Multiple sequence alignment - TraesCS4A01G329700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G329700 chr4A 100.000 3492 0 0 1 3492 614905939 614909430 0.000000e+00 6449.0
1 TraesCS4A01G329700 chr4A 94.816 2141 83 10 923 3052 615099528 615101651 0.000000e+00 3314.0
2 TraesCS4A01G329700 chr4A 94.820 1641 74 7 923 2554 615081599 615083237 0.000000e+00 2549.0
3 TraesCS4A01G329700 chr4A 94.644 1643 78 5 923 2556 615058802 615060443 0.000000e+00 2538.0
4 TraesCS4A01G329700 chr4A 95.009 1082 38 6 923 1988 614962995 614964076 0.000000e+00 1685.0
5 TraesCS4A01G329700 chr4A 92.346 810 34 4 1983 2792 614982742 614983523 0.000000e+00 1127.0
6 TraesCS4A01G329700 chr4A 93.387 620 35 2 1937 2556 615044510 615045123 0.000000e+00 913.0
7 TraesCS4A01G329700 chr4A 86.767 801 49 20 164 939 615057731 615058499 0.000000e+00 839.0
8 TraesCS4A01G329700 chr4A 86.534 802 49 22 164 939 615080528 615081296 0.000000e+00 828.0
9 TraesCS4A01G329700 chr4A 85.980 806 50 22 164 939 615098453 615099225 0.000000e+00 804.0
10 TraesCS4A01G329700 chr4A 84.436 816 51 26 153 939 614961925 614962693 0.000000e+00 734.0
11 TraesCS4A01G329700 chr4A 92.530 415 25 2 1937 2351 615052221 615052629 1.080000e-164 590.0
12 TraesCS4A01G329700 chr4A 83.846 260 30 6 2804 3052 614984162 614984420 1.620000e-58 237.0
13 TraesCS4A01G329700 chr4A 83.108 148 13 5 2933 3080 615178930 615179065 1.320000e-24 124.0
14 TraesCS4A01G329700 chr4A 92.424 66 5 0 2933 2998 615199758 615199823 1.030000e-15 95.3
15 TraesCS4A01G329700 chr5B 93.595 2342 98 19 751 3080 697172535 697174836 0.000000e+00 3446.0
16 TraesCS4A01G329700 chr5B 75.831 1655 303 57 965 2565 6603142 6601531 0.000000e+00 750.0
17 TraesCS4A01G329700 chr5B 99.031 413 3 1 3080 3492 450513723 450513312 0.000000e+00 739.0
18 TraesCS4A01G329700 chr5B 98.789 413 4 1 3080 3492 690404732 690404321 0.000000e+00 734.0
19 TraesCS4A01G329700 chr5B 84.769 650 40 26 153 752 697171767 697172407 6.450000e-167 597.0
20 TraesCS4A01G329700 chr5B 90.566 371 28 4 2425 2792 697333099 697333465 5.240000e-133 484.0
21 TraesCS4A01G329700 chr5B 83.402 241 29 5 2823 3052 697341248 697341488 2.730000e-51 213.0
22 TraesCS4A01G329700 chr5B 87.778 90 9 2 2926 3013 697609283 697609372 1.710000e-18 104.0
23 TraesCS4A01G329700 chr5B 90.000 80 7 1 2926 3004 697528176 697528255 6.170000e-18 102.0
24 TraesCS4A01G329700 chr5D 91.383 2553 111 37 153 2691 553627819 553625362 0.000000e+00 3395.0
25 TraesCS4A01G329700 chr5D 78.491 1060 166 38 1518 2531 6373488 6372445 3.800000e-179 638.0
26 TraesCS4A01G329700 chr5D 79.661 649 109 15 1073 1708 6493491 6492853 2.470000e-121 446.0
27 TraesCS4A01G329700 chr5D 81.597 288 38 8 2804 3080 553624387 553624104 1.260000e-54 224.0
28 TraesCS4A01G329700 chr5D 92.929 99 3 3 2986 3080 553476188 553476090 1.310000e-29 141.0
29 TraesCS4A01G329700 chr5D 87.302 126 9 4 2669 2792 553624616 553624496 1.690000e-28 137.0
30 TraesCS4A01G329700 chr5D 90.000 90 6 2 1763 1849 6712535 6712446 2.850000e-21 113.0
31 TraesCS4A01G329700 chr4B 99.274 413 2 1 3080 3492 229178906 229178495 0.000000e+00 745.0
32 TraesCS4A01G329700 chr1B 99.274 413 2 1 3080 3492 43265901 43266312 0.000000e+00 745.0
33 TraesCS4A01G329700 chr1B 99.031 413 3 1 3080 3492 530730562 530730973 0.000000e+00 739.0
34 TraesCS4A01G329700 chr3B 99.031 413 4 0 3080 3492 469631173 469631585 0.000000e+00 741.0
35 TraesCS4A01G329700 chr3B 99.031 413 3 1 3080 3492 829743253 829742842 0.000000e+00 739.0
36 TraesCS4A01G329700 chr3B 86.765 68 9 0 1739 1806 820333839 820333772 3.740000e-10 76.8
37 TraesCS4A01G329700 chr2A 99.031 413 3 1 3080 3492 761284122 761283711 0.000000e+00 739.0
38 TraesCS4A01G329700 chr2A 98.789 413 4 1 3080 3492 185636688 185636277 0.000000e+00 734.0
39 TraesCS4A01G329700 chr5A 75.542 1660 267 69 970 2556 3422956 3421363 0.000000e+00 688.0
40 TraesCS4A01G329700 chr5A 79.070 645 112 16 1077 1708 3158557 3159191 4.170000e-114 422.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G329700 chr4A 614905939 614909430 3491 False 6449.0 6449 100.000000 1 3492 1 chr4A.!!$F1 3491
1 TraesCS4A01G329700 chr4A 615098453 615101651 3198 False 2059.0 3314 90.398000 164 3052 2 chr4A.!!$F10 2888
2 TraesCS4A01G329700 chr4A 615057731 615060443 2712 False 1688.5 2538 90.705500 164 2556 2 chr4A.!!$F8 2392
3 TraesCS4A01G329700 chr4A 615080528 615083237 2709 False 1688.5 2549 90.677000 164 2554 2 chr4A.!!$F9 2390
4 TraesCS4A01G329700 chr4A 614961925 614964076 2151 False 1209.5 1685 89.722500 153 1988 2 chr4A.!!$F6 1835
5 TraesCS4A01G329700 chr4A 615044510 615045123 613 False 913.0 913 93.387000 1937 2556 1 chr4A.!!$F2 619
6 TraesCS4A01G329700 chr4A 614982742 614984420 1678 False 682.0 1127 88.096000 1983 3052 2 chr4A.!!$F7 1069
7 TraesCS4A01G329700 chr5B 697171767 697174836 3069 False 2021.5 3446 89.182000 153 3080 2 chr5B.!!$F5 2927
8 TraesCS4A01G329700 chr5B 6601531 6603142 1611 True 750.0 750 75.831000 965 2565 1 chr5B.!!$R1 1600
9 TraesCS4A01G329700 chr5D 553624104 553627819 3715 True 1252.0 3395 86.760667 153 3080 3 chr5D.!!$R5 2927
10 TraesCS4A01G329700 chr5D 6372445 6373488 1043 True 638.0 638 78.491000 1518 2531 1 chr5D.!!$R1 1013
11 TraesCS4A01G329700 chr5D 6492853 6493491 638 True 446.0 446 79.661000 1073 1708 1 chr5D.!!$R2 635
12 TraesCS4A01G329700 chr5A 3421363 3422956 1593 True 688.0 688 75.542000 970 2556 1 chr5A.!!$R1 1586
13 TraesCS4A01G329700 chr5A 3158557 3159191 634 False 422.0 422 79.070000 1077 1708 1 chr5A.!!$F1 631

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
23 24 0.034089 CCTGAAATCGCCTTTCCCCT 60.034 55.0 7.53 0.0 42.23 4.79 F
687 745 0.105964 TGTTTGCAGGTCAGTACGCT 59.894 50.0 0.00 0.0 0.00 5.07 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1176 1715 0.031585 TGCGGATGTATGGCGTAGAC 59.968 55.000 0.0 0.0 0.0 2.59 R
2620 3294 1.920325 CTTGACCCAGCCTCCTCCA 60.920 63.158 0.0 0.0 0.0 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.982612 GCAACCTGAAATCGCCTTTC 58.017 50.000 4.02 4.02 43.05 2.62
20 21 1.402852 GCAACCTGAAATCGCCTTTCC 60.403 52.381 7.53 0.00 42.23 3.13
21 22 1.202348 CAACCTGAAATCGCCTTTCCC 59.798 52.381 7.53 0.00 42.23 3.97
22 23 0.323451 ACCTGAAATCGCCTTTCCCC 60.323 55.000 7.53 0.00 42.23 4.81
23 24 0.034089 CCTGAAATCGCCTTTCCCCT 60.034 55.000 7.53 0.00 42.23 4.79
24 25 1.616994 CCTGAAATCGCCTTTCCCCTT 60.617 52.381 7.53 0.00 42.23 3.95
25 26 2.171003 CTGAAATCGCCTTTCCCCTTT 58.829 47.619 7.53 0.00 42.23 3.11
26 27 2.562738 CTGAAATCGCCTTTCCCCTTTT 59.437 45.455 7.53 0.00 42.23 2.27
27 28 2.298729 TGAAATCGCCTTTCCCCTTTTG 59.701 45.455 7.53 0.00 42.23 2.44
28 29 2.009681 AATCGCCTTTCCCCTTTTGT 57.990 45.000 0.00 0.00 0.00 2.83
29 30 1.256812 ATCGCCTTTCCCCTTTTGTG 58.743 50.000 0.00 0.00 0.00 3.33
30 31 0.106419 TCGCCTTTCCCCTTTTGTGT 60.106 50.000 0.00 0.00 0.00 3.72
31 32 1.143277 TCGCCTTTCCCCTTTTGTGTA 59.857 47.619 0.00 0.00 0.00 2.90
32 33 1.268625 CGCCTTTCCCCTTTTGTGTAC 59.731 52.381 0.00 0.00 0.00 2.90
33 34 1.616865 GCCTTTCCCCTTTTGTGTACC 59.383 52.381 0.00 0.00 0.00 3.34
34 35 2.952116 CCTTTCCCCTTTTGTGTACCA 58.048 47.619 0.00 0.00 0.00 3.25
35 36 2.890945 CCTTTCCCCTTTTGTGTACCAG 59.109 50.000 0.00 0.00 0.00 4.00
36 37 2.668144 TTCCCCTTTTGTGTACCAGG 57.332 50.000 0.00 0.00 0.00 4.45
37 38 0.774908 TCCCCTTTTGTGTACCAGGG 59.225 55.000 0.00 0.00 45.27 4.45
41 42 3.059352 CCTTTTGTGTACCAGGGAGAG 57.941 52.381 0.00 0.00 0.00 3.20
42 43 2.290323 CCTTTTGTGTACCAGGGAGAGG 60.290 54.545 0.00 0.00 0.00 3.69
43 44 1.358152 TTTGTGTACCAGGGAGAGGG 58.642 55.000 0.00 0.00 0.00 4.30
44 45 0.490017 TTGTGTACCAGGGAGAGGGA 59.510 55.000 0.00 0.00 0.00 4.20
45 46 0.716591 TGTGTACCAGGGAGAGGGAT 59.283 55.000 0.00 0.00 0.00 3.85
46 47 1.080498 TGTGTACCAGGGAGAGGGATT 59.920 52.381 0.00 0.00 0.00 3.01
47 48 1.486726 GTGTACCAGGGAGAGGGATTG 59.513 57.143 0.00 0.00 0.00 2.67
48 49 1.364678 TGTACCAGGGAGAGGGATTGA 59.635 52.381 0.00 0.00 0.00 2.57
49 50 2.043227 GTACCAGGGAGAGGGATTGAG 58.957 57.143 0.00 0.00 0.00 3.02
50 51 0.327000 ACCAGGGAGAGGGATTGAGG 60.327 60.000 0.00 0.00 0.00 3.86
51 52 0.327000 CCAGGGAGAGGGATTGAGGT 60.327 60.000 0.00 0.00 0.00 3.85
52 53 0.835941 CAGGGAGAGGGATTGAGGTG 59.164 60.000 0.00 0.00 0.00 4.00
53 54 0.419459 AGGGAGAGGGATTGAGGTGT 59.581 55.000 0.00 0.00 0.00 4.16
54 55 1.203492 AGGGAGAGGGATTGAGGTGTT 60.203 52.381 0.00 0.00 0.00 3.32
55 56 1.065126 GGGAGAGGGATTGAGGTGTTG 60.065 57.143 0.00 0.00 0.00 3.33
56 57 1.630878 GGAGAGGGATTGAGGTGTTGT 59.369 52.381 0.00 0.00 0.00 3.32
57 58 2.040412 GGAGAGGGATTGAGGTGTTGTT 59.960 50.000 0.00 0.00 0.00 2.83
58 59 3.263425 GGAGAGGGATTGAGGTGTTGTTA 59.737 47.826 0.00 0.00 0.00 2.41
59 60 4.508662 GAGAGGGATTGAGGTGTTGTTAG 58.491 47.826 0.00 0.00 0.00 2.34
60 61 4.168101 AGAGGGATTGAGGTGTTGTTAGA 58.832 43.478 0.00 0.00 0.00 2.10
61 62 4.597507 AGAGGGATTGAGGTGTTGTTAGAA 59.402 41.667 0.00 0.00 0.00 2.10
62 63 5.251700 AGAGGGATTGAGGTGTTGTTAGAAT 59.748 40.000 0.00 0.00 0.00 2.40
63 64 5.892348 AGGGATTGAGGTGTTGTTAGAATT 58.108 37.500 0.00 0.00 0.00 2.17
64 65 6.314917 AGGGATTGAGGTGTTGTTAGAATTT 58.685 36.000 0.00 0.00 0.00 1.82
65 66 6.782494 AGGGATTGAGGTGTTGTTAGAATTTT 59.218 34.615 0.00 0.00 0.00 1.82
66 67 7.947890 AGGGATTGAGGTGTTGTTAGAATTTTA 59.052 33.333 0.00 0.00 0.00 1.52
67 68 8.749354 GGGATTGAGGTGTTGTTAGAATTTTAT 58.251 33.333 0.00 0.00 0.00 1.40
68 69 9.788960 GGATTGAGGTGTTGTTAGAATTTTATC 57.211 33.333 0.00 0.00 0.00 1.75
73 74 9.626045 GAGGTGTTGTTAGAATTTTATCTTTGG 57.374 33.333 0.00 0.00 0.00 3.28
74 75 9.143155 AGGTGTTGTTAGAATTTTATCTTTGGT 57.857 29.630 0.00 0.00 0.00 3.67
75 76 9.758651 GGTGTTGTTAGAATTTTATCTTTGGTT 57.241 29.630 0.00 0.00 0.00 3.67
77 78 9.255304 TGTTGTTAGAATTTTATCTTTGGTTGC 57.745 29.630 0.00 0.00 0.00 4.17
78 79 9.255304 GTTGTTAGAATTTTATCTTTGGTTGCA 57.745 29.630 0.00 0.00 0.00 4.08
79 80 9.823647 TTGTTAGAATTTTATCTTTGGTTGCAA 57.176 25.926 0.00 0.00 0.00 4.08
80 81 9.823647 TGTTAGAATTTTATCTTTGGTTGCAAA 57.176 25.926 0.00 0.00 0.00 3.68
94 95 4.178545 GTTGCAAACTGATTACCATGCT 57.821 40.909 0.00 0.00 45.32 3.79
95 96 4.559153 GTTGCAAACTGATTACCATGCTT 58.441 39.130 0.00 0.00 45.32 3.91
96 97 4.870123 TGCAAACTGATTACCATGCTTT 57.130 36.364 0.00 0.00 34.97 3.51
97 98 4.558178 TGCAAACTGATTACCATGCTTTG 58.442 39.130 0.00 0.00 34.97 2.77
98 99 3.368843 GCAAACTGATTACCATGCTTTGC 59.631 43.478 0.00 0.00 34.92 3.68
99 100 4.813027 CAAACTGATTACCATGCTTTGCT 58.187 39.130 0.00 0.00 0.00 3.91
100 101 4.445452 AACTGATTACCATGCTTTGCTG 57.555 40.909 0.00 0.00 0.00 4.41
101 102 3.424703 ACTGATTACCATGCTTTGCTGT 58.575 40.909 0.00 0.00 0.00 4.40
102 103 4.588899 ACTGATTACCATGCTTTGCTGTA 58.411 39.130 0.00 0.00 0.00 2.74
103 104 4.637534 ACTGATTACCATGCTTTGCTGTAG 59.362 41.667 0.00 0.00 0.00 2.74
104 105 3.378112 TGATTACCATGCTTTGCTGTAGC 59.622 43.478 0.00 0.00 42.50 3.58
121 122 6.861065 CTGTAGCACAGTTCTTCCTTTTAA 57.139 37.500 7.80 0.00 41.19 1.52
122 123 7.440523 CTGTAGCACAGTTCTTCCTTTTAAT 57.559 36.000 7.80 0.00 41.19 1.40
123 124 8.547967 CTGTAGCACAGTTCTTCCTTTTAATA 57.452 34.615 7.80 0.00 41.19 0.98
124 125 8.319143 TGTAGCACAGTTCTTCCTTTTAATAC 57.681 34.615 0.00 0.00 0.00 1.89
125 126 8.154856 TGTAGCACAGTTCTTCCTTTTAATACT 58.845 33.333 0.00 0.00 0.00 2.12
126 127 7.674471 AGCACAGTTCTTCCTTTTAATACTC 57.326 36.000 0.00 0.00 0.00 2.59
127 128 7.224297 AGCACAGTTCTTCCTTTTAATACTCA 58.776 34.615 0.00 0.00 0.00 3.41
128 129 7.885399 AGCACAGTTCTTCCTTTTAATACTCAT 59.115 33.333 0.00 0.00 0.00 2.90
129 130 8.178313 GCACAGTTCTTCCTTTTAATACTCATC 58.822 37.037 0.00 0.00 0.00 2.92
130 131 9.219603 CACAGTTCTTCCTTTTAATACTCATCA 57.780 33.333 0.00 0.00 0.00 3.07
131 132 9.793259 ACAGTTCTTCCTTTTAATACTCATCAA 57.207 29.630 0.00 0.00 0.00 2.57
137 138 9.727627 CTTCCTTTTAATACTCATCAAAGATGC 57.272 33.333 2.19 0.00 0.00 3.91
138 139 8.225603 TCCTTTTAATACTCATCAAAGATGCC 57.774 34.615 2.19 0.00 0.00 4.40
139 140 7.285401 TCCTTTTAATACTCATCAAAGATGCCC 59.715 37.037 2.19 0.00 0.00 5.36
140 141 6.959639 TTTAATACTCATCAAAGATGCCCC 57.040 37.500 2.19 0.00 0.00 5.80
141 142 4.803329 AATACTCATCAAAGATGCCCCT 57.197 40.909 2.19 0.00 0.00 4.79
142 143 2.725221 ACTCATCAAAGATGCCCCTC 57.275 50.000 2.19 0.00 0.00 4.30
143 144 1.918262 ACTCATCAAAGATGCCCCTCA 59.082 47.619 2.19 0.00 0.00 3.86
144 145 2.309755 ACTCATCAAAGATGCCCCTCAA 59.690 45.455 2.19 0.00 0.00 3.02
145 146 3.245371 ACTCATCAAAGATGCCCCTCAAA 60.245 43.478 2.19 0.00 0.00 2.69
146 147 3.765511 CTCATCAAAGATGCCCCTCAAAA 59.234 43.478 2.19 0.00 0.00 2.44
147 148 4.158786 TCATCAAAGATGCCCCTCAAAAA 58.841 39.130 2.19 0.00 0.00 1.94
271 272 5.294306 CCAGCTTACGTTGTCAATCATACAT 59.706 40.000 0.00 0.00 0.00 2.29
307 311 2.101582 ACACTCGGCCTGTTATCATCTC 59.898 50.000 0.00 0.00 0.00 2.75
332 336 3.463048 AAAGGATGCCACTTCTGGATT 57.537 42.857 0.00 0.00 40.55 3.01
520 556 2.846193 TGGACCTGAACAACTGCTTAC 58.154 47.619 0.00 0.00 0.00 2.34
541 577 2.359531 CGAAACAAAACTGGCCCAGTAA 59.640 45.455 18.61 0.00 44.62 2.24
542 578 3.713288 GAAACAAAACTGGCCCAGTAAC 58.287 45.455 18.61 0.36 44.62 2.50
543 579 1.314730 ACAAAACTGGCCCAGTAACG 58.685 50.000 18.61 10.65 44.62 3.18
544 580 1.314730 CAAAACTGGCCCAGTAACGT 58.685 50.000 18.61 0.00 44.62 3.99
687 745 0.105964 TGTTTGCAGGTCAGTACGCT 59.894 50.000 0.00 0.00 0.00 5.07
712 773 7.969536 TTCCTTTAGTTTCTTCTCAGTCATG 57.030 36.000 0.00 0.00 0.00 3.07
724 785 5.039920 TCTCAGTCATGGTAATGGGAATG 57.960 43.478 0.00 0.00 34.30 2.67
730 791 2.295269 TGGTAATGGGAATGGGAGGA 57.705 50.000 0.00 0.00 0.00 3.71
868 1075 1.136891 TCTGTGCATGATTCGATCGGT 59.863 47.619 16.41 4.28 0.00 4.69
904 1111 8.887717 GCTAGATTGAAATCTTGTCTTGTACAT 58.112 33.333 10.66 0.00 42.96 2.29
920 1127 6.479990 TCTTGTACATAGAAATGGCTCGATTG 59.520 38.462 0.00 0.00 37.43 2.67
921 1128 5.056480 TGTACATAGAAATGGCTCGATTGG 58.944 41.667 0.00 0.00 37.43 3.16
926 1133 4.422073 AGAAATGGCTCGATTGGTATGA 57.578 40.909 0.00 0.00 0.00 2.15
989 1528 1.952296 CTGGATTCATGCAGCTAACCC 59.048 52.381 0.00 0.00 39.36 4.11
1031 1570 2.093973 CAGCATCTACTCCCTGTCGTTT 60.094 50.000 0.00 0.00 0.00 3.60
1203 1742 1.338105 CCATACATCCGCATCGACCAT 60.338 52.381 0.00 0.00 0.00 3.55
1574 2135 0.615331 TCATCCAGGTCACTCAAGGC 59.385 55.000 0.00 0.00 0.00 4.35
1609 2170 1.410004 CTGCCTTATCACCGGGAGTA 58.590 55.000 6.32 0.00 34.44 2.59
1849 2438 7.100409 TCACATCCATACACGTTTAGATGAAA 58.900 34.615 14.45 3.53 36.01 2.69
2149 2768 1.578618 GATTTCGACGCGCTGCTTG 60.579 57.895 5.73 0.00 0.00 4.01
2325 2974 7.587629 CAATGTATAAGGTACATGCATTCTGG 58.412 38.462 0.00 0.00 36.82 3.86
2534 3208 1.817740 GCACCTGCCACCTTAGAACAA 60.818 52.381 0.00 0.00 34.31 2.83
2659 3333 2.676748 CTCCCTGCTCCTGTATCTCTT 58.323 52.381 0.00 0.00 0.00 2.85
2716 4157 1.517242 GAGCCCTCACAAAGACACTG 58.483 55.000 0.00 0.00 0.00 3.66
2730 4173 0.751643 ACACTGTGTTGAACTGGGCC 60.752 55.000 7.80 0.00 34.59 5.80
2803 4888 8.682710 GCCTGAAATAGTTACATGTTTCCATTA 58.317 33.333 2.30 0.00 31.42 1.90
2818 4903 5.835113 TTCCATTATTTGCCAAGTCTAGC 57.165 39.130 0.00 0.00 0.00 3.42
3080 5180 7.133891 ACAGTACAATGCATTCAGAGTAAAC 57.866 36.000 9.53 1.08 0.00 2.01
3081 5181 6.149474 ACAGTACAATGCATTCAGAGTAAACC 59.851 38.462 9.53 0.00 0.00 3.27
3082 5182 5.648092 AGTACAATGCATTCAGAGTAAACCC 59.352 40.000 9.53 0.00 0.00 4.11
3083 5183 3.440173 ACAATGCATTCAGAGTAAACCCG 59.560 43.478 9.53 0.00 0.00 5.28
3084 5184 2.107950 TGCATTCAGAGTAAACCCGG 57.892 50.000 0.00 0.00 0.00 5.73
3085 5185 1.339631 TGCATTCAGAGTAAACCCGGG 60.340 52.381 22.25 22.25 0.00 5.73
3086 5186 1.379527 CATTCAGAGTAAACCCGGGC 58.620 55.000 24.08 3.45 0.00 6.13
3087 5187 0.255033 ATTCAGAGTAAACCCGGGCC 59.745 55.000 24.08 6.12 0.00 5.80
3088 5188 0.838987 TTCAGAGTAAACCCGGGCCT 60.839 55.000 24.08 11.76 0.00 5.19
3089 5189 1.221021 CAGAGTAAACCCGGGCCTC 59.779 63.158 24.08 20.09 0.00 4.70
3090 5190 1.229400 AGAGTAAACCCGGGCCTCA 60.229 57.895 24.08 0.00 0.00 3.86
3091 5191 1.078637 GAGTAAACCCGGGCCTCAC 60.079 63.158 24.08 13.84 0.00 3.51
3092 5192 1.538135 AGTAAACCCGGGCCTCACT 60.538 57.895 24.08 16.09 0.00 3.41
3093 5193 0.252375 AGTAAACCCGGGCCTCACTA 60.252 55.000 24.08 0.00 0.00 2.74
3094 5194 0.835276 GTAAACCCGGGCCTCACTAT 59.165 55.000 24.08 0.00 0.00 2.12
3095 5195 1.125633 TAAACCCGGGCCTCACTATC 58.874 55.000 24.08 0.00 0.00 2.08
3096 5196 1.632965 AAACCCGGGCCTCACTATCC 61.633 60.000 24.08 0.00 0.00 2.59
3097 5197 2.122813 CCCGGGCCTCACTATCCT 60.123 66.667 8.08 0.00 0.00 3.24
3098 5198 1.155390 CCCGGGCCTCACTATCCTA 59.845 63.158 8.08 0.00 0.00 2.94
3099 5199 0.471211 CCCGGGCCTCACTATCCTAA 60.471 60.000 8.08 0.00 0.00 2.69
3100 5200 0.680061 CCGGGCCTCACTATCCTAAC 59.320 60.000 0.84 0.00 0.00 2.34
3101 5201 0.314302 CGGGCCTCACTATCCTAACG 59.686 60.000 0.84 0.00 0.00 3.18
3102 5202 0.033642 GGGCCTCACTATCCTAACGC 59.966 60.000 0.84 0.00 0.00 4.84
3103 5203 1.041437 GGCCTCACTATCCTAACGCT 58.959 55.000 0.00 0.00 0.00 5.07
3104 5204 1.000052 GGCCTCACTATCCTAACGCTC 60.000 57.143 0.00 0.00 0.00 5.03
3105 5205 1.000052 GCCTCACTATCCTAACGCTCC 60.000 57.143 0.00 0.00 0.00 4.70
3106 5206 2.307768 CCTCACTATCCTAACGCTCCA 58.692 52.381 0.00 0.00 0.00 3.86
3107 5207 2.894126 CCTCACTATCCTAACGCTCCAT 59.106 50.000 0.00 0.00 0.00 3.41
3108 5208 3.322254 CCTCACTATCCTAACGCTCCATT 59.678 47.826 0.00 0.00 0.00 3.16
3109 5209 4.302455 CTCACTATCCTAACGCTCCATTG 58.698 47.826 0.00 0.00 0.00 2.82
3110 5210 3.704566 TCACTATCCTAACGCTCCATTGT 59.295 43.478 0.00 0.00 0.00 2.71
3111 5211 4.161565 TCACTATCCTAACGCTCCATTGTT 59.838 41.667 0.00 0.00 0.00 2.83
3112 5212 4.271049 CACTATCCTAACGCTCCATTGTTG 59.729 45.833 0.00 0.00 0.00 3.33
3113 5213 1.448985 TCCTAACGCTCCATTGTTGC 58.551 50.000 0.00 0.00 0.00 4.17
3114 5214 1.003118 TCCTAACGCTCCATTGTTGCT 59.997 47.619 0.00 0.00 0.00 3.91
3115 5215 1.812571 CCTAACGCTCCATTGTTGCTT 59.187 47.619 0.00 0.00 0.00 3.91
3116 5216 2.228822 CCTAACGCTCCATTGTTGCTTT 59.771 45.455 0.00 0.00 0.00 3.51
3117 5217 2.138596 AACGCTCCATTGTTGCTTTG 57.861 45.000 0.00 0.00 0.00 2.77
3118 5218 1.317613 ACGCTCCATTGTTGCTTTGA 58.682 45.000 0.00 0.00 0.00 2.69
3119 5219 1.267806 ACGCTCCATTGTTGCTTTGAG 59.732 47.619 0.00 0.00 0.00 3.02
3120 5220 1.536766 CGCTCCATTGTTGCTTTGAGA 59.463 47.619 0.00 0.00 0.00 3.27
3121 5221 2.163010 CGCTCCATTGTTGCTTTGAGAT 59.837 45.455 0.00 0.00 0.00 2.75
3122 5222 3.730061 CGCTCCATTGTTGCTTTGAGATC 60.730 47.826 0.00 0.00 0.00 2.75
3123 5223 3.442977 GCTCCATTGTTGCTTTGAGATCT 59.557 43.478 0.00 0.00 0.00 2.75
3124 5224 4.674623 GCTCCATTGTTGCTTTGAGATCTG 60.675 45.833 0.00 0.00 0.00 2.90
3125 5225 4.401022 TCCATTGTTGCTTTGAGATCTGT 58.599 39.130 0.00 0.00 0.00 3.41
3126 5226 4.216902 TCCATTGTTGCTTTGAGATCTGTG 59.783 41.667 0.00 0.00 0.00 3.66
3127 5227 3.631145 TTGTTGCTTTGAGATCTGTGC 57.369 42.857 0.00 0.00 0.00 4.57
3128 5228 2.854963 TGTTGCTTTGAGATCTGTGCT 58.145 42.857 0.00 0.00 0.00 4.40
3129 5229 4.006780 TGTTGCTTTGAGATCTGTGCTA 57.993 40.909 0.00 0.00 0.00 3.49
3130 5230 3.748048 TGTTGCTTTGAGATCTGTGCTAC 59.252 43.478 0.00 6.70 0.00 3.58
3131 5231 3.683365 TGCTTTGAGATCTGTGCTACA 57.317 42.857 0.00 0.00 0.00 2.74
3132 5232 3.329386 TGCTTTGAGATCTGTGCTACAC 58.671 45.455 0.00 0.00 34.56 2.90
3133 5233 3.244181 TGCTTTGAGATCTGTGCTACACA 60.244 43.478 0.00 0.00 42.45 3.72
3134 5234 3.748048 GCTTTGAGATCTGTGCTACACAA 59.252 43.478 0.00 0.00 44.08 3.33
3135 5235 4.377841 GCTTTGAGATCTGTGCTACACAAC 60.378 45.833 0.00 0.00 44.08 3.32
3136 5236 4.607293 TTGAGATCTGTGCTACACAACT 57.393 40.909 0.00 2.36 44.08 3.16
3137 5237 5.722021 TTGAGATCTGTGCTACACAACTA 57.278 39.130 0.00 0.00 44.08 2.24
3138 5238 5.060662 TGAGATCTGTGCTACACAACTAC 57.939 43.478 0.00 0.00 44.08 2.73
3139 5239 4.082190 TGAGATCTGTGCTACACAACTACC 60.082 45.833 0.00 0.00 44.08 3.18
3140 5240 4.090090 AGATCTGTGCTACACAACTACCT 58.910 43.478 0.00 0.00 44.08 3.08
3141 5241 4.528596 AGATCTGTGCTACACAACTACCTT 59.471 41.667 0.00 0.00 44.08 3.50
3142 5242 5.715279 AGATCTGTGCTACACAACTACCTTA 59.285 40.000 0.00 0.00 44.08 2.69
3143 5243 5.995565 TCTGTGCTACACAACTACCTTAT 57.004 39.130 1.64 0.00 44.08 1.73
3144 5244 6.354794 TCTGTGCTACACAACTACCTTATT 57.645 37.500 1.64 0.00 44.08 1.40
3145 5245 7.470935 TCTGTGCTACACAACTACCTTATTA 57.529 36.000 1.64 0.00 44.08 0.98
3146 5246 7.318141 TCTGTGCTACACAACTACCTTATTAC 58.682 38.462 1.64 0.00 44.08 1.89
3147 5247 6.995364 TGTGCTACACAACTACCTTATTACA 58.005 36.000 0.00 0.00 41.69 2.41
3148 5248 7.617225 TGTGCTACACAACTACCTTATTACAT 58.383 34.615 0.00 0.00 41.69 2.29
3149 5249 7.547722 TGTGCTACACAACTACCTTATTACATG 59.452 37.037 0.00 0.00 41.69 3.21
3150 5250 7.011109 GTGCTACACAACTACCTTATTACATGG 59.989 40.741 0.00 0.00 34.08 3.66
3151 5251 7.093245 TGCTACACAACTACCTTATTACATGGA 60.093 37.037 0.00 0.00 0.00 3.41
3152 5252 7.767198 GCTACACAACTACCTTATTACATGGAA 59.233 37.037 0.00 0.00 0.00 3.53
3153 5253 9.832445 CTACACAACTACCTTATTACATGGAAT 57.168 33.333 8.55 8.55 0.00 3.01
3155 5255 9.528489 ACACAACTACCTTATTACATGGAATTT 57.472 29.630 8.85 0.00 0.00 1.82
3189 5289 9.739276 TTTGTTCCTCTCATATAAAACATGTCT 57.261 29.630 0.00 0.00 0.00 3.41
3190 5290 9.739276 TTGTTCCTCTCATATAAAACATGTCTT 57.261 29.630 0.00 0.00 0.00 3.01
3191 5291 9.166173 TGTTCCTCTCATATAAAACATGTCTTG 57.834 33.333 0.00 0.00 0.00 3.02
3192 5292 9.383519 GTTCCTCTCATATAAAACATGTCTTGA 57.616 33.333 0.00 0.00 0.00 3.02
3193 5293 9.958180 TTCCTCTCATATAAAACATGTCTTGAA 57.042 29.630 0.00 0.00 0.00 2.69
3194 5294 9.383519 TCCTCTCATATAAAACATGTCTTGAAC 57.616 33.333 0.00 0.00 0.00 3.18
3195 5295 9.388506 CCTCTCATATAAAACATGTCTTGAACT 57.611 33.333 0.00 0.00 0.00 3.01
3204 5304 8.831715 AAAACATGTCTTGAACTTCAAACTTT 57.168 26.923 0.00 2.89 35.73 2.66
3205 5305 7.816945 AACATGTCTTGAACTTCAAACTTTG 57.183 32.000 0.00 10.13 35.73 2.77
3206 5306 5.807011 ACATGTCTTGAACTTCAAACTTTGC 59.193 36.000 5.72 0.00 35.73 3.68
3207 5307 5.384063 TGTCTTGAACTTCAAACTTTGCA 57.616 34.783 5.72 0.00 35.73 4.08
3208 5308 5.401550 TGTCTTGAACTTCAAACTTTGCAG 58.598 37.500 5.72 0.17 35.73 4.41
3209 5309 5.048083 TGTCTTGAACTTCAAACTTTGCAGT 60.048 36.000 5.72 1.39 38.79 4.40
3210 5310 6.150307 TGTCTTGAACTTCAAACTTTGCAGTA 59.850 34.615 7.16 0.00 36.12 2.74
3211 5311 6.469275 GTCTTGAACTTCAAACTTTGCAGTAC 59.531 38.462 7.16 0.00 36.12 2.73
3212 5312 5.888691 TGAACTTCAAACTTTGCAGTACA 57.111 34.783 7.16 0.00 36.12 2.90
3213 5313 6.260870 TGAACTTCAAACTTTGCAGTACAA 57.739 33.333 7.16 0.00 36.12 2.41
3214 5314 6.090129 TGAACTTCAAACTTTGCAGTACAAC 58.910 36.000 7.16 2.19 36.12 3.32
3215 5315 5.637006 ACTTCAAACTTTGCAGTACAACA 57.363 34.783 5.14 0.00 35.39 3.33
3216 5316 6.207691 ACTTCAAACTTTGCAGTACAACAT 57.792 33.333 5.14 0.00 35.39 2.71
3217 5317 7.328277 ACTTCAAACTTTGCAGTACAACATA 57.672 32.000 5.14 0.00 35.39 2.29
3218 5318 7.767261 ACTTCAAACTTTGCAGTACAACATAA 58.233 30.769 5.14 0.00 35.39 1.90
3219 5319 7.700656 ACTTCAAACTTTGCAGTACAACATAAC 59.299 33.333 5.14 0.00 35.39 1.89
3220 5320 7.328277 TCAAACTTTGCAGTACAACATAACT 57.672 32.000 0.00 0.00 38.23 2.24
3221 5321 7.767261 TCAAACTTTGCAGTACAACATAACTT 58.233 30.769 0.00 0.00 38.23 2.66
3222 5322 8.247562 TCAAACTTTGCAGTACAACATAACTTT 58.752 29.630 0.00 0.00 38.23 2.66
3223 5323 7.985634 AACTTTGCAGTACAACATAACTTTG 57.014 32.000 0.00 0.00 38.23 2.77
3224 5324 7.095695 ACTTTGCAGTACAACATAACTTTGT 57.904 32.000 0.00 0.00 38.23 2.83
3225 5325 8.215926 ACTTTGCAGTACAACATAACTTTGTA 57.784 30.769 0.00 0.00 38.23 2.41
3226 5326 8.679100 ACTTTGCAGTACAACATAACTTTGTAA 58.321 29.630 0.00 0.00 40.30 2.41
3227 5327 8.844441 TTTGCAGTACAACATAACTTTGTAAC 57.156 30.769 0.00 0.00 40.30 2.50
3228 5328 7.795482 TGCAGTACAACATAACTTTGTAACT 57.205 32.000 0.00 0.00 40.30 2.24
3229 5329 8.890124 TGCAGTACAACATAACTTTGTAACTA 57.110 30.769 0.00 0.00 40.30 2.24
3230 5330 8.984764 TGCAGTACAACATAACTTTGTAACTAG 58.015 33.333 0.00 0.00 40.30 2.57
3231 5331 9.199982 GCAGTACAACATAACTTTGTAACTAGA 57.800 33.333 0.00 0.00 40.30 2.43
3360 5460 9.533831 AAATCTGTAAGTTTTATCCCACATTCT 57.466 29.630 0.00 0.00 34.30 2.40
3362 5462 9.614792 ATCTGTAAGTTTTATCCCACATTCTAC 57.385 33.333 0.00 0.00 33.76 2.59
3363 5463 8.598916 TCTGTAAGTTTTATCCCACATTCTACA 58.401 33.333 0.00 0.00 33.76 2.74
3364 5464 9.396022 CTGTAAGTTTTATCCCACATTCTACAT 57.604 33.333 0.00 0.00 0.00 2.29
3371 5471 8.677148 TTTATCCCACATTCTACATAGAAAGC 57.323 34.615 5.48 0.00 44.63 3.51
3372 5472 5.957771 TCCCACATTCTACATAGAAAGCT 57.042 39.130 5.48 0.00 44.63 3.74
3373 5473 6.313519 TCCCACATTCTACATAGAAAGCTT 57.686 37.500 5.48 0.00 44.63 3.74
3374 5474 6.721318 TCCCACATTCTACATAGAAAGCTTT 58.279 36.000 12.53 12.53 44.63 3.51
3375 5475 6.599244 TCCCACATTCTACATAGAAAGCTTTG 59.401 38.462 18.30 5.25 44.63 2.77
3376 5476 6.375455 CCCACATTCTACATAGAAAGCTTTGT 59.625 38.462 18.30 15.90 44.63 2.83
3377 5477 7.094205 CCCACATTCTACATAGAAAGCTTTGTT 60.094 37.037 18.30 7.23 44.63 2.83
3378 5478 7.752239 CCACATTCTACATAGAAAGCTTTGTTG 59.248 37.037 18.30 15.03 44.63 3.33
3379 5479 8.292448 CACATTCTACATAGAAAGCTTTGTTGT 58.708 33.333 18.30 19.36 44.63 3.32
3380 5480 8.292448 ACATTCTACATAGAAAGCTTTGTTGTG 58.708 33.333 18.30 16.43 44.63 3.33
3381 5481 6.241207 TCTACATAGAAAGCTTTGTTGTGC 57.759 37.500 18.30 0.25 37.47 4.57
3382 5482 5.997746 TCTACATAGAAAGCTTTGTTGTGCT 59.002 36.000 18.30 8.71 41.82 4.40
3383 5483 4.863491 ACATAGAAAGCTTTGTTGTGCTG 58.137 39.130 18.30 8.38 39.71 4.41
3384 5484 2.214387 AGAAAGCTTTGTTGTGCTGC 57.786 45.000 18.30 0.00 39.71 5.25
3385 5485 1.477700 AGAAAGCTTTGTTGTGCTGCA 59.522 42.857 18.30 0.00 39.71 4.41
3386 5486 2.094078 AGAAAGCTTTGTTGTGCTGCAA 60.094 40.909 18.30 0.00 39.71 4.08
3387 5487 2.383368 AAGCTTTGTTGTGCTGCAAA 57.617 40.000 2.77 0.00 39.71 3.68
3391 5491 3.644805 CTTTGTTGTGCTGCAAAGTTG 57.355 42.857 2.77 0.00 43.69 3.16
3392 5492 3.252400 CTTTGTTGTGCTGCAAAGTTGA 58.748 40.909 2.77 0.00 43.69 3.18
3393 5493 3.309961 TTGTTGTGCTGCAAAGTTGAA 57.690 38.095 2.77 0.00 39.03 2.69
3394 5494 3.309961 TGTTGTGCTGCAAAGTTGAAA 57.690 38.095 2.77 0.00 39.03 2.69
3395 5495 3.252400 TGTTGTGCTGCAAAGTTGAAAG 58.748 40.909 2.77 0.00 39.03 2.62
3396 5496 3.253230 GTTGTGCTGCAAAGTTGAAAGT 58.747 40.909 2.77 0.00 39.03 2.66
3397 5497 4.082517 TGTTGTGCTGCAAAGTTGAAAGTA 60.083 37.500 2.77 0.00 39.03 2.24
3398 5498 4.027572 TGTGCTGCAAAGTTGAAAGTAC 57.972 40.909 2.77 2.52 33.16 2.73
3399 5499 3.441922 TGTGCTGCAAAGTTGAAAGTACA 59.558 39.130 2.77 11.39 37.00 2.90
3400 5500 4.082517 TGTGCTGCAAAGTTGAAAGTACAA 60.083 37.500 2.77 0.00 36.69 2.41
3401 5501 4.862018 GTGCTGCAAAGTTGAAAGTACAAA 59.138 37.500 2.77 0.00 32.96 2.83
3402 5502 5.347364 GTGCTGCAAAGTTGAAAGTACAAAA 59.653 36.000 2.77 0.00 32.96 2.44
3403 5503 5.928839 TGCTGCAAAGTTGAAAGTACAAAAA 59.071 32.000 0.00 0.00 0.00 1.94
3404 5504 6.128688 TGCTGCAAAGTTGAAAGTACAAAAAC 60.129 34.615 0.00 0.00 0.00 2.43
3405 5505 6.128688 GCTGCAAAGTTGAAAGTACAAAAACA 60.129 34.615 0.00 0.00 0.00 2.83
3406 5506 7.412891 GCTGCAAAGTTGAAAGTACAAAAACAT 60.413 33.333 0.00 0.00 0.00 2.71
3407 5507 7.737395 TGCAAAGTTGAAAGTACAAAAACATG 58.263 30.769 0.00 0.00 0.00 3.21
3408 5508 7.386299 TGCAAAGTTGAAAGTACAAAAACATGT 59.614 29.630 0.00 0.00 37.32 3.21
3409 5509 8.227119 GCAAAGTTGAAAGTACAAAAACATGTT 58.773 29.630 4.92 4.92 34.75 2.71
3410 5510 9.739786 CAAAGTTGAAAGTACAAAAACATGTTC 57.260 29.630 12.39 0.00 34.75 3.18
3411 5511 9.705290 AAAGTTGAAAGTACAAAAACATGTTCT 57.295 25.926 12.39 0.00 33.04 3.01
3459 5559 9.573133 GAAAATTATTTTCACGAATCCTGATGT 57.427 29.630 21.33 0.00 46.34 3.06
3462 5562 9.613428 AATTATTTTCACGAATCCTGATGTAGA 57.387 29.630 0.00 0.00 0.00 2.59
3463 5563 9.613428 ATTATTTTCACGAATCCTGATGTAGAA 57.387 29.630 0.00 0.00 0.00 2.10
3464 5564 7.921786 ATTTTCACGAATCCTGATGTAGAAA 57.078 32.000 0.00 0.00 0.00 2.52
3465 5565 7.921786 TTTTCACGAATCCTGATGTAGAAAT 57.078 32.000 0.00 0.00 0.00 2.17
3466 5566 6.908870 TTCACGAATCCTGATGTAGAAATG 57.091 37.500 0.00 0.00 0.00 2.32
3467 5567 6.220726 TCACGAATCCTGATGTAGAAATGA 57.779 37.500 0.00 0.00 0.00 2.57
3468 5568 6.276091 TCACGAATCCTGATGTAGAAATGAG 58.724 40.000 0.00 0.00 0.00 2.90
3469 5569 6.045318 CACGAATCCTGATGTAGAAATGAGT 58.955 40.000 0.00 0.00 0.00 3.41
3470 5570 6.019237 CACGAATCCTGATGTAGAAATGAGTG 60.019 42.308 0.00 0.00 0.00 3.51
3471 5571 5.464722 CGAATCCTGATGTAGAAATGAGTGG 59.535 44.000 0.00 0.00 0.00 4.00
3472 5572 5.965033 ATCCTGATGTAGAAATGAGTGGT 57.035 39.130 0.00 0.00 0.00 4.16
3473 5573 5.762179 TCCTGATGTAGAAATGAGTGGTT 57.238 39.130 0.00 0.00 0.00 3.67
3474 5574 5.491070 TCCTGATGTAGAAATGAGTGGTTG 58.509 41.667 0.00 0.00 0.00 3.77
3475 5575 4.637534 CCTGATGTAGAAATGAGTGGTTGG 59.362 45.833 0.00 0.00 0.00 3.77
3476 5576 5.491070 CTGATGTAGAAATGAGTGGTTGGA 58.509 41.667 0.00 0.00 0.00 3.53
3477 5577 6.065976 TGATGTAGAAATGAGTGGTTGGAT 57.934 37.500 0.00 0.00 0.00 3.41
3478 5578 7.194112 TGATGTAGAAATGAGTGGTTGGATA 57.806 36.000 0.00 0.00 0.00 2.59
3479 5579 7.629157 TGATGTAGAAATGAGTGGTTGGATAA 58.371 34.615 0.00 0.00 0.00 1.75
3480 5580 7.770433 TGATGTAGAAATGAGTGGTTGGATAAG 59.230 37.037 0.00 0.00 0.00 1.73
3481 5581 6.414732 TGTAGAAATGAGTGGTTGGATAAGG 58.585 40.000 0.00 0.00 0.00 2.69
3482 5582 5.779241 AGAAATGAGTGGTTGGATAAGGA 57.221 39.130 0.00 0.00 0.00 3.36
3483 5583 5.749462 AGAAATGAGTGGTTGGATAAGGAG 58.251 41.667 0.00 0.00 0.00 3.69
3484 5584 5.251700 AGAAATGAGTGGTTGGATAAGGAGT 59.748 40.000 0.00 0.00 0.00 3.85
3485 5585 6.443849 AGAAATGAGTGGTTGGATAAGGAGTA 59.556 38.462 0.00 0.00 0.00 2.59
3486 5586 5.615925 ATGAGTGGTTGGATAAGGAGTAC 57.384 43.478 0.00 0.00 0.00 2.73
3487 5587 3.773119 TGAGTGGTTGGATAAGGAGTACC 59.227 47.826 0.00 0.00 0.00 3.34
3488 5588 3.113043 AGTGGTTGGATAAGGAGTACCC 58.887 50.000 0.00 0.00 36.73 3.69
3489 5589 2.112998 TGGTTGGATAAGGAGTACCCG 58.887 52.381 0.00 0.00 40.87 5.28
3490 5590 1.415289 GGTTGGATAAGGAGTACCCGG 59.585 57.143 0.00 0.00 40.87 5.73
3491 5591 1.415289 GTTGGATAAGGAGTACCCGGG 59.585 57.143 22.25 22.25 40.87 5.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.982612 GAAAGGCGATTTCAGGTTGC 58.017 50.000 7.86 0.00 45.63 4.17
7 8 2.299013 ACAAAAGGGGAAAGGCGATTTC 59.701 45.455 4.82 4.82 45.60 2.17
8 9 2.037121 CACAAAAGGGGAAAGGCGATTT 59.963 45.455 0.00 0.00 0.00 2.17
9 10 1.618343 CACAAAAGGGGAAAGGCGATT 59.382 47.619 0.00 0.00 0.00 3.34
10 11 1.256812 CACAAAAGGGGAAAGGCGAT 58.743 50.000 0.00 0.00 0.00 4.58
11 12 0.106419 ACACAAAAGGGGAAAGGCGA 60.106 50.000 0.00 0.00 0.00 5.54
12 13 1.268625 GTACACAAAAGGGGAAAGGCG 59.731 52.381 0.00 0.00 0.00 5.52
13 14 1.616865 GGTACACAAAAGGGGAAAGGC 59.383 52.381 0.00 0.00 0.00 4.35
14 15 2.890945 CTGGTACACAAAAGGGGAAAGG 59.109 50.000 0.00 0.00 0.00 3.11
15 16 2.890945 CCTGGTACACAAAAGGGGAAAG 59.109 50.000 0.00 0.00 0.00 2.62
16 17 2.425102 CCCTGGTACACAAAAGGGGAAA 60.425 50.000 0.00 0.00 44.94 3.13
17 18 1.146152 CCCTGGTACACAAAAGGGGAA 59.854 52.381 0.00 0.00 44.94 3.97
18 19 0.774908 CCCTGGTACACAAAAGGGGA 59.225 55.000 0.00 0.00 44.94 4.81
19 20 3.356814 CCCTGGTACACAAAAGGGG 57.643 57.895 0.00 0.00 44.94 4.79
21 22 2.290323 CCTCTCCCTGGTACACAAAAGG 60.290 54.545 0.00 0.00 0.00 3.11
22 23 2.290323 CCCTCTCCCTGGTACACAAAAG 60.290 54.545 0.00 0.00 0.00 2.27
23 24 1.702957 CCCTCTCCCTGGTACACAAAA 59.297 52.381 0.00 0.00 0.00 2.44
24 25 1.132657 TCCCTCTCCCTGGTACACAAA 60.133 52.381 0.00 0.00 0.00 2.83
25 26 0.490017 TCCCTCTCCCTGGTACACAA 59.510 55.000 0.00 0.00 0.00 3.33
26 27 0.716591 ATCCCTCTCCCTGGTACACA 59.283 55.000 0.00 0.00 0.00 3.72
27 28 1.486726 CAATCCCTCTCCCTGGTACAC 59.513 57.143 0.00 0.00 0.00 2.90
28 29 1.364678 TCAATCCCTCTCCCTGGTACA 59.635 52.381 0.00 0.00 0.00 2.90
29 30 2.043227 CTCAATCCCTCTCCCTGGTAC 58.957 57.143 0.00 0.00 0.00 3.34
30 31 1.062121 CCTCAATCCCTCTCCCTGGTA 60.062 57.143 0.00 0.00 0.00 3.25
31 32 0.327000 CCTCAATCCCTCTCCCTGGT 60.327 60.000 0.00 0.00 0.00 4.00
32 33 0.327000 ACCTCAATCCCTCTCCCTGG 60.327 60.000 0.00 0.00 0.00 4.45
33 34 0.835941 CACCTCAATCCCTCTCCCTG 59.164 60.000 0.00 0.00 0.00 4.45
34 35 0.419459 ACACCTCAATCCCTCTCCCT 59.581 55.000 0.00 0.00 0.00 4.20
35 36 1.065126 CAACACCTCAATCCCTCTCCC 60.065 57.143 0.00 0.00 0.00 4.30
36 37 1.630878 ACAACACCTCAATCCCTCTCC 59.369 52.381 0.00 0.00 0.00 3.71
37 38 3.425162 AACAACACCTCAATCCCTCTC 57.575 47.619 0.00 0.00 0.00 3.20
38 39 4.168101 TCTAACAACACCTCAATCCCTCT 58.832 43.478 0.00 0.00 0.00 3.69
39 40 4.553330 TCTAACAACACCTCAATCCCTC 57.447 45.455 0.00 0.00 0.00 4.30
40 41 4.993705 TTCTAACAACACCTCAATCCCT 57.006 40.909 0.00 0.00 0.00 4.20
41 42 6.590234 AAATTCTAACAACACCTCAATCCC 57.410 37.500 0.00 0.00 0.00 3.85
42 43 9.788960 GATAAAATTCTAACAACACCTCAATCC 57.211 33.333 0.00 0.00 0.00 3.01
47 48 9.626045 CCAAAGATAAAATTCTAACAACACCTC 57.374 33.333 0.00 0.00 0.00 3.85
48 49 9.143155 ACCAAAGATAAAATTCTAACAACACCT 57.857 29.630 0.00 0.00 0.00 4.00
49 50 9.758651 AACCAAAGATAAAATTCTAACAACACC 57.241 29.630 0.00 0.00 0.00 4.16
51 52 9.255304 GCAACCAAAGATAAAATTCTAACAACA 57.745 29.630 0.00 0.00 0.00 3.33
52 53 9.255304 TGCAACCAAAGATAAAATTCTAACAAC 57.745 29.630 0.00 0.00 0.00 3.32
53 54 9.823647 TTGCAACCAAAGATAAAATTCTAACAA 57.176 25.926 0.00 0.00 0.00 2.83
54 55 9.823647 TTTGCAACCAAAGATAAAATTCTAACA 57.176 25.926 0.00 0.00 36.09 2.41
57 58 9.474920 CAGTTTGCAACCAAAGATAAAATTCTA 57.525 29.630 0.00 0.00 41.32 2.10
58 59 8.203485 TCAGTTTGCAACCAAAGATAAAATTCT 58.797 29.630 0.00 0.00 41.32 2.40
59 60 8.364129 TCAGTTTGCAACCAAAGATAAAATTC 57.636 30.769 0.00 0.00 41.32 2.17
60 61 8.907222 ATCAGTTTGCAACCAAAGATAAAATT 57.093 26.923 0.00 0.00 41.32 1.82
61 62 8.907222 AATCAGTTTGCAACCAAAGATAAAAT 57.093 26.923 0.00 0.00 41.32 1.82
62 63 9.255304 GTAATCAGTTTGCAACCAAAGATAAAA 57.745 29.630 0.00 0.00 41.32 1.52
63 64 7.870445 GGTAATCAGTTTGCAACCAAAGATAAA 59.130 33.333 0.00 0.00 41.32 1.40
64 65 7.014711 TGGTAATCAGTTTGCAACCAAAGATAA 59.985 33.333 0.00 0.00 41.32 1.75
65 66 6.491745 TGGTAATCAGTTTGCAACCAAAGATA 59.508 34.615 0.00 0.00 41.32 1.98
66 67 5.304101 TGGTAATCAGTTTGCAACCAAAGAT 59.696 36.000 0.00 0.00 41.32 2.40
67 68 4.646945 TGGTAATCAGTTTGCAACCAAAGA 59.353 37.500 0.00 0.00 41.32 2.52
68 69 4.942852 TGGTAATCAGTTTGCAACCAAAG 58.057 39.130 0.00 0.00 41.32 2.77
69 70 5.295950 CATGGTAATCAGTTTGCAACCAAA 58.704 37.500 6.71 0.00 40.19 3.28
70 71 4.798924 GCATGGTAATCAGTTTGCAACCAA 60.799 41.667 6.71 0.00 40.19 3.67
71 72 3.305950 GCATGGTAATCAGTTTGCAACCA 60.306 43.478 0.00 0.96 40.99 3.67
72 73 3.056607 AGCATGGTAATCAGTTTGCAACC 60.057 43.478 0.00 0.00 32.82 3.77
73 74 4.178545 AGCATGGTAATCAGTTTGCAAC 57.821 40.909 0.00 0.00 32.82 4.17
74 75 4.870123 AAGCATGGTAATCAGTTTGCAA 57.130 36.364 0.00 0.00 32.82 4.08
75 76 4.558178 CAAAGCATGGTAATCAGTTTGCA 58.442 39.130 0.00 0.00 32.82 4.08
76 77 3.368843 GCAAAGCATGGTAATCAGTTTGC 59.631 43.478 11.19 11.19 40.25 3.68
77 78 4.624024 CAGCAAAGCATGGTAATCAGTTTG 59.376 41.667 0.00 0.00 37.77 2.93
78 79 4.281688 ACAGCAAAGCATGGTAATCAGTTT 59.718 37.500 0.00 0.00 37.77 2.66
79 80 3.828451 ACAGCAAAGCATGGTAATCAGTT 59.172 39.130 0.00 0.00 37.77 3.16
80 81 3.424703 ACAGCAAAGCATGGTAATCAGT 58.575 40.909 0.00 0.00 37.77 3.41
81 82 4.497006 GCTACAGCAAAGCATGGTAATCAG 60.497 45.833 0.00 0.00 37.77 2.90
82 83 3.378112 GCTACAGCAAAGCATGGTAATCA 59.622 43.478 0.00 0.00 37.77 2.57
83 84 3.957468 GCTACAGCAAAGCATGGTAATC 58.043 45.455 0.00 0.00 37.77 1.75
99 100 8.154856 AGTATTAAAAGGAAGAACTGTGCTACA 58.845 33.333 0.00 0.00 0.00 2.74
100 101 8.549338 AGTATTAAAAGGAAGAACTGTGCTAC 57.451 34.615 0.00 0.00 0.00 3.58
101 102 8.372459 TGAGTATTAAAAGGAAGAACTGTGCTA 58.628 33.333 0.00 0.00 0.00 3.49
102 103 7.224297 TGAGTATTAAAAGGAAGAACTGTGCT 58.776 34.615 0.00 0.00 0.00 4.40
103 104 7.435068 TGAGTATTAAAAGGAAGAACTGTGC 57.565 36.000 0.00 0.00 0.00 4.57
104 105 9.219603 TGATGAGTATTAAAAGGAAGAACTGTG 57.780 33.333 0.00 0.00 0.00 3.66
105 106 9.793259 TTGATGAGTATTAAAAGGAAGAACTGT 57.207 29.630 0.00 0.00 0.00 3.55
111 112 9.727627 GCATCTTTGATGAGTATTAAAAGGAAG 57.272 33.333 11.25 0.00 0.00 3.46
112 113 8.686334 GGCATCTTTGATGAGTATTAAAAGGAA 58.314 33.333 11.25 0.00 0.00 3.36
113 114 7.285401 GGGCATCTTTGATGAGTATTAAAAGGA 59.715 37.037 11.25 0.00 0.00 3.36
114 115 7.428826 GGGCATCTTTGATGAGTATTAAAAGG 58.571 38.462 11.25 0.00 0.00 3.11
115 116 7.286316 AGGGGCATCTTTGATGAGTATTAAAAG 59.714 37.037 11.25 0.00 0.00 2.27
116 117 7.125391 AGGGGCATCTTTGATGAGTATTAAAA 58.875 34.615 11.25 0.00 0.00 1.52
117 118 6.672593 AGGGGCATCTTTGATGAGTATTAAA 58.327 36.000 11.25 0.00 0.00 1.52
118 119 6.126507 TGAGGGGCATCTTTGATGAGTATTAA 60.127 38.462 11.25 0.00 0.00 1.40
119 120 5.369404 TGAGGGGCATCTTTGATGAGTATTA 59.631 40.000 11.25 0.00 0.00 0.98
120 121 4.166725 TGAGGGGCATCTTTGATGAGTATT 59.833 41.667 11.25 0.00 0.00 1.89
121 122 3.718434 TGAGGGGCATCTTTGATGAGTAT 59.282 43.478 11.25 0.00 0.00 2.12
122 123 3.114606 TGAGGGGCATCTTTGATGAGTA 58.885 45.455 11.25 0.00 0.00 2.59
123 124 1.918262 TGAGGGGCATCTTTGATGAGT 59.082 47.619 11.25 0.00 0.00 3.41
124 125 2.723322 TGAGGGGCATCTTTGATGAG 57.277 50.000 11.25 0.00 0.00 2.90
125 126 3.454719 TTTGAGGGGCATCTTTGATGA 57.545 42.857 11.25 0.00 0.00 2.92
126 127 4.540359 TTTTTGAGGGGCATCTTTGATG 57.460 40.909 3.42 3.42 0.00 3.07
149 150 7.472334 AGTGGCATCTTTGATGAGTATTTTT 57.528 32.000 11.25 0.00 0.00 1.94
150 151 7.395489 AGAAGTGGCATCTTTGATGAGTATTTT 59.605 33.333 11.25 0.00 0.00 1.82
151 152 6.888632 AGAAGTGGCATCTTTGATGAGTATTT 59.111 34.615 11.25 0.84 0.00 1.40
271 272 4.062293 CCGAGTGTGATGAAAACAGGTTA 58.938 43.478 0.00 0.00 0.00 2.85
520 556 0.744281 ACTGGGCCAGTTTTGTTTCG 59.256 50.000 33.18 6.97 42.59 3.46
541 577 2.798976 TGTAAAAGCTCACCGTACGT 57.201 45.000 15.21 0.00 0.00 3.57
542 578 2.410730 CCTTGTAAAAGCTCACCGTACG 59.589 50.000 8.69 8.69 0.00 3.67
543 579 3.396560 ACCTTGTAAAAGCTCACCGTAC 58.603 45.455 0.00 0.00 0.00 3.67
544 580 3.322828 AGACCTTGTAAAAGCTCACCGTA 59.677 43.478 0.00 0.00 0.00 4.02
670 728 1.871039 GAAAGCGTACTGACCTGCAAA 59.129 47.619 0.00 0.00 0.00 3.68
687 745 7.445402 CCATGACTGAGAAGAAACTAAAGGAAA 59.555 37.037 0.00 0.00 0.00 3.13
712 773 5.077564 GTTTATCCTCCCATTCCCATTACC 58.922 45.833 0.00 0.00 0.00 2.85
724 785 2.568062 GCTAGCTAGGGTTTATCCTCCC 59.432 54.545 22.10 0.00 43.71 4.30
772 962 6.255887 CCGATGGAATCAGTTAGTTGTTAGTC 59.744 42.308 0.00 0.00 45.97 2.59
904 1111 5.304357 TCTCATACCAATCGAGCCATTTCTA 59.696 40.000 0.00 0.00 0.00 2.10
920 1127 8.789825 AGATATCAATGCAGAAATCTCATACC 57.210 34.615 5.32 0.00 0.00 2.73
989 1528 0.784250 CGCCGACATTTCGTCAAACG 60.784 55.000 0.00 0.00 45.70 3.60
1176 1715 0.031585 TGCGGATGTATGGCGTAGAC 59.968 55.000 0.00 0.00 0.00 2.59
1203 1742 3.325870 GTTGTCATCCATGAAGTCGTGA 58.674 45.455 1.97 0.00 38.75 4.35
1574 2135 7.605309 TGATAAGGCAGTTAATGATATGCAGAG 59.395 37.037 0.00 0.00 40.46 3.35
1609 2170 4.789807 AGATTGCTAGCACAAATCAGGAT 58.210 39.130 23.37 10.67 32.27 3.24
2149 2768 3.267860 CGAGCGCTGGAGAATGCC 61.268 66.667 18.48 0.00 0.00 4.40
2313 2962 4.337555 GCAAAGTAGATCCAGAATGCATGT 59.662 41.667 0.00 0.00 33.00 3.21
2325 2974 3.118261 TCCTGATGGTGGCAAAGTAGATC 60.118 47.826 0.00 0.00 34.23 2.75
2531 3205 7.744087 TCTCAACACATTAACTTAGCATTGT 57.256 32.000 0.00 0.00 0.00 2.71
2534 3208 8.565896 TTCATCTCAACACATTAACTTAGCAT 57.434 30.769 0.00 0.00 0.00 3.79
2620 3294 1.920325 CTTGACCCAGCCTCCTCCA 60.920 63.158 0.00 0.00 0.00 3.86
2659 3333 7.361438 ACAGATTAATTACCCAATCCATTCCA 58.639 34.615 0.00 0.00 32.61 3.53
2716 4157 3.572255 TGAATTTAGGCCCAGTTCAACAC 59.428 43.478 0.00 0.00 0.00 3.32
2730 4173 7.772332 AGAGGTAAACTACGCATGAATTTAG 57.228 36.000 0.00 0.00 0.00 1.85
2768 4211 7.108841 TGTAACTATTTCAGGCGTAAGAGAT 57.891 36.000 0.00 0.00 43.02 2.75
2769 4212 6.519679 TGTAACTATTTCAGGCGTAAGAGA 57.480 37.500 0.00 0.00 43.02 3.10
2770 4213 6.757010 ACATGTAACTATTTCAGGCGTAAGAG 59.243 38.462 0.00 0.00 43.02 2.85
2771 4214 6.636705 ACATGTAACTATTTCAGGCGTAAGA 58.363 36.000 0.00 0.00 43.02 2.10
2776 4219 5.123186 TGGAAACATGTAACTATTTCAGGCG 59.877 40.000 0.00 0.00 33.58 5.52
2803 4888 3.370840 TCATGGCTAGACTTGGCAAAT 57.629 42.857 16.41 0.00 43.05 2.32
2804 4889 2.877097 TCATGGCTAGACTTGGCAAA 57.123 45.000 16.41 6.11 43.05 3.68
2805 4890 3.018856 CAATCATGGCTAGACTTGGCAA 58.981 45.455 16.41 0.00 43.05 4.52
2818 4903 2.953284 ATCTCTGAGGGCAATCATGG 57.047 50.000 4.59 0.00 0.00 3.66
2918 5013 4.307443 TGTCCTCTATTACACGCATGAG 57.693 45.455 0.00 0.00 0.00 2.90
3080 5180 0.471211 TTAGGATAGTGAGGCCCGGG 60.471 60.000 19.09 19.09 0.00 5.73
3081 5181 0.680061 GTTAGGATAGTGAGGCCCGG 59.320 60.000 0.00 0.00 0.00 5.73
3082 5182 0.314302 CGTTAGGATAGTGAGGCCCG 59.686 60.000 0.00 0.00 0.00 6.13
3083 5183 0.033642 GCGTTAGGATAGTGAGGCCC 59.966 60.000 0.00 0.00 0.00 5.80
3084 5184 1.000052 GAGCGTTAGGATAGTGAGGCC 60.000 57.143 0.00 0.00 0.00 5.19
3085 5185 1.000052 GGAGCGTTAGGATAGTGAGGC 60.000 57.143 0.00 0.00 0.00 4.70
3086 5186 2.307768 TGGAGCGTTAGGATAGTGAGG 58.692 52.381 0.00 0.00 0.00 3.86
3087 5187 4.202161 ACAATGGAGCGTTAGGATAGTGAG 60.202 45.833 0.00 0.00 0.00 3.51
3088 5188 3.704566 ACAATGGAGCGTTAGGATAGTGA 59.295 43.478 0.00 0.00 0.00 3.41
3089 5189 4.060038 ACAATGGAGCGTTAGGATAGTG 57.940 45.455 0.00 0.00 0.00 2.74
3090 5190 4.442706 CAACAATGGAGCGTTAGGATAGT 58.557 43.478 0.00 0.00 0.00 2.12
3091 5191 3.248602 GCAACAATGGAGCGTTAGGATAG 59.751 47.826 0.00 0.00 0.00 2.08
3092 5192 3.118408 AGCAACAATGGAGCGTTAGGATA 60.118 43.478 0.00 0.00 0.00 2.59
3093 5193 2.017049 GCAACAATGGAGCGTTAGGAT 58.983 47.619 0.00 0.00 0.00 3.24
3094 5194 1.003118 AGCAACAATGGAGCGTTAGGA 59.997 47.619 0.00 0.00 0.00 2.94
3095 5195 1.453155 AGCAACAATGGAGCGTTAGG 58.547 50.000 0.00 0.00 0.00 2.69
3096 5196 3.058293 TCAAAGCAACAATGGAGCGTTAG 60.058 43.478 1.08 0.00 0.00 2.34
3097 5197 2.881513 TCAAAGCAACAATGGAGCGTTA 59.118 40.909 1.08 0.00 0.00 3.18
3098 5198 1.680735 TCAAAGCAACAATGGAGCGTT 59.319 42.857 0.00 0.00 0.00 4.84
3099 5199 1.267806 CTCAAAGCAACAATGGAGCGT 59.732 47.619 0.00 0.00 0.00 5.07
3100 5200 1.536766 TCTCAAAGCAACAATGGAGCG 59.463 47.619 0.00 0.00 0.00 5.03
3101 5201 3.442977 AGATCTCAAAGCAACAATGGAGC 59.557 43.478 0.00 0.00 0.00 4.70
3102 5202 4.458295 ACAGATCTCAAAGCAACAATGGAG 59.542 41.667 0.00 0.00 0.00 3.86
3103 5203 4.216902 CACAGATCTCAAAGCAACAATGGA 59.783 41.667 0.00 0.00 0.00 3.41
3104 5204 4.482386 CACAGATCTCAAAGCAACAATGG 58.518 43.478 0.00 0.00 0.00 3.16
3105 5205 3.918591 GCACAGATCTCAAAGCAACAATG 59.081 43.478 0.00 0.00 0.00 2.82
3106 5206 3.825014 AGCACAGATCTCAAAGCAACAAT 59.175 39.130 0.00 0.00 0.00 2.71
3107 5207 3.216800 AGCACAGATCTCAAAGCAACAA 58.783 40.909 0.00 0.00 0.00 2.83
3108 5208 2.854963 AGCACAGATCTCAAAGCAACA 58.145 42.857 0.00 0.00 0.00 3.33
3109 5209 3.748048 TGTAGCACAGATCTCAAAGCAAC 59.252 43.478 0.00 0.00 0.00 4.17
3110 5210 3.748048 GTGTAGCACAGATCTCAAAGCAA 59.252 43.478 0.00 0.00 34.08 3.91
3111 5211 3.244181 TGTGTAGCACAGATCTCAAAGCA 60.244 43.478 0.00 0.00 39.62 3.91
3112 5212 3.329386 TGTGTAGCACAGATCTCAAAGC 58.671 45.455 0.00 0.00 39.62 3.51
3113 5213 4.993584 AGTTGTGTAGCACAGATCTCAAAG 59.006 41.667 0.00 0.00 45.39 2.77
3114 5214 4.960938 AGTTGTGTAGCACAGATCTCAAA 58.039 39.130 0.00 0.00 45.39 2.69
3115 5215 4.607293 AGTTGTGTAGCACAGATCTCAA 57.393 40.909 0.00 0.00 45.39 3.02
3116 5216 4.082190 GGTAGTTGTGTAGCACAGATCTCA 60.082 45.833 0.00 0.00 45.39 3.27
3117 5217 4.158764 AGGTAGTTGTGTAGCACAGATCTC 59.841 45.833 0.00 0.00 45.39 2.75
3118 5218 4.090090 AGGTAGTTGTGTAGCACAGATCT 58.910 43.478 2.17 0.00 45.39 2.75
3119 5219 4.457834 AGGTAGTTGTGTAGCACAGATC 57.542 45.455 2.17 0.00 45.39 2.75
3120 5220 4.891992 AAGGTAGTTGTGTAGCACAGAT 57.108 40.909 2.17 0.00 45.39 2.90
3121 5221 5.995565 ATAAGGTAGTTGTGTAGCACAGA 57.004 39.130 2.17 0.00 45.39 3.41
3122 5222 7.094631 TGTAATAAGGTAGTTGTGTAGCACAG 58.905 38.462 2.17 0.00 45.39 3.66
3123 5223 6.995364 TGTAATAAGGTAGTTGTGTAGCACA 58.005 36.000 0.00 0.00 43.02 4.57
3124 5224 7.011109 CCATGTAATAAGGTAGTTGTGTAGCAC 59.989 40.741 0.00 0.00 34.56 4.40
3125 5225 7.045416 CCATGTAATAAGGTAGTTGTGTAGCA 58.955 38.462 0.00 0.00 0.00 3.49
3126 5226 7.270047 TCCATGTAATAAGGTAGTTGTGTAGC 58.730 38.462 0.00 0.00 0.00 3.58
3127 5227 9.832445 ATTCCATGTAATAAGGTAGTTGTGTAG 57.168 33.333 0.00 0.00 0.00 2.74
3129 5229 9.528489 AAATTCCATGTAATAAGGTAGTTGTGT 57.472 29.630 0.00 0.00 0.00 3.72
3163 5263 9.739276 AGACATGTTTTATATGAGAGGAACAAA 57.261 29.630 0.00 0.00 31.69 2.83
3164 5264 9.739276 AAGACATGTTTTATATGAGAGGAACAA 57.261 29.630 0.00 0.00 31.69 2.83
3165 5265 9.166173 CAAGACATGTTTTATATGAGAGGAACA 57.834 33.333 0.00 0.00 0.00 3.18
3166 5266 9.383519 TCAAGACATGTTTTATATGAGAGGAAC 57.616 33.333 0.00 0.00 0.00 3.62
3167 5267 9.958180 TTCAAGACATGTTTTATATGAGAGGAA 57.042 29.630 0.00 0.00 0.00 3.36
3168 5268 9.383519 GTTCAAGACATGTTTTATATGAGAGGA 57.616 33.333 0.00 0.00 0.00 3.71
3169 5269 9.388506 AGTTCAAGACATGTTTTATATGAGAGG 57.611 33.333 0.00 0.00 0.00 3.69
3178 5278 9.921637 AAAGTTTGAAGTTCAAGACATGTTTTA 57.078 25.926 17.36 0.00 37.70 1.52
3179 5279 8.711457 CAAAGTTTGAAGTTCAAGACATGTTTT 58.289 29.630 17.36 11.69 37.70 2.43
3180 5280 7.148590 GCAAAGTTTGAAGTTCAAGACATGTTT 60.149 33.333 19.82 11.95 37.70 2.83
3181 5281 6.311200 GCAAAGTTTGAAGTTCAAGACATGTT 59.689 34.615 19.82 11.21 37.70 2.71
3182 5282 5.807011 GCAAAGTTTGAAGTTCAAGACATGT 59.193 36.000 19.82 0.00 37.70 3.21
3183 5283 5.806502 TGCAAAGTTTGAAGTTCAAGACATG 59.193 36.000 19.82 18.31 37.70 3.21
3184 5284 5.964758 TGCAAAGTTTGAAGTTCAAGACAT 58.035 33.333 19.82 9.69 37.70 3.06
3185 5285 5.384063 TGCAAAGTTTGAAGTTCAAGACA 57.616 34.783 19.82 8.69 37.70 3.41
3186 5286 5.938883 CTGCAAAGTTTGAAGTTCAAGAC 57.061 39.130 19.82 16.90 37.70 3.01
3194 5294 7.915397 AGTTATGTTGTACTGCAAAGTTTGAAG 59.085 33.333 20.32 20.32 42.36 3.02
3195 5295 7.767261 AGTTATGTTGTACTGCAAAGTTTGAA 58.233 30.769 19.82 8.06 39.03 2.69
3196 5296 7.328277 AGTTATGTTGTACTGCAAAGTTTGA 57.672 32.000 19.82 3.95 39.03 2.69
3197 5297 7.985634 AAGTTATGTTGTACTGCAAAGTTTG 57.014 32.000 11.41 11.41 39.03 2.93
3198 5298 8.032451 ACAAAGTTATGTTGTACTGCAAAGTTT 58.968 29.630 0.00 4.19 37.44 2.66
3199 5299 7.543756 ACAAAGTTATGTTGTACTGCAAAGTT 58.456 30.769 0.00 0.00 37.44 2.66
3200 5300 7.095695 ACAAAGTTATGTTGTACTGCAAAGT 57.904 32.000 0.00 0.00 37.44 2.66
3201 5301 8.953990 GTTACAAAGTTATGTTGTACTGCAAAG 58.046 33.333 0.00 0.00 40.30 2.77
3202 5302 8.679100 AGTTACAAAGTTATGTTGTACTGCAAA 58.321 29.630 0.00 0.00 40.30 3.68
3203 5303 8.215926 AGTTACAAAGTTATGTTGTACTGCAA 57.784 30.769 0.00 0.00 40.30 4.08
3204 5304 7.795482 AGTTACAAAGTTATGTTGTACTGCA 57.205 32.000 0.00 0.00 40.30 4.41
3205 5305 9.199982 TCTAGTTACAAAGTTATGTTGTACTGC 57.800 33.333 0.00 0.00 40.30 4.40
3334 5434 9.533831 AGAATGTGGGATAAAACTTACAGATTT 57.466 29.630 0.00 0.00 0.00 2.17
3336 5436 9.614792 GTAGAATGTGGGATAAAACTTACAGAT 57.385 33.333 0.00 0.00 0.00 2.90
3337 5437 8.598916 TGTAGAATGTGGGATAAAACTTACAGA 58.401 33.333 0.00 0.00 0.00 3.41
3338 5438 8.786826 TGTAGAATGTGGGATAAAACTTACAG 57.213 34.615 0.00 0.00 0.00 2.74
3345 5445 9.120538 GCTTTCTATGTAGAATGTGGGATAAAA 57.879 33.333 13.77 0.00 41.52 1.52
3346 5446 8.494433 AGCTTTCTATGTAGAATGTGGGATAAA 58.506 33.333 13.77 0.00 41.52 1.40
3347 5447 8.034313 AGCTTTCTATGTAGAATGTGGGATAA 57.966 34.615 13.77 0.00 41.52 1.75
3348 5448 7.618019 AGCTTTCTATGTAGAATGTGGGATA 57.382 36.000 13.77 0.00 41.52 2.59
3349 5449 6.506538 AGCTTTCTATGTAGAATGTGGGAT 57.493 37.500 13.77 0.00 41.52 3.85
3350 5450 5.957771 AGCTTTCTATGTAGAATGTGGGA 57.042 39.130 13.77 0.00 41.52 4.37
3351 5451 6.375455 ACAAAGCTTTCTATGTAGAATGTGGG 59.625 38.462 9.23 0.00 41.52 4.61
3352 5452 7.383102 ACAAAGCTTTCTATGTAGAATGTGG 57.617 36.000 9.23 0.00 41.52 4.17
3353 5453 8.292448 ACAACAAAGCTTTCTATGTAGAATGTG 58.708 33.333 9.23 2.02 41.52 3.21
3354 5454 8.292448 CACAACAAAGCTTTCTATGTAGAATGT 58.708 33.333 9.23 3.70 41.52 2.71
3355 5455 7.272084 GCACAACAAAGCTTTCTATGTAGAATG 59.728 37.037 9.23 3.07 41.52 2.67
3356 5456 7.175641 AGCACAACAAAGCTTTCTATGTAGAAT 59.824 33.333 9.23 0.00 41.52 2.40
3357 5457 6.486657 AGCACAACAAAGCTTTCTATGTAGAA 59.513 34.615 9.23 0.00 38.01 2.10
3358 5458 5.997746 AGCACAACAAAGCTTTCTATGTAGA 59.002 36.000 9.23 0.00 38.01 2.59
3359 5459 6.082338 CAGCACAACAAAGCTTTCTATGTAG 58.918 40.000 9.23 10.01 39.50 2.74
3360 5460 5.562696 GCAGCACAACAAAGCTTTCTATGTA 60.563 40.000 9.23 0.00 39.50 2.29
3361 5461 4.794003 GCAGCACAACAAAGCTTTCTATGT 60.794 41.667 9.23 11.49 39.50 2.29
3362 5462 3.671928 GCAGCACAACAAAGCTTTCTATG 59.328 43.478 9.23 10.85 39.50 2.23
3363 5463 3.318839 TGCAGCACAACAAAGCTTTCTAT 59.681 39.130 9.23 0.00 39.50 1.98
3364 5464 2.687425 TGCAGCACAACAAAGCTTTCTA 59.313 40.909 9.23 0.00 39.50 2.10
3365 5465 1.477700 TGCAGCACAACAAAGCTTTCT 59.522 42.857 9.23 0.00 39.50 2.52
3366 5466 1.925229 TGCAGCACAACAAAGCTTTC 58.075 45.000 9.23 0.00 39.50 2.62
3367 5467 2.383368 TTGCAGCACAACAAAGCTTT 57.617 40.000 5.69 5.69 39.50 3.51
3368 5468 2.273557 CTTTGCAGCACAACAAAGCTT 58.726 42.857 0.00 0.00 44.32 3.74
3369 5469 1.930567 CTTTGCAGCACAACAAAGCT 58.069 45.000 0.00 0.00 44.32 3.74
3372 5472 3.309961 TCAACTTTGCAGCACAACAAA 57.690 38.095 0.00 0.00 38.23 2.83
3373 5473 3.309961 TTCAACTTTGCAGCACAACAA 57.690 38.095 0.00 0.00 38.23 2.83
3374 5474 3.252400 CTTTCAACTTTGCAGCACAACA 58.748 40.909 0.00 0.00 38.23 3.33
3375 5475 3.253230 ACTTTCAACTTTGCAGCACAAC 58.747 40.909 0.00 0.00 38.23 3.32
3376 5476 3.591196 ACTTTCAACTTTGCAGCACAA 57.409 38.095 0.00 0.00 36.13 3.33
3377 5477 3.441922 TGTACTTTCAACTTTGCAGCACA 59.558 39.130 0.00 0.00 0.00 4.57
3378 5478 4.027572 TGTACTTTCAACTTTGCAGCAC 57.972 40.909 0.00 0.00 0.00 4.40
3379 5479 4.710423 TTGTACTTTCAACTTTGCAGCA 57.290 36.364 0.00 0.00 0.00 4.41
3380 5480 6.128688 TGTTTTTGTACTTTCAACTTTGCAGC 60.129 34.615 0.00 0.00 0.00 5.25
3381 5481 7.344910 TGTTTTTGTACTTTCAACTTTGCAG 57.655 32.000 0.00 0.00 0.00 4.41
3382 5482 7.386299 ACATGTTTTTGTACTTTCAACTTTGCA 59.614 29.630 0.00 0.00 0.00 4.08
3383 5483 7.738345 ACATGTTTTTGTACTTTCAACTTTGC 58.262 30.769 0.00 0.00 0.00 3.68
3384 5484 9.739786 GAACATGTTTTTGTACTTTCAACTTTG 57.260 29.630 13.36 0.00 0.00 2.77
3385 5485 9.705290 AGAACATGTTTTTGTACTTTCAACTTT 57.295 25.926 13.36 0.00 0.00 2.66
3429 5529 9.846248 CAGGATTCGTGAAAATAATTTTCTCTT 57.154 29.630 0.00 0.00 47.00 2.85
3430 5530 9.231297 TCAGGATTCGTGAAAATAATTTTCTCT 57.769 29.630 6.59 0.00 47.00 3.10
3432 5532 9.793252 CATCAGGATTCGTGAAAATAATTTTCT 57.207 29.630 12.62 0.00 47.00 2.52
3436 5536 9.613428 TCTACATCAGGATTCGTGAAAATAATT 57.387 29.630 12.62 0.00 32.06 1.40
3437 5537 9.613428 TTCTACATCAGGATTCGTGAAAATAAT 57.387 29.630 12.62 0.00 32.06 1.28
3438 5538 9.443323 TTTCTACATCAGGATTCGTGAAAATAA 57.557 29.630 12.62 2.85 32.06 1.40
3439 5539 9.613428 ATTTCTACATCAGGATTCGTGAAAATA 57.387 29.630 12.62 5.60 32.06 1.40
3440 5540 7.921786 TTTCTACATCAGGATTCGTGAAAAT 57.078 32.000 12.62 4.82 32.06 1.82
3441 5541 7.606073 TCATTTCTACATCAGGATTCGTGAAAA 59.394 33.333 12.62 8.80 32.06 2.29
3442 5542 7.102993 TCATTTCTACATCAGGATTCGTGAAA 58.897 34.615 12.62 2.90 32.06 2.69
3443 5543 6.639563 TCATTTCTACATCAGGATTCGTGAA 58.360 36.000 12.62 0.00 32.06 3.18
3444 5544 6.127338 ACTCATTTCTACATCAGGATTCGTGA 60.127 38.462 11.16 11.16 32.83 4.35
3445 5545 6.019237 CACTCATTTCTACATCAGGATTCGTG 60.019 42.308 0.00 0.00 0.00 4.35
3446 5546 6.045318 CACTCATTTCTACATCAGGATTCGT 58.955 40.000 0.00 0.00 0.00 3.85
3447 5547 5.464722 CCACTCATTTCTACATCAGGATTCG 59.535 44.000 0.00 0.00 0.00 3.34
3448 5548 6.352516 ACCACTCATTTCTACATCAGGATTC 58.647 40.000 0.00 0.00 0.00 2.52
3449 5549 6.319048 ACCACTCATTTCTACATCAGGATT 57.681 37.500 0.00 0.00 0.00 3.01
3450 5550 5.965033 ACCACTCATTTCTACATCAGGAT 57.035 39.130 0.00 0.00 0.00 3.24
3451 5551 5.491070 CAACCACTCATTTCTACATCAGGA 58.509 41.667 0.00 0.00 0.00 3.86
3452 5552 4.637534 CCAACCACTCATTTCTACATCAGG 59.362 45.833 0.00 0.00 0.00 3.86
3453 5553 5.491070 TCCAACCACTCATTTCTACATCAG 58.509 41.667 0.00 0.00 0.00 2.90
3454 5554 5.497464 TCCAACCACTCATTTCTACATCA 57.503 39.130 0.00 0.00 0.00 3.07
3455 5555 7.227512 CCTTATCCAACCACTCATTTCTACATC 59.772 40.741 0.00 0.00 0.00 3.06
3456 5556 7.056635 CCTTATCCAACCACTCATTTCTACAT 58.943 38.462 0.00 0.00 0.00 2.29
3457 5557 6.214615 TCCTTATCCAACCACTCATTTCTACA 59.785 38.462 0.00 0.00 0.00 2.74
3458 5558 6.650120 TCCTTATCCAACCACTCATTTCTAC 58.350 40.000 0.00 0.00 0.00 2.59
3459 5559 6.443849 ACTCCTTATCCAACCACTCATTTCTA 59.556 38.462 0.00 0.00 0.00 2.10
3460 5560 5.251700 ACTCCTTATCCAACCACTCATTTCT 59.748 40.000 0.00 0.00 0.00 2.52
3461 5561 5.501156 ACTCCTTATCCAACCACTCATTTC 58.499 41.667 0.00 0.00 0.00 2.17
3462 5562 5.520748 ACTCCTTATCCAACCACTCATTT 57.479 39.130 0.00 0.00 0.00 2.32
3463 5563 5.104485 GGTACTCCTTATCCAACCACTCATT 60.104 44.000 0.00 0.00 0.00 2.57
3464 5564 4.409247 GGTACTCCTTATCCAACCACTCAT 59.591 45.833 0.00 0.00 0.00 2.90
3465 5565 3.773119 GGTACTCCTTATCCAACCACTCA 59.227 47.826 0.00 0.00 0.00 3.41
3466 5566 3.134262 GGGTACTCCTTATCCAACCACTC 59.866 52.174 0.00 0.00 29.98 3.51
3467 5567 3.113043 GGGTACTCCTTATCCAACCACT 58.887 50.000 0.00 0.00 29.98 4.00
3468 5568 2.159000 CGGGTACTCCTTATCCAACCAC 60.159 54.545 0.00 0.00 28.52 4.16
3469 5569 2.112998 CGGGTACTCCTTATCCAACCA 58.887 52.381 0.00 0.00 28.52 3.67
3470 5570 1.415289 CCGGGTACTCCTTATCCAACC 59.585 57.143 0.00 0.00 28.52 3.77
3471 5571 1.415289 CCCGGGTACTCCTTATCCAAC 59.585 57.143 14.18 0.00 28.52 3.77
3472 5572 1.797320 CCCGGGTACTCCTTATCCAA 58.203 55.000 14.18 0.00 28.52 3.53
3473 5573 3.545003 CCCGGGTACTCCTTATCCA 57.455 57.895 14.18 0.00 28.52 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.