Multiple sequence alignment - TraesCS4A01G331500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G331500 chr4A 100.000 2787 0 0 1 2787 616230877 616228091 0.000000e+00 5147
1 TraesCS4A01G331500 chr4A 96.552 1856 55 2 819 2674 616297940 616299786 0.000000e+00 3064
2 TraesCS4A01G331500 chr4A 93.861 1857 105 7 822 2674 616212293 616210442 0.000000e+00 2789
3 TraesCS4A01G331500 chr4A 89.698 961 83 6 819 1777 616315764 616316710 0.000000e+00 1212
4 TraesCS4A01G331500 chr4A 78.615 491 94 9 992 1478 616896825 616896342 5.790000e-82 315
5 TraesCS4A01G331500 chr4A 77.739 566 53 43 3 531 616313332 616313861 2.110000e-71 279
6 TraesCS4A01G331500 chr4A 84.362 243 29 5 297 539 670383077 670383310 2.160000e-56 230
7 TraesCS4A01G331500 chr4A 98.361 122 1 1 2666 2787 617324453 617324333 2.170000e-51 213
8 TraesCS4A01G331500 chr4A 94.776 134 4 3 2657 2787 409960360 409960227 3.640000e-49 206
9 TraesCS4A01G331500 chr4A 89.344 122 8 4 598 717 616213254 616213136 6.220000e-32 148
10 TraesCS4A01G331500 chr4A 100.000 68 0 0 688 755 616230149 616230082 2.910000e-25 126
11 TraesCS4A01G331500 chr4A 100.000 68 0 0 729 796 616230190 616230123 2.910000e-25 126
12 TraesCS4A01G331500 chr5D 95.202 1855 78 5 822 2674 552033232 552031387 0.000000e+00 2922
13 TraesCS4A01G331500 chr5D 90.017 1743 141 13 822 2560 551988762 551987049 0.000000e+00 2224
14 TraesCS4A01G331500 chr5D 88.344 326 20 9 231 541 552036617 552036295 2.620000e-100 375
15 TraesCS4A01G331500 chr5D 78.810 538 99 12 992 1521 551058312 551058842 5.710000e-92 348
16 TraesCS4A01G331500 chr5D 81.922 437 40 24 198 608 551990831 551990408 1.600000e-87 333
17 TraesCS4A01G331500 chr5D 77.818 550 109 11 979 1523 543503086 543502545 7.440000e-86 327
18 TraesCS4A01G331500 chr5D 84.444 135 16 2 4 135 551991061 551990929 8.100000e-26 128
19 TraesCS4A01G331500 chr5B 94.681 1692 78 6 819 2506 699950448 699952131 0.000000e+00 2615
20 TraesCS4A01G331500 chr5B 90.876 833 73 3 822 1653 700229152 700228322 0.000000e+00 1114
21 TraesCS4A01G331500 chr5B 87.380 626 67 9 1944 2560 700228004 700227382 0.000000e+00 708
22 TraesCS4A01G331500 chr5B 86.432 398 32 14 160 541 700231239 700230848 1.540000e-112 416
23 TraesCS4A01G331500 chr5B 86.174 311 38 5 1580 1888 700228325 700228018 5.750000e-87 331
24 TraesCS4A01G331500 chr5B 82.203 354 38 17 198 539 700216976 700216636 5.880000e-72 281
25 TraesCS4A01G331500 chr5B 80.241 415 39 30 215 608 700221639 700221247 3.540000e-69 272
26 TraesCS4A01G331500 chr5B 90.526 95 6 1 450 541 699949382 699949476 3.770000e-24 122
27 TraesCS4A01G331500 chr2D 82.683 589 46 14 3 541 420720174 420719592 3.250000e-129 472
28 TraesCS4A01G331500 chr7D 77.281 537 101 19 975 1497 22672773 22673302 2.100000e-76 296
29 TraesCS4A01G331500 chr1A 100.000 118 0 0 2670 2787 352992114 352991997 4.670000e-53 219
30 TraesCS4A01G331500 chr1A 97.600 125 0 3 2664 2787 573378707 573378585 7.820000e-51 211
31 TraesCS4A01G331500 chr2A 96.875 128 2 2 2660 2787 700385331 700385206 2.170000e-51 213
32 TraesCS4A01G331500 chr2A 97.561 123 2 1 2666 2787 318209084 318208962 2.810000e-50 209
33 TraesCS4A01G331500 chr3A 100.000 114 0 0 2674 2787 366837140 366837027 7.820000e-51 211
34 TraesCS4A01G331500 chr3A 95.420 131 4 1 2659 2787 53760120 53760250 1.010000e-49 207
35 TraesCS4A01G331500 chr4B 92.806 139 6 4 2650 2787 558842389 558842254 6.090000e-47 198
36 TraesCS4A01G331500 chr6B 87.179 156 19 1 384 539 19846479 19846325 2.850000e-40 176
37 TraesCS4A01G331500 chr6B 87.912 91 9 1 16 106 19861424 19861336 3.800000e-19 106
38 TraesCS4A01G331500 chr6B 90.000 80 8 0 27 106 672450096 672450017 1.370000e-18 104


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G331500 chr4A 616228091 616230877 2786 True 1799.666667 5147 100.0000 1 2787 3 chr4A.!!$R5 2786
1 TraesCS4A01G331500 chr4A 616297940 616299786 1846 False 3064.000000 3064 96.5520 819 2674 1 chr4A.!!$F1 1855
2 TraesCS4A01G331500 chr4A 616210442 616213254 2812 True 1468.500000 2789 91.6025 598 2674 2 chr4A.!!$R4 2076
3 TraesCS4A01G331500 chr4A 616313332 616316710 3378 False 745.500000 1212 83.7185 3 1777 2 chr4A.!!$F3 1774
4 TraesCS4A01G331500 chr5D 552031387 552036617 5230 True 1648.500000 2922 91.7730 231 2674 2 chr5D.!!$R3 2443
5 TraesCS4A01G331500 chr5D 551987049 551991061 4012 True 895.000000 2224 85.4610 4 2560 3 chr5D.!!$R2 2556
6 TraesCS4A01G331500 chr5D 551058312 551058842 530 False 348.000000 348 78.8100 992 1521 1 chr5D.!!$F1 529
7 TraesCS4A01G331500 chr5D 543502545 543503086 541 True 327.000000 327 77.8180 979 1523 1 chr5D.!!$R1 544
8 TraesCS4A01G331500 chr5B 699949382 699952131 2749 False 1368.500000 2615 92.6035 450 2506 2 chr5B.!!$F1 2056
9 TraesCS4A01G331500 chr5B 700227382 700231239 3857 True 642.250000 1114 87.7155 160 2560 4 chr5B.!!$R3 2400
10 TraesCS4A01G331500 chr2D 420719592 420720174 582 True 472.000000 472 82.6830 3 541 1 chr2D.!!$R1 538
11 TraesCS4A01G331500 chr7D 22672773 22673302 529 False 296.000000 296 77.2810 975 1497 1 chr7D.!!$F1 522

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
106 116 0.034186 TGGCTGCCCCTTGACTATTG 60.034 55.0 17.53 0.0 0.0 1.90 F
867 5547 0.036732 TGGGCCTTGACATGACAGAC 59.963 55.0 4.53 0.0 0.0 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1107 5790 1.477700 CCGGACAATGGTGCATCAATT 59.522 47.619 2.42 0.0 34.61 2.32 R
2730 7525 0.034896 TTCTGCTCCTCGTTGGGTTC 59.965 55.000 0.00 0.0 36.20 3.62 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 34 0.654472 GACTGTCGCAGCAAAACACG 60.654 55.000 6.74 0.00 34.37 4.49
32 35 2.005537 CTGTCGCAGCAAAACACGC 61.006 57.895 0.00 0.00 0.00 5.34
33 36 2.725815 GTCGCAGCAAAACACGCC 60.726 61.111 0.00 0.00 0.00 5.68
43 46 0.179140 AAAACACGCCAGCAACAGTG 60.179 50.000 0.00 0.00 40.17 3.66
50 53 1.533625 GCCAGCAACAGTGTTATGGA 58.466 50.000 30.13 0.00 30.72 3.41
103 106 0.255890 GAATGGCTGCCCCTTGACTA 59.744 55.000 17.53 0.00 0.00 2.59
106 116 0.034186 TGGCTGCCCCTTGACTATTG 60.034 55.000 17.53 0.00 0.00 1.90
114 124 5.027460 TGCCCCTTGACTATTGTAGACTTA 58.973 41.667 0.00 0.00 0.00 2.24
151 183 0.456221 AGTACGGAGATGGCGTTGAG 59.544 55.000 0.00 0.00 0.00 3.02
155 187 0.389817 CGGAGATGGCGTTGAGTTCA 60.390 55.000 0.00 0.00 0.00 3.18
156 188 1.740380 CGGAGATGGCGTTGAGTTCAT 60.740 52.381 0.00 0.00 0.00 2.57
157 189 1.667724 GGAGATGGCGTTGAGTTCATG 59.332 52.381 0.00 0.00 0.00 3.07
158 190 1.063174 GAGATGGCGTTGAGTTCATGC 59.937 52.381 0.00 0.00 0.00 4.06
163 195 0.166814 GCGTTGAGTTCATGCCACTC 59.833 55.000 14.81 14.81 41.08 3.51
233 310 7.905604 TGTACTATCAGTTCCAATTTCACAG 57.094 36.000 0.00 0.00 0.00 3.66
254 331 2.224793 GCCTGAACAAAACCTAGTCCCT 60.225 50.000 0.00 0.00 0.00 4.20
256 333 3.326747 CTGAACAAAACCTAGTCCCTCG 58.673 50.000 0.00 0.00 0.00 4.63
282 371 1.202806 TGAATCCATGAATCCCTCGCC 60.203 52.381 0.00 0.00 0.00 5.54
337 469 0.614979 TCCACCACCTAGAGCAGTCC 60.615 60.000 0.00 0.00 0.00 3.85
354 489 2.656069 CCGGGAGAGCGAAAGGGAA 61.656 63.158 0.00 0.00 0.00 3.97
365 500 0.784495 GAAAGGGAAGGAAGGGGGTT 59.216 55.000 0.00 0.00 0.00 4.11
549 703 4.341783 GCTGGGTGGTGCTCTGCT 62.342 66.667 0.00 0.00 39.17 4.24
550 704 2.433446 CTGGGTGGTGCTCTGCTT 59.567 61.111 0.00 0.00 0.00 3.91
551 705 1.228367 CTGGGTGGTGCTCTGCTTT 60.228 57.895 0.00 0.00 0.00 3.51
552 706 1.521450 CTGGGTGGTGCTCTGCTTTG 61.521 60.000 0.00 0.00 0.00 2.77
554 708 2.647297 GTGGTGCTCTGCTTTGGC 59.353 61.111 0.00 0.00 39.26 4.52
555 709 1.900498 GTGGTGCTCTGCTTTGGCT 60.900 57.895 0.00 0.00 39.59 4.75
557 711 2.257676 GTGCTCTGCTTTGGCTGC 59.742 61.111 0.00 0.00 39.59 5.25
558 712 2.203379 TGCTCTGCTTTGGCTGCA 60.203 55.556 0.50 0.00 39.59 4.41
563 717 4.069869 TGCTTTGGCTGCAGACTC 57.930 55.556 22.80 7.89 39.59 3.36
565 719 2.684843 GCTTTGGCTGCAGACTCGG 61.685 63.158 22.80 11.27 35.22 4.63
573 727 3.827898 GCAGACTCGGGACTCGGG 61.828 72.222 0.00 0.00 46.65 5.14
577 731 3.336568 ACTCGGGACTCGGGAGGA 61.337 66.667 0.00 0.00 43.26 3.71
591 757 1.062044 GGGAGGAGAGGATGGGTAGTT 60.062 57.143 0.00 0.00 0.00 2.24
633 811 1.230314 AGGGAAAGGGGAAGGGGAG 60.230 63.158 0.00 0.00 0.00 4.30
638 816 0.800239 AAAGGGGAAGGGGAGAGAGA 59.200 55.000 0.00 0.00 0.00 3.10
639 817 1.031112 AAGGGGAAGGGGAGAGAGAT 58.969 55.000 0.00 0.00 0.00 2.75
640 818 1.942882 AGGGGAAGGGGAGAGAGATA 58.057 55.000 0.00 0.00 0.00 1.98
659 2909 2.726832 AAACTAGTGTCAGCGTCCTC 57.273 50.000 0.00 0.00 0.00 3.71
715 3519 1.407721 CGTACACGTACACGGCCATG 61.408 60.000 2.24 0.00 44.95 3.66
716 3520 1.446445 TACACGTACACGGCCATGC 60.446 57.895 0.00 0.00 44.95 4.06
717 3521 2.839043 TACACGTACACGGCCATGCC 62.839 60.000 0.00 0.00 46.75 4.40
733 3537 2.559840 CCACGCGTCTACAGTCGT 59.440 61.111 9.86 0.00 35.35 4.34
735 3539 1.205820 CACGCGTCTACAGTCGTCA 59.794 57.895 9.86 0.00 32.38 4.35
739 3592 1.864862 CGTCTACAGTCGTCACCGT 59.135 57.895 0.00 0.00 35.01 4.83
740 3593 1.070821 CGTCTACAGTCGTCACCGTA 58.929 55.000 0.00 0.00 35.01 4.02
742 3595 1.800586 GTCTACAGTCGTCACCGTACA 59.199 52.381 0.00 0.00 35.01 2.90
743 3596 1.800586 TCTACAGTCGTCACCGTACAC 59.199 52.381 0.00 0.00 35.01 2.90
746 3599 0.512518 CAGTCGTCACCGTACACGTA 59.487 55.000 0.58 0.00 37.30 3.57
754 3607 2.254951 CGTACACGTACACGGCCA 59.745 61.111 2.24 0.00 44.95 5.36
755 3608 1.153978 CGTACACGTACACGGCCAT 60.154 57.895 2.24 0.00 44.95 4.40
757 3610 1.446445 TACACGTACACGGCCATGC 60.446 57.895 0.00 0.00 44.95 4.06
768 3621 3.564027 GCCATGCCACGCGTCTAC 61.564 66.667 9.86 1.47 0.00 2.59
770 3623 2.167219 CCATGCCACGCGTCTACAG 61.167 63.158 9.86 0.00 0.00 2.74
772 3625 1.153823 ATGCCACGCGTCTACAGTC 60.154 57.895 9.86 0.00 0.00 3.51
773 3626 2.867333 ATGCCACGCGTCTACAGTCG 62.867 60.000 9.86 0.00 0.00 4.18
774 3627 2.559840 CCACGCGTCTACAGTCGT 59.440 61.111 9.86 0.00 35.35 4.34
775 3628 1.511464 CCACGCGTCTACAGTCGTC 60.511 63.158 9.86 0.00 32.38 4.20
776 3629 1.205820 CACGCGTCTACAGTCGTCA 59.794 57.895 9.86 0.00 32.38 4.35
779 3632 1.511464 GCGTCTACAGTCGTCACCG 60.511 63.158 0.00 0.00 0.00 4.94
780 3633 1.864862 CGTCTACAGTCGTCACCGT 59.135 57.895 0.00 0.00 35.01 4.83
781 3634 1.070821 CGTCTACAGTCGTCACCGTA 58.929 55.000 0.00 0.00 35.01 4.02
783 3636 1.800586 GTCTACAGTCGTCACCGTACA 59.199 52.381 0.00 0.00 35.01 2.90
784 3637 1.800586 TCTACAGTCGTCACCGTACAC 59.199 52.381 0.00 0.00 35.01 2.90
785 3638 0.512518 TACAGTCGTCACCGTACACG 59.487 55.000 0.00 0.00 37.36 4.49
787 3640 0.512518 CAGTCGTCACCGTACACGTA 59.487 55.000 0.58 0.00 37.30 3.57
788 3641 0.512952 AGTCGTCACCGTACACGTAC 59.487 55.000 0.58 0.00 37.30 3.67
789 3642 0.234625 GTCGTCACCGTACACGTACA 59.765 55.000 8.02 0.00 37.30 2.90
791 3644 1.054348 CGTCACCGTACACGTACACG 61.054 60.000 12.71 12.71 46.33 4.49
795 3648 2.254951 CGTACACGTACACGGCCA 59.745 61.111 2.24 0.00 44.95 5.36
867 5547 0.036732 TGGGCCTTGACATGACAGAC 59.963 55.000 4.53 0.00 0.00 3.51
957 5637 4.827284 TCTGATGTTGAGTGGAGCGATATA 59.173 41.667 0.00 0.00 0.00 0.86
973 5653 7.873719 AGCGATATATGCTCTAGTCTACAAT 57.126 36.000 0.00 0.00 38.62 2.71
1107 5790 7.786030 ACTTGAGCTCTAATTGCTTATCACTA 58.214 34.615 16.19 0.00 41.30 2.74
1404 6091 7.727578 TGAGGTTAATATCAGGACACTACAA 57.272 36.000 0.00 0.00 0.00 2.41
1405 6092 8.319057 TGAGGTTAATATCAGGACACTACAAT 57.681 34.615 0.00 0.00 0.00 2.71
1406 6093 8.204160 TGAGGTTAATATCAGGACACTACAATG 58.796 37.037 0.00 0.00 0.00 2.82
1407 6094 7.509546 AGGTTAATATCAGGACACTACAATGG 58.490 38.462 0.00 0.00 0.00 3.16
1408 6095 7.347222 AGGTTAATATCAGGACACTACAATGGA 59.653 37.037 0.00 0.00 0.00 3.41
1409 6096 7.990886 GGTTAATATCAGGACACTACAATGGAA 59.009 37.037 0.00 0.00 0.00 3.53
1410 6097 9.046296 GTTAATATCAGGACACTACAATGGAAG 57.954 37.037 0.00 0.00 0.00 3.46
1411 6098 7.437713 AATATCAGGACACTACAATGGAAGA 57.562 36.000 0.00 0.00 0.00 2.87
1412 6099 5.762179 ATCAGGACACTACAATGGAAGAA 57.238 39.130 0.00 0.00 0.00 2.52
1413 6100 5.152623 TCAGGACACTACAATGGAAGAAG 57.847 43.478 0.00 0.00 0.00 2.85
1414 6101 3.686726 CAGGACACTACAATGGAAGAAGC 59.313 47.826 0.00 0.00 0.00 3.86
1415 6102 3.584848 AGGACACTACAATGGAAGAAGCT 59.415 43.478 0.00 0.00 0.00 3.74
1686 6461 8.822855 CGAATGTTACACCTAATTATGCTTACA 58.177 33.333 0.00 0.00 0.00 2.41
1840 6616 2.808543 GCCACTCTCGTCAACAAGAAAT 59.191 45.455 0.00 0.00 0.00 2.17
1923 6705 3.055530 TGTGGTGCAATGGTTCTTGTTTT 60.056 39.130 0.00 0.00 0.00 2.43
1924 6706 3.555547 GTGGTGCAATGGTTCTTGTTTTC 59.444 43.478 0.00 0.00 0.00 2.29
1925 6707 3.450457 TGGTGCAATGGTTCTTGTTTTCT 59.550 39.130 0.00 0.00 0.00 2.52
1926 6708 4.051237 GGTGCAATGGTTCTTGTTTTCTC 58.949 43.478 0.00 0.00 0.00 2.87
1927 6709 3.730715 GTGCAATGGTTCTTGTTTTCTCG 59.269 43.478 0.00 0.00 0.00 4.04
1928 6710 2.726241 GCAATGGTTCTTGTTTTCTCGC 59.274 45.455 0.00 0.00 0.00 5.03
1929 6711 3.795150 GCAATGGTTCTTGTTTTCTCGCA 60.795 43.478 0.00 0.00 0.00 5.10
1930 6712 4.549458 CAATGGTTCTTGTTTTCTCGCAT 58.451 39.130 0.00 0.00 0.00 4.73
2200 6983 4.340097 TGATGAGAAAATGGTGATGGCATC 59.660 41.667 20.52 20.52 0.00 3.91
2217 7002 3.134458 GCATCTACATGGCTAGTGGTTC 58.866 50.000 0.00 0.00 0.00 3.62
2427 7220 1.794701 GCGCGCATGAAGATCTCATAA 59.205 47.619 29.10 0.00 43.28 1.90
2431 7226 4.531332 GCGCATGAAGATCTCATAAAACC 58.469 43.478 0.30 0.00 43.28 3.27
2674 7469 3.138468 AGGAAAGTTGTTGTTAGGCCTCT 59.862 43.478 9.68 0.00 0.00 3.69
2675 7470 3.253432 GGAAAGTTGTTGTTAGGCCTCTG 59.747 47.826 9.68 0.00 0.00 3.35
2676 7471 3.857157 AAGTTGTTGTTAGGCCTCTGA 57.143 42.857 9.68 0.00 0.00 3.27
2677 7472 4.373156 AAGTTGTTGTTAGGCCTCTGAT 57.627 40.909 9.68 0.00 0.00 2.90
2678 7473 3.679389 AGTTGTTGTTAGGCCTCTGATG 58.321 45.455 9.68 0.00 0.00 3.07
2679 7474 3.327757 AGTTGTTGTTAGGCCTCTGATGA 59.672 43.478 9.68 0.00 0.00 2.92
2680 7475 3.334583 TGTTGTTAGGCCTCTGATGAC 57.665 47.619 9.68 2.48 0.00 3.06
2681 7476 2.027192 TGTTGTTAGGCCTCTGATGACC 60.027 50.000 9.68 0.00 0.00 4.02
2682 7477 1.204146 TGTTAGGCCTCTGATGACCC 58.796 55.000 9.68 0.00 0.00 4.46
2683 7478 1.204146 GTTAGGCCTCTGATGACCCA 58.796 55.000 9.68 0.00 0.00 4.51
2684 7479 1.134371 GTTAGGCCTCTGATGACCCAC 60.134 57.143 9.68 0.00 0.00 4.61
2685 7480 0.042581 TAGGCCTCTGATGACCCACA 59.957 55.000 9.68 0.00 0.00 4.17
2686 7481 0.842030 AGGCCTCTGATGACCCACAA 60.842 55.000 0.00 0.00 0.00 3.33
2687 7482 0.393537 GGCCTCTGATGACCCACAAG 60.394 60.000 0.00 0.00 0.00 3.16
2688 7483 0.326264 GCCTCTGATGACCCACAAGT 59.674 55.000 0.00 0.00 0.00 3.16
2689 7484 1.555075 GCCTCTGATGACCCACAAGTA 59.445 52.381 0.00 0.00 0.00 2.24
2690 7485 2.171448 GCCTCTGATGACCCACAAGTAT 59.829 50.000 0.00 0.00 0.00 2.12
2691 7486 3.388024 GCCTCTGATGACCCACAAGTATA 59.612 47.826 0.00 0.00 0.00 1.47
2692 7487 4.502259 GCCTCTGATGACCCACAAGTATAG 60.502 50.000 0.00 0.00 0.00 1.31
2693 7488 4.039730 CCTCTGATGACCCACAAGTATAGG 59.960 50.000 0.00 0.00 0.00 2.57
2702 7497 5.941555 CCCACAAGTATAGGGGATCTATC 57.058 47.826 0.00 0.00 43.57 2.08
2703 7498 4.402793 CCCACAAGTATAGGGGATCTATCG 59.597 50.000 0.00 0.00 43.57 2.92
2704 7499 5.017490 CCACAAGTATAGGGGATCTATCGT 58.983 45.833 0.00 0.00 39.30 3.73
2705 7500 6.185511 CCACAAGTATAGGGGATCTATCGTA 58.814 44.000 0.00 0.00 39.30 3.43
2706 7501 6.319152 CCACAAGTATAGGGGATCTATCGTAG 59.681 46.154 0.00 0.00 39.30 3.51
2707 7502 6.885376 CACAAGTATAGGGGATCTATCGTAGT 59.115 42.308 0.00 0.00 39.30 2.73
2708 7503 7.066043 CACAAGTATAGGGGATCTATCGTAGTC 59.934 44.444 0.00 0.00 39.30 2.59
2709 7504 6.251255 AGTATAGGGGATCTATCGTAGTCC 57.749 45.833 0.00 0.00 39.30 3.85
2710 7505 5.971881 AGTATAGGGGATCTATCGTAGTCCT 59.028 44.000 0.00 0.00 39.30 3.85
2711 7506 5.799978 ATAGGGGATCTATCGTAGTCCTT 57.200 43.478 0.00 0.00 33.60 3.36
2712 7507 4.472690 AGGGGATCTATCGTAGTCCTTT 57.527 45.455 0.00 0.00 0.00 3.11
2713 7508 4.409187 AGGGGATCTATCGTAGTCCTTTC 58.591 47.826 0.00 0.00 0.00 2.62
2714 7509 3.190953 GGGGATCTATCGTAGTCCTTTCG 59.809 52.174 0.00 0.00 0.00 3.46
2715 7510 4.070716 GGGATCTATCGTAGTCCTTTCGA 58.929 47.826 0.00 0.00 37.96 3.71
2716 7511 4.701171 GGGATCTATCGTAGTCCTTTCGAT 59.299 45.833 0.00 0.00 44.53 3.59
2717 7512 5.879223 GGGATCTATCGTAGTCCTTTCGATA 59.121 44.000 0.00 0.00 42.78 2.92
2718 7513 6.373774 GGGATCTATCGTAGTCCTTTCGATAA 59.626 42.308 7.65 1.63 42.90 1.75
2719 7514 7.414319 GGGATCTATCGTAGTCCTTTCGATAAG 60.414 44.444 7.65 0.00 42.90 1.73
2720 7515 7.119553 GGATCTATCGTAGTCCTTTCGATAAGT 59.880 40.741 7.65 1.07 42.90 2.24
2721 7516 9.149225 GATCTATCGTAGTCCTTTCGATAAGTA 57.851 37.037 7.65 0.00 42.90 2.24
2722 7517 8.893219 TCTATCGTAGTCCTTTCGATAAGTAA 57.107 34.615 7.65 0.00 42.90 2.24
2723 7518 8.986847 TCTATCGTAGTCCTTTCGATAAGTAAG 58.013 37.037 7.65 0.00 42.90 2.34
2724 7519 7.798596 ATCGTAGTCCTTTCGATAAGTAAGA 57.201 36.000 0.00 0.00 41.46 2.10
2725 7520 7.244166 TCGTAGTCCTTTCGATAAGTAAGAG 57.756 40.000 0.00 0.00 29.89 2.85
2726 7521 6.820656 TCGTAGTCCTTTCGATAAGTAAGAGT 59.179 38.462 0.00 0.00 29.89 3.24
2727 7522 6.906143 CGTAGTCCTTTCGATAAGTAAGAGTG 59.094 42.308 0.00 0.00 29.89 3.51
2728 7523 6.837471 AGTCCTTTCGATAAGTAAGAGTGT 57.163 37.500 0.00 0.00 29.89 3.55
2729 7524 6.854778 AGTCCTTTCGATAAGTAAGAGTGTC 58.145 40.000 0.00 0.00 29.89 3.67
2730 7525 5.738225 GTCCTTTCGATAAGTAAGAGTGTCG 59.262 44.000 0.00 0.00 29.89 4.35
2731 7526 5.645067 TCCTTTCGATAAGTAAGAGTGTCGA 59.355 40.000 0.00 0.00 36.46 4.20
2732 7527 6.149973 TCCTTTCGATAAGTAAGAGTGTCGAA 59.850 38.462 4.17 4.17 43.60 3.71
2733 7528 6.250951 CCTTTCGATAAGTAAGAGTGTCGAAC 59.749 42.308 7.42 0.00 44.53 3.95
2734 7529 5.227238 TCGATAAGTAAGAGTGTCGAACC 57.773 43.478 0.00 0.00 35.48 3.62
2735 7530 4.095483 TCGATAAGTAAGAGTGTCGAACCC 59.905 45.833 0.00 0.00 35.48 4.11
2736 7531 4.142534 CGATAAGTAAGAGTGTCGAACCCA 60.143 45.833 0.00 0.00 0.00 4.51
2737 7532 5.620654 CGATAAGTAAGAGTGTCGAACCCAA 60.621 44.000 0.00 0.00 0.00 4.12
2738 7533 3.382048 AGTAAGAGTGTCGAACCCAAC 57.618 47.619 0.00 0.00 0.00 3.77
2739 7534 2.056577 GTAAGAGTGTCGAACCCAACG 58.943 52.381 0.00 0.00 0.00 4.10
2740 7535 0.748450 AAGAGTGTCGAACCCAACGA 59.252 50.000 0.00 0.00 37.43 3.85
2741 7536 0.314302 AGAGTGTCGAACCCAACGAG 59.686 55.000 0.00 0.00 40.37 4.18
2742 7537 0.666577 GAGTGTCGAACCCAACGAGG 60.667 60.000 0.00 0.00 40.37 4.63
2743 7538 1.111116 AGTGTCGAACCCAACGAGGA 61.111 55.000 0.00 0.00 41.22 3.71
2744 7539 0.666577 GTGTCGAACCCAACGAGGAG 60.667 60.000 0.00 0.00 41.22 3.69
2745 7540 1.737008 GTCGAACCCAACGAGGAGC 60.737 63.158 0.00 0.00 41.22 4.70
2746 7541 2.204461 TCGAACCCAACGAGGAGCA 61.204 57.895 0.00 0.00 41.22 4.26
2747 7542 1.738099 CGAACCCAACGAGGAGCAG 60.738 63.158 0.00 0.00 41.22 4.24
2748 7543 1.671742 GAACCCAACGAGGAGCAGA 59.328 57.895 0.00 0.00 41.22 4.26
2749 7544 0.034896 GAACCCAACGAGGAGCAGAA 59.965 55.000 0.00 0.00 41.22 3.02
2750 7545 0.035458 AACCCAACGAGGAGCAGAAG 59.965 55.000 0.00 0.00 41.22 2.85
2751 7546 1.078848 CCCAACGAGGAGCAGAAGG 60.079 63.158 0.00 0.00 41.22 3.46
2752 7547 1.544825 CCCAACGAGGAGCAGAAGGA 61.545 60.000 0.00 0.00 41.22 3.36
2753 7548 0.321671 CCAACGAGGAGCAGAAGGAA 59.678 55.000 0.00 0.00 41.22 3.36
2754 7549 1.270839 CCAACGAGGAGCAGAAGGAAA 60.271 52.381 0.00 0.00 41.22 3.13
2755 7550 2.616510 CCAACGAGGAGCAGAAGGAAAT 60.617 50.000 0.00 0.00 41.22 2.17
2756 7551 2.393271 ACGAGGAGCAGAAGGAAATG 57.607 50.000 0.00 0.00 0.00 2.32
2757 7552 1.902508 ACGAGGAGCAGAAGGAAATGA 59.097 47.619 0.00 0.00 0.00 2.57
2758 7553 2.503356 ACGAGGAGCAGAAGGAAATGAT 59.497 45.455 0.00 0.00 0.00 2.45
2759 7554 3.706594 ACGAGGAGCAGAAGGAAATGATA 59.293 43.478 0.00 0.00 0.00 2.15
2760 7555 4.162320 ACGAGGAGCAGAAGGAAATGATAA 59.838 41.667 0.00 0.00 0.00 1.75
2761 7556 4.749099 CGAGGAGCAGAAGGAAATGATAAG 59.251 45.833 0.00 0.00 0.00 1.73
2762 7557 4.459330 AGGAGCAGAAGGAAATGATAAGC 58.541 43.478 0.00 0.00 0.00 3.09
2763 7558 3.249559 GGAGCAGAAGGAAATGATAAGCG 59.750 47.826 0.00 0.00 0.00 4.68
2764 7559 3.209410 AGCAGAAGGAAATGATAAGCGG 58.791 45.455 0.00 0.00 0.00 5.52
2765 7560 2.945668 GCAGAAGGAAATGATAAGCGGT 59.054 45.455 0.00 0.00 0.00 5.68
2766 7561 3.378427 GCAGAAGGAAATGATAAGCGGTT 59.622 43.478 4.76 4.76 0.00 4.44
2767 7562 4.142381 GCAGAAGGAAATGATAAGCGGTTT 60.142 41.667 4.64 0.00 0.00 3.27
2768 7563 5.573146 CAGAAGGAAATGATAAGCGGTTTC 58.427 41.667 4.64 3.95 0.00 2.78
2769 7564 4.640647 AGAAGGAAATGATAAGCGGTTTCC 59.359 41.667 4.64 5.19 46.26 3.13
2771 7566 4.292977 GGAAATGATAAGCGGTTTCCAG 57.707 45.455 4.64 0.00 45.57 3.86
2772 7567 3.489229 GGAAATGATAAGCGGTTTCCAGC 60.489 47.826 4.64 0.00 45.57 4.85
2773 7568 2.418368 ATGATAAGCGGTTTCCAGCA 57.582 45.000 4.64 0.00 35.48 4.41
2774 7569 2.192664 TGATAAGCGGTTTCCAGCAA 57.807 45.000 4.64 0.00 35.48 3.91
2775 7570 2.083774 TGATAAGCGGTTTCCAGCAAG 58.916 47.619 4.64 0.00 35.48 4.01
2776 7571 1.401905 GATAAGCGGTTTCCAGCAAGG 59.598 52.381 4.64 0.00 39.47 3.61
2777 7572 0.109723 TAAGCGGTTTCCAGCAAGGT 59.890 50.000 4.64 0.00 39.02 3.50
2778 7573 0.109723 AAGCGGTTTCCAGCAAGGTA 59.890 50.000 0.00 0.00 39.02 3.08
2779 7574 0.328258 AGCGGTTTCCAGCAAGGTAT 59.672 50.000 0.00 0.00 39.02 2.73
2780 7575 1.173913 GCGGTTTCCAGCAAGGTATT 58.826 50.000 0.00 0.00 39.02 1.89
2781 7576 1.132453 GCGGTTTCCAGCAAGGTATTC 59.868 52.381 0.00 0.00 39.02 1.75
2782 7577 2.711542 CGGTTTCCAGCAAGGTATTCT 58.288 47.619 0.00 0.00 39.02 2.40
2783 7578 2.678336 CGGTTTCCAGCAAGGTATTCTC 59.322 50.000 0.00 0.00 39.02 2.87
2784 7579 3.619979 CGGTTTCCAGCAAGGTATTCTCT 60.620 47.826 0.00 0.00 39.02 3.10
2785 7580 3.691609 GGTTTCCAGCAAGGTATTCTCTG 59.308 47.826 0.00 0.00 39.02 3.35
2786 7581 2.698855 TCCAGCAAGGTATTCTCTGC 57.301 50.000 0.00 0.00 39.02 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 3.313803 TGTTTTGCTGCGACAGTCAATTA 59.686 39.130 0.41 3.64 33.43 1.40
31 34 1.533625 TCCATAACACTGTTGCTGGC 58.466 50.000 15.64 0.00 0.00 4.85
32 35 4.582701 TTTTCCATAACACTGTTGCTGG 57.417 40.909 14.80 14.80 0.00 4.85
33 36 5.771469 TGATTTTCCATAACACTGTTGCTG 58.229 37.500 4.57 2.60 0.00 4.41
122 138 6.028368 CGCCATCTCCGTACTAGTATTATTG 58.972 44.000 5.75 0.58 0.00 1.90
136 152 0.389817 TGAACTCAACGCCATCTCCG 60.390 55.000 0.00 0.00 0.00 4.63
151 183 1.131883 GCATGAGTGAGTGGCATGAAC 59.868 52.381 0.00 0.00 41.35 3.18
155 187 2.026915 TGTTAGCATGAGTGAGTGGCAT 60.027 45.455 0.00 0.00 0.00 4.40
156 188 1.347378 TGTTAGCATGAGTGAGTGGCA 59.653 47.619 0.00 0.00 0.00 4.92
157 189 2.099141 TGTTAGCATGAGTGAGTGGC 57.901 50.000 0.00 0.00 0.00 5.01
158 190 5.181811 TGAATTTGTTAGCATGAGTGAGTGG 59.818 40.000 0.00 0.00 0.00 4.00
163 195 6.245115 TGACTGAATTTGTTAGCATGAGTG 57.755 37.500 0.00 0.00 0.00 3.51
164 196 5.106396 GCTGACTGAATTTGTTAGCATGAGT 60.106 40.000 17.86 0.00 43.56 3.41
233 310 2.160205 GGGACTAGGTTTTGTTCAGGC 58.840 52.381 0.00 0.00 0.00 4.85
254 331 0.617935 TTCATGGATTCAGTGGGCGA 59.382 50.000 0.00 0.00 0.00 5.54
256 333 1.959282 GGATTCATGGATTCAGTGGGC 59.041 52.381 0.00 0.00 0.00 5.36
282 371 2.202824 TTATTGGTCTCCGCCGCG 60.203 61.111 5.59 5.59 0.00 6.46
290 379 3.433173 GGTTATCGGCTGGTTATTGGTCT 60.433 47.826 0.00 0.00 0.00 3.85
337 469 1.153549 CTTCCCTTTCGCTCTCCCG 60.154 63.158 0.00 0.00 0.00 5.14
354 489 2.863988 CCACCCAACCCCCTTCCT 60.864 66.667 0.00 0.00 0.00 3.36
365 500 1.229400 GTACTCAGGACCCCACCCA 60.229 63.158 0.00 0.00 0.00 4.51
505 645 0.103937 GGAAGAGCACGAGGAGATGG 59.896 60.000 0.00 0.00 0.00 3.51
541 695 2.203379 TGCAGCCAAAGCAGAGCA 60.203 55.556 0.00 0.00 43.56 4.26
546 700 1.962822 CGAGTCTGCAGCCAAAGCA 60.963 57.895 9.47 0.00 43.56 3.91
547 701 2.684843 CCGAGTCTGCAGCCAAAGC 61.685 63.158 9.47 0.00 40.32 3.51
548 702 2.037136 CCCGAGTCTGCAGCCAAAG 61.037 63.158 9.47 0.00 0.00 2.77
549 703 2.032528 CCCGAGTCTGCAGCCAAA 59.967 61.111 9.47 0.00 0.00 3.28
550 704 2.922503 TCCCGAGTCTGCAGCCAA 60.923 61.111 9.47 0.00 0.00 4.52
551 705 3.695606 GTCCCGAGTCTGCAGCCA 61.696 66.667 9.47 0.00 0.00 4.75
552 706 3.363844 GAGTCCCGAGTCTGCAGCC 62.364 68.421 9.47 0.00 0.00 4.85
554 708 2.487428 CGAGTCCCGAGTCTGCAG 59.513 66.667 7.63 7.63 41.76 4.41
555 709 3.062466 CCGAGTCCCGAGTCTGCA 61.062 66.667 0.00 0.00 41.76 4.41
557 711 2.045242 TCCCGAGTCCCGAGTCTG 60.045 66.667 0.00 0.00 41.76 3.51
558 712 2.272797 CTCCCGAGTCCCGAGTCT 59.727 66.667 0.00 0.00 41.76 3.24
559 713 2.829458 CCTCCCGAGTCCCGAGTC 60.829 72.222 0.00 0.00 41.76 3.36
560 714 3.336568 TCCTCCCGAGTCCCGAGT 61.337 66.667 0.00 0.00 41.76 4.18
561 715 2.517402 CTCCTCCCGAGTCCCGAG 60.517 72.222 0.00 0.00 41.76 4.63
562 716 3.013327 TCTCCTCCCGAGTCCCGA 61.013 66.667 0.00 0.00 41.76 5.14
563 717 2.517402 CTCTCCTCCCGAGTCCCG 60.517 72.222 0.00 0.00 39.84 5.14
565 719 0.825840 CATCCTCTCCTCCCGAGTCC 60.826 65.000 0.00 0.00 39.84 3.85
573 727 2.043227 CCAACTACCCATCCTCTCCTC 58.957 57.143 0.00 0.00 0.00 3.71
577 731 2.225650 ACAGTCCAACTACCCATCCTCT 60.226 50.000 0.00 0.00 0.00 3.69
591 757 2.574018 CGCTCCACTCCACAGTCCA 61.574 63.158 0.00 0.00 0.00 4.02
633 811 5.238006 ACGCTGACACTAGTTTATCTCTC 57.762 43.478 0.00 0.00 0.00 3.20
638 816 3.762288 TGAGGACGCTGACACTAGTTTAT 59.238 43.478 0.00 0.00 0.00 1.40
639 817 3.151554 TGAGGACGCTGACACTAGTTTA 58.848 45.455 0.00 0.00 0.00 2.01
640 818 1.961394 TGAGGACGCTGACACTAGTTT 59.039 47.619 0.00 0.00 0.00 2.66
715 3519 2.874780 CGACTGTAGACGCGTGGC 60.875 66.667 20.70 1.78 0.00 5.01
716 3520 1.511464 GACGACTGTAGACGCGTGG 60.511 63.158 20.70 3.70 37.07 4.94
717 3521 1.058590 GTGACGACTGTAGACGCGTG 61.059 60.000 20.70 3.63 37.07 5.34
718 3522 1.206072 GTGACGACTGTAGACGCGT 59.794 57.895 13.85 13.85 39.99 6.01
719 3523 1.511464 GGTGACGACTGTAGACGCG 60.511 63.158 3.53 3.53 36.73 6.01
739 3592 1.446445 GCATGGCCGTGTACGTGTA 60.446 57.895 25.67 0.00 37.74 2.90
740 3593 2.740826 GCATGGCCGTGTACGTGT 60.741 61.111 25.67 0.00 37.74 4.49
752 3605 2.125713 TGTAGACGCGTGGCATGG 60.126 61.111 20.70 1.28 0.00 3.66
754 3607 1.153823 GACTGTAGACGCGTGGCAT 60.154 57.895 20.70 1.64 0.00 4.40
755 3608 2.257371 GACTGTAGACGCGTGGCA 59.743 61.111 20.70 11.78 0.00 4.92
757 3610 1.511464 GACGACTGTAGACGCGTGG 60.511 63.158 20.70 3.70 37.07 4.94
759 3612 1.206072 GTGACGACTGTAGACGCGT 59.794 57.895 13.85 13.85 39.99 6.01
773 3626 2.699910 CGTGTACGTGTACGGTGAC 58.300 57.895 15.78 4.69 44.95 3.67
779 3632 2.082366 CGTGGCCGTGTACGTGTAC 61.082 63.158 0.00 3.21 37.74 2.90
780 3633 2.254951 CGTGGCCGTGTACGTGTA 59.745 61.111 0.00 0.00 37.74 2.90
813 3919 2.119029 GGGCCCTGCATTACGGAAC 61.119 63.158 17.04 0.00 0.00 3.62
867 5547 2.997463 TGTGCAACACAATTGTCATCG 58.003 42.857 8.48 0.00 45.67 3.84
957 5637 4.878397 GGTGCAAATTGTAGACTAGAGCAT 59.122 41.667 0.00 0.00 0.00 3.79
1107 5790 1.477700 CCGGACAATGGTGCATCAATT 59.522 47.619 2.42 0.00 34.61 2.32
1247 5934 4.022849 CGACTCTATGCATAGTCCATGACA 60.023 45.833 28.51 9.87 39.16 3.58
1404 6091 5.215069 TCTCTCTTCCATAGCTTCTTCCAT 58.785 41.667 0.00 0.00 0.00 3.41
1405 6092 4.614475 TCTCTCTTCCATAGCTTCTTCCA 58.386 43.478 0.00 0.00 0.00 3.53
1406 6093 4.892934 TCTCTCTCTTCCATAGCTTCTTCC 59.107 45.833 0.00 0.00 0.00 3.46
1407 6094 6.463995 TTCTCTCTCTTCCATAGCTTCTTC 57.536 41.667 0.00 0.00 0.00 2.87
1408 6095 6.865834 TTTCTCTCTCTTCCATAGCTTCTT 57.134 37.500 0.00 0.00 0.00 2.52
1409 6096 7.418942 GGAATTTCTCTCTCTTCCATAGCTTCT 60.419 40.741 0.00 0.00 37.65 2.85
1410 6097 6.705825 GGAATTTCTCTCTCTTCCATAGCTTC 59.294 42.308 0.00 0.00 37.65 3.86
1411 6098 6.591001 GGAATTTCTCTCTCTTCCATAGCTT 58.409 40.000 0.00 0.00 37.65 3.74
1412 6099 5.221422 CGGAATTTCTCTCTCTTCCATAGCT 60.221 44.000 0.00 0.00 37.59 3.32
1413 6100 4.987912 CGGAATTTCTCTCTCTTCCATAGC 59.012 45.833 0.00 0.00 37.59 2.97
1414 6101 6.155475 ACGGAATTTCTCTCTCTTCCATAG 57.845 41.667 0.00 0.00 37.59 2.23
1415 6102 6.546428 AACGGAATTTCTCTCTCTTCCATA 57.454 37.500 0.00 0.00 37.59 2.74
1695 6470 6.263168 AGGGATGCTACGATAAAATTTCCAAG 59.737 38.462 0.00 0.00 0.00 3.61
1840 6616 6.599244 CCTTTGTTGCCTCTGAGTTGATTATA 59.401 38.462 3.66 0.00 0.00 0.98
1923 6705 2.159240 ACAATAGTGCGAGAATGCGAGA 60.159 45.455 0.00 0.00 37.81 4.04
1924 6706 2.196749 ACAATAGTGCGAGAATGCGAG 58.803 47.619 0.00 0.00 37.81 5.03
1925 6707 2.293677 ACAATAGTGCGAGAATGCGA 57.706 45.000 0.00 0.00 37.81 5.10
1926 6708 2.604914 AGAACAATAGTGCGAGAATGCG 59.395 45.455 0.00 0.00 37.81 4.73
1927 6709 4.606457 AAGAACAATAGTGCGAGAATGC 57.394 40.909 0.00 0.00 0.00 3.56
1928 6710 5.284660 GCAAAAGAACAATAGTGCGAGAATG 59.715 40.000 0.00 0.00 0.00 2.67
1929 6711 5.182001 AGCAAAAGAACAATAGTGCGAGAAT 59.818 36.000 0.00 0.00 37.09 2.40
1930 6712 4.515191 AGCAAAAGAACAATAGTGCGAGAA 59.485 37.500 0.00 0.00 37.09 2.87
2009 6791 7.045354 GCGAGAAAATTGAGATTCATTACAACG 60.045 37.037 0.00 0.00 0.00 4.10
2160 6943 4.009002 TCATCAATGCCACATCTTTTCGA 58.991 39.130 0.00 0.00 0.00 3.71
2200 6983 4.321304 CGATAGGAACCACTAGCCATGTAG 60.321 50.000 0.00 0.00 0.00 2.74
2217 7002 2.847327 ATCATGTCTTGGGCGATAGG 57.153 50.000 0.00 0.00 0.00 2.57
2371 7163 2.027561 CCATCCACCTTCAGTTTCCGTA 60.028 50.000 0.00 0.00 0.00 4.02
2372 7164 1.271379 CCATCCACCTTCAGTTTCCGT 60.271 52.381 0.00 0.00 0.00 4.69
2409 7202 4.274459 AGGTTTTATGAGATCTTCATGCGC 59.726 41.667 0.00 0.00 46.01 6.09
2427 7220 7.618117 TGGAGGAACTAAAGAAAGAAAAGGTTT 59.382 33.333 0.00 0.00 41.55 3.27
2431 7226 6.546034 TGGTGGAGGAACTAAAGAAAGAAAAG 59.454 38.462 0.00 0.00 41.55 2.27
2443 7238 5.165961 CAAAGAGATTGGTGGAGGAACTA 57.834 43.478 0.00 0.00 34.96 2.24
2665 7460 1.204146 GTGGGTCATCAGAGGCCTAA 58.796 55.000 4.42 0.00 0.00 2.69
2674 7469 3.045634 CCCCTATACTTGTGGGTCATCA 58.954 50.000 0.00 0.00 39.31 3.07
2675 7470 3.314693 TCCCCTATACTTGTGGGTCATC 58.685 50.000 0.00 0.00 39.31 2.92
2676 7471 3.431411 TCCCCTATACTTGTGGGTCAT 57.569 47.619 0.00 0.00 39.31 3.06
2677 7472 2.953093 TCCCCTATACTTGTGGGTCA 57.047 50.000 0.00 0.00 39.31 4.02
2678 7473 3.588569 AGATCCCCTATACTTGTGGGTC 58.411 50.000 0.00 0.00 39.31 4.46
2679 7474 3.726837 AGATCCCCTATACTTGTGGGT 57.273 47.619 0.00 0.00 39.31 4.51
2680 7475 4.402793 CGATAGATCCCCTATACTTGTGGG 59.597 50.000 0.00 0.00 38.17 4.61
2681 7476 5.017490 ACGATAGATCCCCTATACTTGTGG 58.983 45.833 0.00 0.00 38.17 4.17
2682 7477 6.885376 ACTACGATAGATCCCCTATACTTGTG 59.115 42.308 0.00 0.00 38.17 3.33
2683 7478 7.030234 ACTACGATAGATCCCCTATACTTGT 57.970 40.000 0.00 0.00 38.17 3.16
2684 7479 6.543100 GGACTACGATAGATCCCCTATACTTG 59.457 46.154 0.00 0.00 38.17 3.16
2685 7480 6.447735 AGGACTACGATAGATCCCCTATACTT 59.552 42.308 0.00 0.00 38.17 2.24
2686 7481 5.971881 AGGACTACGATAGATCCCCTATACT 59.028 44.000 0.00 0.00 38.17 2.12
2687 7482 6.251255 AGGACTACGATAGATCCCCTATAC 57.749 45.833 0.00 0.00 38.17 1.47
2688 7483 6.905067 AAGGACTACGATAGATCCCCTATA 57.095 41.667 0.00 0.00 38.17 1.31
2689 7484 5.799978 AAGGACTACGATAGATCCCCTAT 57.200 43.478 0.00 0.00 40.66 2.57
2690 7485 5.568392 GAAAGGACTACGATAGATCCCCTA 58.432 45.833 0.00 0.00 41.38 3.53
2691 7486 4.409187 GAAAGGACTACGATAGATCCCCT 58.591 47.826 0.00 0.00 41.38 4.79
2692 7487 3.190953 CGAAAGGACTACGATAGATCCCC 59.809 52.174 0.00 0.00 41.38 4.81
2693 7488 4.070716 TCGAAAGGACTACGATAGATCCC 58.929 47.826 0.00 0.00 41.38 3.85
2694 7489 5.883503 ATCGAAAGGACTACGATAGATCC 57.116 43.478 10.82 0.00 43.32 3.36
2695 7490 8.031848 ACTTATCGAAAGGACTACGATAGATC 57.968 38.462 15.42 0.00 45.19 2.75
2696 7491 7.982761 ACTTATCGAAAGGACTACGATAGAT 57.017 36.000 15.42 9.33 45.19 1.98
2697 7492 8.893219 TTACTTATCGAAAGGACTACGATAGA 57.107 34.615 15.42 9.84 45.19 1.98
2698 7493 8.986847 TCTTACTTATCGAAAGGACTACGATAG 58.013 37.037 15.42 13.25 45.19 2.08
2699 7494 8.893219 TCTTACTTATCGAAAGGACTACGATA 57.107 34.615 13.42 13.42 44.33 2.92
2700 7495 7.498570 ACTCTTACTTATCGAAAGGACTACGAT 59.501 37.037 14.84 14.84 46.07 3.73
2701 7496 6.820656 ACTCTTACTTATCGAAAGGACTACGA 59.179 38.462 10.65 0.00 40.18 3.43
2702 7497 6.906143 CACTCTTACTTATCGAAAGGACTACG 59.094 42.308 10.65 0.00 0.00 3.51
2703 7498 7.760437 ACACTCTTACTTATCGAAAGGACTAC 58.240 38.462 10.65 0.00 0.00 2.73
2704 7499 7.201591 CGACACTCTTACTTATCGAAAGGACTA 60.202 40.741 10.65 0.00 0.00 2.59
2705 7500 6.403418 CGACACTCTTACTTATCGAAAGGACT 60.403 42.308 10.65 0.00 0.00 3.85
2706 7501 5.738225 CGACACTCTTACTTATCGAAAGGAC 59.262 44.000 10.65 0.00 0.00 3.85
2707 7502 5.645067 TCGACACTCTTACTTATCGAAAGGA 59.355 40.000 10.65 1.49 35.80 3.36
2708 7503 5.877031 TCGACACTCTTACTTATCGAAAGG 58.123 41.667 10.65 0.00 35.80 3.11
2709 7504 6.250951 GGTTCGACACTCTTACTTATCGAAAG 59.749 42.308 8.30 0.00 46.48 2.62
2710 7505 6.088824 GGTTCGACACTCTTACTTATCGAAA 58.911 40.000 8.30 0.00 46.48 3.46
2711 7506 5.392380 GGGTTCGACACTCTTACTTATCGAA 60.392 44.000 2.99 2.99 43.90 3.71
2712 7507 4.095483 GGGTTCGACACTCTTACTTATCGA 59.905 45.833 0.00 0.00 36.85 3.59
2713 7508 4.142534 TGGGTTCGACACTCTTACTTATCG 60.143 45.833 0.00 0.00 0.00 2.92
2714 7509 5.320549 TGGGTTCGACACTCTTACTTATC 57.679 43.478 0.00 0.00 0.00 1.75
2715 7510 5.476614 GTTGGGTTCGACACTCTTACTTAT 58.523 41.667 0.00 0.00 0.00 1.73
2716 7511 4.557296 CGTTGGGTTCGACACTCTTACTTA 60.557 45.833 0.00 0.00 0.00 2.24
2717 7512 3.725490 GTTGGGTTCGACACTCTTACTT 58.275 45.455 0.00 0.00 0.00 2.24
2718 7513 2.288030 CGTTGGGTTCGACACTCTTACT 60.288 50.000 0.00 0.00 0.00 2.24
2719 7514 2.056577 CGTTGGGTTCGACACTCTTAC 58.943 52.381 0.00 0.00 0.00 2.34
2720 7515 1.955778 TCGTTGGGTTCGACACTCTTA 59.044 47.619 0.00 0.00 32.30 2.10
2721 7516 0.748450 TCGTTGGGTTCGACACTCTT 59.252 50.000 0.00 0.00 32.30 2.85
2722 7517 0.314302 CTCGTTGGGTTCGACACTCT 59.686 55.000 0.00 0.00 33.71 3.24
2723 7518 0.666577 CCTCGTTGGGTTCGACACTC 60.667 60.000 0.00 0.00 33.71 3.51
2724 7519 1.111116 TCCTCGTTGGGTTCGACACT 61.111 55.000 0.00 0.00 36.20 3.55
2725 7520 0.666577 CTCCTCGTTGGGTTCGACAC 60.667 60.000 0.00 0.00 36.20 3.67
2726 7521 1.663739 CTCCTCGTTGGGTTCGACA 59.336 57.895 0.00 0.00 36.20 4.35
2727 7522 1.737008 GCTCCTCGTTGGGTTCGAC 60.737 63.158 0.00 0.00 36.20 4.20
2728 7523 2.154798 CTGCTCCTCGTTGGGTTCGA 62.155 60.000 0.00 0.00 36.20 3.71
2729 7524 1.738099 CTGCTCCTCGTTGGGTTCG 60.738 63.158 0.00 0.00 36.20 3.95
2730 7525 0.034896 TTCTGCTCCTCGTTGGGTTC 59.965 55.000 0.00 0.00 36.20 3.62
2731 7526 0.035458 CTTCTGCTCCTCGTTGGGTT 59.965 55.000 0.00 0.00 36.20 4.11
2732 7527 1.674057 CTTCTGCTCCTCGTTGGGT 59.326 57.895 0.00 0.00 36.20 4.51
2733 7528 1.078848 CCTTCTGCTCCTCGTTGGG 60.079 63.158 0.00 0.00 36.20 4.12
2734 7529 0.321671 TTCCTTCTGCTCCTCGTTGG 59.678 55.000 0.00 0.00 37.10 3.77
2735 7530 2.169832 TTTCCTTCTGCTCCTCGTTG 57.830 50.000 0.00 0.00 0.00 4.10
2736 7531 2.303022 TCATTTCCTTCTGCTCCTCGTT 59.697 45.455 0.00 0.00 0.00 3.85
2737 7532 1.902508 TCATTTCCTTCTGCTCCTCGT 59.097 47.619 0.00 0.00 0.00 4.18
2738 7533 2.680312 TCATTTCCTTCTGCTCCTCG 57.320 50.000 0.00 0.00 0.00 4.63
2739 7534 4.514816 GCTTATCATTTCCTTCTGCTCCTC 59.485 45.833 0.00 0.00 0.00 3.71
2740 7535 4.459330 GCTTATCATTTCCTTCTGCTCCT 58.541 43.478 0.00 0.00 0.00 3.69
2741 7536 3.249559 CGCTTATCATTTCCTTCTGCTCC 59.750 47.826 0.00 0.00 0.00 4.70
2742 7537 3.249559 CCGCTTATCATTTCCTTCTGCTC 59.750 47.826 0.00 0.00 0.00 4.26
2743 7538 3.209410 CCGCTTATCATTTCCTTCTGCT 58.791 45.455 0.00 0.00 0.00 4.24
2744 7539 2.945668 ACCGCTTATCATTTCCTTCTGC 59.054 45.455 0.00 0.00 0.00 4.26
2745 7540 5.449177 GGAAACCGCTTATCATTTCCTTCTG 60.449 44.000 7.24 0.00 44.46 3.02
2746 7541 4.640647 GGAAACCGCTTATCATTTCCTTCT 59.359 41.667 7.24 0.00 44.46 2.85
2747 7542 4.398044 TGGAAACCGCTTATCATTTCCTTC 59.602 41.667 13.99 0.00 46.84 3.46
2748 7543 4.340617 TGGAAACCGCTTATCATTTCCTT 58.659 39.130 13.99 0.00 46.84 3.36
2749 7544 3.947834 CTGGAAACCGCTTATCATTTCCT 59.052 43.478 13.99 0.00 46.84 3.36
2750 7545 3.489229 GCTGGAAACCGCTTATCATTTCC 60.489 47.826 7.50 7.50 46.88 3.13
2751 7546 3.128589 TGCTGGAAACCGCTTATCATTTC 59.871 43.478 0.00 0.00 0.00 2.17
2752 7547 3.088532 TGCTGGAAACCGCTTATCATTT 58.911 40.909 0.00 0.00 0.00 2.32
2753 7548 2.722094 TGCTGGAAACCGCTTATCATT 58.278 42.857 0.00 0.00 0.00 2.57
2754 7549 2.418368 TGCTGGAAACCGCTTATCAT 57.582 45.000 0.00 0.00 0.00 2.45
2755 7550 2.083774 CTTGCTGGAAACCGCTTATCA 58.916 47.619 0.00 0.00 0.00 2.15
2756 7551 1.401905 CCTTGCTGGAAACCGCTTATC 59.598 52.381 0.00 0.00 38.35 1.75
2757 7552 1.271926 ACCTTGCTGGAAACCGCTTAT 60.272 47.619 3.40 0.00 39.71 1.73
2758 7553 0.109723 ACCTTGCTGGAAACCGCTTA 59.890 50.000 3.40 0.00 39.71 3.09
2759 7554 0.109723 TACCTTGCTGGAAACCGCTT 59.890 50.000 3.40 0.00 39.71 4.68
2760 7555 0.328258 ATACCTTGCTGGAAACCGCT 59.672 50.000 3.40 0.00 39.71 5.52
2761 7556 1.132453 GAATACCTTGCTGGAAACCGC 59.868 52.381 3.40 0.00 39.71 5.68
2762 7557 2.678336 GAGAATACCTTGCTGGAAACCG 59.322 50.000 3.40 0.00 39.71 4.44
2763 7558 3.691609 CAGAGAATACCTTGCTGGAAACC 59.308 47.826 3.40 0.00 39.71 3.27
2764 7559 3.127721 GCAGAGAATACCTTGCTGGAAAC 59.872 47.826 3.40 0.00 39.71 2.78
2765 7560 3.347216 GCAGAGAATACCTTGCTGGAAA 58.653 45.455 3.40 0.00 39.71 3.13
2766 7561 2.991250 GCAGAGAATACCTTGCTGGAA 58.009 47.619 3.40 0.00 39.71 3.53
2767 7562 2.698855 GCAGAGAATACCTTGCTGGA 57.301 50.000 3.40 0.00 39.71 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.