Multiple sequence alignment - TraesCS4A01G329000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G329000 chr4A 100.000 4355 0 0 1 4355 614248194 614243840 0.000000e+00 8043.0
1 TraesCS4A01G329000 chr4A 78.616 636 114 13 41 659 666050380 666051010 6.780000e-108 401.0
2 TraesCS4A01G329000 chr4A 80.147 272 33 9 2501 2760 614245392 614245130 2.680000e-42 183.0
3 TraesCS4A01G329000 chr4A 80.147 272 33 9 2803 3065 614245694 614245435 2.680000e-42 183.0
4 TraesCS4A01G329000 chr4A 86.567 67 6 3 716 781 84382983 84382919 2.170000e-08 71.3
5 TraesCS4A01G329000 chr5D 92.976 3531 155 25 662 4171 554357566 554361024 0.000000e+00 5060.0
6 TraesCS4A01G329000 chr5D 78.185 628 107 17 41 659 478439140 478438534 1.480000e-99 374.0
7 TraesCS4A01G329000 chr5D 84.091 220 24 2 2501 2709 554359706 554359925 7.390000e-48 202.0
8 TraesCS4A01G329000 chr5B 90.526 3420 216 46 662 4000 696427832 696424440 0.000000e+00 4421.0
9 TraesCS4A01G329000 chr5B 80.292 274 32 5 2501 2760 696425659 696425394 2.070000e-43 187.0
10 TraesCS4A01G329000 chr4D 84.295 624 88 7 39 659 98483012 98483628 6.230000e-168 601.0
11 TraesCS4A01G329000 chr4D 82.000 600 93 6 64 652 337142573 337141978 3.030000e-136 496.0
12 TraesCS4A01G329000 chr7D 79.467 638 106 16 40 659 51678166 51678796 3.110000e-116 429.0
13 TraesCS4A01G329000 chr2B 79.043 606 111 9 39 641 34584992 34585584 6.780000e-108 401.0
14 TraesCS4A01G329000 chr2B 84.507 71 9 2 743 812 596932084 596932153 7.820000e-08 69.4
15 TraesCS4A01G329000 chr2A 78.282 617 115 12 41 641 23625818 23625205 3.180000e-101 379.0
16 TraesCS4A01G329000 chr2A 84.971 173 18 4 4094 4258 372229040 372229212 7.490000e-38 169.0
17 TraesCS4A01G329000 chr3B 80.000 315 39 13 40 352 795849620 795849912 1.230000e-50 211.0
18 TraesCS4A01G329000 chr3B 84.444 90 12 2 696 784 201033890 201033802 2.160000e-13 87.9
19 TraesCS4A01G329000 chr7A 83.556 225 32 3 429 653 54184189 54184408 5.710000e-49 206.0
20 TraesCS4A01G329000 chr6B 83.333 84 10 3 726 807 118889973 118889892 1.680000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G329000 chr4A 614243840 614248194 4354 True 2803 8043 86.764667 1 4355 3 chr4A.!!$R2 4354
1 TraesCS4A01G329000 chr4A 666050380 666051010 630 False 401 401 78.616000 41 659 1 chr4A.!!$F1 618
2 TraesCS4A01G329000 chr5D 554357566 554361024 3458 False 2631 5060 88.533500 662 4171 2 chr5D.!!$F1 3509
3 TraesCS4A01G329000 chr5D 478438534 478439140 606 True 374 374 78.185000 41 659 1 chr5D.!!$R1 618
4 TraesCS4A01G329000 chr5B 696424440 696427832 3392 True 2304 4421 85.409000 662 4000 2 chr5B.!!$R1 3338
5 TraesCS4A01G329000 chr4D 98483012 98483628 616 False 601 601 84.295000 39 659 1 chr4D.!!$F1 620
6 TraesCS4A01G329000 chr4D 337141978 337142573 595 True 496 496 82.000000 64 652 1 chr4D.!!$R1 588
7 TraesCS4A01G329000 chr7D 51678166 51678796 630 False 429 429 79.467000 40 659 1 chr7D.!!$F1 619
8 TraesCS4A01G329000 chr2B 34584992 34585584 592 False 401 401 79.043000 39 641 1 chr2B.!!$F1 602
9 TraesCS4A01G329000 chr2A 23625205 23625818 613 True 379 379 78.282000 41 641 1 chr2A.!!$R1 600

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
433 482 0.473755 TGCTTCATGTGTCTGGGTGT 59.526 50.000 0.00 0.0 0.00 4.16 F
548 597 1.073897 AGGCAGAGTGGGCAGAAAC 59.926 57.895 0.00 0.0 35.46 2.78 F
641 692 1.202758 ACATCTTGTTCTTGTCCGGCA 60.203 47.619 0.00 0.0 0.00 5.69 F
2202 2291 0.820891 AGCAATTCCGCATGGCCTAG 60.821 55.000 3.32 0.0 30.86 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2191 2280 0.687354 AGGGATAACTAGGCCATGCG 59.313 55.000 5.01 0.0 0.00 4.73 R
2196 2285 1.072489 GGAAGCAGGGATAACTAGGCC 59.928 57.143 0.00 0.0 0.00 5.19 R
2508 2603 2.353109 GGAAAGAATTTGCCAGGTCAGC 60.353 50.000 0.00 0.0 40.87 4.26 R
4187 4334 0.324645 GGGCATTCCTCCAACACCAT 60.325 55.000 0.00 0.0 0.00 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 6.892691 GCCTCCTCGAAGTTATTGAATTATG 58.107 40.000 0.00 0.00 0.00 1.90
25 26 6.483640 GCCTCCTCGAAGTTATTGAATTATGT 59.516 38.462 0.00 0.00 0.00 2.29
26 27 7.656137 GCCTCCTCGAAGTTATTGAATTATGTA 59.344 37.037 0.00 0.00 0.00 2.29
27 28 9.542462 CCTCCTCGAAGTTATTGAATTATGTAA 57.458 33.333 0.00 0.00 0.00 2.41
131 147 2.190578 GATCAGTGGGCGAAGGGG 59.809 66.667 0.00 0.00 0.00 4.79
133 149 2.317149 GATCAGTGGGCGAAGGGGAG 62.317 65.000 0.00 0.00 0.00 4.30
141 160 1.545841 GGCGAAGGGGAGAAAAACAT 58.454 50.000 0.00 0.00 0.00 2.71
142 161 1.893137 GGCGAAGGGGAGAAAAACATT 59.107 47.619 0.00 0.00 0.00 2.71
146 165 4.072131 CGAAGGGGAGAAAAACATTGAGA 58.928 43.478 0.00 0.00 0.00 3.27
162 195 4.891627 TTGAGAAAAACTTCGTCATGCA 57.108 36.364 0.00 0.00 0.00 3.96
168 201 6.166279 AGAAAAACTTCGTCATGCAGAGATA 58.834 36.000 0.00 0.00 0.00 1.98
174 207 1.718178 CGTCATGCAGAGATATCACGC 59.282 52.381 5.32 7.61 0.00 5.34
176 209 1.066136 CATGCAGAGATATCACGCGG 58.934 55.000 12.47 0.00 0.00 6.46
235 284 1.452651 CCGCCATTGCTCCATGTCT 60.453 57.895 0.00 0.00 34.43 3.41
249 298 3.426568 GTCTGAGCGGCAACAGCC 61.427 66.667 17.83 7.24 45.19 4.85
310 359 4.536090 ACACAGTTATTCCTCTCCATCCAA 59.464 41.667 0.00 0.00 0.00 3.53
330 379 1.471119 ATTTGCCAGCTGATGAGTGG 58.529 50.000 17.39 0.00 0.00 4.00
353 402 5.677567 GGATCATGGATTTGATGCCTTTTT 58.322 37.500 0.00 0.00 38.20 1.94
357 406 3.246301 TGGATTTGATGCCTTTTTGGGA 58.754 40.909 0.00 0.00 41.57 4.37
408 457 1.373435 CCTTGGCCGTGGTTGTCTA 59.627 57.895 0.00 0.00 0.00 2.59
418 467 3.317449 GGTTGTCTACCCGTTGCTT 57.683 52.632 0.00 0.00 41.43 3.91
433 482 0.473755 TGCTTCATGTGTCTGGGTGT 59.526 50.000 0.00 0.00 0.00 4.16
445 494 2.269241 GGGTGTAGGGCAGAGCAC 59.731 66.667 0.00 0.00 0.00 4.40
454 503 4.416738 GCAGAGCACCCCTCCCAC 62.417 72.222 0.00 0.00 41.74 4.61
531 580 3.184683 GCTCTCGAGGTTGCGCAG 61.185 66.667 11.31 0.00 0.00 5.18
548 597 1.073897 AGGCAGAGTGGGCAGAAAC 59.926 57.895 0.00 0.00 35.46 2.78
550 599 1.239968 GGCAGAGTGGGCAGAAACAG 61.240 60.000 0.00 0.00 0.00 3.16
635 684 4.702131 GCCATAAGGACATCTTGTTCTTGT 59.298 41.667 10.74 2.27 45.34 3.16
641 692 1.202758 ACATCTTGTTCTTGTCCGGCA 60.203 47.619 0.00 0.00 0.00 5.69
652 703 3.494254 TCCGGCACCCACACCTTT 61.494 61.111 0.00 0.00 0.00 3.11
653 704 2.520741 CCGGCACCCACACCTTTT 60.521 61.111 0.00 0.00 0.00 2.27
659 710 2.514803 GCACCCACACCTTTTAGATGT 58.485 47.619 0.00 0.00 0.00 3.06
660 711 2.890945 GCACCCACACCTTTTAGATGTT 59.109 45.455 0.00 0.00 0.00 2.71
683 734 7.040062 TGTTTGTAAGGAAGATTGTATGGTTGG 60.040 37.037 0.00 0.00 0.00 3.77
686 737 4.927267 AGGAAGATTGTATGGTTGGTGA 57.073 40.909 0.00 0.00 0.00 4.02
690 741 5.163519 GGAAGATTGTATGGTTGGTGATTGG 60.164 44.000 0.00 0.00 0.00 3.16
699 750 5.263872 TGGTTGGTGATTGGGTAATACTT 57.736 39.130 0.00 0.00 0.00 2.24
708 759 1.750778 TGGGTAATACTTCGTCCGTCC 59.249 52.381 0.00 0.00 0.00 4.79
709 760 1.750778 GGGTAATACTTCGTCCGTCCA 59.249 52.381 0.00 0.00 0.00 4.02
724 775 2.492001 CGTCCAAAATTACTTGTCGCG 58.508 47.619 0.00 0.00 0.00 5.87
731 782 5.737290 CCAAAATTACTTGTCGCGGAAATAG 59.263 40.000 6.13 0.00 0.00 1.73
741 792 7.709613 ACTTGTCGCGGAAATAGATAAAAGTAT 59.290 33.333 6.13 0.00 0.00 2.12
921 973 1.944709 CGTTCCTTCCTTCGTTGGTTT 59.055 47.619 0.00 0.00 0.00 3.27
1074 1132 2.107141 GCGGCCTATGCGTCTCTT 59.893 61.111 0.00 0.00 38.85 2.85
1433 1503 1.542547 CGAATCCATCCCTAAACCCGG 60.543 57.143 0.00 0.00 0.00 5.73
1441 1511 3.708544 CTAAACCCGGCCCGGTGA 61.709 66.667 22.94 7.20 46.80 4.02
2172 2261 2.351276 GGCACCCTACCACACCTG 59.649 66.667 0.00 0.00 0.00 4.00
2195 2284 2.624364 TGCATTATCAGCAATTCCGCAT 59.376 40.909 0.00 0.00 39.39 4.73
2196 2285 2.984471 GCATTATCAGCAATTCCGCATG 59.016 45.455 0.00 0.00 0.00 4.06
2202 2291 0.820891 AGCAATTCCGCATGGCCTAG 60.821 55.000 3.32 0.00 30.86 3.02
2232 2324 5.078411 TGCTTCCTGACTAATCAAGACTC 57.922 43.478 0.00 0.00 33.30 3.36
2443 2535 3.482472 CGGTATGTTCTGTCGATTTCTCG 59.518 47.826 0.00 0.00 46.41 4.04
2452 2544 3.063485 TGTCGATTTCTCGTGCAATCAA 58.937 40.909 9.81 0.00 45.25 2.57
2475 2567 9.155975 TCAATTTATCACTACTGAAAAGAGAGC 57.844 33.333 0.00 0.00 0.00 4.09
2490 2582 7.761704 TGAAAAGAGAGCTAACTGATGTATGTC 59.238 37.037 0.00 0.00 0.00 3.06
2508 2603 6.761242 TGTATGTCGTCAGAAGGATTTAATGG 59.239 38.462 0.00 0.00 0.00 3.16
2639 2757 6.798427 ACATCTAATCTTCAGCACCTTCTA 57.202 37.500 0.00 0.00 0.00 2.10
2647 2765 8.558973 AATCTTCAGCACCTTCTATATATTGC 57.441 34.615 0.00 0.00 0.00 3.56
2709 2830 7.661536 AGTCTTTAGCACCTTCTGTATATCA 57.338 36.000 0.00 0.00 0.00 2.15
2755 2876 7.187824 ACCCATTATGTATCCTGTGCTATAG 57.812 40.000 0.00 0.00 0.00 1.31
2952 3077 6.347859 ACGTTTCTCTTCAGAACCTTCTAT 57.652 37.500 0.00 0.00 38.44 1.98
2959 3084 8.367660 TCTCTTCAGAACCTTCTATATGTTGT 57.632 34.615 0.00 0.00 35.34 3.32
2965 3090 9.987272 TCAGAACCTTCTATATGTTGTGATATG 57.013 33.333 0.00 0.00 37.36 1.78
3023 3148 5.353938 TCTTTACCACCTTGTATGTATCGC 58.646 41.667 0.00 0.00 0.00 4.58
3133 3260 8.795513 TGGTGCCATCATGTATTTAATCATAAG 58.204 33.333 0.00 0.00 0.00 1.73
3324 3451 0.317479 AGGTGCTAGAAGAACGCGTT 59.683 50.000 26.97 26.97 0.00 4.84
3376 3503 0.667792 AGAGTCGCGAACCAAGCTTC 60.668 55.000 12.06 0.00 0.00 3.86
3405 3532 0.037447 AGAGAGCCAAACCAAGCCTC 59.963 55.000 0.00 0.00 0.00 4.70
3427 3554 9.081997 GCCTCTCTAATGATCTAACATAAATCG 57.918 37.037 0.00 0.00 0.00 3.34
3991 4138 6.208599 GGAATTCACTCAAGATGGGTTTTGTA 59.791 38.462 7.93 0.00 0.00 2.41
4000 4147 3.763897 AGATGGGTTTTGTAGAACATGGC 59.236 43.478 0.00 0.00 0.00 4.40
4002 4149 2.625790 TGGGTTTTGTAGAACATGGCAC 59.374 45.455 0.00 0.00 0.00 5.01
4020 4167 2.863704 GCACATCTTGGTTTGCCTGTTC 60.864 50.000 0.00 0.00 35.27 3.18
4048 4195 4.446385 CAGCATCACAAAATTTGGTCACTG 59.554 41.667 10.71 7.05 34.12 3.66
4070 4217 4.277921 TGAAAATGCCAAAATTGCCTTTCC 59.722 37.500 0.00 0.00 32.67 3.13
4071 4218 3.505480 AATGCCAAAATTGCCTTTCCA 57.495 38.095 0.00 0.00 0.00 3.53
4072 4219 3.724732 ATGCCAAAATTGCCTTTCCAT 57.275 38.095 0.00 0.00 0.00 3.41
4073 4220 3.056588 TGCCAAAATTGCCTTTCCATC 57.943 42.857 0.00 0.00 0.00 3.51
4074 4221 2.290197 TGCCAAAATTGCCTTTCCATCC 60.290 45.455 0.00 0.00 0.00 3.51
4075 4222 2.026915 GCCAAAATTGCCTTTCCATCCT 60.027 45.455 0.00 0.00 0.00 3.24
4076 4223 3.197549 GCCAAAATTGCCTTTCCATCCTA 59.802 43.478 0.00 0.00 0.00 2.94
4077 4224 4.758688 CCAAAATTGCCTTTCCATCCTAC 58.241 43.478 0.00 0.00 0.00 3.18
4078 4225 4.222588 CCAAAATTGCCTTTCCATCCTACA 59.777 41.667 0.00 0.00 0.00 2.74
4079 4226 5.413499 CAAAATTGCCTTTCCATCCTACAG 58.587 41.667 0.00 0.00 0.00 2.74
4080 4227 4.322057 AATTGCCTTTCCATCCTACAGT 57.678 40.909 0.00 0.00 0.00 3.55
4081 4228 3.350219 TTGCCTTTCCATCCTACAGTC 57.650 47.619 0.00 0.00 0.00 3.51
4082 4229 1.207089 TGCCTTTCCATCCTACAGTCG 59.793 52.381 0.00 0.00 0.00 4.18
4083 4230 1.207329 GCCTTTCCATCCTACAGTCGT 59.793 52.381 0.00 0.00 0.00 4.34
4084 4231 2.429610 GCCTTTCCATCCTACAGTCGTA 59.570 50.000 0.00 0.00 0.00 3.43
4085 4232 3.069729 GCCTTTCCATCCTACAGTCGTAT 59.930 47.826 0.00 0.00 0.00 3.06
4113 4260 0.034089 GAGGAGGAAATGGGGTGTGG 60.034 60.000 0.00 0.00 0.00 4.17
4143 4290 6.712095 TCCTAAGGCATAATCATGACATGTTC 59.288 38.462 14.98 11.18 43.34 3.18
4171 4318 4.826733 TGTGATTCTTTGCACTTGGTACAT 59.173 37.500 0.00 0.00 36.05 2.29
4172 4319 5.301551 TGTGATTCTTTGCACTTGGTACATT 59.698 36.000 0.00 0.00 36.05 2.71
4173 4320 6.183360 TGTGATTCTTTGCACTTGGTACATTT 60.183 34.615 0.00 0.00 36.05 2.32
4174 4321 6.144402 GTGATTCTTTGCACTTGGTACATTTG 59.856 38.462 0.00 0.00 39.30 2.32
4175 4322 3.976169 TCTTTGCACTTGGTACATTTGC 58.024 40.909 0.00 0.00 43.96 3.68
4181 4328 6.957920 TGCACTTGGTACATTTGCATATAT 57.042 33.333 6.59 0.00 46.83 0.86
4182 4329 7.345422 TGCACTTGGTACATTTGCATATATT 57.655 32.000 6.59 0.00 46.83 1.28
4183 4330 7.780064 TGCACTTGGTACATTTGCATATATTT 58.220 30.769 6.59 0.00 46.83 1.40
4184 4331 8.907885 TGCACTTGGTACATTTGCATATATTTA 58.092 29.630 6.59 0.00 46.83 1.40
4185 4332 9.912634 GCACTTGGTACATTTGCATATATTTAT 57.087 29.630 0.00 0.00 43.40 1.40
4199 4346 9.241919 TGCATATATTTATTATGGTGTTGGAGG 57.758 33.333 0.00 0.00 0.00 4.30
4200 4347 9.461312 GCATATATTTATTATGGTGTTGGAGGA 57.539 33.333 0.00 0.00 0.00 3.71
4204 4351 6.463995 TTTATTATGGTGTTGGAGGAATGC 57.536 37.500 0.00 0.00 0.00 3.56
4205 4352 2.435372 TATGGTGTTGGAGGAATGCC 57.565 50.000 0.00 0.00 0.00 4.40
4206 4353 0.324645 ATGGTGTTGGAGGAATGCCC 60.325 55.000 0.00 0.00 33.31 5.36
4207 4354 2.046285 GGTGTTGGAGGAATGCCCG 61.046 63.158 0.00 0.00 40.87 6.13
4208 4355 1.002624 GTGTTGGAGGAATGCCCGA 60.003 57.895 0.00 0.00 40.87 5.14
4209 4356 1.026718 GTGTTGGAGGAATGCCCGAG 61.027 60.000 0.00 0.00 40.87 4.63
4210 4357 2.115291 GTTGGAGGAATGCCCGAGC 61.115 63.158 0.00 0.00 40.87 5.03
4219 4366 3.313524 TGCCCGAGCAGAGCTTGA 61.314 61.111 7.80 0.00 46.52 3.02
4220 4367 2.511145 GCCCGAGCAGAGCTTGAG 60.511 66.667 7.80 0.00 42.27 3.02
4221 4368 2.186384 CCCGAGCAGAGCTTGAGG 59.814 66.667 7.80 5.22 42.27 3.86
4222 4369 2.354401 CCCGAGCAGAGCTTGAGGA 61.354 63.158 7.80 0.00 42.27 3.71
4223 4370 1.593787 CCGAGCAGAGCTTGAGGAA 59.406 57.895 7.80 0.00 42.27 3.36
4224 4371 0.739112 CCGAGCAGAGCTTGAGGAAC 60.739 60.000 7.80 0.00 42.27 3.62
4225 4372 0.246086 CGAGCAGAGCTTGAGGAACT 59.754 55.000 0.00 0.00 42.27 3.01
4226 4373 1.724429 GAGCAGAGCTTGAGGAACTG 58.276 55.000 0.00 0.00 37.87 3.16
4227 4374 1.274728 GAGCAGAGCTTGAGGAACTGA 59.725 52.381 0.00 0.00 37.87 3.41
4228 4375 1.696336 AGCAGAGCTTGAGGAACTGAA 59.304 47.619 0.00 0.00 34.00 3.02
4229 4376 1.803555 GCAGAGCTTGAGGAACTGAAC 59.196 52.381 0.00 0.00 41.55 3.18
4230 4377 2.421619 CAGAGCTTGAGGAACTGAACC 58.578 52.381 0.00 0.00 41.55 3.62
4231 4378 2.038295 CAGAGCTTGAGGAACTGAACCT 59.962 50.000 0.00 0.00 41.55 3.50
4232 4379 2.038295 AGAGCTTGAGGAACTGAACCTG 59.962 50.000 0.00 0.00 41.55 4.00
4233 4380 0.877743 GCTTGAGGAACTGAACCTGC 59.122 55.000 0.00 0.00 41.55 4.85
4234 4381 1.544314 GCTTGAGGAACTGAACCTGCT 60.544 52.381 0.00 0.00 41.55 4.24
4235 4382 2.856222 CTTGAGGAACTGAACCTGCTT 58.144 47.619 0.00 0.00 41.55 3.91
4236 4383 2.260844 TGAGGAACTGAACCTGCTTG 57.739 50.000 0.00 0.00 41.55 4.01
4237 4384 0.877743 GAGGAACTGAACCTGCTTGC 59.122 55.000 0.00 0.00 41.55 4.01
4238 4385 0.475906 AGGAACTGAACCTGCTTGCT 59.524 50.000 0.00 0.00 37.18 3.91
4239 4386 1.699634 AGGAACTGAACCTGCTTGCTA 59.300 47.619 0.00 0.00 37.18 3.49
4240 4387 2.079925 GGAACTGAACCTGCTTGCTAG 58.920 52.381 0.00 0.00 0.00 3.42
4241 4388 2.289694 GGAACTGAACCTGCTTGCTAGA 60.290 50.000 0.00 0.00 0.00 2.43
4242 4389 2.758736 ACTGAACCTGCTTGCTAGAG 57.241 50.000 0.00 0.00 0.00 2.43
4243 4390 1.338579 ACTGAACCTGCTTGCTAGAGC 60.339 52.381 0.00 0.00 43.00 4.09
4259 4406 5.763088 GCTAGAGCACTTTTAAACTTGCTT 58.237 37.500 19.08 13.19 45.32 3.91
4260 4407 6.899114 GCTAGAGCACTTTTAAACTTGCTTA 58.101 36.000 19.08 13.48 45.32 3.09
4261 4408 7.530863 GCTAGAGCACTTTTAAACTTGCTTAT 58.469 34.615 19.08 14.60 45.32 1.73
4262 4409 8.023706 GCTAGAGCACTTTTAAACTTGCTTATT 58.976 33.333 19.08 12.59 45.32 1.40
4265 4412 9.067986 AGAGCACTTTTAAACTTGCTTATTACT 57.932 29.630 19.08 11.18 45.32 2.24
4268 4415 9.556030 GCACTTTTAAACTTGCTTATTACTAGG 57.444 33.333 11.39 0.00 32.00 3.02
4308 4455 3.121738 AGGGAACGTTGAGTTTGTAGG 57.878 47.619 5.00 0.00 44.35 3.18
4309 4456 2.436911 AGGGAACGTTGAGTTTGTAGGT 59.563 45.455 5.00 0.00 44.35 3.08
4310 4457 3.118149 AGGGAACGTTGAGTTTGTAGGTT 60.118 43.478 5.00 0.00 44.35 3.50
4311 4458 3.002965 GGGAACGTTGAGTTTGTAGGTTG 59.997 47.826 5.00 0.00 44.35 3.77
4312 4459 3.624410 GGAACGTTGAGTTTGTAGGTTGT 59.376 43.478 5.00 0.00 44.35 3.32
4313 4460 4.260497 GGAACGTTGAGTTTGTAGGTTGTC 60.260 45.833 5.00 0.00 44.35 3.18
4314 4461 3.864243 ACGTTGAGTTTGTAGGTTGTCA 58.136 40.909 0.00 0.00 0.00 3.58
4315 4462 4.255301 ACGTTGAGTTTGTAGGTTGTCAA 58.745 39.130 0.00 0.00 0.00 3.18
4316 4463 4.696402 ACGTTGAGTTTGTAGGTTGTCAAA 59.304 37.500 0.00 0.00 0.00 2.69
4317 4464 5.181622 ACGTTGAGTTTGTAGGTTGTCAAAA 59.818 36.000 0.00 0.00 35.73 2.44
4318 4465 6.127842 ACGTTGAGTTTGTAGGTTGTCAAAAT 60.128 34.615 0.00 0.00 35.73 1.82
4319 4466 7.066043 ACGTTGAGTTTGTAGGTTGTCAAAATA 59.934 33.333 0.00 0.00 35.73 1.40
4320 4467 8.073768 CGTTGAGTTTGTAGGTTGTCAAAATAT 58.926 33.333 0.00 0.00 35.73 1.28
4321 4468 9.744468 GTTGAGTTTGTAGGTTGTCAAAATATT 57.256 29.630 0.00 0.00 35.73 1.28
4323 4470 9.743057 TGAGTTTGTAGGTTGTCAAAATATTTG 57.257 29.630 0.39 0.00 35.73 2.32
4324 4471 9.744468 GAGTTTGTAGGTTGTCAAAATATTTGT 57.256 29.630 0.39 0.00 35.73 2.83
4329 4476 9.344772 TGTAGGTTGTCAAAATATTTGTACTGT 57.655 29.630 0.39 0.00 0.00 3.55
4346 4493 9.667107 TTTGTACTGTATTAGATTCTTCCAAGG 57.333 33.333 0.00 0.00 0.00 3.61
4347 4494 7.792032 TGTACTGTATTAGATTCTTCCAAGGG 58.208 38.462 0.00 0.00 0.00 3.95
4348 4495 6.893020 ACTGTATTAGATTCTTCCAAGGGT 57.107 37.500 0.00 0.00 0.00 4.34
4349 4496 7.272144 ACTGTATTAGATTCTTCCAAGGGTT 57.728 36.000 0.00 0.00 0.00 4.11
4350 4497 7.699878 ACTGTATTAGATTCTTCCAAGGGTTT 58.300 34.615 0.00 0.00 0.00 3.27
4351 4498 7.611855 ACTGTATTAGATTCTTCCAAGGGTTTG 59.388 37.037 0.00 0.00 0.00 2.93
4352 4499 7.695055 TGTATTAGATTCTTCCAAGGGTTTGA 58.305 34.615 0.00 0.00 36.36 2.69
4353 4500 7.610305 TGTATTAGATTCTTCCAAGGGTTTGAC 59.390 37.037 0.00 0.00 36.36 3.18
4354 4501 3.767711 AGATTCTTCCAAGGGTTTGACC 58.232 45.455 0.00 0.00 36.36 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.483640 ACATAATTCAATAACTTCGAGGAGGC 59.516 38.462 0.00 0.00 0.00 4.70
1 2 9.542462 TTACATAATTCAATAACTTCGAGGAGG 57.458 33.333 0.00 0.00 0.00 4.30
118 130 1.423794 TTTTCTCCCCTTCGCCCACT 61.424 55.000 0.00 0.00 0.00 4.00
131 147 8.394667 ACGAAGTTTTTCTCAATGTTTTTCTC 57.605 30.769 0.00 0.00 37.78 2.87
162 195 3.433319 ACGCCGCGTGATATCTCT 58.567 55.556 19.45 0.00 39.18 3.10
249 298 3.585990 GCCCGGCCAACATCATCG 61.586 66.667 2.24 0.00 0.00 3.84
310 359 1.822990 CCACTCATCAGCTGGCAAATT 59.177 47.619 15.13 0.00 0.00 1.82
330 379 4.950205 AAAGGCATCAAATCCATGATCC 57.050 40.909 0.00 0.00 37.96 3.36
374 423 3.699067 CCAAGGTCAAAATGATCATCGC 58.301 45.455 9.06 0.00 27.47 4.58
408 457 0.108585 AGACACATGAAGCAACGGGT 59.891 50.000 0.00 0.00 0.00 5.28
418 467 1.275666 CCCTACACCCAGACACATGA 58.724 55.000 0.00 0.00 0.00 3.07
433 482 2.365635 GAGGGGTGCTCTGCCCTA 60.366 66.667 2.94 0.00 45.39 3.53
531 580 1.228245 TGTTTCTGCCCACTCTGCC 60.228 57.895 0.00 0.00 0.00 4.85
567 616 1.796459 GCAACGACAGATTACAACGGT 59.204 47.619 0.00 0.00 0.00 4.83
620 669 1.464997 GCCGGACAAGAACAAGATGTC 59.535 52.381 5.05 0.00 42.08 3.06
635 684 1.706995 TAAAAGGTGTGGGTGCCGGA 61.707 55.000 5.05 0.00 0.00 5.14
641 692 4.542697 ACAAACATCTAAAAGGTGTGGGT 58.457 39.130 0.00 0.00 0.00 4.51
653 704 9.613428 CCATACAATCTTCCTTACAAACATCTA 57.387 33.333 0.00 0.00 0.00 1.98
659 710 7.007723 ACCAACCATACAATCTTCCTTACAAA 58.992 34.615 0.00 0.00 0.00 2.83
660 711 6.432783 CACCAACCATACAATCTTCCTTACAA 59.567 38.462 0.00 0.00 0.00 2.41
699 750 3.731089 ACAAGTAATTTTGGACGGACGA 58.269 40.909 0.00 0.00 32.32 4.20
708 759 6.539324 TCTATTTCCGCGACAAGTAATTTTG 58.461 36.000 8.23 0.00 0.00 2.44
709 760 6.730960 TCTATTTCCGCGACAAGTAATTTT 57.269 33.333 8.23 0.00 0.00 1.82
787 838 8.798975 ATACTTCCTCCATCTGGAAATACTTA 57.201 34.615 0.00 0.00 44.91 2.24
921 973 1.708993 AAGTTGACAGCCTCCAGCCA 61.709 55.000 0.00 0.00 45.47 4.75
979 1034 1.826487 GGGAGAGACGGAGAGGAGC 60.826 68.421 0.00 0.00 0.00 4.70
986 1041 2.764128 GCATGGGGGAGAGACGGA 60.764 66.667 0.00 0.00 0.00 4.69
1200 1258 3.823330 GGGTCGGCATCGTCGTCT 61.823 66.667 0.00 0.00 37.69 4.18
1266 1324 3.400054 GGGAGGACGGGGTTCCAG 61.400 72.222 0.00 0.00 38.25 3.86
2088 2176 4.335647 ACCCAGGTCAAGCAGCCG 62.336 66.667 0.00 0.00 0.00 5.52
2103 2191 2.161486 GCATCTGAGCACGTCGACC 61.161 63.158 10.58 0.00 0.00 4.79
2191 2280 0.687354 AGGGATAACTAGGCCATGCG 59.313 55.000 5.01 0.00 0.00 4.73
2195 2284 1.768870 GAAGCAGGGATAACTAGGCCA 59.231 52.381 5.01 0.00 0.00 5.36
2196 2285 1.072489 GGAAGCAGGGATAACTAGGCC 59.928 57.143 0.00 0.00 0.00 5.19
2202 2291 4.755266 TTAGTCAGGAAGCAGGGATAAC 57.245 45.455 0.00 0.00 0.00 1.89
2232 2324 4.297299 ACAACATCTGCAACACAAGAAG 57.703 40.909 0.00 0.00 0.00 2.85
2443 2535 9.624697 TTTTCAGTAGTGATAAATTGATTGCAC 57.375 29.630 0.00 0.00 30.85 4.57
2475 2567 5.974158 CCTTCTGACGACATACATCAGTTAG 59.026 44.000 0.00 0.00 39.46 2.34
2490 2582 4.034510 GTCAGCCATTAAATCCTTCTGACG 59.965 45.833 0.00 0.00 39.34 4.35
2508 2603 2.353109 GGAAAGAATTTGCCAGGTCAGC 60.353 50.000 0.00 0.00 40.87 4.26
2625 2743 6.159293 TCGCAATATATAGAAGGTGCTGAAG 58.841 40.000 3.93 0.00 0.00 3.02
2682 2803 9.632807 GATATACAGAAGGTGCTAAAGACTATG 57.367 37.037 0.00 0.00 0.00 2.23
2691 2812 5.768164 TCATCGTGATATACAGAAGGTGCTA 59.232 40.000 0.00 0.00 0.00 3.49
2815 2936 5.336690 GCAATAGTGGAAAGAATTTGCCAGA 60.337 40.000 0.00 0.00 46.67 3.86
2931 3055 9.660180 AACATATAGAAGGTTCTGAAGAGAAAC 57.340 33.333 2.32 0.00 45.16 2.78
2935 3059 8.253810 TCACAACATATAGAAGGTTCTGAAGAG 58.746 37.037 2.32 0.00 38.19 2.85
3004 3129 2.950975 TCGCGATACATACAAGGTGGTA 59.049 45.455 3.71 0.00 0.00 3.25
3049 3174 8.154649 GTGCATAAGGTTAAATATAGCACAGT 57.845 34.615 0.00 0.00 46.42 3.55
3108 3235 7.756722 GCTTATGATTAAATACATGATGGCACC 59.243 37.037 0.00 0.00 0.00 5.01
3109 3236 8.298854 TGCTTATGATTAAATACATGATGGCAC 58.701 33.333 0.00 0.00 0.00 5.01
3133 3260 4.865925 TGAAGCATTTAAGATGCAATGTGC 59.134 37.500 18.49 0.00 46.77 4.57
3140 3267 8.781196 TCATTAGAGATGAAGCATTTAAGATGC 58.219 33.333 12.09 12.09 44.85 3.91
3324 3451 2.192263 AGGTTTTGGTTTGGCTTTCCA 58.808 42.857 0.00 0.00 41.55 3.53
3338 3465 5.995446 ACTCTCTTCACTCAGAAAGGTTTT 58.005 37.500 0.00 0.00 35.40 2.43
3376 3503 0.529833 TTGGCTCTCTTCGCTCAGAG 59.470 55.000 3.17 3.17 41.69 3.35
3883 4026 7.036829 TCGACATTACGGAATGAATTGACTTA 58.963 34.615 27.03 0.00 44.59 2.24
3947 4091 1.807742 CCACAAAAGCATGGCCAAATG 59.192 47.619 10.96 5.55 0.00 2.32
3991 4138 2.592102 ACCAAGATGTGCCATGTTCT 57.408 45.000 0.00 0.00 0.00 3.01
4000 4147 2.624838 AGAACAGGCAAACCAAGATGTG 59.375 45.455 0.00 0.00 39.06 3.21
4002 4149 4.676196 GCATAGAACAGGCAAACCAAGATG 60.676 45.833 0.00 0.00 39.06 2.90
4020 4167 5.172934 ACCAAATTTTGTGATGCTGCATAG 58.827 37.500 16.23 0.00 0.00 2.23
4070 4217 3.632604 ACAGACCATACGACTGTAGGATG 59.367 47.826 6.17 6.17 42.01 3.51
4071 4218 3.899726 ACAGACCATACGACTGTAGGAT 58.100 45.455 0.00 0.00 42.01 3.24
4072 4219 3.361281 ACAGACCATACGACTGTAGGA 57.639 47.619 0.00 0.00 42.01 2.94
4075 4222 4.162888 TCCTCTACAGACCATACGACTGTA 59.837 45.833 0.00 0.00 43.27 2.74
4076 4223 3.054582 TCCTCTACAGACCATACGACTGT 60.055 47.826 0.00 0.00 45.06 3.55
4077 4224 3.542648 TCCTCTACAGACCATACGACTG 58.457 50.000 0.00 0.00 37.62 3.51
4078 4225 3.433882 CCTCCTCTACAGACCATACGACT 60.434 52.174 0.00 0.00 0.00 4.18
4079 4226 2.879646 CCTCCTCTACAGACCATACGAC 59.120 54.545 0.00 0.00 0.00 4.34
4080 4227 2.775960 TCCTCCTCTACAGACCATACGA 59.224 50.000 0.00 0.00 0.00 3.43
4081 4228 3.210232 TCCTCCTCTACAGACCATACG 57.790 52.381 0.00 0.00 0.00 3.06
4082 4229 5.221541 CCATTTCCTCCTCTACAGACCATAC 60.222 48.000 0.00 0.00 0.00 2.39
4083 4230 4.901849 CCATTTCCTCCTCTACAGACCATA 59.098 45.833 0.00 0.00 0.00 2.74
4084 4231 3.713764 CCATTTCCTCCTCTACAGACCAT 59.286 47.826 0.00 0.00 0.00 3.55
4085 4232 3.107601 CCATTTCCTCCTCTACAGACCA 58.892 50.000 0.00 0.00 0.00 4.02
4113 4260 5.012239 TCATGATTATGCCTTAGGAATGCC 58.988 41.667 0.69 0.00 34.21 4.40
4143 4290 4.543692 CAAGTGCAAAGAATCACAAGGAG 58.456 43.478 0.00 0.00 35.76 3.69
4173 4320 9.241919 CCTCCAACACCATAATAAATATATGCA 57.758 33.333 0.00 0.00 0.00 3.96
4174 4321 9.461312 TCCTCCAACACCATAATAAATATATGC 57.539 33.333 0.00 0.00 0.00 3.14
4178 4325 8.806146 GCATTCCTCCAACACCATAATAAATAT 58.194 33.333 0.00 0.00 0.00 1.28
4179 4326 7.232534 GGCATTCCTCCAACACCATAATAAATA 59.767 37.037 0.00 0.00 0.00 1.40
4180 4327 6.041979 GGCATTCCTCCAACACCATAATAAAT 59.958 38.462 0.00 0.00 0.00 1.40
4181 4328 5.362430 GGCATTCCTCCAACACCATAATAAA 59.638 40.000 0.00 0.00 0.00 1.40
4182 4329 4.892934 GGCATTCCTCCAACACCATAATAA 59.107 41.667 0.00 0.00 0.00 1.40
4183 4330 4.469657 GGCATTCCTCCAACACCATAATA 58.530 43.478 0.00 0.00 0.00 0.98
4184 4331 3.299503 GGCATTCCTCCAACACCATAAT 58.700 45.455 0.00 0.00 0.00 1.28
4185 4332 2.622977 GGGCATTCCTCCAACACCATAA 60.623 50.000 0.00 0.00 0.00 1.90
4186 4333 1.064017 GGGCATTCCTCCAACACCATA 60.064 52.381 0.00 0.00 0.00 2.74
4187 4334 0.324645 GGGCATTCCTCCAACACCAT 60.325 55.000 0.00 0.00 0.00 3.55
4188 4335 1.076549 GGGCATTCCTCCAACACCA 59.923 57.895 0.00 0.00 0.00 4.17
4189 4336 2.046285 CGGGCATTCCTCCAACACC 61.046 63.158 0.00 0.00 0.00 4.16
4190 4337 1.002624 TCGGGCATTCCTCCAACAC 60.003 57.895 0.00 0.00 0.00 3.32
4191 4338 1.299648 CTCGGGCATTCCTCCAACA 59.700 57.895 0.00 0.00 0.00 3.33
4192 4339 2.115291 GCTCGGGCATTCCTCCAAC 61.115 63.158 0.00 0.00 38.54 3.77
4193 4340 2.272146 GCTCGGGCATTCCTCCAA 59.728 61.111 0.00 0.00 38.54 3.53
4194 4341 3.008517 TGCTCGGGCATTCCTCCA 61.009 61.111 5.44 0.00 44.28 3.86
4203 4350 2.511145 CTCAAGCTCTGCTCGGGC 60.511 66.667 0.00 0.00 38.25 6.13
4204 4351 1.892819 TTCCTCAAGCTCTGCTCGGG 61.893 60.000 0.00 0.00 38.25 5.14
4205 4352 0.739112 GTTCCTCAAGCTCTGCTCGG 60.739 60.000 0.00 0.00 38.25 4.63
4206 4353 0.246086 AGTTCCTCAAGCTCTGCTCG 59.754 55.000 0.00 0.00 38.25 5.03
4207 4354 1.274728 TCAGTTCCTCAAGCTCTGCTC 59.725 52.381 0.00 0.00 38.25 4.26
4208 4355 1.346062 TCAGTTCCTCAAGCTCTGCT 58.654 50.000 0.00 0.00 42.56 4.24
4209 4356 1.803555 GTTCAGTTCCTCAAGCTCTGC 59.196 52.381 0.00 0.00 0.00 4.26
4210 4357 2.038295 AGGTTCAGTTCCTCAAGCTCTG 59.962 50.000 0.00 0.00 0.00 3.35
4211 4358 2.038295 CAGGTTCAGTTCCTCAAGCTCT 59.962 50.000 0.00 0.00 32.37 4.09
4212 4359 2.421619 CAGGTTCAGTTCCTCAAGCTC 58.578 52.381 0.00 0.00 32.37 4.09
4213 4360 1.544314 GCAGGTTCAGTTCCTCAAGCT 60.544 52.381 0.00 0.00 32.37 3.74
4214 4361 0.877743 GCAGGTTCAGTTCCTCAAGC 59.122 55.000 0.00 0.00 32.37 4.01
4215 4362 2.551459 CAAGCAGGTTCAGTTCCTCAAG 59.449 50.000 0.00 0.00 32.37 3.02
4216 4363 2.575532 CAAGCAGGTTCAGTTCCTCAA 58.424 47.619 0.00 0.00 32.37 3.02
4217 4364 1.815408 GCAAGCAGGTTCAGTTCCTCA 60.815 52.381 0.00 0.00 32.37 3.86
4218 4365 0.877743 GCAAGCAGGTTCAGTTCCTC 59.122 55.000 0.00 0.00 32.37 3.71
4219 4366 0.475906 AGCAAGCAGGTTCAGTTCCT 59.524 50.000 0.00 0.00 35.45 3.36
4220 4367 2.079925 CTAGCAAGCAGGTTCAGTTCC 58.920 52.381 0.00 0.00 0.00 3.62
4221 4368 2.999355 CTCTAGCAAGCAGGTTCAGTTC 59.001 50.000 0.00 0.00 0.00 3.01
4222 4369 2.873649 GCTCTAGCAAGCAGGTTCAGTT 60.874 50.000 0.00 0.00 42.05 3.16
4223 4370 1.338579 GCTCTAGCAAGCAGGTTCAGT 60.339 52.381 0.00 0.00 42.05 3.41
4224 4371 1.367659 GCTCTAGCAAGCAGGTTCAG 58.632 55.000 0.00 0.00 42.05 3.02
4225 4372 3.540211 GCTCTAGCAAGCAGGTTCA 57.460 52.632 0.00 0.00 42.05 3.18
4236 4383 5.363979 AGCAAGTTTAAAAGTGCTCTAGC 57.636 39.130 17.14 0.00 42.50 3.42
4239 4386 9.067986 AGTAATAAGCAAGTTTAAAAGTGCTCT 57.932 29.630 21.09 13.50 0.00 4.09
4242 4389 9.556030 CCTAGTAATAAGCAAGTTTAAAAGTGC 57.444 33.333 13.85 13.85 0.00 4.40
4282 4429 8.365647 CCTACAAACTCAACGTTCCCTATATAT 58.634 37.037 0.00 0.00 33.90 0.86
4283 4430 7.342799 ACCTACAAACTCAACGTTCCCTATATA 59.657 37.037 0.00 0.00 33.90 0.86
4284 4431 6.155737 ACCTACAAACTCAACGTTCCCTATAT 59.844 38.462 0.00 0.00 33.90 0.86
4285 4432 5.481473 ACCTACAAACTCAACGTTCCCTATA 59.519 40.000 0.00 0.00 33.90 1.31
4286 4433 4.285260 ACCTACAAACTCAACGTTCCCTAT 59.715 41.667 0.00 0.00 33.90 2.57
4287 4434 3.642848 ACCTACAAACTCAACGTTCCCTA 59.357 43.478 0.00 0.00 33.90 3.53
4288 4435 2.436911 ACCTACAAACTCAACGTTCCCT 59.563 45.455 0.00 0.00 33.90 4.20
4289 4436 2.842457 ACCTACAAACTCAACGTTCCC 58.158 47.619 0.00 0.00 33.90 3.97
4290 4437 3.624410 ACAACCTACAAACTCAACGTTCC 59.376 43.478 0.00 0.00 33.90 3.62
4291 4438 4.330620 TGACAACCTACAAACTCAACGTTC 59.669 41.667 0.00 0.00 33.90 3.95
4292 4439 4.255301 TGACAACCTACAAACTCAACGTT 58.745 39.130 0.00 0.00 37.47 3.99
4293 4440 3.864243 TGACAACCTACAAACTCAACGT 58.136 40.909 0.00 0.00 0.00 3.99
4294 4441 4.868450 TTGACAACCTACAAACTCAACG 57.132 40.909 0.00 0.00 0.00 4.10
4295 4442 9.744468 AATATTTTGACAACCTACAAACTCAAC 57.256 29.630 0.00 0.00 36.06 3.18
4297 4444 9.743057 CAAATATTTTGACAACCTACAAACTCA 57.257 29.630 0.00 0.00 36.06 3.41
4298 4445 9.744468 ACAAATATTTTGACAACCTACAAACTC 57.256 29.630 6.96 0.00 36.06 3.01
4303 4450 9.344772 ACAGTACAAATATTTTGACAACCTACA 57.655 29.630 6.96 0.00 0.00 2.74
4320 4467 9.667107 CCTTGGAAGAATCTAATACAGTACAAA 57.333 33.333 0.00 0.00 0.00 2.83
4321 4468 8.265055 CCCTTGGAAGAATCTAATACAGTACAA 58.735 37.037 0.00 0.00 0.00 2.41
4322 4469 7.402071 ACCCTTGGAAGAATCTAATACAGTACA 59.598 37.037 0.00 0.00 0.00 2.90
4323 4470 7.793036 ACCCTTGGAAGAATCTAATACAGTAC 58.207 38.462 0.00 0.00 0.00 2.73
4324 4471 7.989947 ACCCTTGGAAGAATCTAATACAGTA 57.010 36.000 0.00 0.00 0.00 2.74
4325 4472 6.893020 ACCCTTGGAAGAATCTAATACAGT 57.107 37.500 0.00 0.00 0.00 3.55
4326 4473 7.829211 TCAAACCCTTGGAAGAATCTAATACAG 59.171 37.037 0.00 0.00 33.01 2.74
4327 4474 7.610305 GTCAAACCCTTGGAAGAATCTAATACA 59.390 37.037 0.00 0.00 33.01 2.29
4328 4475 7.067129 GGTCAAACCCTTGGAAGAATCTAATAC 59.933 40.741 0.00 0.00 33.01 1.89
4329 4476 7.116736 GGTCAAACCCTTGGAAGAATCTAATA 58.883 38.462 0.00 0.00 33.01 0.98
4330 4477 5.952347 GGTCAAACCCTTGGAAGAATCTAAT 59.048 40.000 0.00 0.00 33.01 1.73
4331 4478 5.321927 GGTCAAACCCTTGGAAGAATCTAA 58.678 41.667 0.00 0.00 33.01 2.10
4332 4479 4.918588 GGTCAAACCCTTGGAAGAATCTA 58.081 43.478 0.00 0.00 33.01 1.98
4333 4480 3.767711 GGTCAAACCCTTGGAAGAATCT 58.232 45.455 0.00 0.00 33.01 2.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.