 366 3.497332 ACCCTTAGTTTTCCTTGGCTTC 58.503 45.455 0.00 0.00 0.00 3.86
366 367 3.117284 ACCCTTAGTTTTCCTTGGCTTCA 60.117 43.478 0.00 0.00 0.00 3.02
367 368 4.089361 CCCTTAGTTTTCCTTGGCTTCAT 58.911 43.478 0.00 0.00 0.00 2.57
368 369 5.222254 ACCCTTAGTTTTCCTTGGCTTCATA 60.222 40.000 0.00 0.00 0.00 2.15
369 370 5.893824 CCCTTAGTTTTCCTTGGCTTCATAT 59.106 40.000 0.00 0.00 0.00 1.78
371 372 7.559897 CCCTTAGTTTTCCTTGGCTTCATATAA 59.440 37.037 0.00 0.00 0.00 0.98
372 373 9.136323 CCTTAGTTTTCCTTGGCTTCATATAAT 57.864 33.333 0.00 0.00 0.00 1.28
373 374 9.956720 CTTAGTTTTCCTTGGCTTCATATAATG 57.043 33.333 0.00 0.00 0.00 1.90
374 375 9.693739 TTAGTTTTCCTTGGCTTCATATAATGA 57.306 29.630 0.00 0.00 37.55 2.57
375 376 8.593945 AGTTTTCCTTGGCTTCATATAATGAA 57.406 30.769 2.60 2.60 46.30 2.57
389 390 0.882042 AATGAAGCGCTCATAGGCCG 60.882 55.000 12.06 0.00 44.43 6.13
390 391 2.032860 ATGAAGCGCTCATAGGCCGT 62.033 55.000 12.06 0.00 43.32 5.68
391 392 1.521681 GAAGCGCTCATAGGCCGTT 60.522 57.895 12.06 0.00 0.00 4.44
392 393 0.249322 GAAGCGCTCATAGGCCGTTA 60.249 55.000 12.06 0.00 0.00 3.18
393 394 0.393077 AAGCGCTCATAGGCCGTTAT 59.607 50.000 12.06 0.00 0.00 1.89
394 395 0.319900 AGCGCTCATAGGCCGTTATG 60.320 55.000 2.64 5.78 33.30 1.90
395 396 0.319555 GCGCTCATAGGCCGTTATGA 60.320 55.000 12.74 12.74 37.63 2.15
396 397 1.872237 GCGCTCATAGGCCGTTATGAA 60.872 52.381 13.94 1.77 39.02 2.57
397 398 2.479837 CGCTCATAGGCCGTTATGAAA 58.520 47.619 13.94 0.00 39.02 2.69
398 399 3.067106 CGCTCATAGGCCGTTATGAAAT 58.933 45.455 13.94 0.00 39.02 2.17
399 400 3.498397 CGCTCATAGGCCGTTATGAAATT 59.502 43.478 13.94 0.00 39.02 1.82
400 401 4.611355 CGCTCATAGGCCGTTATGAAATTG 60.611 45.833 13.94 5.70 39.02 2.32
401 402 4.275936 GCTCATAGGCCGTTATGAAATTGT 59.724 41.667 13.94 0.00 39.02 2.71
403 404 5.189928 TCATAGGCCGTTATGAAATTGTGT 58.810 37.500 11.33 0.00 37.17 3.72
405 406 3.153919 AGGCCGTTATGAAATTGTGTGT 58.846 40.909 0.00 0.00 0.00 3.72
406 407 3.057596 AGGCCGTTATGAAATTGTGTGTG 60.058 43.478 0.00 0.00 0.00 3.82
407 408 3.057876 GGCCGTTATGAAATTGTGTGTGA 60.058 43.478 0.00 0.00 0.00 3.58
410 411 5.618863 GCCGTTATGAAATTGTGTGTGATGA 60.619 40.000 0.00 0.00 0.00 2.92
411 412 6.023435 CCGTTATGAAATTGTGTGTGATGAG 58.977 40.000 0.00 0.00 0.00 2.90
412 413 6.128309 CCGTTATGAAATTGTGTGTGATGAGA 60.128 38.462 0.00 0.00 0.00 3.27
414 415 4.730600 TGAAATTGTGTGTGATGAGACG 57.269 40.909 0.00 0.00 0.00 4.18
415 416 4.126437 TGAAATTGTGTGTGATGAGACGT 58.874 39.130 0.00 0.00 0.00 4.34
416 417 4.574421 TGAAATTGTGTGTGATGAGACGTT 59.426 37.500 0.00 0.00 0.00 3.99
417 418 4.732285 AATTGTGTGTGATGAGACGTTC 57.268 40.909 0.00 0.00 0.00 3.95
418 419 2.880963 TGTGTGTGATGAGACGTTCA 57.119 45.000 0.00 0.00 40.85 3.18
419 420 2.742774 TGTGTGTGATGAGACGTTCAG 58.257 47.619 0.00 0.00 39.68 3.02
420 421 2.061773 GTGTGTGATGAGACGTTCAGG 58.938 52.381 0.00 0.00 39.68 3.86
422 423 2.888414 TGTGTGATGAGACGTTCAGGTA 59.112 45.455 0.00 0.00 39.68 3.08
423 424 3.243336 GTGTGATGAGACGTTCAGGTAC 58.757 50.000 0.00 0.00 39.68 3.34
425 426 3.057526 TGTGATGAGACGTTCAGGTACAG 60.058 47.826 0.00 0.00 39.68 2.74
427 428 3.190744 TGATGAGACGTTCAGGTACAGAC 59.809 47.826 0.00 0.00 39.68 3.51
428 429 1.534163 TGAGACGTTCAGGTACAGACG 59.466 52.381 0.00 1.72 0.00 4.18
429 430 0.240411 AGACGTTCAGGTACAGACGC 59.760 55.000 0.00 0.00 0.00 5.19
431 432 0.039437 ACGTTCAGGTACAGACGCAG 60.039 55.000 0.00 0.00 0.00 5.18
432 433 0.240145 CGTTCAGGTACAGACGCAGA 59.760 55.000 0.00 0.00 0.00 4.26
433 434 1.135373 CGTTCAGGTACAGACGCAGAT 60.135 52.381 0.00 0.00 0.00 2.90
434 435 2.671351 CGTTCAGGTACAGACGCAGATT 60.671 50.000 0.00 0.00 0.00 2.40
435 436 2.654749 TCAGGTACAGACGCAGATTG 57.345 50.000 0.00 0.00 0.00 2.67
436 437 1.002366 CAGGTACAGACGCAGATTGC 58.998 55.000 0.00 0.00 40.69 3.56
437 438 0.898320 AGGTACAGACGCAGATTGCT 59.102 50.000 0.00 0.00 42.25 3.91
439 440 1.134965 GGTACAGACGCAGATTGCTCT 60.135 52.381 0.00 0.00 42.25 4.09
440 441 2.611518 GTACAGACGCAGATTGCTCTT 58.388 47.619 0.00 0.00 42.25 2.85
441 442 1.436600 ACAGACGCAGATTGCTCTTG 58.563 50.000 0.00 0.00 42.25 3.02
442 443 1.001293 ACAGACGCAGATTGCTCTTGA 59.999 47.619 0.00 0.00 42.25 3.02
443 444 1.659601 CAGACGCAGATTGCTCTTGAG 59.340 52.381 0.00 0.00 42.25 3.02
444 445 1.547820 AGACGCAGATTGCTCTTGAGA 59.452 47.619 1.30 0.00 42.25 3.27
446 447 1.547820 ACGCAGATTGCTCTTGAGAGA 59.452 47.619 12.07 0.00 44.74 3.10
447 448 2.168106 ACGCAGATTGCTCTTGAGAGAT 59.832 45.455 12.07 0.00 44.74 2.75
448 449 3.196463 CGCAGATTGCTCTTGAGAGATT 58.804 45.455 12.07 0.00 44.74 2.40
449 450 4.142071 ACGCAGATTGCTCTTGAGAGATTA 60.142 41.667 12.07 0.00 44.74 1.75
450 451 4.989797 CGCAGATTGCTCTTGAGAGATTAT 59.010 41.667 12.07 1.72 44.74 1.28
451 452 5.466058 CGCAGATTGCTCTTGAGAGATTATT 59.534 40.000 12.07 0.00 44.74 1.40
453 454 6.707161 GCAGATTGCTCTTGAGAGATTATTCT 59.293 38.462 12.07 5.85 44.74 2.40
467 468 7.790782 GAGATTATTCTCCCTGAGGTAATCT 57.209 40.000 16.65 16.65 42.77 2.40
468 469 7.790782 AGATTATTCTCCCTGAGGTAATCTC 57.209 40.000 12.86 5.00 40.03 2.75
470 471 8.683445 AGATTATTCTCCCTGAGGTAATCTCTA 58.317 37.037 12.86 0.00 40.03 2.43
473 474 6.538209 TTCTCCCTGAGGTAATCTCTATCT 57.462 41.667 0.00 0.00 42.86 1.98
474 475 6.538209 TCTCCCTGAGGTAATCTCTATCTT 57.462 41.667 0.00 0.00 42.86 2.40
475 476 6.548321 TCTCCCTGAGGTAATCTCTATCTTC 58.452 44.000 0.00 0.00 42.86 2.87
476 477 6.334237 TCTCCCTGAGGTAATCTCTATCTTCT 59.666 42.308 0.00 0.00 42.86 2.85
477 478 6.928202 TCCCTGAGGTAATCTCTATCTTCTT 58.072 40.000 0.00 0.00 42.86 2.52
479 480 7.010160 CCCTGAGGTAATCTCTATCTTCTTCT 58.990 42.308 0.00 0.00 42.86 2.85
480 481 8.167392 CCCTGAGGTAATCTCTATCTTCTTCTA 58.833 40.741 0.00 0.00 42.86 2.10
481 482 9.753674 CCTGAGGTAATCTCTATCTTCTTCTAT 57.246 37.037 0.00 0.00 42.86 1.98
519 520 6.855763 TTTTTAGCTGGTGATGAATGGATT 57.144 33.333 0.00 0.00 0.00 3.01
521 522 5.840243 TTAGCTGGTGATGAATGGATTTG 57.160 39.130 0.00 0.00 0.00 2.32
522 523 3.705051 AGCTGGTGATGAATGGATTTGT 58.295 40.909 0.00 0.00 0.00 2.83
523 524 4.091549 AGCTGGTGATGAATGGATTTGTT 58.908 39.130 0.00 0.00 0.00 2.83
526 527 5.702209 GCTGGTGATGAATGGATTTGTTTTT 59.298 36.000 0.00 0.00 0.00 1.94
527 528 6.128472 GCTGGTGATGAATGGATTTGTTTTTC 60.128 38.462 0.00 0.00 0.00 2.29
528 529 7.065120 TGGTGATGAATGGATTTGTTTTTCT 57.935 32.000 0.00 0.00 0.00 2.52
530 531 7.992033 TGGTGATGAATGGATTTGTTTTTCTTT 59.008 29.630 0.00 0.00 0.00 2.52
531 532 8.498358 GGTGATGAATGGATTTGTTTTTCTTTC 58.502 33.333 0.00 0.00 0.00 2.62
532 533 9.264719 GTGATGAATGGATTTGTTTTTCTTTCT 57.735 29.630 0.00 0.00 0.00 2.52
533 534 9.835389 TGATGAATGGATTTGTTTTTCTTTCTT 57.165 25.926 0.00 0.00 0.00 2.52
568 569 9.705103 AAAGATGAATGGATTTCTAAATGGAGA 57.295 29.630 0.00 0.00 35.23 3.71
569 570 9.705103 AAGATGAATGGATTTCTAAATGGAGAA 57.295 29.630 0.00 0.00 35.23 2.87
570 571 9.352191 AGATGAATGGATTTCTAAATGGAGAAG 57.648 33.333 0.00 0.00 36.80 2.85
571 572 9.347240 GATGAATGGATTTCTAAATGGAGAAGA 57.653 33.333 0.00 0.00 36.80 2.87
572 573 8.743085 TGAATGGATTTCTAAATGGAGAAGAG 57.257 34.615 0.00 0.00 36.80 2.85
573 574 7.776969 TGAATGGATTTCTAAATGGAGAAGAGG 59.223 37.037 0.00 0.00 36.80 3.69
574 575 6.891306 TGGATTTCTAAATGGAGAAGAGGA 57.109 37.500 0.00 0.00 36.80 3.71
576 577 7.285566 TGGATTTCTAAATGGAGAAGAGGATG 58.714 38.462 0.00 0.00 36.80 3.51
577 578 7.127801 TGGATTTCTAAATGGAGAAGAGGATGA 59.872 37.037 0.00 0.00 36.80 2.92
578 579 8.162746 GGATTTCTAAATGGAGAAGAGGATGAT 58.837 37.037 0.00 0.00 36.80 2.45
579 580 8.921353 ATTTCTAAATGGAGAAGAGGATGATG 57.079 34.615 0.00 0.00 36.80 3.07
581 582 7.443302 TCTAAATGGAGAAGAGGATGATGTT 57.557 36.000 0.00 0.00 0.00 2.71
582 583 7.865820 TCTAAATGGAGAAGAGGATGATGTTT 58.134 34.615 0.00 0.00 0.00 2.83
583 584 7.989741 TCTAAATGGAGAAGAGGATGATGTTTC 59.010 37.037 0.00 0.00 0.00 2.78
584 585 5.972327 ATGGAGAAGAGGATGATGTTTCT 57.028 39.130 0.00 0.00 0.00 2.52
585 586 7.443302 AATGGAGAAGAGGATGATGTTTCTA 57.557 36.000 0.00 0.00 0.00 2.10
586 587 6.874278 TGGAGAAGAGGATGATGTTTCTAA 57.126 37.500 0.00 0.00 0.00 2.10
587 588 7.257790 TGGAGAAGAGGATGATGTTTCTAAA 57.742 36.000 0.00 0.00 0.00 1.85
588 589 7.689299 TGGAGAAGAGGATGATGTTTCTAAAA 58.311 34.615 0.00 0.00 0.00 1.52
589 590 8.163408 TGGAGAAGAGGATGATGTTTCTAAAAA 58.837 33.333 0.00 0.00 0.00 1.94
610 611 2.174685 AAAGGATAATGGGCCCAACC 57.825 50.000 32.58 27.16 37.93 3.77
611 612 0.106217 AAGGATAATGGGCCCAACCG 60.106 55.000 32.58 0.00 40.62 4.44
612 613 2.200337 GGATAATGGGCCCAACCGC 61.200 63.158 32.58 18.65 40.62 5.68
620 621 2.048316 GCCCAACCGCCACAAATG 60.048 61.111 0.00 0.00 0.00 2.32
657 658 2.361104 GCTGAACATGGGCCGGAA 60.361 61.111 5.05 0.00 0.00 4.30
661 662 1.202099 TGAACATGGGCCGGAACCTA 61.202 55.000 5.05 0.00 0.00 3.08
688 689 4.047125 GCCAGCCCAGCCCACTAA 62.047 66.667 0.00 0.00 0.00 2.24
690 691 2.606587 CCAGCCCAGCCCACTAACT 61.607 63.158 0.00 0.00 0.00 2.24
692 693 1.229658 AGCCCAGCCCACTAACTCT 60.230 57.895 0.00 0.00 0.00 3.24
706 707 4.530857 CTCTAGGGCCCAACGCGG 62.531 72.222 27.56 6.94 38.94 6.46
718 719 1.598430 CCAACGCGGAAAACACGAAAT 60.598 47.619 12.47 0.00 36.56 2.17
720 721 3.484683 CAACGCGGAAAACACGAAATAT 58.515 40.909 12.47 0.00 0.00 1.28
734 735 1.286305 AAATATCCAGGGGCCCGTGT 61.286 55.000 35.98 24.32 0.00 4.49
968 3941 1.453379 GGGACGGAGATCTCACGGA 60.453 63.158 26.61 0.00 0.00 4.69
973 3946 1.825474 ACGGAGATCTCACGGATTGTT 59.175 47.619 26.61 10.58 34.33 2.83
974 3947 2.233922 ACGGAGATCTCACGGATTGTTT 59.766 45.455 26.61 10.06 34.33 2.83
975 3948 2.604914 CGGAGATCTCACGGATTGTTTG 59.395 50.000 23.85 0.00 34.33 2.93
976 3949 3.600388 GGAGATCTCACGGATTGTTTGT 58.400 45.455 23.85 0.00 34.33 2.83
977 3950 4.003648 GGAGATCTCACGGATTGTTTGTT 58.996 43.478 23.85 0.00 34.33 2.83
978 3951 4.455877 GGAGATCTCACGGATTGTTTGTTT 59.544 41.667 23.85 0.00 34.33 2.83
979 3952 5.362556 AGATCTCACGGATTGTTTGTTTG 57.637 39.130 0.00 0.00 34.33 2.93
980 3953 3.980646 TCTCACGGATTGTTTGTTTGG 57.019 42.857 0.00 0.00 0.00 3.28
981 3954 3.283751 TCTCACGGATTGTTTGTTTGGT 58.716 40.909 0.00 0.00 0.00 3.67
982 3955 3.066064 TCTCACGGATTGTTTGTTTGGTG 59.934 43.478 0.00 0.00 0.00 4.17
983 3956 2.099921 TCACGGATTGTTTGTTTGGTGG 59.900 45.455 0.00 0.00 0.00 4.61
984 3957 1.202475 ACGGATTGTTTGTTTGGTGGC 60.202 47.619 0.00 0.00 0.00 5.01
985 3958 1.068434 CGGATTGTTTGTTTGGTGGCT 59.932 47.619 0.00 0.00 0.00 4.75
986 3959 2.482864 GGATTGTTTGTTTGGTGGCTG 58.517 47.619 0.00 0.00 0.00 4.85
987 3960 2.482864 GATTGTTTGTTTGGTGGCTGG 58.517 47.619 0.00 0.00 0.00 4.85
1335 4353 2.815647 CGCCCTTTCGGTGCTCTC 60.816 66.667 0.00 0.00 34.69 3.20
1370 4388 1.267932 GCTGCTTGCTTCTGCTTATCG 60.268 52.381 0.00 0.00 40.48 2.92
1407 4425 4.394729 TGGGGATTACTGACTTGTTTGTC 58.605 43.478 0.00 0.00 37.47 3.18
1540 5064 6.572167 TGATGATGCAAGTTGTAACATTCA 57.428 33.333 15.84 12.49 26.93 2.57
1653 6756 9.388506 CTTAATTGTCCTAGTCAATCTGAACAT 57.611 33.333 9.71 0.00 34.92 2.71
1654 6757 9.739276 TTAATTGTCCTAGTCAATCTGAACATT 57.261 29.630 9.71 0.00 34.92 2.71
1695 6801 3.618019 GCACCCGATTAGTCTTGTAACCA 60.618 47.826 0.00 0.00 0.00 3.67
1747 6911 3.221771 TGACATGCCTGCTGTTAAAACT 58.778 40.909 0.00 0.00 0.00 2.66
1761 6984 6.404954 GCTGTTAAAACTTGTGTTCACCCTAA 60.405 38.462 0.37 0.00 34.96 2.69
1762 6985 7.648039 TGTTAAAACTTGTGTTCACCCTAAT 57.352 32.000 0.37 0.00 34.96 1.73
1763 6986 8.749026 TGTTAAAACTTGTGTTCACCCTAATA 57.251 30.769 0.37 0.00 34.96 0.98
1772 6995 7.328277 TGTGTTCACCCTAATAATATGTTGC 57.672 36.000 0.37 0.00 0.00 4.17
1804 7027 6.321181 TGAATTACTGTTTCTCTGGCACTTTT 59.679 34.615 0.00 0.00 0.00 2.27
1805 7028 5.499139 TTACTGTTTCTCTGGCACTTTTG 57.501 39.130 0.00 0.00 0.00 2.44
1924 7147 0.247736 ATGCGACACTCCTTCTGACC 59.752 55.000 0.00 0.00 0.00 4.02
1995 7218 6.711277 TGATTTATAGAAAGTCTGTGCTGGT 58.289 36.000 0.00 0.00 0.00 4.00
2023 7246 5.136828 TGGCTTCAAGTATTTGACTTCCAA 58.863 37.500 0.00 0.00 45.81 3.53
2143 7368 2.823154 TGTACTGGCAATTGGGCTTAAC 59.177 45.455 7.72 1.91 43.83 2.01
2156 7381 5.450818 TGGGCTTAACATTTATGACCTCT 57.549 39.130 5.55 0.00 0.00 3.69
2175 7400 8.208224 TGACCTCTGTTTTATTACTTGTTGAGA 58.792 33.333 0.00 0.00 0.00 3.27
2192 7417 5.070446 TGTTGAGAGACTCACATTACCTGTT 59.930 40.000 5.02 0.00 40.46 3.16
2193 7418 5.139435 TGAGAGACTCACATTACCTGTTG 57.861 43.478 5.02 0.00 35.39 3.33
2194 7419 3.929610 GAGAGACTCACATTACCTGTTGC 59.070 47.826 5.02 0.00 35.29 4.17
2195 7420 3.003480 GAGACTCACATTACCTGTTGCC 58.997 50.000 0.00 0.00 35.29 4.52
2196 7421 2.639839 AGACTCACATTACCTGTTGCCT 59.360 45.455 0.00 0.00 35.29 4.75
2200 7425 5.381757 ACTCACATTACCTGTTGCCTTTTA 58.618 37.500 0.00 0.00 35.29 1.52
2254 7521 3.058708 TCCTGTACTCGTGTCACTTAACG 60.059 47.826 0.65 0.00 41.11 3.18
2271 7538 1.738099 CGCAAGTCGGCTGCTAGTT 60.738 57.895 9.24 0.00 33.78 2.24
2358 7655 5.929992 TCAGTTCCTGTTACGTTTCATAAGG 59.070 40.000 0.00 0.00 32.61 2.69
2408 7705 4.455877 GCACTAGTTTATGAAAGCACCAGT 59.544 41.667 0.00 0.00 0.00 4.00
2603 7900 3.625649 AGGAGACAAAAGCCTGATCTC 57.374 47.619 0.00 0.00 35.99 2.75
2612 7913 4.953940 AAAGCCTGATCTCATAGACTCC 57.046 45.455 0.00 0.00 0.00 3.85
2618 7919 0.188587 ATCTCATAGACTCCGCCCCA 59.811 55.000 0.00 0.00 0.00 4.96
2647 7948 2.993899 CGAAGCGTTACTTGACCTGAAT 59.006 45.455 0.00 0.00 39.29 2.57
2653 7954 4.332819 GCGTTACTTGACCTGAATTGCTAT 59.667 41.667 0.00 0.00 0.00 2.97
2826 8131 5.826601 TGATGATTGCATACCGCTTTTTA 57.173 34.783 0.00 0.00 43.06 1.52
2878 8183 1.683385 GCCTTTGGTGAGTTTTGCTCT 59.317 47.619 0.00 0.00 44.41 4.09
3022 8540 3.087031 CTGCTTTTGATGATGACACCCT 58.913 45.455 0.00 0.00 0.00 4.34
3120 8642 5.978919 TGTAGCAGCATTTTGAAGTCTTTTG 59.021 36.000 0.00 0.00 0.00 2.44
3342 8903 1.066430 CCCTTAGTTACCAAGCGAGCA 60.066 52.381 0.00 0.00 0.00 4.26
3345 8906 3.326747 CTTAGTTACCAAGCGAGCAAGT 58.673 45.455 0.00 0.00 0.00 3.16
3346 8907 1.512926 AGTTACCAAGCGAGCAAGTG 58.487 50.000 0.00 0.00 0.00 3.16
3357 8918 1.859703 CGAGCAAGTGAGCATGATCTC 59.140 52.381 12.92 8.80 36.85 2.75
3366 8927 5.049167 AGTGAGCATGATCTCGAATTCTTC 58.951 41.667 12.92 0.00 35.90 2.87
3367 8928 5.049167 GTGAGCATGATCTCGAATTCTTCT 58.951 41.667 12.92 0.00 35.90 2.85
3372 8933 5.233050 GCATGATCTCGAATTCTTCTCGAAA 59.767 40.000 3.52 0.00 44.18 3.46
3373 8934 6.073873 GCATGATCTCGAATTCTTCTCGAAAT 60.074 38.462 3.52 0.00 44.18 2.17
3374 8935 7.500691 CATGATCTCGAATTCTTCTCGAAATC 58.499 38.462 3.52 2.42 44.18 2.17
3375 8936 6.800543 TGATCTCGAATTCTTCTCGAAATCT 58.199 36.000 3.52 0.00 44.18 2.40
3376 8937 7.931275 TGATCTCGAATTCTTCTCGAAATCTA 58.069 34.615 3.52 0.00 44.18 1.98
3377 8938 8.073167 TGATCTCGAATTCTTCTCGAAATCTAG 58.927 37.037 3.52 0.00 44.18 2.43
3422 8995 6.516860 GCTCATTCTGGTAATGTCTACCGTAT 60.517 42.308 0.00 0.00 40.39 3.06
3444 9017 1.345112 CCCTACCCTGGGGATTGTACT 60.345 57.143 18.88 0.00 46.50 2.73
3446 9019 2.478292 CTACCCTGGGGATTGTACTGT 58.522 52.381 18.88 0.00 38.96 3.55
3447 9020 2.653543 ACCCTGGGGATTGTACTGTA 57.346 50.000 18.88 0.00 38.96 2.74
3448 9021 2.193993 ACCCTGGGGATTGTACTGTAC 58.806 52.381 18.88 10.98 38.96 2.90
3481 9054 4.562347 CCTCATCCCTCGGATTGATTGTAG 60.562 50.000 0.00 0.00 39.79 2.74
3485 9058 4.030913 TCCCTCGGATTGATTGTAGTTCT 58.969 43.478 0.00 0.00 0.00 3.01
3523 9096 4.943142 CTGAGCTTCAGGATCTGTTTTC 57.057 45.455 0.00 0.00 40.71 2.29
3524 9097 4.321718 CTGAGCTTCAGGATCTGTTTTCA 58.678 43.478 0.00 0.00 40.71 2.69
3525 9098 4.914983 TGAGCTTCAGGATCTGTTTTCAT 58.085 39.130 0.00 0.00 32.61 2.57
3528 9125 5.568392 AGCTTCAGGATCTGTTTTCATCTT 58.432 37.500 0.00 0.00 32.61 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.667626 TCTTTTACCAATGATAGCCTCCTCT 59.332 40.000 0.00 0.00 0.00 3.69
1 2 5.930135 TCTTTTACCAATGATAGCCTCCTC 58.070 41.667 0.00 0.00 0.00 3.71
3 4 5.930135 TCTCTTTTACCAATGATAGCCTCC 58.070 41.667 0.00 0.00 0.00 4.30
4 5 6.484977 CCTTCTCTTTTACCAATGATAGCCTC 59.515 42.308 0.00 0.00 0.00 4.70
6 7 6.122964 ACCTTCTCTTTTACCAATGATAGCC 58.877 40.000 0.00 0.00 0.00 3.93
8 9 9.892130 AACTACCTTCTCTTTTACCAATGATAG 57.108 33.333 0.00 0.00 0.00 2.08
9 10 9.667107 CAACTACCTTCTCTTTTACCAATGATA 57.333 33.333 0.00 0.00 0.00 2.15
11 12 7.741785 TCAACTACCTTCTCTTTTACCAATGA 58.258 34.615 0.00 0.00 0.00 2.57
12 13 7.979444 TCAACTACCTTCTCTTTTACCAATG 57.021 36.000 0.00 0.00 0.00 2.82
13 14 9.892130 CTATCAACTACCTTCTCTTTTACCAAT 57.108 33.333 0.00 0.00 0.00 3.16
14 15 9.096823 TCTATCAACTACCTTCTCTTTTACCAA 57.903 33.333 0.00 0.00 0.00 3.67
15 16 8.660295 TCTATCAACTACCTTCTCTTTTACCA 57.340 34.615 0.00 0.00 0.00 3.25
16 17 9.589111 CTTCTATCAACTACCTTCTCTTTTACC 57.411 37.037 0.00 0.00 0.00 2.85
17 18 9.589111 CCTTCTATCAACTACCTTCTCTTTTAC 57.411 37.037 0.00 0.00 0.00 2.01
21 22 7.186268 ACTCCTTCTATCAACTACCTTCTCTT 58.814 38.462 0.00 0.00 0.00 2.85
22 23 6.737608 ACTCCTTCTATCAACTACCTTCTCT 58.262 40.000 0.00 0.00 0.00 3.10
23 24 7.262048 CAACTCCTTCTATCAACTACCTTCTC 58.738 42.308 0.00 0.00 0.00 2.87
25 26 5.813157 GCAACTCCTTCTATCAACTACCTTC 59.187 44.000 0.00 0.00 0.00 3.46
26 27 5.624738 CGCAACTCCTTCTATCAACTACCTT 60.625 44.000 0.00 0.00 0.00 3.50
27 28 4.142138 CGCAACTCCTTCTATCAACTACCT 60.142 45.833 0.00 0.00 0.00 3.08
28 29 4.113354 CGCAACTCCTTCTATCAACTACC 58.887 47.826 0.00 0.00 0.00 3.18
29 30 4.745649 ACGCAACTCCTTCTATCAACTAC 58.254 43.478 0.00 0.00 0.00 2.73
30 31 5.401531 AACGCAACTCCTTCTATCAACTA 57.598 39.130 0.00 0.00 0.00 2.24
32 33 4.033014 GCTAACGCAACTCCTTCTATCAAC 59.967 45.833 0.00 0.00 35.78 3.18
33 34 4.181578 GCTAACGCAACTCCTTCTATCAA 58.818 43.478 0.00 0.00 35.78 2.57
34 35 3.430374 GGCTAACGCAACTCCTTCTATCA 60.430 47.826 0.00 0.00 38.10 2.15
35 36 3.124560 GGCTAACGCAACTCCTTCTATC 58.875 50.000 0.00 0.00 38.10 2.08
36 37 2.500098 TGGCTAACGCAACTCCTTCTAT 59.500 45.455 0.00 0.00 38.10 1.98
37 38 1.897133 TGGCTAACGCAACTCCTTCTA 59.103 47.619 0.00 0.00 38.10 2.10
38 39 0.685097 TGGCTAACGCAACTCCTTCT 59.315 50.000 0.00 0.00 38.10 2.85
41 42 4.695560 GTGGCTAACGCAACTCCT 57.304 55.556 0.00 0.00 37.11 3.69
45 46 1.332375 TGTTTCAGTGGCTAACGCAAC 59.668 47.619 0.00 0.00 40.55 4.17
46 47 1.332375 GTGTTTCAGTGGCTAACGCAA 59.668 47.619 10.38 0.00 38.10 4.85
47 48 0.941542 GTGTTTCAGTGGCTAACGCA 59.058 50.000 10.38 0.00 38.10 5.24
48 49 0.237498 GGTGTTTCAGTGGCTAACGC 59.763 55.000 8.02 8.02 0.00 4.84
49 50 1.263217 GTGGTGTTTCAGTGGCTAACG 59.737 52.381 0.00 0.00 0.00 3.18
51 52 1.139256 TCGTGGTGTTTCAGTGGCTAA 59.861 47.619 0.00 0.00 0.00 3.09
52 53 0.753867 TCGTGGTGTTTCAGTGGCTA 59.246 50.000 0.00 0.00 0.00 3.93
53 54 0.107410 TTCGTGGTGTTTCAGTGGCT 60.107 50.000 0.00 0.00 0.00 4.75
54 55 0.028902 GTTCGTGGTGTTTCAGTGGC 59.971 55.000 0.00 0.00 0.00 5.01
55 56 1.597663 GAGTTCGTGGTGTTTCAGTGG 59.402 52.381 0.00 0.00 0.00 4.00
57 58 1.208535 TGGAGTTCGTGGTGTTTCAGT 59.791 47.619 0.00 0.00 0.00 3.41
58 59 1.948104 TGGAGTTCGTGGTGTTTCAG 58.052 50.000 0.00 0.00 0.00 3.02
59 60 2.631160 ATGGAGTTCGTGGTGTTTCA 57.369 45.000 0.00 0.00 0.00 2.69
60 61 3.187842 GGTAATGGAGTTCGTGGTGTTTC 59.812 47.826 0.00 0.00 0.00 2.78
61 62 3.143728 GGTAATGGAGTTCGTGGTGTTT 58.856 45.455 0.00 0.00 0.00 2.83
62 63 2.370849 AGGTAATGGAGTTCGTGGTGTT 59.629 45.455 0.00 0.00 0.00 3.32
64 65 2.742053 CAAGGTAATGGAGTTCGTGGTG 59.258 50.000 0.00 0.00 0.00 4.17
65 66 2.290071 CCAAGGTAATGGAGTTCGTGGT 60.290 50.000 0.00 0.00 43.54 4.16
67 68 2.356135 CCCAAGGTAATGGAGTTCGTG 58.644 52.381 0.00 0.00 43.54 4.35
68 69 1.339727 GCCCAAGGTAATGGAGTTCGT 60.340 52.381 0.00 0.00 43.54 3.85
69 70 1.065418 AGCCCAAGGTAATGGAGTTCG 60.065 52.381 0.00 0.00 43.54 3.95
70 71 2.808906 AGCCCAAGGTAATGGAGTTC 57.191 50.000 0.00 0.00 43.54 3.01
71 72 3.542969 AAAGCCCAAGGTAATGGAGTT 57.457 42.857 0.00 0.00 43.54 3.01
72 73 3.542969 AAAAGCCCAAGGTAATGGAGT 57.457 42.857 0.00 0.00 43.54 3.85
74 75 4.938575 TCTAAAAGCCCAAGGTAATGGA 57.061 40.909 0.00 0.00 43.54 3.41
77 78 4.023980 GCCTTCTAAAAGCCCAAGGTAAT 58.976 43.478 0.00 0.00 38.17 1.89
78 79 3.181427 TGCCTTCTAAAAGCCCAAGGTAA 60.181 43.478 0.00 0.00 38.17 2.85
79 80 2.377193 TGCCTTCTAAAAGCCCAAGGTA 59.623 45.455 0.00 0.00 38.17 3.08
80 81 1.146982 TGCCTTCTAAAAGCCCAAGGT 59.853 47.619 0.00 0.00 38.17 3.50
83 84 2.247358 CCTTGCCTTCTAAAAGCCCAA 58.753 47.619 0.00 0.00 0.00 4.12
85 86 0.532573 GCCTTGCCTTCTAAAAGCCC 59.467 55.000 0.00 0.00 0.00 5.19
86 87 1.203287 CTGCCTTGCCTTCTAAAAGCC 59.797 52.381 0.00 0.00 0.00 4.35
87 88 1.203287 CCTGCCTTGCCTTCTAAAAGC 59.797 52.381 0.00 0.00 0.00 3.51
89 90 1.256812 GCCTGCCTTGCCTTCTAAAA 58.743 50.000 0.00 0.00 0.00 1.52
90 91 0.611896 GGCCTGCCTTGCCTTCTAAA 60.612 55.000 0.00 0.00 45.70 1.85
92 93 2.677228 GGCCTGCCTTGCCTTCTA 59.323 61.111 0.00 0.00 45.70 2.10
98 99 1.304464 AGTTAAGGGCCTGCCTTGC 60.304 57.895 6.92 0.00 36.10 4.01
105 106 1.280421 CTCTCTTGCAGTTAAGGGCCT 59.720 52.381 0.00 0.00 0.00 5.19
106 107 1.279271 TCTCTCTTGCAGTTAAGGGCC 59.721 52.381 0.00 0.00 0.00 5.80
107 108 2.234908 TCTCTCTCTTGCAGTTAAGGGC 59.765 50.000 0.00 0.00 0.00 5.19
109 110 8.610896 CATATTTTCTCTCTCTTGCAGTTAAGG 58.389 37.037 0.00 0.00 0.00 2.69
111 112 8.321353 TCCATATTTTCTCTCTCTTGCAGTTAA 58.679 33.333 0.00 0.00 0.00 2.01
112 113 7.851228 TCCATATTTTCTCTCTCTTGCAGTTA 58.149 34.615 0.00 0.00 0.00 2.24
113 114 6.715280 TCCATATTTTCTCTCTCTTGCAGTT 58.285 36.000 0.00 0.00 0.00 3.16
114 115 6.155910 TCTCCATATTTTCTCTCTCTTGCAGT 59.844 38.462 0.00 0.00 0.00 4.40
116 117 6.550938 TCTCCATATTTTCTCTCTCTTGCA 57.449 37.500 0.00 0.00 0.00 4.08
120 121 9.781633 CATGATTTCTCCATATTTTCTCTCTCT 57.218 33.333 0.00 0.00 0.00 3.10
121 122 9.558396 ACATGATTTCTCCATATTTTCTCTCTC 57.442 33.333 0.00 0.00 0.00 3.20
123 124 8.782144 GGACATGATTTCTCCATATTTTCTCTC 58.218 37.037 0.00 0.00 0.00 3.20
124 125 7.723172 GGGACATGATTTCTCCATATTTTCTCT 59.277 37.037 0.00 0.00 0.00 3.10
125 126 7.040132 GGGGACATGATTTCTCCATATTTTCTC 60.040 40.741 0.00 0.00 33.24 2.87
126 127 6.779539 GGGGACATGATTTCTCCATATTTTCT 59.220 38.462 0.00 0.00 33.24 2.52
127 128 6.779539 AGGGGACATGATTTCTCCATATTTTC 59.220 38.462 0.00 0.00 35.85 2.29
128 129 6.552350 CAGGGGACATGATTTCTCCATATTTT 59.448 38.462 0.00 0.00 35.85 1.82
129 130 6.073314 CAGGGGACATGATTTCTCCATATTT 58.927 40.000 0.00 0.00 35.85 1.40
130 131 5.638133 CAGGGGACATGATTTCTCCATATT 58.362 41.667 0.00 0.00 35.85 1.28
132 133 3.181440 GCAGGGGACATGATTTCTCCATA 60.181 47.826 0.00 0.00 35.85 2.74
133 134 2.423947 GCAGGGGACATGATTTCTCCAT 60.424 50.000 0.00 0.00 35.85 3.41
134 135 1.064463 GCAGGGGACATGATTTCTCCA 60.064 52.381 0.00 0.00 35.85 3.86
135 136 1.064463 TGCAGGGGACATGATTTCTCC 60.064 52.381 0.00 0.00 33.17 3.71
136 137 2.295885 CTGCAGGGGACATGATTTCTC 58.704 52.381 5.57 0.00 0.00 2.87
137 138 1.684248 GCTGCAGGGGACATGATTTCT 60.684 52.381 17.12 0.00 0.00 2.52
138 139 0.743097 GCTGCAGGGGACATGATTTC 59.257 55.000 17.12 0.00 0.00 2.17
139 140 0.040058 TGCTGCAGGGGACATGATTT 59.960 50.000 17.12 0.00 0.00 2.17
140 141 0.395311 CTGCTGCAGGGGACATGATT 60.395 55.000 21.71 0.00 0.00 2.57
141 142 1.226542 CTGCTGCAGGGGACATGAT 59.773 57.895 21.71 0.00 0.00 2.45
151 152 0.249953 CATCTCTAGGCCTGCTGCAG 60.250 60.000 22.44 22.44 43.89 4.41
152 153 1.693152 CCATCTCTAGGCCTGCTGCA 61.693 60.000 17.99 0.88 43.89 4.41
153 154 1.071128 CCATCTCTAGGCCTGCTGC 59.929 63.158 17.99 0.00 40.16 5.25
154 155 1.071128 GCCATCTCTAGGCCTGCTG 59.929 63.158 17.99 5.65 46.50 4.41
155 156 3.560989 GCCATCTCTAGGCCTGCT 58.439 61.111 17.99 0.00 46.50 4.24
161 162 5.066593 GGATGTTTTTAGGCCATCTCTAGG 58.933 45.833 5.01 0.00 36.18 3.02
163 164 5.708736 TGGATGTTTTTAGGCCATCTCTA 57.291 39.130 5.01 0.00 36.18 2.43
164 165 4.591321 TGGATGTTTTTAGGCCATCTCT 57.409 40.909 5.01 0.00 36.18 3.10
165 166 5.185828 AGTTTGGATGTTTTTAGGCCATCTC 59.814 40.000 5.01 0.00 36.18 2.75
166 167 5.086621 AGTTTGGATGTTTTTAGGCCATCT 58.913 37.500 5.01 0.00 36.18 2.90
167 168 5.405935 AGTTTGGATGTTTTTAGGCCATC 57.594 39.130 5.01 0.00 35.37 3.51
168 169 5.186992 GGTAGTTTGGATGTTTTTAGGCCAT 59.813 40.000 5.01 0.00 0.00 4.40
169 170 4.525100 GGTAGTTTGGATGTTTTTAGGCCA 59.475 41.667 5.01 0.00 0.00 5.36
170 171 4.525100 TGGTAGTTTGGATGTTTTTAGGCC 59.475 41.667 0.00 0.00 0.00 5.19
171 172 5.466819 GTGGTAGTTTGGATGTTTTTAGGC 58.533 41.667 0.00 0.00 0.00 3.93
173 174 6.642707 TGGTGGTAGTTTGGATGTTTTTAG 57.357 37.500 0.00 0.00 0.00 1.85
174 175 7.604657 AATGGTGGTAGTTTGGATGTTTTTA 57.395 32.000 0.00 0.00 0.00 1.52
175 176 6.493189 AATGGTGGTAGTTTGGATGTTTTT 57.507 33.333 0.00 0.00 0.00 1.94
176 177 7.604657 TTAATGGTGGTAGTTTGGATGTTTT 57.395 32.000 0.00 0.00 0.00 2.43
177 178 7.604657 TTTAATGGTGGTAGTTTGGATGTTT 57.395 32.000 0.00 0.00 0.00 2.83
178 179 7.790782 ATTTAATGGTGGTAGTTTGGATGTT 57.209 32.000 0.00 0.00 0.00 2.71
179 180 8.113462 ACTATTTAATGGTGGTAGTTTGGATGT 58.887 33.333 0.00 0.00 0.00 3.06
181 182 9.623000 GTACTATTTAATGGTGGTAGTTTGGAT 57.377 33.333 4.18 0.00 0.00 3.41
182 183 8.048514 GGTACTATTTAATGGTGGTAGTTTGGA 58.951 37.037 4.18 0.00 0.00 3.53
183 184 7.830201 TGGTACTATTTAATGGTGGTAGTTTGG 59.170 37.037 4.18 0.00 0.00 3.28
185 186 9.810870 TTTGGTACTATTTAATGGTGGTAGTTT 57.189 29.630 4.18 0.00 0.00 2.66
211 212 1.269361 GGTGCGTTTCATCGGGTTTTT 60.269 47.619 0.00 0.00 0.00 1.94
212 213 0.312729 GGTGCGTTTCATCGGGTTTT 59.687 50.000 0.00 0.00 0.00 2.43
213 214 0.536460 AGGTGCGTTTCATCGGGTTT 60.536 50.000 0.00 0.00 0.00 3.27
214 215 0.536460 AAGGTGCGTTTCATCGGGTT 60.536 50.000 0.00 0.00 0.00 4.11
217 218 2.221055 GCTATAAGGTGCGTTTCATCGG 59.779 50.000 0.00 0.00 0.00 4.18
218 219 2.863740 TGCTATAAGGTGCGTTTCATCG 59.136 45.455 0.00 0.00 0.00 3.84
220 221 3.871594 GACTGCTATAAGGTGCGTTTCAT 59.128 43.478 0.00 0.00 0.00 2.57
221 222 3.056107 AGACTGCTATAAGGTGCGTTTCA 60.056 43.478 0.00 0.00 0.00 2.69
222 223 3.522553 AGACTGCTATAAGGTGCGTTTC 58.477 45.455 0.00 0.00 0.00 2.78
223 224 3.522553 GAGACTGCTATAAGGTGCGTTT 58.477 45.455 0.00 0.00 0.00 3.60
224 225 2.159085 GGAGACTGCTATAAGGTGCGTT 60.159 50.000 0.00 0.00 0.00 4.84
226 227 1.600663 CGGAGACTGCTATAAGGTGCG 60.601 57.143 0.00 0.00 0.00 5.34
227 228 1.409427 ACGGAGACTGCTATAAGGTGC 59.591 52.381 0.00 0.00 0.00 5.01
228 229 4.913335 TTACGGAGACTGCTATAAGGTG 57.087 45.455 0.00 0.00 0.00 4.00
229 230 4.099113 GGTTTACGGAGACTGCTATAAGGT 59.901 45.833 0.00 0.00 0.00 3.50
230 231 4.618965 GGTTTACGGAGACTGCTATAAGG 58.381 47.826 0.00 0.00 0.00 2.69
232 233 3.947196 TCGGTTTACGGAGACTGCTATAA 59.053 43.478 0.00 0.00 44.45 0.98
233 234 3.544684 TCGGTTTACGGAGACTGCTATA 58.455 45.455 0.00 0.00 44.45 1.31
234 235 2.358267 CTCGGTTTACGGAGACTGCTAT 59.642 50.000 10.86 0.00 43.44 2.97
235 236 1.741706 CTCGGTTTACGGAGACTGCTA 59.258 52.381 10.86 0.00 43.44 3.49
236 237 0.526662 CTCGGTTTACGGAGACTGCT 59.473 55.000 10.86 0.00 43.44 4.24
237 238 0.458025 CCTCGGTTTACGGAGACTGC 60.458 60.000 16.29 0.00 43.44 4.40
238 239 1.135460 GTCCTCGGTTTACGGAGACTG 60.135 57.143 16.29 0.00 43.44 3.51
239 240 1.172175 GTCCTCGGTTTACGGAGACT 58.828 55.000 16.29 0.00 43.44 3.24
240 241 1.172175 AGTCCTCGGTTTACGGAGAC 58.828 55.000 16.29 12.50 43.44 3.36
242 243 2.751806 AGTTAGTCCTCGGTTTACGGAG 59.248 50.000 9.70 9.70 44.45 4.63
243 244 2.749621 GAGTTAGTCCTCGGTTTACGGA 59.250 50.000 0.00 0.00 44.45 4.69
244 245 2.159324 GGAGTTAGTCCTCGGTTTACGG 60.159 54.545 0.00 0.00 42.99 4.02
245 246 3.142404 GGAGTTAGTCCTCGGTTTACG 57.858 52.381 0.00 0.00 42.99 3.18
256 257 5.967088 TGATGTTGAAGCTAGGAGTTAGTC 58.033 41.667 0.00 0.00 0.00 2.59
257 258 6.360370 TTGATGTTGAAGCTAGGAGTTAGT 57.640 37.500 0.00 0.00 0.00 2.24
259 260 6.530120 TGTTTGATGTTGAAGCTAGGAGTTA 58.470 36.000 0.00 0.00 0.00 2.24
260 261 5.376625 TGTTTGATGTTGAAGCTAGGAGTT 58.623 37.500 0.00 0.00 0.00 3.01
261 262 4.973168 TGTTTGATGTTGAAGCTAGGAGT 58.027 39.130 0.00 0.00 0.00 3.85
262 263 5.413833 ACATGTTTGATGTTGAAGCTAGGAG 59.586 40.000 0.00 0.00 0.00 3.69
263 264 5.316167 ACATGTTTGATGTTGAAGCTAGGA 58.684 37.500 0.00 0.00 0.00 2.94
264 265 5.392380 GGACATGTTTGATGTTGAAGCTAGG 60.392 44.000 0.00 0.00 31.52 3.02
265 266 5.181811 TGGACATGTTTGATGTTGAAGCTAG 59.818 40.000 0.00 0.00 31.52 3.42
266 267 5.048782 GTGGACATGTTTGATGTTGAAGCTA 60.049 40.000 0.00 0.00 31.52 3.32
268 269 3.983344 GTGGACATGTTTGATGTTGAAGC 59.017 43.478 0.00 0.00 31.52 3.86
270 271 4.278170 GGAGTGGACATGTTTGATGTTGAA 59.722 41.667 0.00 0.00 31.52 2.69
271 272 3.820467 GGAGTGGACATGTTTGATGTTGA 59.180 43.478 0.00 0.00 31.52 3.18
272 273 3.569277 TGGAGTGGACATGTTTGATGTTG 59.431 43.478 0.00 0.00 31.52 3.33
273 274 3.831323 TGGAGTGGACATGTTTGATGTT 58.169 40.909 0.00 0.00 31.52 2.71
275 276 4.703575 AGATTGGAGTGGACATGTTTGATG 59.296 41.667 0.00 0.00 0.00 3.07
277 278 4.074259 CAGATTGGAGTGGACATGTTTGA 58.926 43.478 0.00 0.00 0.00 2.69
278 279 3.366679 GCAGATTGGAGTGGACATGTTTG 60.367 47.826 0.00 0.00 0.00 2.93
279 280 2.821969 GCAGATTGGAGTGGACATGTTT 59.178 45.455 0.00 0.00 0.00 2.83
280 281 2.440409 GCAGATTGGAGTGGACATGTT 58.560 47.619 0.00 0.00 0.00 2.71
281 282 1.340405 GGCAGATTGGAGTGGACATGT 60.340 52.381 0.00 0.00 0.00 3.21
282 283 1.340308 TGGCAGATTGGAGTGGACATG 60.340 52.381 0.00 0.00 0.00 3.21
283 284 0.994247 TGGCAGATTGGAGTGGACAT 59.006 50.000 0.00 0.00 0.00 3.06
284 285 0.036732 GTGGCAGATTGGAGTGGACA 59.963 55.000 0.00 0.00 0.00 4.02
285 286 0.036732 TGTGGCAGATTGGAGTGGAC 59.963 55.000 0.00 0.00 0.00 4.02
286 287 0.770499 TTGTGGCAGATTGGAGTGGA 59.230 50.000 0.00 0.00 0.00 4.02
287 288 1.171308 CTTGTGGCAGATTGGAGTGG 58.829 55.000 0.00 0.00 0.00 4.00
288 289 0.524862 GCTTGTGGCAGATTGGAGTG 59.475 55.000 0.00 0.00 41.35 3.51
289 290 0.610232 GGCTTGTGGCAGATTGGAGT 60.610 55.000 0.00 0.00 44.01 3.85
290 291 0.323178 AGGCTTGTGGCAGATTGGAG 60.323 55.000 0.00 0.00 44.01 3.86
291 292 0.112995 AAGGCTTGTGGCAGATTGGA 59.887 50.000 0.00 0.00 44.01 3.53
294 295 2.097825 GATGAAGGCTTGTGGCAGATT 58.902 47.619 3.46 0.00 44.01 2.40
295 296 1.005097 TGATGAAGGCTTGTGGCAGAT 59.995 47.619 3.46 0.00 44.01 2.90
296 297 0.401356 TGATGAAGGCTTGTGGCAGA 59.599 50.000 3.46 0.00 44.01 4.26
297 298 1.471119 ATGATGAAGGCTTGTGGCAG 58.529 50.000 3.46 0.00 44.01 4.85
298 299 2.804986 TATGATGAAGGCTTGTGGCA 57.195 45.000 3.46 0.00 44.01 4.92
299 300 2.555757 GGATATGATGAAGGCTTGTGGC 59.444 50.000 3.46 0.00 40.90 5.01
300 301 3.819337 CTGGATATGATGAAGGCTTGTGG 59.181 47.826 3.46 0.00 0.00 4.17
301 302 4.458397 ACTGGATATGATGAAGGCTTGTG 58.542 43.478 3.46 0.00 0.00 3.33
302 303 4.785346 ACTGGATATGATGAAGGCTTGT 57.215 40.909 3.46 0.00 0.00 3.16
304 305 4.818546 CGAAACTGGATATGATGAAGGCTT 59.181 41.667 0.00 0.00 0.00 4.35
305 306 4.384056 CGAAACTGGATATGATGAAGGCT 58.616 43.478 0.00 0.00 0.00 4.58
306 307 3.499918 CCGAAACTGGATATGATGAAGGC 59.500 47.826 0.00 0.00 0.00 4.35
307 308 3.499918 GCCGAAACTGGATATGATGAAGG 59.500 47.826 0.00 0.00 0.00 3.46
309 310 3.130633 CGCCGAAACTGGATATGATGAA 58.869 45.455 0.00 0.00 0.00 2.57
310 311 2.754472 CGCCGAAACTGGATATGATGA 58.246 47.619 0.00 0.00 0.00 2.92
312 313 1.202639 TGCGCCGAAACTGGATATGAT 60.203 47.619 4.18 0.00 0.00 2.45
313 314 0.176910 TGCGCCGAAACTGGATATGA 59.823 50.000 4.18 0.00 0.00 2.15
316 317 0.107897 ATGTGCGCCGAAACTGGATA 60.108 50.000 4.18 0.00 0.00 2.59
317 318 0.107897 TATGTGCGCCGAAACTGGAT 60.108 50.000 4.18 0.00 0.00 3.41
318 319 0.320858 TTATGTGCGCCGAAACTGGA 60.321 50.000 4.18 0.00 0.00 3.86
319 320 0.519519 TTTATGTGCGCCGAAACTGG 59.480 50.000 4.18 0.00 0.00 4.00
322 323 0.791610 CCGTTTATGTGCGCCGAAAC 60.792 55.000 4.18 9.05 0.00 2.78
324 325 1.229315 AACCGTTTATGTGCGCCGAA 61.229 50.000 4.18 0.00 0.00 4.30
326 327 0.247379 GTAACCGTTTATGTGCGCCG 60.247 55.000 4.18 0.00 0.00 6.46
327 328 0.097499 GGTAACCGTTTATGTGCGCC 59.903 55.000 4.18 0.00 0.00 6.53
341 342 4.404640 AGCCAAGGAAAACTAAGGGTAAC 58.595 43.478 0.00 0.00 34.60 2.50
343 344 4.105057 TGAAGCCAAGGAAAACTAAGGGTA 59.895 41.667 0.00 0.00 35.09 3.69
344 345 3.117284 TGAAGCCAAGGAAAACTAAGGGT 60.117 43.478 0.00 0.00 36.97 4.34
346 347 8.519799 TTATATGAAGCCAAGGAAAACTAAGG 57.480 34.615 0.00 0.00 0.00 2.69
348 349 9.693739 TCATTATATGAAGCCAAGGAAAACTAA 57.306 29.630 0.00 0.00 36.11 2.24
349 350 9.693739 TTCATTATATGAAGCCAAGGAAAACTA 57.306 29.630 0.00 0.00 43.84 2.24
350 351 8.593945 TTCATTATATGAAGCCAAGGAAAACT 57.406 30.769 0.00 0.00 43.84 2.66
363 364 5.582269 GCCTATGAGCGCTTCATTATATGAA 59.418 40.000 21.71 2.47 44.14 2.57
364 365 5.111989 GCCTATGAGCGCTTCATTATATGA 58.888 41.667 21.71 7.33 44.14 2.15
365 366 4.272018 GGCCTATGAGCGCTTCATTATATG 59.728 45.833 21.71 10.59 44.14 1.78
366 367 4.446371 GGCCTATGAGCGCTTCATTATAT 58.554 43.478 21.71 8.11 44.14 0.86
367 368 3.676049 CGGCCTATGAGCGCTTCATTATA 60.676 47.826 21.71 11.39 44.14 0.98
368 369 2.704572 GGCCTATGAGCGCTTCATTAT 58.295 47.619 21.71 10.95 44.14 1.28
369 370 1.605457 CGGCCTATGAGCGCTTCATTA 60.605 52.381 21.71 8.08 44.14 1.90
372 373 2.106938 CGGCCTATGAGCGCTTCA 59.893 61.111 13.26 11.92 40.85 3.02
373 374 0.249322 TAACGGCCTATGAGCGCTTC 60.249 55.000 13.26 5.55 0.00 3.86
374 375 0.393077 ATAACGGCCTATGAGCGCTT 59.607 50.000 13.26 0.00 0.00 4.68
375 376 0.319900 CATAACGGCCTATGAGCGCT 60.320 55.000 11.27 11.27 31.94 5.92
376 377 0.319555 TCATAACGGCCTATGAGCGC 60.320 55.000 9.99 0.00 34.15 5.92
378 379 4.275936 ACAATTTCATAACGGCCTATGAGC 59.724 41.667 12.92 0.00 39.02 4.26
379 380 5.296780 ACACAATTTCATAACGGCCTATGAG 59.703 40.000 12.92 6.25 39.02 2.90
380 381 5.065859 CACACAATTTCATAACGGCCTATGA 59.934 40.000 9.99 9.99 36.68 2.15
381 382 5.163663 ACACACAATTTCATAACGGCCTATG 60.164 40.000 0.00 3.12 0.00 2.23
382 383 4.947388 ACACACAATTTCATAACGGCCTAT 59.053 37.500 0.00 0.00 0.00 2.57
383 384 4.155099 CACACACAATTTCATAACGGCCTA 59.845 41.667 0.00 0.00 0.00 3.93
384 385 3.057596 CACACACAATTTCATAACGGCCT 60.058 43.478 0.00 0.00 0.00 5.19
385 386 3.057876 TCACACACAATTTCATAACGGCC 60.058 43.478 0.00 0.00 0.00 6.13
386 387 4.153958 TCACACACAATTTCATAACGGC 57.846 40.909 0.00 0.00 0.00 5.68
389 390 6.738200 CGTCTCATCACACACAATTTCATAAC 59.262 38.462 0.00 0.00 0.00 1.89
390 391 6.426633 ACGTCTCATCACACACAATTTCATAA 59.573 34.615 0.00 0.00 0.00 1.90
391 392 5.931724 ACGTCTCATCACACACAATTTCATA 59.068 36.000 0.00 0.00 0.00 2.15
392 393 4.756642 ACGTCTCATCACACACAATTTCAT 59.243 37.500 0.00 0.00 0.00 2.57
393 394 4.126437 ACGTCTCATCACACACAATTTCA 58.874 39.130 0.00 0.00 0.00 2.69
394 395 4.732285 ACGTCTCATCACACACAATTTC 57.268 40.909 0.00 0.00 0.00 2.17
395 396 4.574421 TGAACGTCTCATCACACACAATTT 59.426 37.500 0.00 0.00 0.00 1.82
396 397 4.126437 TGAACGTCTCATCACACACAATT 58.874 39.130 0.00 0.00 0.00 2.32
397 398 3.727726 TGAACGTCTCATCACACACAAT 58.272 40.909 0.00 0.00 0.00 2.71
398 399 3.123050 CTGAACGTCTCATCACACACAA 58.877 45.455 0.00 0.00 32.14 3.33
399 400 2.545742 CCTGAACGTCTCATCACACACA 60.546 50.000 0.00 0.00 32.14 3.72
400 401 2.061773 CCTGAACGTCTCATCACACAC 58.938 52.381 0.00 0.00 32.14 3.82
401 402 1.686587 ACCTGAACGTCTCATCACACA 59.313 47.619 0.00 0.00 32.14 3.72
403 404 2.888414 TGTACCTGAACGTCTCATCACA 59.112 45.455 0.00 0.00 32.14 3.58
405 406 3.190744 GTCTGTACCTGAACGTCTCATCA 59.809 47.826 0.00 0.00 32.14 3.07
406 407 3.728268 CGTCTGTACCTGAACGTCTCATC 60.728 52.174 0.00 0.00 32.14 2.92
407 408 2.161808 CGTCTGTACCTGAACGTCTCAT 59.838 50.000 0.00 0.00 32.14 2.90
410 411 0.240411 GCGTCTGTACCTGAACGTCT 59.760 55.000 0.00 0.00 0.00 4.18
411 412 0.039798 TGCGTCTGTACCTGAACGTC 60.040 55.000 0.00 0.00 0.00 4.34
412 413 0.039437 CTGCGTCTGTACCTGAACGT 60.039 55.000 7.81 0.00 0.00 3.99
414 415 2.656560 ATCTGCGTCTGTACCTGAAC 57.343 50.000 0.00 0.00 0.00 3.18
415 416 2.930887 GCAATCTGCGTCTGTACCTGAA 60.931 50.000 0.00 0.00 31.71 3.02
416 417 1.404181 GCAATCTGCGTCTGTACCTGA 60.404 52.381 0.00 0.00 31.71 3.86
417 418 1.002366 GCAATCTGCGTCTGTACCTG 58.998 55.000 0.00 0.00 31.71 4.00
418 419 3.442996 GCAATCTGCGTCTGTACCT 57.557 52.632 0.00 0.00 31.71 3.08
428 429 6.707161 AGAATAATCTCTCAAGAGCAATCTGC 59.293 38.462 1.99 0.00 45.46 4.26
442 443 7.673926 GAGATTACCTCAGGGAGAATAATCTCT 59.326 40.741 27.63 15.17 45.71 3.10
443 444 7.836842 GAGATTACCTCAGGGAGAATAATCTC 58.163 42.308 24.83 24.83 44.77 2.75
444 445 7.543755 AGAGATTACCTCAGGGAGAATAATCT 58.456 38.462 20.65 20.65 42.94 2.40
446 447 9.487442 GATAGAGATTACCTCAGGGAGAATAAT 57.513 37.037 0.00 0.00 44.40 1.28
447 448 8.683445 AGATAGAGATTACCTCAGGGAGAATAA 58.317 37.037 0.00 0.00 44.40 1.40
448 449 8.238365 AGATAGAGATTACCTCAGGGAGAATA 57.762 38.462 0.00 0.00 44.40 1.75
449 450 7.114849 AGATAGAGATTACCTCAGGGAGAAT 57.885 40.000 0.00 0.00 44.40 2.40
450 451 6.538209 AGATAGAGATTACCTCAGGGAGAA 57.462 41.667 0.00 0.00 44.40 2.87
451 452 6.334237 AGAAGATAGAGATTACCTCAGGGAGA 59.666 42.308 0.00 0.00 44.40 3.71
453 454 6.538209 AGAAGATAGAGATTACCTCAGGGA 57.462 41.667 0.00 0.00 44.40 4.20
455 456 9.753674 ATAGAAGAAGATAGAGATTACCTCAGG 57.246 37.037 0.00 0.00 44.40 3.86
496 497 6.855763 AATCCATTCATCACCAGCTAAAAA 57.144 33.333 0.00 0.00 0.00 1.94
497 498 6.211184 ACAAATCCATTCATCACCAGCTAAAA 59.789 34.615 0.00 0.00 0.00 1.52
498 499 5.716228 ACAAATCCATTCATCACCAGCTAAA 59.284 36.000 0.00 0.00 0.00 1.85
499 500 5.263599 ACAAATCCATTCATCACCAGCTAA 58.736 37.500 0.00 0.00 0.00 3.09
500 501 4.858850 ACAAATCCATTCATCACCAGCTA 58.141 39.130 0.00 0.00 0.00 3.32
501 502 3.705051 ACAAATCCATTCATCACCAGCT 58.295 40.909 0.00 0.00 0.00 4.24
502 503 4.460948 AACAAATCCATTCATCACCAGC 57.539 40.909 0.00 0.00 0.00 4.85
503 504 7.156673 AGAAAAACAAATCCATTCATCACCAG 58.843 34.615 0.00 0.00 0.00 4.00
504 505 7.065120 AGAAAAACAAATCCATTCATCACCA 57.935 32.000 0.00 0.00 0.00 4.17
506 507 9.264719 AGAAAGAAAAACAAATCCATTCATCAC 57.735 29.630 0.00 0.00 0.00 3.06
507 508 9.835389 AAGAAAGAAAAACAAATCCATTCATCA 57.165 25.926 0.00 0.00 0.00 3.07
510 511 9.447157 ACAAAGAAAGAAAAACAAATCCATTCA 57.553 25.926 0.00 0.00 0.00 2.57
542 543 9.705103 TCTCCATTTAGAAATCCATTCATCTTT 57.295 29.630 0.00 0.00 40.72 2.52
543 544 9.705103 TTCTCCATTTAGAAATCCATTCATCTT 57.295 29.630 0.00 0.00 40.72 2.40
544 545 9.352191 CTTCTCCATTTAGAAATCCATTCATCT 57.648 33.333 0.00 0.00 40.72 2.90
545 546 9.347240 TCTTCTCCATTTAGAAATCCATTCATC 57.653 33.333 0.00 0.00 40.72 2.92
546 547 9.352191 CTCTTCTCCATTTAGAAATCCATTCAT 57.648 33.333 0.00 0.00 40.72 2.57
547 548 7.776969 CCTCTTCTCCATTTAGAAATCCATTCA 59.223 37.037 0.00 0.00 40.72 2.57
548 549 7.995488 TCCTCTTCTCCATTTAGAAATCCATTC 59.005 37.037 0.00 0.00 35.14 2.67
549 550 7.876371 TCCTCTTCTCCATTTAGAAATCCATT 58.124 34.615 0.00 0.00 35.14 3.16
550 551 7.457380 TCCTCTTCTCCATTTAGAAATCCAT 57.543 36.000 0.00 0.00 35.14 3.41
551 552 6.891306 TCCTCTTCTCCATTTAGAAATCCA 57.109 37.500 0.00 0.00 35.14 3.41
552 553 7.512992 TCATCCTCTTCTCCATTTAGAAATCC 58.487 38.462 0.00 0.00 35.14 3.01
553 554 9.001542 CATCATCCTCTTCTCCATTTAGAAATC 57.998 37.037 0.00 0.00 35.14 2.17
554 555 8.501070 ACATCATCCTCTTCTCCATTTAGAAAT 58.499 33.333 0.00 0.00 35.14 2.17
555 556 7.865820 ACATCATCCTCTTCTCCATTTAGAAA 58.134 34.615 0.00 0.00 35.14 2.52
556 557 7.443302 ACATCATCCTCTTCTCCATTTAGAA 57.557 36.000 0.00 0.00 34.39 2.10
557 558 7.443302 AACATCATCCTCTTCTCCATTTAGA 57.557 36.000 0.00 0.00 0.00 2.10
558 559 7.992033 AGAAACATCATCCTCTTCTCCATTTAG 59.008 37.037 0.00 0.00 0.00 1.85
559 560 7.865820 AGAAACATCATCCTCTTCTCCATTTA 58.134 34.615 0.00 0.00 0.00 1.40
560 561 6.729428 AGAAACATCATCCTCTTCTCCATTT 58.271 36.000 0.00 0.00 0.00 2.32
561 562 6.324601 AGAAACATCATCCTCTTCTCCATT 57.675 37.500 0.00 0.00 0.00 3.16
564 565 8.567285 TTTTTAGAAACATCATCCTCTTCTCC 57.433 34.615 0.00 0.00 0.00 3.71
589 590 2.843730 GGTTGGGCCCATTATCCTTTTT 59.156 45.455 29.23 0.00 0.00 1.94
590 591 2.477245 GGTTGGGCCCATTATCCTTTT 58.523 47.619 29.23 0.00 0.00 2.27
591 592 1.687996 CGGTTGGGCCCATTATCCTTT 60.688 52.381 29.23 0.00 0.00 3.11
592 593 0.106217 CGGTTGGGCCCATTATCCTT 60.106 55.000 29.23 0.00 0.00 3.36
593 594 1.536676 CGGTTGGGCCCATTATCCT 59.463 57.895 29.23 0.00 0.00 3.24
594 595 2.200337 GCGGTTGGGCCCATTATCC 61.200 63.158 29.23 23.02 0.00 2.59
595 596 3.443588 GCGGTTGGGCCCATTATC 58.556 61.111 29.23 11.71 0.00 1.75
603 604 2.048316 CATTTGTGGCGGTTGGGC 60.048 61.111 0.00 0.00 42.69 5.36
606 607 1.586028 CCTCCATTTGTGGCGGTTG 59.414 57.895 0.00 0.00 0.00 3.77
608 609 2.035626 CCCTCCATTTGTGGCGGT 59.964 61.111 3.09 0.00 32.07 5.68
609 610 3.451894 GCCCTCCATTTGTGGCGG 61.452 66.667 0.00 0.00 33.59 6.13
610 611 3.451894 GGCCCTCCATTTGTGGCG 61.452 66.667 0.00 0.00 44.96 5.69
611 612 2.037847 AGGCCCTCCATTTGTGGC 59.962 61.111 0.00 0.00 43.26 5.01
612 613 4.344237 GAGGCCCTCCATTTGTGG 57.656 61.111 0.00 0.00 33.74 4.17
635 636 3.499737 GCCCATGTTCAGCGTCGG 61.500 66.667 0.00 0.00 0.00 4.79
657 658 0.181350 GCTGGCCTTGCTGTATAGGT 59.819 55.000 3.32 0.00 33.91 3.08
661 662 2.276740 GGGCTGGCCTTGCTGTAT 59.723 61.111 13.80 0.00 36.10 2.29
688 689 3.771160 CGCGTTGGGCCCTAGAGT 61.771 66.667 25.70 0.00 38.94 3.24
692 693 3.193469 TTTTCCGCGTTGGGCCCTA 62.193 57.895 25.70 14.07 38.94 3.53
706 707 3.181490 GCCCCTGGATATTTCGTGTTTTC 60.181 47.826 0.00 0.00 0.00 2.29
718 719 3.087253 CACACGGGCCCCTGGATA 61.087 66.667 22.89 0.00 0.00 2.59
734 735 6.498651 TGGATTATAGGGTTTTCCTTTTTGCA 59.501 34.615 0.00 0.00 45.47 4.08
968 3941 1.836802 ACCAGCCACCAAACAAACAAT 59.163 42.857 0.00 0.00 0.00 2.71
973 3946 0.616111 ACCAACCAGCCACCAAACAA 60.616 50.000 0.00 0.00 0.00 2.83
974 3947 0.616111 AACCAACCAGCCACCAAACA 60.616 50.000 0.00 0.00 0.00 2.83
975 3948 0.104120 GAACCAACCAGCCACCAAAC 59.896 55.000 0.00 0.00 0.00 2.93
976 3949 1.045911 GGAACCAACCAGCCACCAAA 61.046 55.000 0.00 0.00 0.00 3.28
977 3950 1.456705 GGAACCAACCAGCCACCAA 60.457 57.895 0.00 0.00 0.00 3.67
978 3951 2.197324 GGAACCAACCAGCCACCA 59.803 61.111 0.00 0.00 0.00 4.17
979 3952 2.983592 CGGAACCAACCAGCCACC 60.984 66.667 0.00 0.00 0.00 4.61
980 3953 3.670377 GCGGAACCAACCAGCCAC 61.670 66.667 0.00 0.00 0.00 5.01
981 3954 4.196778 TGCGGAACCAACCAGCCA 62.197 61.111 0.00 0.00 0.00 4.75
982 3955 3.365265 CTGCGGAACCAACCAGCC 61.365 66.667 0.00 0.00 0.00 4.85
983 3956 1.675641 ATCTGCGGAACCAACCAGC 60.676 57.895 0.00 0.00 0.00 4.85
984 3957 0.321564 TCATCTGCGGAACCAACCAG 60.322 55.000 0.00 0.00 0.00 4.00
985 3958 0.109532 TTCATCTGCGGAACCAACCA 59.890 50.000 0.00 0.00 0.00 3.67
986 3959 0.521735 GTTCATCTGCGGAACCAACC 59.478 55.000 0.00 0.00 38.92 3.77
987 3960 1.234821 TGTTCATCTGCGGAACCAAC 58.765 50.000 0.00 3.53 43.05 3.77
1091 4087 4.794439 CACAGATCGGTCGCGCCA 62.794 66.667 17.57 7.13 36.97 5.69
1093 4089 3.982372 TTCCACAGATCGGTCGCGC 62.982 63.158 0.00 0.00 0.00 6.86
1094 4090 1.011968 TTTTCCACAGATCGGTCGCG 61.012 55.000 0.00 0.00 0.00 5.87
1335 4353 1.212616 GCAGCGAGCATACAACTAGG 58.787 55.000 0.00 0.00 44.79 3.02
1370 4388 1.377725 CCCATCTGCACCTCCACAC 60.378 63.158 0.00 0.00 0.00 3.82
1407 4425 1.128136 CTTGCACTGCATCGACAGAAG 59.872 52.381 4.10 1.76 40.25 2.85
1540 5064 6.039047 GCGATGCATCCATAAATCCAATCTAT 59.961 38.462 20.87 0.00 0.00 1.98
1653 6756 6.321181 GGGTGCATGGAGAGATGTTATAAAAA 59.679 38.462 0.00 0.00 0.00 1.94
1654 6757 5.827797 GGGTGCATGGAGAGATGTTATAAAA 59.172 40.000 0.00 0.00 0.00 1.52
1670 6775 2.632377 ACAAGACTAATCGGGTGCATG 58.368 47.619 0.00 0.00 0.00 4.06
1695 6801 4.813027 CAAACTAAAGTGCATGGCTTCAT 58.187 39.130 0.00 0.00 0.00 2.57
1747 6911 7.613801 AGCAACATATTATTAGGGTGAACACAA 59.386 33.333 7.25 0.00 28.06 3.33
1761 6984 8.917088 AGTAATTCAAAGGCAGCAACATATTAT 58.083 29.630 0.00 0.00 0.00 1.28
1762 6985 8.190122 CAGTAATTCAAAGGCAGCAACATATTA 58.810 33.333 0.00 0.00 0.00 0.98
1763 6986 7.037438 CAGTAATTCAAAGGCAGCAACATATT 58.963 34.615 0.00 0.00 0.00 1.28
1772 6995 6.376978 CAGAGAAACAGTAATTCAAAGGCAG 58.623 40.000 0.00 0.00 0.00 4.85
1909 7132 4.765856 TGTAACTAGGTCAGAAGGAGTGTC 59.234 45.833 0.00 0.00 0.00 3.67
1910 7133 4.523558 GTGTAACTAGGTCAGAAGGAGTGT 59.476 45.833 0.00 0.00 0.00 3.55
1911 7134 4.082136 GGTGTAACTAGGTCAGAAGGAGTG 60.082 50.000 0.00 0.00 36.74 3.51
1924 7147 9.886132 AAACTAGTAATTGGATGGTGTAACTAG 57.114 33.333 0.00 0.00 40.48 2.57
1995 7218 4.584325 AGTCAAATACTTGAAGCCAAAGCA 59.416 37.500 0.00 0.00 43.18 3.91
2023 7246 9.672673 GCATACCCACTCTGACATATAATAAAT 57.327 33.333 0.00 0.00 0.00 1.40
2156 7381 9.042008 GTGAGTCTCTCAACAAGTAATAAAACA 57.958 33.333 0.65 0.00 42.46 2.83
2166 7391 5.636965 CAGGTAATGTGAGTCTCTCAACAAG 59.363 44.000 8.59 0.00 42.46 3.16
2175 7400 2.639839 AGGCAACAGGTAATGTGAGTCT 59.360 45.455 0.00 0.00 43.00 3.24
2192 7417 3.258872 AGAATGCAGCAACATAAAAGGCA 59.741 39.130 0.00 0.00 0.00 4.75
2193 7418 3.853475 AGAATGCAGCAACATAAAAGGC 58.147 40.909 0.00 0.00 0.00 4.35
2194 7419 6.308766 GTGTAAGAATGCAGCAACATAAAAGG 59.691 38.462 0.00 0.00 0.00 3.11
2195 7420 6.308766 GGTGTAAGAATGCAGCAACATAAAAG 59.691 38.462 0.00 0.00 39.17 2.27
2196 7421 6.155827 GGTGTAAGAATGCAGCAACATAAAA 58.844 36.000 0.00 0.00 39.17 1.52
2200 7425 3.156293 TGGTGTAAGAATGCAGCAACAT 58.844 40.909 0.00 0.00 44.81 2.71
2254 7521 0.875059 AAAACTAGCAGCCGACTTGC 59.125 50.000 0.00 0.00 41.83 4.01
2282 7549 7.721399 AGAATGACTATTAATCACCCAATGACC 59.279 37.037 0.00 0.00 41.24 4.02
2385 7682 4.455877 ACTGGTGCTTTCATAAACTAGTGC 59.544 41.667 0.00 0.00 33.68 4.40
2408 7705 9.474313 AACAAAGAGGCAGAATTTATAACCATA 57.526 29.630 0.00 0.00 0.00 2.74
2415 7712 5.420104 CCTGGAACAAAGAGGCAGAATTTAT 59.580 40.000 0.00 0.00 38.70 1.40
2428 7725 0.178992 TGTCAGGGCCTGGAACAAAG 60.179 55.000 32.23 5.22 38.70 2.77
2603 7900 1.622607 TTGGTGGGGCGGAGTCTATG 61.623 60.000 0.00 0.00 0.00 2.23
2618 7919 2.667473 AGTAACGCTTCGCTATTGGT 57.333 45.000 0.00 0.00 0.00 3.67
2632 7933 6.403636 CCACATAGCAATTCAGGTCAAGTAAC 60.404 42.308 0.00 0.00 0.00 2.50
2643 7944 3.966979 ACCATGACCACATAGCAATTCA 58.033 40.909 0.00 0.00 35.09 2.57
2647 7948 4.406456 AGAAAACCATGACCACATAGCAA 58.594 39.130 0.00 0.00 35.09 3.91
2653 7954 4.000325 CGTCATAGAAAACCATGACCACA 59.000 43.478 8.64 0.00 45.36 4.17
2826 8131 7.402054 TCAGGTATATTGTGAACCAATCAACT 58.598 34.615 0.00 0.00 42.81 3.16
3022 8540 1.891919 GCGAGTGAACCAACCAGCA 60.892 57.895 0.00 0.00 0.00 4.41
3120 8642 8.755696 TGGTAATGCAACTTTTCATCAATAAC 57.244 30.769 0.00 0.00 0.00 1.89
3290 8851 5.339282 GGCCAGGAAGAAATATATAGGGACC 60.339 48.000 0.00 0.00 0.00 4.46
3342 8903 5.021033 AGAATTCGAGATCATGCTCACTT 57.979 39.130 0.00 0.00 34.56 3.16
3366 8927 8.410141 ACCTAGATTTTCAGACTAGATTTCGAG 58.590 37.037 0.00 0.00 36.65 4.04
3367 8928 8.294954 ACCTAGATTTTCAGACTAGATTTCGA 57.705 34.615 0.00 0.00 36.65 3.71
3372 8933 7.484975 CAACGACCTAGATTTTCAGACTAGAT 58.515 38.462 0.00 0.00 36.65 1.98
3373 8934 6.625300 GCAACGACCTAGATTTTCAGACTAGA 60.625 42.308 0.00 0.00 36.65 2.43
3374 8935 5.517054 GCAACGACCTAGATTTTCAGACTAG 59.483 44.000 0.00 0.00 35.00 2.57
3375 8936 5.185249 AGCAACGACCTAGATTTTCAGACTA 59.815 40.000 0.00 0.00 0.00 2.59
3376 8937 4.021016 AGCAACGACCTAGATTTTCAGACT 60.021 41.667 0.00 0.00 0.00 3.24
3377 8938 4.246458 AGCAACGACCTAGATTTTCAGAC 58.754 43.478 0.00 0.00 0.00 3.51
3444 9017 3.773119 GGGATGAGGTCCTAAGTTGTACA 59.227 47.826 0.00 0.00 46.91 2.90
3446 9019 4.287552 GAGGGATGAGGTCCTAAGTTGTA 58.712 47.826 0.00 0.00 46.91 2.41
3447 9020 3.108376 GAGGGATGAGGTCCTAAGTTGT 58.892 50.000 0.00 0.00 46.91 3.32
3448 9021 2.101582 CGAGGGATGAGGTCCTAAGTTG 59.898 54.545 0.00 0.00 46.91 3.16
3458 9031 2.105477 ACAATCAATCCGAGGGATGAGG 59.895 50.000 0.00 0.00 42.27 3.86
3481 9054 6.270815 TCAGTGTTAACAGTAGTGACAGAAC 58.729 40.000 15.48 3.61 0.00 3.01
3485 9058 4.341235 AGCTCAGTGTTAACAGTAGTGACA 59.659 41.667 15.48 0.00 0.00 3.58
3522 9095 3.273434 GTCAGCTGTAATGGCAAGATGA 58.727 45.455 14.67 0.98 0.00 2.92
3523 9096 2.031314 CGTCAGCTGTAATGGCAAGATG 59.969 50.000 14.67 0.00 0.00 2.90
3524 9097 2.283298 CGTCAGCTGTAATGGCAAGAT 58.717 47.619 14.67 0.00 0.00 2.40
3525 9098 1.675714 CCGTCAGCTGTAATGGCAAGA 60.676 52.381 14.67 0.00 0.00 3.02
3528 9125 1.745115 GCCGTCAGCTGTAATGGCA 60.745 57.895 26.11 0.00 42.03 4.92
3551 9148 3.096489 TGTTGGCAAGATGAAAACAGC 57.904 42.857 0.00 0.00 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.