Multiple sequence alignment - TraesCS4A01G328200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G328200 chr4A 100.000 4267 0 0 1 4267 614030756 614026490 0.000000e+00 7880.0
1 TraesCS4A01G328200 chr4A 91.613 155 11 2 2044 2198 542783424 542783272 3.340000e-51 213.0
2 TraesCS4A01G328200 chr4A 97.959 49 1 0 2589 2637 662288004 662288052 7.600000e-13 86.1
3 TraesCS4A01G328200 chr5D 93.270 2095 110 8 2199 4267 554505873 554507962 0.000000e+00 3059.0
4 TraesCS4A01G328200 chr5D 92.288 765 32 7 832 1589 554504588 554505332 0.000000e+00 1061.0
5 TraesCS4A01G328200 chr5D 84.547 783 58 31 1 783 554503774 554504493 0.000000e+00 717.0
6 TraesCS4A01G328200 chr5D 92.473 279 12 3 1777 2047 554505604 554505881 1.440000e-104 390.0
7 TraesCS4A01G328200 chr5B 92.257 2105 103 18 2199 4267 696177363 696175283 0.000000e+00 2929.0
8 TraesCS4A01G328200 chr5B 92.439 820 33 14 779 1587 696178623 696177822 0.000000e+00 1144.0
9 TraesCS4A01G328200 chr5B 90.612 245 12 6 1777 2013 696177604 696177363 8.910000e-82 315.0
10 TraesCS4A01G328200 chr5B 81.818 374 44 13 2207 2580 690649969 690649620 4.170000e-75 292.0
11 TraesCS4A01G328200 chr5B 82.840 338 21 20 1 322 696179328 696179012 7.030000e-68 268.0
12 TraesCS4A01G328200 chr5B 92.727 110 8 0 336 445 696178912 696178803 4.420000e-35 159.0
13 TraesCS4A01G328200 chr5B 95.238 42 2 0 2598 2639 544776126 544776085 2.750000e-07 67.6
14 TraesCS4A01G328200 chr1A 82.888 374 42 11 2207 2580 590841426 590841075 2.480000e-82 316.0
15 TraesCS4A01G328200 chr1A 94.737 152 8 0 2048 2199 436420955 436421106 1.980000e-58 237.0
16 TraesCS4A01G328200 chr1A 88.462 78 7 2 2656 2733 590841052 590840977 4.540000e-15 93.5
17 TraesCS4A01G328200 chr1A 90.196 51 3 2 2589 2639 256822018 256822066 9.900000e-07 65.8
18 TraesCS4A01G328200 chr6D 97.351 151 4 0 2048 2198 420705809 420705959 1.520000e-64 257.0
19 TraesCS4A01G328200 chr6D 84.615 156 21 3 2048 2202 20769527 20769680 7.390000e-33 152.0
20 TraesCS4A01G328200 chr2B 92.222 180 10 3 2039 2215 546207470 546207648 7.080000e-63 252.0
21 TraesCS4A01G328200 chr2B 94.231 156 8 1 2047 2202 394319059 394318905 1.980000e-58 237.0
22 TraesCS4A01G328200 chr2B 86.957 184 22 2 1416 1599 674066724 674066543 5.590000e-49 206.0
23 TraesCS4A01G328200 chr2D 84.861 251 33 4 1779 2025 412044388 412044637 9.160000e-62 248.0
24 TraesCS4A01G328200 chr2D 83.010 206 31 3 1824 2025 81953190 81953395 2.620000e-42 183.0
25 TraesCS4A01G328200 chr4D 94.737 152 8 0 2047 2198 347516144 347515993 1.980000e-58 237.0
26 TraesCS4A01G328200 chr4B 86.413 184 23 2 1416 1599 563997714 563997533 2.600000e-47 200.0
27 TraesCS4A01G328200 chr3B 86.441 177 22 2 1407 1583 543184180 543184354 4.350000e-45 193.0
28 TraesCS4A01G328200 chr7D 85.987 157 18 3 2048 2202 261805472 261805318 9.490000e-37 165.0
29 TraesCS4A01G328200 chr2A 84.516 155 8 9 2050 2200 640268520 640268662 5.750000e-29 139.0
30 TraesCS4A01G328200 chr5A 100.000 34 0 0 2608 2641 524241949 524241916 3.560000e-06 63.9
31 TraesCS4A01G328200 chr3D 100.000 31 0 0 2609 2639 515551193 515551223 1.660000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G328200 chr4A 614026490 614030756 4266 True 7880.00 7880 100.0000 1 4267 1 chr4A.!!$R2 4266
1 TraesCS4A01G328200 chr5D 554503774 554507962 4188 False 1306.75 3059 90.6445 1 4267 4 chr5D.!!$F1 4266
2 TraesCS4A01G328200 chr5B 696175283 696179328 4045 True 963.00 2929 90.1750 1 4267 5 chr5B.!!$R3 4266

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
985 1171 0.179124 GGACTCATCTGACGACTGCC 60.179 60.0 0.00 0.00 0.00 4.85 F
1680 1946 0.983467 TCTTCTGGGCAGTGCATACA 59.017 50.0 18.61 11.53 0.00 2.29 F
2072 2370 0.033920 TGCTCTGCACACGATTGACT 59.966 50.0 0.00 0.00 31.71 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2053 2351 0.033920 AGTCAATCGTGTGCAGAGCA 59.966 50.0 0.00 0.00 35.6 4.26 R
3051 3355 0.036952 AAGCTGAGATGTCCCACGTG 60.037 55.0 9.08 9.08 0.0 4.49 R
4036 4368 0.036483 ACACGCCATGCACATAGTCA 60.036 50.0 0.00 0.00 0.0 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 3.475575 TGTGCTGTTTGCTGTCATAGAA 58.524 40.909 0.00 0.00 43.37 2.10
110 111 0.874390 TGCTGCAATTTCCTGTCGAC 59.126 50.000 9.11 9.11 0.00 4.20
112 113 1.537202 GCTGCAATTTCCTGTCGACTT 59.463 47.619 17.92 0.00 0.00 3.01
131 133 2.760159 CGTGCTATTTGGTGCCCCG 61.760 63.158 0.00 0.00 0.00 5.73
146 148 0.611896 CCCCGAAATGAGGCAAGGTT 60.612 55.000 0.00 0.00 0.00 3.50
162 164 4.567971 CAAGGTTATGCCAATTTCTTGCA 58.432 39.130 0.00 0.00 40.61 4.08
179 193 1.207570 TGCAGCCAAAATAGCAATGGG 59.792 47.619 0.00 0.00 34.71 4.00
188 202 5.829924 CCAAAATAGCAATGGGATCACTAGT 59.170 40.000 0.00 0.00 0.00 2.57
189 203 6.998074 CCAAAATAGCAATGGGATCACTAGTA 59.002 38.462 0.00 0.00 0.00 1.82
190 204 7.041098 CCAAAATAGCAATGGGATCACTAGTAC 60.041 40.741 0.00 0.00 0.00 2.73
228 242 7.719633 GTGTGATAATAACATCAGGGTGGTAAT 59.280 37.037 0.00 0.00 35.63 1.89
229 243 8.278639 TGTGATAATAACATCAGGGTGGTAATT 58.721 33.333 0.00 0.00 35.63 1.40
230 244 8.567948 GTGATAATAACATCAGGGTGGTAATTG 58.432 37.037 0.00 0.00 35.63 2.32
231 245 7.723616 TGATAATAACATCAGGGTGGTAATTGG 59.276 37.037 0.00 0.00 31.34 3.16
232 246 3.825908 AACATCAGGGTGGTAATTGGT 57.174 42.857 0.00 0.00 0.00 3.67
233 247 4.938575 AACATCAGGGTGGTAATTGGTA 57.061 40.909 0.00 0.00 0.00 3.25
234 248 4.938575 ACATCAGGGTGGTAATTGGTAA 57.061 40.909 0.00 0.00 0.00 2.85
289 303 1.204704 ACGAGCCGATGAACATCTTGA 59.795 47.619 12.05 0.00 35.72 3.02
293 313 2.357009 AGCCGATGAACATCTTGAATGC 59.643 45.455 12.05 5.97 35.72 3.56
315 340 2.048503 CTTTGCTTGCTGCTGCCC 60.049 61.111 13.47 2.32 43.37 5.36
317 342 2.765250 CTTTGCTTGCTGCTGCCCTG 62.765 60.000 13.47 4.35 43.37 4.45
390 501 2.747686 CCTGGCCACGTACTGGTT 59.252 61.111 0.00 0.00 42.99 3.67
441 552 2.507944 GGCTCGATCCATGGCTGT 59.492 61.111 6.96 0.00 0.00 4.40
454 565 1.805945 GGCTGTGGCGTAGAACTCG 60.806 63.158 0.00 0.00 39.81 4.18
460 571 4.281946 GCGTAGAACTCGCGGTAG 57.718 61.111 6.13 0.00 43.94 3.18
461 572 1.427020 GCGTAGAACTCGCGGTAGT 59.573 57.895 6.13 0.00 43.94 2.73
473 584 1.751927 CGGTAGTACCTGGGACGCT 60.752 63.158 17.29 0.00 35.66 5.07
526 637 1.344953 TGTAGGGGCTCGCCATCATT 61.345 55.000 10.51 0.00 37.98 2.57
531 642 1.669999 GGGCTCGCCATCATTTGCTT 61.670 55.000 10.51 0.00 37.98 3.91
532 643 0.526954 GGCTCGCCATCATTTGCTTG 60.527 55.000 2.41 0.00 35.81 4.01
559 670 1.226717 CTGCGGTAGCCTCGTCTTC 60.227 63.158 0.00 0.00 44.33 2.87
564 675 0.824759 GGTAGCCTCGTCTTCACCAT 59.175 55.000 0.00 0.00 0.00 3.55
572 683 3.516615 CTCGTCTTCACCATCTTCTTCC 58.483 50.000 0.00 0.00 0.00 3.46
574 685 3.578716 TCGTCTTCACCATCTTCTTCCTT 59.421 43.478 0.00 0.00 0.00 3.36
575 686 4.040461 TCGTCTTCACCATCTTCTTCCTTT 59.960 41.667 0.00 0.00 0.00 3.11
576 687 4.757149 CGTCTTCACCATCTTCTTCCTTTT 59.243 41.667 0.00 0.00 0.00 2.27
577 688 5.106908 CGTCTTCACCATCTTCTTCCTTTTC 60.107 44.000 0.00 0.00 0.00 2.29
578 689 6.000840 GTCTTCACCATCTTCTTCCTTTTCT 58.999 40.000 0.00 0.00 0.00 2.52
579 690 6.488344 GTCTTCACCATCTTCTTCCTTTTCTT 59.512 38.462 0.00 0.00 0.00 2.52
581 692 6.192970 TCACCATCTTCTTCCTTTTCTTCT 57.807 37.500 0.00 0.00 0.00 2.85
584 695 6.007076 ACCATCTTCTTCCTTTTCTTCTTCC 58.993 40.000 0.00 0.00 0.00 3.46
585 696 5.417266 CCATCTTCTTCCTTTTCTTCTTCCC 59.583 44.000 0.00 0.00 0.00 3.97
586 697 4.642429 TCTTCTTCCTTTTCTTCTTCCCG 58.358 43.478 0.00 0.00 0.00 5.14
587 698 3.418684 TCTTCCTTTTCTTCTTCCCGG 57.581 47.619 0.00 0.00 0.00 5.73
588 699 1.813178 CTTCCTTTTCTTCTTCCCGGC 59.187 52.381 0.00 0.00 0.00 6.13
589 700 1.064825 TCCTTTTCTTCTTCCCGGCT 58.935 50.000 0.00 0.00 0.00 5.52
590 701 1.003233 TCCTTTTCTTCTTCCCGGCTC 59.997 52.381 0.00 0.00 0.00 4.70
591 702 1.454201 CTTTTCTTCTTCCCGGCTCC 58.546 55.000 0.00 0.00 0.00 4.70
592 703 0.321298 TTTTCTTCTTCCCGGCTCCG 60.321 55.000 0.00 0.48 39.44 4.63
628 739 1.301401 CTTCGTGCCCGGTGAAAGA 60.301 57.895 0.00 0.00 33.95 2.52
629 740 0.673644 CTTCGTGCCCGGTGAAAGAT 60.674 55.000 0.00 0.00 33.95 2.40
631 742 2.106683 CGTGCCCGGTGAAAGATCC 61.107 63.158 0.00 0.00 0.00 3.36
632 743 2.106683 GTGCCCGGTGAAAGATCCG 61.107 63.158 0.00 0.00 45.42 4.18
824 999 0.316689 GTGACGGTTCGCCAAAACAG 60.317 55.000 0.00 0.00 37.00 3.16
825 1000 1.281656 GACGGTTCGCCAAAACAGG 59.718 57.895 0.00 0.00 37.00 4.00
835 1010 1.597027 CAAAACAGGACCCGTCGCT 60.597 57.895 0.00 0.00 0.00 4.93
913 1089 3.443045 AAGGCCGCCGCAATCTTG 61.443 61.111 3.05 0.00 36.38 3.02
958 1138 3.394719 ACTTTGACTTCTTTCTCCGCTC 58.605 45.455 0.00 0.00 0.00 5.03
959 1139 2.457366 TTGACTTCTTTCTCCGCTCC 57.543 50.000 0.00 0.00 0.00 4.70
985 1171 0.179124 GGACTCATCTGACGACTGCC 60.179 60.000 0.00 0.00 0.00 4.85
993 1179 3.386237 GACGACTGCCCTGCTCCT 61.386 66.667 0.00 0.00 0.00 3.69
994 1180 2.037367 ACGACTGCCCTGCTCCTA 59.963 61.111 0.00 0.00 0.00 2.94
1010 1202 3.476031 CTAATCCCATGGCGGCGGT 62.476 63.158 9.78 0.00 0.00 5.68
1524 1716 1.371389 GTTCAACGTCGTCGAGCCT 60.371 57.895 9.47 0.00 40.62 4.58
1560 1752 3.454447 TCGGGAAGAAGGATTATCAGCAA 59.546 43.478 0.00 0.00 0.00 3.91
1584 1776 1.293924 GTCTCATCTGCCGAATGGTG 58.706 55.000 0.00 0.00 37.67 4.17
1589 1781 2.499693 TCATCTGCCGAATGGTGAGTAA 59.500 45.455 0.00 0.00 37.67 2.24
1592 1784 2.002586 CTGCCGAATGGTGAGTAACAG 58.997 52.381 0.00 0.00 37.67 3.16
1593 1785 1.621317 TGCCGAATGGTGAGTAACAGA 59.379 47.619 0.00 0.00 37.67 3.41
1595 1787 3.270877 GCCGAATGGTGAGTAACAGAAT 58.729 45.455 0.00 0.00 37.67 2.40
1596 1788 3.689649 GCCGAATGGTGAGTAACAGAATT 59.310 43.478 0.00 0.00 37.67 2.17
1599 1791 5.411361 CCGAATGGTGAGTAACAGAATTTGA 59.589 40.000 0.00 0.00 0.00 2.69
1600 1792 6.307155 CGAATGGTGAGTAACAGAATTTGAC 58.693 40.000 0.00 0.00 0.00 3.18
1601 1793 6.073276 CGAATGGTGAGTAACAGAATTTGACA 60.073 38.462 0.00 0.00 0.00 3.58
1603 1795 7.765695 ATGGTGAGTAACAGAATTTGACAAT 57.234 32.000 0.00 0.00 0.00 2.71
1604 1796 7.581213 TGGTGAGTAACAGAATTTGACAATT 57.419 32.000 0.00 0.00 35.12 2.32
1606 1798 8.564574 TGGTGAGTAACAGAATTTGACAATTAC 58.435 33.333 0.00 0.00 32.35 1.89
1607 1799 8.784043 GGTGAGTAACAGAATTTGACAATTACT 58.216 33.333 8.62 8.62 34.85 2.24
1610 1802 9.612620 GAGTAACAGAATTTGACAATTACTTGG 57.387 33.333 9.75 0.00 36.64 3.61
1612 1804 6.345096 ACAGAATTTGACAATTACTTGGGG 57.655 37.500 0.00 0.00 36.64 4.96
1613 1805 6.074648 ACAGAATTTGACAATTACTTGGGGA 58.925 36.000 0.00 0.00 36.64 4.81
1614 1806 6.209391 ACAGAATTTGACAATTACTTGGGGAG 59.791 38.462 0.00 0.00 36.64 4.30
1615 1807 6.209391 CAGAATTTGACAATTACTTGGGGAGT 59.791 38.462 0.00 0.00 42.55 3.85
1617 1809 7.947890 AGAATTTGACAATTACTTGGGGAGTTA 59.052 33.333 0.00 0.00 39.86 2.24
1618 1810 6.887626 TTTGACAATTACTTGGGGAGTTAC 57.112 37.500 0.00 0.00 39.86 2.50
1619 1811 5.570205 TGACAATTACTTGGGGAGTTACA 57.430 39.130 0.00 0.00 39.86 2.41
1620 1812 5.556915 TGACAATTACTTGGGGAGTTACAG 58.443 41.667 0.00 0.00 39.86 2.74
1622 1814 6.012858 TGACAATTACTTGGGGAGTTACAGAT 60.013 38.462 0.00 0.00 39.86 2.90
1623 1815 6.415573 ACAATTACTTGGGGAGTTACAGATC 58.584 40.000 0.00 0.00 39.86 2.75
1633 1825 3.835395 GGAGTTACAGATCCCCTAGATGG 59.165 52.174 0.00 0.00 34.42 3.51
1634 1826 4.449376 GGAGTTACAGATCCCCTAGATGGA 60.449 50.000 3.75 3.75 38.35 3.41
1635 1827 4.484912 AGTTACAGATCCCCTAGATGGAC 58.515 47.826 3.38 0.00 38.35 4.02
1636 1828 4.078571 AGTTACAGATCCCCTAGATGGACA 60.079 45.833 3.38 0.00 38.35 4.02
1637 1829 2.969628 ACAGATCCCCTAGATGGACAG 58.030 52.381 3.38 0.71 38.35 3.51
1652 1918 6.725364 AGATGGACAGTTTTGATAACCTGAT 58.275 36.000 0.00 0.00 0.00 2.90
1653 1919 7.861629 AGATGGACAGTTTTGATAACCTGATA 58.138 34.615 0.00 0.00 0.00 2.15
1654 1920 8.328758 AGATGGACAGTTTTGATAACCTGATAA 58.671 33.333 0.00 0.00 0.00 1.75
1655 1921 7.921786 TGGACAGTTTTGATAACCTGATAAG 57.078 36.000 0.00 0.00 0.00 1.73
1656 1922 7.458397 TGGACAGTTTTGATAACCTGATAAGT 58.542 34.615 0.00 0.00 0.00 2.24
1670 1936 5.059833 CCTGATAAGTACATTCTTCTGGGC 58.940 45.833 0.00 0.00 0.00 5.36
1679 1945 2.113860 TTCTTCTGGGCAGTGCATAC 57.886 50.000 18.61 7.10 0.00 2.39
1680 1946 0.983467 TCTTCTGGGCAGTGCATACA 59.017 50.000 18.61 11.53 0.00 2.29
1687 1966 2.632028 TGGGCAGTGCATACAAATGTTT 59.368 40.909 18.61 0.00 35.38 2.83
1688 1967 3.070734 TGGGCAGTGCATACAAATGTTTT 59.929 39.130 18.61 0.00 35.38 2.43
1689 1968 4.064388 GGGCAGTGCATACAAATGTTTTT 58.936 39.130 18.61 0.00 35.38 1.94
1718 1997 2.297033 GCAGTTTTGCCTCCATTTCAGA 59.703 45.455 0.00 0.00 44.74 3.27
1719 1998 3.056322 GCAGTTTTGCCTCCATTTCAGAT 60.056 43.478 0.00 0.00 44.74 2.90
1720 1999 4.491676 CAGTTTTGCCTCCATTTCAGATG 58.508 43.478 0.00 0.00 0.00 2.90
1721 2000 3.056322 AGTTTTGCCTCCATTTCAGATGC 60.056 43.478 0.00 0.00 0.00 3.91
1722 2001 2.519771 TTGCCTCCATTTCAGATGCT 57.480 45.000 0.00 0.00 0.00 3.79
1723 2002 2.048444 TGCCTCCATTTCAGATGCTC 57.952 50.000 0.00 0.00 0.00 4.26
1725 2004 1.948145 GCCTCCATTTCAGATGCTCTG 59.052 52.381 6.79 6.79 45.59 3.35
1735 2014 2.073252 AGATGCTCTGACGGATACCA 57.927 50.000 0.00 0.00 0.00 3.25
1736 2015 2.603021 AGATGCTCTGACGGATACCAT 58.397 47.619 0.00 0.00 0.00 3.55
1742 2021 1.409064 TCTGACGGATACCATGTCTGC 59.591 52.381 0.00 0.00 33.28 4.26
1751 2030 4.702131 GGATACCATGTCTGCTTCTGTTTT 59.298 41.667 0.00 0.00 0.00 2.43
1760 2039 3.058708 TCTGCTTCTGTTTTGATGCTTCG 60.059 43.478 0.00 0.00 37.79 3.79
1761 2040 2.030893 TGCTTCTGTTTTGATGCTTCGG 60.031 45.455 0.00 0.00 37.79 4.30
1765 2044 1.215382 GTTTTGATGCTTCGGGCCC 59.785 57.895 13.57 13.57 40.92 5.80
1768 2047 3.680620 TTGATGCTTCGGGCCCTCG 62.681 63.158 22.43 7.80 40.92 4.63
1774 2053 2.604079 TTCGGGCCCTCGGTTACA 60.604 61.111 22.43 0.00 0.00 2.41
1782 2072 3.434596 GGGCCCTCGGTTACATTAATTCT 60.435 47.826 17.04 0.00 0.00 2.40
1783 2073 3.564225 GGCCCTCGGTTACATTAATTCTG 59.436 47.826 0.00 0.00 0.00 3.02
1785 2075 4.638865 GCCCTCGGTTACATTAATTCTGTT 59.361 41.667 0.00 0.00 0.00 3.16
1803 2093 8.715191 ATTCTGTTAGCTCAGAGTATTTTCAG 57.285 34.615 5.38 2.04 43.85 3.02
1817 2107 7.715249 AGAGTATTTTCAGTTGCTTCAGTTACA 59.285 33.333 0.00 0.00 0.00 2.41
1959 2257 2.026729 CCTGAGGAAAGGGAGAAGGTTC 60.027 54.545 0.00 0.00 33.28 3.62
2019 2317 1.593196 TCTGACTTTTGAAGGGTGCG 58.407 50.000 0.00 0.00 0.00 5.34
2042 2340 6.958752 GCGTTTACAAAAGACAGCAAAATTTT 59.041 30.769 0.00 0.00 0.00 1.82
2043 2341 8.111224 GCGTTTACAAAAGACAGCAAAATTTTA 58.889 29.630 2.44 0.00 0.00 1.52
2044 2342 9.959775 CGTTTACAAAAGACAGCAAAATTTTAA 57.040 25.926 2.44 0.00 0.00 1.52
2049 2347 9.092876 ACAAAAGACAGCAAAATTTTAAATCGA 57.907 25.926 2.44 0.00 0.00 3.59
2050 2348 9.913451 CAAAAGACAGCAAAATTTTAAATCGAA 57.087 25.926 2.44 0.00 0.00 3.71
2053 2351 8.871686 AGACAGCAAAATTTTAAATCGAAAGT 57.128 26.923 2.44 0.00 0.00 2.66
2054 2352 8.755018 AGACAGCAAAATTTTAAATCGAAAGTG 58.245 29.630 2.44 0.00 0.00 3.16
2055 2353 7.344441 ACAGCAAAATTTTAAATCGAAAGTGC 58.656 30.769 2.44 0.00 0.00 4.40
2056 2354 7.224557 ACAGCAAAATTTTAAATCGAAAGTGCT 59.775 29.630 2.44 1.54 35.09 4.40
2057 2355 7.737311 CAGCAAAATTTTAAATCGAAAGTGCTC 59.263 33.333 2.44 0.00 33.75 4.26
2058 2356 7.653311 AGCAAAATTTTAAATCGAAAGTGCTCT 59.347 29.630 2.44 0.00 32.06 4.09
2059 2357 7.737311 GCAAAATTTTAAATCGAAAGTGCTCTG 59.263 33.333 2.44 0.00 0.00 3.35
2060 2358 6.934561 AATTTTAAATCGAAAGTGCTCTGC 57.065 33.333 0.00 0.00 0.00 4.26
2061 2359 5.431420 TTTTAAATCGAAAGTGCTCTGCA 57.569 34.783 0.00 0.00 35.60 4.41
2071 2369 2.532186 TGCTCTGCACACGATTGAC 58.468 52.632 0.00 0.00 31.71 3.18
2072 2370 0.033920 TGCTCTGCACACGATTGACT 59.966 50.000 0.00 0.00 31.71 3.41
2073 2371 0.441533 GCTCTGCACACGATTGACTG 59.558 55.000 0.00 0.00 0.00 3.51
2074 2372 0.441533 CTCTGCACACGATTGACTGC 59.558 55.000 0.00 0.00 0.00 4.40
2075 2373 0.033920 TCTGCACACGATTGACTGCT 59.966 50.000 0.00 0.00 0.00 4.24
2076 2374 0.165295 CTGCACACGATTGACTGCTG 59.835 55.000 0.00 0.00 0.00 4.41
2077 2375 1.229975 TGCACACGATTGACTGCTGG 61.230 55.000 0.00 0.00 0.00 4.85
2078 2376 0.950555 GCACACGATTGACTGCTGGA 60.951 55.000 0.00 0.00 0.00 3.86
2079 2377 0.792640 CACACGATTGACTGCTGGAC 59.207 55.000 0.00 0.00 0.00 4.02
2080 2378 0.667487 ACACGATTGACTGCTGGACG 60.667 55.000 0.00 0.00 0.00 4.79
2081 2379 0.388520 CACGATTGACTGCTGGACGA 60.389 55.000 0.00 0.00 0.00 4.20
2082 2380 0.532573 ACGATTGACTGCTGGACGAT 59.467 50.000 0.00 0.00 0.00 3.73
2083 2381 1.066858 ACGATTGACTGCTGGACGATT 60.067 47.619 0.00 0.00 0.00 3.34
2084 2382 2.002586 CGATTGACTGCTGGACGATTT 58.997 47.619 0.00 0.00 0.00 2.17
2085 2383 2.222886 CGATTGACTGCTGGACGATTTG 60.223 50.000 0.00 0.00 0.00 2.32
2086 2384 2.254546 TTGACTGCTGGACGATTTGT 57.745 45.000 0.00 0.00 0.00 2.83
2087 2385 1.511850 TGACTGCTGGACGATTTGTG 58.488 50.000 0.00 0.00 0.00 3.33
2088 2386 0.166814 GACTGCTGGACGATTTGTGC 59.833 55.000 0.00 0.00 39.78 4.57
2089 2387 1.237285 ACTGCTGGACGATTTGTGCC 61.237 55.000 0.00 0.00 38.31 5.01
2090 2388 0.957395 CTGCTGGACGATTTGTGCCT 60.957 55.000 0.00 0.00 38.31 4.75
2091 2389 1.236616 TGCTGGACGATTTGTGCCTG 61.237 55.000 0.00 0.00 38.31 4.85
2092 2390 0.955428 GCTGGACGATTTGTGCCTGA 60.955 55.000 0.00 0.00 38.31 3.86
2093 2391 0.798776 CTGGACGATTTGTGCCTGAC 59.201 55.000 0.00 0.00 38.31 3.51
2094 2392 0.948623 TGGACGATTTGTGCCTGACG 60.949 55.000 0.00 0.00 38.31 4.35
2095 2393 1.635663 GGACGATTTGTGCCTGACGG 61.636 60.000 0.00 0.00 31.75 4.79
2096 2394 1.635663 GACGATTTGTGCCTGACGGG 61.636 60.000 0.00 0.00 38.36 5.28
2097 2395 1.375396 CGATTTGTGCCTGACGGGA 60.375 57.895 3.84 0.00 37.23 5.14
2098 2396 1.361668 CGATTTGTGCCTGACGGGAG 61.362 60.000 3.84 0.00 37.23 4.30
2099 2397 1.648467 GATTTGTGCCTGACGGGAGC 61.648 60.000 3.84 0.00 37.23 4.70
2100 2398 2.410322 ATTTGTGCCTGACGGGAGCA 62.410 55.000 3.84 0.00 37.23 4.26
2101 2399 3.535629 TTGTGCCTGACGGGAGCAG 62.536 63.158 3.84 0.00 37.15 4.24
2106 2404 4.154347 CTGACGGGAGCAGGAGCC 62.154 72.222 0.00 0.00 43.56 4.70
2108 2406 4.459089 GACGGGAGCAGGAGCCAC 62.459 72.222 0.00 0.00 43.56 5.01
2110 2408 4.767255 CGGGAGCAGGAGCCACAC 62.767 72.222 0.00 0.00 43.56 3.82
2111 2409 3.640407 GGGAGCAGGAGCCACACA 61.640 66.667 0.00 0.00 43.56 3.72
2112 2410 2.046507 GGAGCAGGAGCCACACAG 60.047 66.667 0.00 0.00 43.56 3.66
2113 2411 2.587247 GGAGCAGGAGCCACACAGA 61.587 63.158 0.00 0.00 43.56 3.41
2114 2412 1.601171 GAGCAGGAGCCACACAGAT 59.399 57.895 0.00 0.00 43.56 2.90
2115 2413 0.035630 GAGCAGGAGCCACACAGATT 60.036 55.000 0.00 0.00 43.56 2.40
2116 2414 1.208052 GAGCAGGAGCCACACAGATTA 59.792 52.381 0.00 0.00 43.56 1.75
2117 2415 1.630369 AGCAGGAGCCACACAGATTAA 59.370 47.619 0.00 0.00 43.56 1.40
2118 2416 2.040278 AGCAGGAGCCACACAGATTAAA 59.960 45.455 0.00 0.00 43.56 1.52
2119 2417 2.819608 GCAGGAGCCACACAGATTAAAA 59.180 45.455 0.00 0.00 33.58 1.52
2120 2418 3.255642 GCAGGAGCCACACAGATTAAAAA 59.744 43.478 0.00 0.00 33.58 1.94
2121 2419 4.798574 CAGGAGCCACACAGATTAAAAAC 58.201 43.478 0.00 0.00 0.00 2.43
2122 2420 3.826729 AGGAGCCACACAGATTAAAAACC 59.173 43.478 0.00 0.00 0.00 3.27
2123 2421 3.056821 GGAGCCACACAGATTAAAAACCC 60.057 47.826 0.00 0.00 0.00 4.11
2124 2422 2.897326 AGCCACACAGATTAAAAACCCC 59.103 45.455 0.00 0.00 0.00 4.95
2125 2423 2.630580 GCCACACAGATTAAAAACCCCA 59.369 45.455 0.00 0.00 0.00 4.96
2126 2424 3.306019 GCCACACAGATTAAAAACCCCAG 60.306 47.826 0.00 0.00 0.00 4.45
2127 2425 3.306019 CCACACAGATTAAAAACCCCAGC 60.306 47.826 0.00 0.00 0.00 4.85
2128 2426 3.573967 CACACAGATTAAAAACCCCAGCT 59.426 43.478 0.00 0.00 0.00 4.24
2129 2427 3.573967 ACACAGATTAAAAACCCCAGCTG 59.426 43.478 6.78 6.78 0.00 4.24
2130 2428 3.826157 CACAGATTAAAAACCCCAGCTGA 59.174 43.478 17.39 0.00 0.00 4.26
2131 2429 4.463891 CACAGATTAAAAACCCCAGCTGAT 59.536 41.667 17.39 0.00 0.00 2.90
2132 2430 4.706962 ACAGATTAAAAACCCCAGCTGATC 59.293 41.667 17.39 6.72 0.00 2.92
2133 2431 4.098501 CAGATTAAAAACCCCAGCTGATCC 59.901 45.833 17.39 0.00 0.00 3.36
2134 2432 3.825908 TTAAAAACCCCAGCTGATCCT 57.174 42.857 17.39 0.00 0.00 3.24
2135 2433 4.938575 TTAAAAACCCCAGCTGATCCTA 57.061 40.909 17.39 0.00 0.00 2.94
2136 2434 2.808906 AAAACCCCAGCTGATCCTAC 57.191 50.000 17.39 0.00 0.00 3.18
2137 2435 0.541863 AAACCCCAGCTGATCCTACG 59.458 55.000 17.39 0.00 0.00 3.51
2138 2436 0.325296 AACCCCAGCTGATCCTACGA 60.325 55.000 17.39 0.00 0.00 3.43
2139 2437 0.105453 ACCCCAGCTGATCCTACGAT 60.105 55.000 17.39 0.00 0.00 3.73
2140 2438 0.319728 CCCCAGCTGATCCTACGATG 59.680 60.000 17.39 0.00 0.00 3.84
2141 2439 1.043816 CCCAGCTGATCCTACGATGT 58.956 55.000 17.39 0.00 0.00 3.06
2142 2440 2.239400 CCCAGCTGATCCTACGATGTA 58.761 52.381 17.39 0.00 0.00 2.29
2143 2441 2.029828 CCCAGCTGATCCTACGATGTAC 60.030 54.545 17.39 0.00 0.00 2.90
2144 2442 2.029828 CCAGCTGATCCTACGATGTACC 60.030 54.545 17.39 0.00 0.00 3.34
2145 2443 2.887783 CAGCTGATCCTACGATGTACCT 59.112 50.000 8.42 0.00 0.00 3.08
2146 2444 2.887783 AGCTGATCCTACGATGTACCTG 59.112 50.000 0.00 0.00 0.00 4.00
2147 2445 2.885266 GCTGATCCTACGATGTACCTGA 59.115 50.000 0.00 0.00 0.00 3.86
2148 2446 3.304794 GCTGATCCTACGATGTACCTGAC 60.305 52.174 0.00 0.00 0.00 3.51
2149 2447 4.138290 CTGATCCTACGATGTACCTGACT 58.862 47.826 0.00 0.00 0.00 3.41
2150 2448 4.533815 TGATCCTACGATGTACCTGACTT 58.466 43.478 0.00 0.00 0.00 3.01
2151 2449 4.338400 TGATCCTACGATGTACCTGACTTG 59.662 45.833 0.00 0.00 0.00 3.16
2152 2450 3.693807 TCCTACGATGTACCTGACTTGT 58.306 45.455 0.00 0.00 0.00 3.16
2153 2451 3.693085 TCCTACGATGTACCTGACTTGTC 59.307 47.826 0.00 0.00 0.00 3.18
2154 2452 2.631418 ACGATGTACCTGACTTGTCG 57.369 50.000 0.00 0.00 35.60 4.35
2155 2453 1.884579 ACGATGTACCTGACTTGTCGT 59.115 47.619 0.00 0.00 36.90 4.34
2156 2454 2.095364 ACGATGTACCTGACTTGTCGTC 60.095 50.000 0.00 0.00 43.14 4.20
2157 2455 2.161808 CGATGTACCTGACTTGTCGTCT 59.838 50.000 0.00 0.00 43.25 4.18
2158 2456 3.502920 GATGTACCTGACTTGTCGTCTG 58.497 50.000 0.00 0.00 43.25 3.51
2159 2457 2.304092 TGTACCTGACTTGTCGTCTGT 58.696 47.619 0.00 0.00 43.25 3.41
2160 2458 2.034179 TGTACCTGACTTGTCGTCTGTG 59.966 50.000 0.00 0.00 43.25 3.66
2161 2459 0.389391 ACCTGACTTGTCGTCTGTGG 59.611 55.000 0.00 0.00 43.25 4.17
2162 2460 0.673985 CCTGACTTGTCGTCTGTGGA 59.326 55.000 0.00 0.00 43.25 4.02
2163 2461 1.273606 CCTGACTTGTCGTCTGTGGAT 59.726 52.381 0.00 0.00 43.25 3.41
2164 2462 2.600731 CTGACTTGTCGTCTGTGGATC 58.399 52.381 0.00 0.00 43.25 3.36
2165 2463 1.068541 TGACTTGTCGTCTGTGGATCG 60.069 52.381 0.00 0.00 43.25 3.69
2166 2464 0.959553 ACTTGTCGTCTGTGGATCGT 59.040 50.000 0.00 0.00 0.00 3.73
2167 2465 1.335964 ACTTGTCGTCTGTGGATCGTG 60.336 52.381 0.00 0.00 0.00 4.35
2168 2466 0.666274 TTGTCGTCTGTGGATCGTGC 60.666 55.000 0.00 0.00 0.00 5.34
2169 2467 2.152699 GTCGTCTGTGGATCGTGCG 61.153 63.158 0.00 0.00 0.00 5.34
2170 2468 2.126463 CGTCTGTGGATCGTGCGT 60.126 61.111 0.00 0.00 0.00 5.24
2171 2469 2.152699 CGTCTGTGGATCGTGCGTC 61.153 63.158 0.00 0.00 0.00 5.19
2172 2470 1.805945 GTCTGTGGATCGTGCGTCC 60.806 63.158 6.36 6.36 36.26 4.79
2173 2471 2.261361 CTGTGGATCGTGCGTCCA 59.739 61.111 10.28 10.28 43.26 4.02
2174 2472 1.153568 CTGTGGATCGTGCGTCCAT 60.154 57.895 15.02 0.00 46.68 3.41
2175 2473 0.102300 CTGTGGATCGTGCGTCCATA 59.898 55.000 15.02 12.54 46.68 2.74
2176 2474 0.179121 TGTGGATCGTGCGTCCATAC 60.179 55.000 15.02 7.52 46.68 2.39
2185 2483 4.853507 CGTCCATACGTCGTGTGT 57.146 55.556 19.03 0.00 44.21 3.72
2186 2484 3.973923 CGTCCATACGTCGTGTGTA 57.026 52.632 19.03 2.31 44.21 2.90
2187 2485 2.463553 CGTCCATACGTCGTGTGTAT 57.536 50.000 19.03 0.00 44.21 2.29
2188 2486 3.590720 CGTCCATACGTCGTGTGTATA 57.409 47.619 19.03 3.67 44.21 1.47
2189 2487 3.538780 CGTCCATACGTCGTGTGTATAG 58.461 50.000 19.03 5.72 44.21 1.31
2190 2488 3.294943 GTCCATACGTCGTGTGTATAGC 58.705 50.000 19.03 3.05 31.52 2.97
2191 2489 2.944349 TCCATACGTCGTGTGTATAGCA 59.056 45.455 19.03 0.00 31.52 3.49
2192 2490 3.002965 TCCATACGTCGTGTGTATAGCAG 59.997 47.826 19.03 4.11 31.52 4.24
2193 2491 3.242969 CCATACGTCGTGTGTATAGCAGT 60.243 47.826 19.03 0.00 31.52 4.40
2194 2492 2.257974 ACGTCGTGTGTATAGCAGTG 57.742 50.000 0.00 0.00 0.00 3.66
2195 2493 0.914551 CGTCGTGTGTATAGCAGTGC 59.085 55.000 7.13 7.13 0.00 4.40
2196 2494 1.467543 CGTCGTGTGTATAGCAGTGCT 60.468 52.381 23.44 23.44 43.41 4.40
2197 2495 2.186076 GTCGTGTGTATAGCAGTGCTC 58.814 52.381 23.64 8.26 40.44 4.26
2278 2576 3.650942 TGGGTAGTCCACAAAGACAAGAT 59.349 43.478 0.00 0.00 41.46 2.40
2283 2581 7.159372 GGTAGTCCACAAAGACAAGATTAAGA 58.841 38.462 0.00 0.00 39.34 2.10
2286 2584 6.205658 AGTCCACAAAGACAAGATTAAGAAGC 59.794 38.462 0.00 0.00 39.34 3.86
2325 2623 9.391006 TGGAACAAACAATTATGATACTCCTAC 57.609 33.333 0.00 0.00 31.92 3.18
2582 2885 9.107177 AGCAATTTATCTAGTGATTGAGTTCTG 57.893 33.333 11.48 0.00 34.32 3.02
2592 2895 9.814899 CTAGTGATTGAGTTCTGAAATAGACAT 57.185 33.333 0.00 0.00 34.43 3.06
2641 2944 1.853963 TTGAGACAGAGGGAGTAGCC 58.146 55.000 0.00 0.00 0.00 3.93
2642 2945 1.003646 TGAGACAGAGGGAGTAGCCT 58.996 55.000 0.00 0.00 36.66 4.58
2725 3028 7.147949 CCTTTGAAATCTCCATGATGTTAGCTT 60.148 37.037 0.00 0.00 35.21 3.74
2816 3119 9.569122 AACAATGTACCACTGTTTAGATAAACT 57.431 29.630 14.67 0.00 44.36 2.66
2818 3121 9.214957 CAATGTACCACTGTTTAGATAAACTGA 57.785 33.333 21.78 5.83 44.36 3.41
2940 3244 5.208121 TGTTTCCTGGAGAACCTTTGAAAT 58.792 37.500 14.77 0.00 32.95 2.17
2944 3248 5.644188 TCCTGGAGAACCTTTGAAATCAAT 58.356 37.500 0.00 0.00 35.55 2.57
2979 3283 6.346096 TGTATAATTTGTAGGACCAGACAGC 58.654 40.000 0.00 0.00 0.00 4.40
3059 3363 5.855740 AAAAAGAATAAAACCACGTGGGA 57.144 34.783 36.47 19.75 41.15 4.37
3206 3510 1.066908 CGCCCTGTTGTCATTTGTGTT 59.933 47.619 0.00 0.00 0.00 3.32
3292 3596 0.812549 TGCTGTCGCCTTGTATACGA 59.187 50.000 0.00 0.00 34.43 3.43
3361 3666 8.621532 ATGATGTTGTACAATGTAAGTCTGTT 57.378 30.769 12.26 0.00 0.00 3.16
3384 3689 5.290493 ACAACCACATACAGAGAACTTGA 57.710 39.130 0.00 0.00 0.00 3.02
3521 3826 5.388654 GAATCCATTGTCAGGATACCCAAT 58.611 41.667 0.00 0.00 44.94 3.16
3522 3827 4.879295 TCCATTGTCAGGATACCCAATT 57.121 40.909 0.00 0.00 30.25 2.32
3635 3940 4.579869 TGAAGTCACTAATTCCTGCCTTC 58.420 43.478 0.00 0.00 0.00 3.46
3677 3982 3.922171 AAATGTTTGGGCCAACAGAAA 57.078 38.095 20.79 0.00 0.00 2.52
3880 4212 1.927487 TACTTGCAGTTCTCCCGGTA 58.073 50.000 0.00 0.00 0.00 4.02
3979 4311 3.630289 GTACCTGATGGGGACGCT 58.370 61.111 0.00 0.00 39.45 5.07
4002 4334 1.066143 CAATGGCTCTTCCTACACCGT 60.066 52.381 0.00 0.00 35.26 4.83
4105 4437 2.358737 CGGAAGGTCCTTGCGCTT 60.359 61.111 29.23 0.00 46.58 4.68
4112 4444 1.598130 GTCCTTGCGCTTGACACCT 60.598 57.895 9.73 0.00 0.00 4.00
4168 4501 0.517316 GTCCACCGTTGCATCAAGTC 59.483 55.000 0.00 0.00 0.00 3.01
4189 4522 2.361865 AGACTCTTCTCGCCGGCT 60.362 61.111 26.68 1.56 0.00 5.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 55 5.984695 ACACACATGATGACTACTACTGT 57.015 39.130 0.00 0.00 0.00 3.55
55 56 6.625362 AGAACACACATGATGACTACTACTG 58.375 40.000 0.00 0.00 0.00 2.74
110 111 3.996825 GGCACCAAATAGCACGAAG 57.003 52.632 0.00 0.00 0.00 3.79
146 148 2.177734 TGGCTGCAAGAAATTGGCATA 58.822 42.857 0.50 0.00 36.87 3.14
162 164 3.385755 GTGATCCCATTGCTATTTTGGCT 59.614 43.478 0.00 0.00 0.00 4.75
179 193 8.414778 ACACCTTAATTGCTAGTACTAGTGATC 58.585 37.037 26.76 13.42 35.65 2.92
189 203 9.899661 TGTTATTATCACACCTTAATTGCTAGT 57.100 29.630 0.00 0.00 0.00 2.57
251 265 5.509163 GGCTCGTGCTGAATAATTCCTAGTA 60.509 44.000 9.61 0.00 39.59 1.82
253 267 3.743396 GGCTCGTGCTGAATAATTCCTAG 59.257 47.826 9.61 0.00 39.59 3.02
254 268 3.728845 GGCTCGTGCTGAATAATTCCTA 58.271 45.455 9.61 0.00 39.59 2.94
255 269 2.565841 GGCTCGTGCTGAATAATTCCT 58.434 47.619 9.61 0.00 39.59 3.36
315 340 0.741915 GTCGGAGGAGAACTAGCCAG 59.258 60.000 0.00 0.00 0.00 4.85
317 342 1.026584 GAGTCGGAGGAGAACTAGCC 58.973 60.000 0.00 0.00 0.00 3.93
454 565 2.803479 CGTCCCAGGTACTACCGC 59.197 66.667 0.00 0.00 44.90 5.68
458 569 1.610554 GCCAAGCGTCCCAGGTACTA 61.611 60.000 0.00 0.00 36.02 1.82
460 571 2.436115 GCCAAGCGTCCCAGGTAC 60.436 66.667 0.00 0.00 0.00 3.34
461 572 3.712907 GGCCAAGCGTCCCAGGTA 61.713 66.667 0.00 0.00 0.00 3.08
473 584 4.717629 CGACGACGAGCTGGCCAA 62.718 66.667 7.01 0.00 42.66 4.52
546 657 1.751924 AGATGGTGAAGACGAGGCTAC 59.248 52.381 0.00 0.00 0.00 3.58
552 663 3.165875 AGGAAGAAGATGGTGAAGACGA 58.834 45.455 0.00 0.00 0.00 4.20
559 670 6.072230 GGAAGAAGAAAAGGAAGAAGATGGTG 60.072 42.308 0.00 0.00 0.00 4.17
564 675 4.505039 CCGGGAAGAAGAAAAGGAAGAAGA 60.505 45.833 0.00 0.00 0.00 2.87
572 683 1.454201 GGAGCCGGGAAGAAGAAAAG 58.546 55.000 2.18 0.00 0.00 2.27
574 685 1.295423 CGGAGCCGGGAAGAAGAAA 59.705 57.895 2.18 0.00 35.56 2.52
575 686 2.978824 CGGAGCCGGGAAGAAGAA 59.021 61.111 2.18 0.00 35.56 2.52
609 720 2.966309 CTTTCACCGGGCACGAAGC 61.966 63.158 11.66 0.00 44.60 3.86
824 999 2.432628 CAAGACAGCGACGGGTCC 60.433 66.667 0.00 0.00 34.58 4.46
825 1000 0.878961 AAACAAGACAGCGACGGGTC 60.879 55.000 0.00 0.00 0.00 4.46
858 1033 1.264672 GAGACGAGAGCGAAAGAAGC 58.735 55.000 0.00 0.00 41.64 3.86
913 1089 2.202892 GGCGACGGGGAAGATGAC 60.203 66.667 0.00 0.00 0.00 3.06
958 1138 1.153289 CAGATGAGTCCAAGCGGGG 60.153 63.158 0.00 0.00 37.22 5.73
959 1139 0.460987 GTCAGATGAGTCCAAGCGGG 60.461 60.000 0.00 0.00 38.37 6.13
985 1171 0.251077 GCCATGGGATTAGGAGCAGG 60.251 60.000 15.13 0.00 0.00 4.85
993 1179 3.484806 ACCGCCGCCATGGGATTA 61.485 61.111 15.13 0.00 38.63 1.75
1524 1716 2.431771 CCGAACATGGCGACGTCA 60.432 61.111 17.16 3.85 0.00 4.35
1560 1752 1.960040 TTCGGCAGATGAGACGCCAT 61.960 55.000 0.00 0.00 46.60 4.40
1566 1758 1.137675 CTCACCATTCGGCAGATGAGA 59.862 52.381 8.89 2.18 36.50 3.27
1584 1776 9.612620 CCAAGTAATTGTCAAATTCTGTTACTC 57.387 33.333 1.80 0.00 37.23 2.59
1589 1781 6.074648 TCCCCAAGTAATTGTCAAATTCTGT 58.925 36.000 1.80 0.00 37.23 3.41
1592 1784 6.590234 ACTCCCCAAGTAATTGTCAAATTC 57.410 37.500 1.80 0.00 37.23 2.17
1593 1785 6.994421 AACTCCCCAAGTAATTGTCAAATT 57.006 33.333 1.80 0.00 37.17 1.82
1595 1787 6.366340 TGTAACTCCCCAAGTAATTGTCAAA 58.634 36.000 1.80 0.00 37.17 2.69
1596 1788 5.942961 TGTAACTCCCCAAGTAATTGTCAA 58.057 37.500 1.80 0.00 37.17 3.18
1599 1791 5.836024 TCTGTAACTCCCCAAGTAATTGT 57.164 39.130 1.80 0.00 37.17 2.71
1600 1792 5.823045 GGATCTGTAACTCCCCAAGTAATTG 59.177 44.000 0.00 0.00 37.17 2.32
1601 1793 5.104067 GGGATCTGTAACTCCCCAAGTAATT 60.104 44.000 0.00 0.00 44.68 1.40
1603 1795 3.778629 GGGATCTGTAACTCCCCAAGTAA 59.221 47.826 0.00 0.00 44.68 2.24
1604 1796 3.381335 GGGATCTGTAACTCCCCAAGTA 58.619 50.000 0.00 0.00 44.68 2.24
1612 1804 4.525100 GTCCATCTAGGGGATCTGTAACTC 59.475 50.000 7.24 0.00 36.67 3.01
1613 1805 4.078571 TGTCCATCTAGGGGATCTGTAACT 60.079 45.833 7.24 0.00 36.67 2.24
1614 1806 4.223953 TGTCCATCTAGGGGATCTGTAAC 58.776 47.826 7.24 0.00 36.67 2.50
1615 1807 4.078571 ACTGTCCATCTAGGGGATCTGTAA 60.079 45.833 7.24 0.00 36.67 2.41
1617 1809 2.248686 ACTGTCCATCTAGGGGATCTGT 59.751 50.000 7.24 8.19 36.67 3.41
1618 1810 2.969628 ACTGTCCATCTAGGGGATCTG 58.030 52.381 7.24 7.74 36.67 2.90
1619 1811 3.715648 AACTGTCCATCTAGGGGATCT 57.284 47.619 7.24 0.00 36.67 2.75
1620 1812 4.164221 TCAAAACTGTCCATCTAGGGGATC 59.836 45.833 7.24 0.00 36.67 3.36
1622 1814 3.526899 TCAAAACTGTCCATCTAGGGGA 58.473 45.455 0.46 0.46 38.24 4.81
1623 1815 4.510167 ATCAAAACTGTCCATCTAGGGG 57.490 45.455 0.00 0.00 38.24 4.79
1625 1817 6.540189 CAGGTTATCAAAACTGTCCATCTAGG 59.460 42.308 0.00 0.00 44.11 3.02
1626 1818 7.545362 CAGGTTATCAAAACTGTCCATCTAG 57.455 40.000 0.00 0.00 44.11 2.43
1652 1918 4.832248 CACTGCCCAGAAGAATGTACTTA 58.168 43.478 1.69 0.00 0.00 2.24
1653 1919 3.679389 CACTGCCCAGAAGAATGTACTT 58.321 45.455 1.69 0.00 0.00 2.24
1654 1920 2.616510 GCACTGCCCAGAAGAATGTACT 60.617 50.000 1.69 0.00 0.00 2.73
1655 1921 1.740025 GCACTGCCCAGAAGAATGTAC 59.260 52.381 1.69 0.00 0.00 2.90
1656 1922 1.350684 TGCACTGCCCAGAAGAATGTA 59.649 47.619 1.69 0.00 0.00 2.29
1665 1931 1.820519 ACATTTGTATGCACTGCCCAG 59.179 47.619 0.00 0.00 35.03 4.45
1687 1966 1.202475 GGCAAAACTGCTCCCGAAAAA 60.202 47.619 0.00 0.00 34.73 1.94
1688 1967 0.387565 GGCAAAACTGCTCCCGAAAA 59.612 50.000 0.00 0.00 34.73 2.29
1689 1968 0.467290 AGGCAAAACTGCTCCCGAAA 60.467 50.000 0.00 0.00 34.73 3.46
1692 1971 2.335712 GGAGGCAAAACTGCTCCCG 61.336 63.158 0.00 0.00 34.73 5.14
1718 1997 2.036475 GACATGGTATCCGTCAGAGCAT 59.964 50.000 0.00 0.00 0.00 3.79
1719 1998 1.409064 GACATGGTATCCGTCAGAGCA 59.591 52.381 0.00 0.00 0.00 4.26
1720 1999 1.683917 AGACATGGTATCCGTCAGAGC 59.316 52.381 0.00 0.00 31.92 4.09
1721 2000 2.544694 GCAGACATGGTATCCGTCAGAG 60.545 54.545 0.00 0.00 31.92 3.35
1722 2001 1.409064 GCAGACATGGTATCCGTCAGA 59.591 52.381 0.00 0.00 31.92 3.27
1723 2002 1.410517 AGCAGACATGGTATCCGTCAG 59.589 52.381 0.00 0.00 34.74 3.51
1725 2004 2.101582 AGAAGCAGACATGGTATCCGTC 59.898 50.000 0.00 0.00 35.69 4.79
1726 2005 2.111384 AGAAGCAGACATGGTATCCGT 58.889 47.619 0.00 0.00 35.69 4.69
1727 2006 2.159043 ACAGAAGCAGACATGGTATCCG 60.159 50.000 0.00 0.00 35.69 4.18
1728 2007 3.550437 ACAGAAGCAGACATGGTATCC 57.450 47.619 0.00 0.00 35.69 2.59
1729 2008 5.412594 TCAAAACAGAAGCAGACATGGTATC 59.587 40.000 0.00 0.00 35.69 2.24
1730 2009 5.316167 TCAAAACAGAAGCAGACATGGTAT 58.684 37.500 0.00 0.00 35.69 2.73
1731 2010 4.713553 TCAAAACAGAAGCAGACATGGTA 58.286 39.130 0.00 0.00 35.69 3.25
1732 2011 3.554934 TCAAAACAGAAGCAGACATGGT 58.445 40.909 0.00 0.00 39.32 3.55
1733 2012 4.482386 CATCAAAACAGAAGCAGACATGG 58.518 43.478 0.00 0.00 0.00 3.66
1734 2013 3.918591 GCATCAAAACAGAAGCAGACATG 59.081 43.478 0.00 0.00 32.81 3.21
1735 2014 3.825014 AGCATCAAAACAGAAGCAGACAT 59.175 39.130 0.00 0.00 34.86 3.06
1736 2015 3.216800 AGCATCAAAACAGAAGCAGACA 58.783 40.909 0.00 0.00 34.86 3.41
1742 2021 2.669391 GCCCGAAGCATCAAAACAGAAG 60.669 50.000 0.00 0.00 42.97 2.85
1751 2030 4.161295 CGAGGGCCCGAAGCATCA 62.161 66.667 18.44 0.00 46.50 3.07
1760 2039 2.651382 ATTAATGTAACCGAGGGCCC 57.349 50.000 16.46 16.46 0.00 5.80
1761 2040 3.564225 CAGAATTAATGTAACCGAGGGCC 59.436 47.826 0.00 0.00 0.00 5.80
1765 2044 7.491372 TGAGCTAACAGAATTAATGTAACCGAG 59.509 37.037 0.00 0.00 0.00 4.63
1768 2047 8.718102 TCTGAGCTAACAGAATTAATGTAACC 57.282 34.615 2.73 0.00 42.79 2.85
1782 2072 6.147821 GCAACTGAAAATACTCTGAGCTAACA 59.852 38.462 4.19 0.00 0.00 2.41
1783 2073 6.370166 AGCAACTGAAAATACTCTGAGCTAAC 59.630 38.462 4.19 0.00 32.31 2.34
1785 2075 6.042638 AGCAACTGAAAATACTCTGAGCTA 57.957 37.500 4.19 0.00 32.31 3.32
1797 2087 6.112734 TCTCTGTAACTGAAGCAACTGAAAA 58.887 36.000 0.00 0.00 0.00 2.29
1803 2093 5.814705 AGCATATCTCTGTAACTGAAGCAAC 59.185 40.000 0.00 0.00 0.00 4.17
1817 2107 5.434408 TGAAAACAGCATGAGCATATCTCT 58.566 37.500 0.00 0.00 45.49 3.10
1959 2257 1.933181 TGTCAGTTTGTGCAGAAGACG 59.067 47.619 9.09 0.00 0.00 4.18
2053 2351 0.033920 AGTCAATCGTGTGCAGAGCA 59.966 50.000 0.00 0.00 35.60 4.26
2054 2352 0.441533 CAGTCAATCGTGTGCAGAGC 59.558 55.000 0.00 0.00 0.00 4.09
2055 2353 0.441533 GCAGTCAATCGTGTGCAGAG 59.558 55.000 0.00 0.00 35.91 3.35
2056 2354 0.033920 AGCAGTCAATCGTGTGCAGA 59.966 50.000 0.00 0.00 38.44 4.26
2057 2355 0.165295 CAGCAGTCAATCGTGTGCAG 59.835 55.000 0.00 0.00 38.44 4.41
2058 2356 1.229975 CCAGCAGTCAATCGTGTGCA 61.230 55.000 0.00 0.00 38.44 4.57
2059 2357 0.950555 TCCAGCAGTCAATCGTGTGC 60.951 55.000 0.00 0.00 36.10 4.57
2060 2358 0.792640 GTCCAGCAGTCAATCGTGTG 59.207 55.000 0.00 0.00 0.00 3.82
2061 2359 0.667487 CGTCCAGCAGTCAATCGTGT 60.667 55.000 0.00 0.00 0.00 4.49
2062 2360 0.388520 TCGTCCAGCAGTCAATCGTG 60.389 55.000 0.00 0.00 0.00 4.35
2063 2361 0.532573 ATCGTCCAGCAGTCAATCGT 59.467 50.000 0.00 0.00 0.00 3.73
2064 2362 1.645034 AATCGTCCAGCAGTCAATCG 58.355 50.000 0.00 0.00 0.00 3.34
2065 2363 2.744202 ACAAATCGTCCAGCAGTCAATC 59.256 45.455 0.00 0.00 0.00 2.67
2066 2364 2.485426 CACAAATCGTCCAGCAGTCAAT 59.515 45.455 0.00 0.00 0.00 2.57
2067 2365 1.872952 CACAAATCGTCCAGCAGTCAA 59.127 47.619 0.00 0.00 0.00 3.18
2068 2366 1.511850 CACAAATCGTCCAGCAGTCA 58.488 50.000 0.00 0.00 0.00 3.41
2069 2367 0.166814 GCACAAATCGTCCAGCAGTC 59.833 55.000 0.00 0.00 0.00 3.51
2070 2368 1.237285 GGCACAAATCGTCCAGCAGT 61.237 55.000 0.00 0.00 0.00 4.40
2071 2369 0.957395 AGGCACAAATCGTCCAGCAG 60.957 55.000 0.00 0.00 0.00 4.24
2072 2370 1.073025 AGGCACAAATCGTCCAGCA 59.927 52.632 0.00 0.00 0.00 4.41
2073 2371 0.955428 TCAGGCACAAATCGTCCAGC 60.955 55.000 0.00 0.00 0.00 4.85
2074 2372 0.798776 GTCAGGCACAAATCGTCCAG 59.201 55.000 0.00 0.00 0.00 3.86
2075 2373 0.948623 CGTCAGGCACAAATCGTCCA 60.949 55.000 0.00 0.00 0.00 4.02
2076 2374 1.635663 CCGTCAGGCACAAATCGTCC 61.636 60.000 0.00 0.00 0.00 4.79
2077 2375 1.635663 CCCGTCAGGCACAAATCGTC 61.636 60.000 0.00 0.00 35.76 4.20
2078 2376 1.671054 CCCGTCAGGCACAAATCGT 60.671 57.895 0.00 0.00 35.76 3.73
2079 2377 1.361668 CTCCCGTCAGGCACAAATCG 61.362 60.000 0.00 0.00 35.76 3.34
2080 2378 1.648467 GCTCCCGTCAGGCACAAATC 61.648 60.000 0.00 0.00 35.76 2.17
2081 2379 1.675641 GCTCCCGTCAGGCACAAAT 60.676 57.895 0.00 0.00 35.76 2.32
2082 2380 2.281484 GCTCCCGTCAGGCACAAA 60.281 61.111 0.00 0.00 35.76 2.83
2083 2381 3.535629 CTGCTCCCGTCAGGCACAA 62.536 63.158 0.00 0.00 35.76 3.33
2084 2382 4.007644 CTGCTCCCGTCAGGCACA 62.008 66.667 0.00 0.00 35.76 4.57
2085 2383 4.767255 CCTGCTCCCGTCAGGCAC 62.767 72.222 0.00 0.00 43.88 5.01
2089 2387 4.154347 GGCTCCTGCTCCCGTCAG 62.154 72.222 0.00 0.00 39.59 3.51
2091 2389 4.459089 GTGGCTCCTGCTCCCGTC 62.459 72.222 0.00 0.00 39.59 4.79
2093 2391 4.767255 GTGTGGCTCCTGCTCCCG 62.767 72.222 0.00 0.00 39.59 5.14
2094 2392 3.618780 CTGTGTGGCTCCTGCTCCC 62.619 68.421 0.00 0.00 39.59 4.30
2095 2393 1.908340 ATCTGTGTGGCTCCTGCTCC 61.908 60.000 0.00 0.00 39.59 4.70
2096 2394 0.035630 AATCTGTGTGGCTCCTGCTC 60.036 55.000 0.00 0.00 39.59 4.26
2097 2395 1.279496 TAATCTGTGTGGCTCCTGCT 58.721 50.000 0.00 0.00 39.59 4.24
2098 2396 2.113860 TTAATCTGTGTGGCTCCTGC 57.886 50.000 0.00 0.00 38.76 4.85
2099 2397 4.321230 GGTTTTTAATCTGTGTGGCTCCTG 60.321 45.833 0.00 0.00 0.00 3.86
2100 2398 3.826729 GGTTTTTAATCTGTGTGGCTCCT 59.173 43.478 0.00 0.00 0.00 3.69
2101 2399 3.056821 GGGTTTTTAATCTGTGTGGCTCC 60.057 47.826 0.00 0.00 0.00 4.70
2102 2400 3.056821 GGGGTTTTTAATCTGTGTGGCTC 60.057 47.826 0.00 0.00 0.00 4.70
2103 2401 2.897326 GGGGTTTTTAATCTGTGTGGCT 59.103 45.455 0.00 0.00 0.00 4.75
2104 2402 2.630580 TGGGGTTTTTAATCTGTGTGGC 59.369 45.455 0.00 0.00 0.00 5.01
2105 2403 3.306019 GCTGGGGTTTTTAATCTGTGTGG 60.306 47.826 0.00 0.00 0.00 4.17
2106 2404 3.573967 AGCTGGGGTTTTTAATCTGTGTG 59.426 43.478 0.00 0.00 0.00 3.82
2107 2405 3.573967 CAGCTGGGGTTTTTAATCTGTGT 59.426 43.478 5.57 0.00 0.00 3.72
2108 2406 3.826157 TCAGCTGGGGTTTTTAATCTGTG 59.174 43.478 15.13 0.00 0.00 3.66
2109 2407 4.112634 TCAGCTGGGGTTTTTAATCTGT 57.887 40.909 15.13 0.00 0.00 3.41
2110 2408 4.098501 GGATCAGCTGGGGTTTTTAATCTG 59.901 45.833 15.13 0.00 0.00 2.90
2111 2409 4.017130 AGGATCAGCTGGGGTTTTTAATCT 60.017 41.667 15.13 0.00 0.00 2.40
2112 2410 4.281657 AGGATCAGCTGGGGTTTTTAATC 58.718 43.478 15.13 5.81 0.00 1.75
2113 2411 4.337264 AGGATCAGCTGGGGTTTTTAAT 57.663 40.909 15.13 0.00 0.00 1.40
2114 2412 3.825908 AGGATCAGCTGGGGTTTTTAA 57.174 42.857 15.13 0.00 0.00 1.52
2115 2413 3.370103 CGTAGGATCAGCTGGGGTTTTTA 60.370 47.826 15.13 0.00 0.00 1.52
2116 2414 2.618045 CGTAGGATCAGCTGGGGTTTTT 60.618 50.000 15.13 0.00 0.00 1.94
2117 2415 1.065418 CGTAGGATCAGCTGGGGTTTT 60.065 52.381 15.13 0.00 0.00 2.43
2118 2416 0.541863 CGTAGGATCAGCTGGGGTTT 59.458 55.000 15.13 0.00 0.00 3.27
2119 2417 0.325296 TCGTAGGATCAGCTGGGGTT 60.325 55.000 15.13 0.33 0.00 4.11
2120 2418 0.105453 ATCGTAGGATCAGCTGGGGT 60.105 55.000 15.13 0.00 0.00 4.95
2121 2419 0.319728 CATCGTAGGATCAGCTGGGG 59.680 60.000 15.13 0.00 0.00 4.96
2122 2420 1.043816 ACATCGTAGGATCAGCTGGG 58.956 55.000 15.13 0.00 0.00 4.45
2123 2421 2.029828 GGTACATCGTAGGATCAGCTGG 60.030 54.545 15.13 0.00 0.00 4.85
2124 2422 2.887783 AGGTACATCGTAGGATCAGCTG 59.112 50.000 7.63 7.63 0.00 4.24
2125 2423 2.887783 CAGGTACATCGTAGGATCAGCT 59.112 50.000 0.00 0.00 0.00 4.24
2126 2424 2.885266 TCAGGTACATCGTAGGATCAGC 59.115 50.000 0.00 0.00 0.00 4.26
2127 2425 4.138290 AGTCAGGTACATCGTAGGATCAG 58.862 47.826 0.00 0.00 0.00 2.90
2128 2426 4.166246 AGTCAGGTACATCGTAGGATCA 57.834 45.455 0.00 0.00 0.00 2.92
2129 2427 4.338682 ACAAGTCAGGTACATCGTAGGATC 59.661 45.833 0.00 0.00 0.00 3.36
2130 2428 4.279145 ACAAGTCAGGTACATCGTAGGAT 58.721 43.478 0.00 0.00 0.00 3.24
2131 2429 3.693085 GACAAGTCAGGTACATCGTAGGA 59.307 47.826 0.00 0.00 0.00 2.94
2132 2430 3.487042 CGACAAGTCAGGTACATCGTAGG 60.487 52.174 0.00 0.00 0.00 3.18
2133 2431 3.126514 ACGACAAGTCAGGTACATCGTAG 59.873 47.826 0.00 0.00 39.89 3.51
2134 2432 3.076621 ACGACAAGTCAGGTACATCGTA 58.923 45.455 0.00 0.00 39.89 3.43
2135 2433 1.884579 ACGACAAGTCAGGTACATCGT 59.115 47.619 0.00 0.00 38.11 3.73
2136 2434 2.631418 ACGACAAGTCAGGTACATCG 57.369 50.000 0.00 0.00 36.70 3.84
2147 2445 0.959553 ACGATCCACAGACGACAAGT 59.040 50.000 0.00 0.00 0.00 3.16
2148 2446 1.340658 CACGATCCACAGACGACAAG 58.659 55.000 0.00 0.00 0.00 3.16
2149 2447 0.666274 GCACGATCCACAGACGACAA 60.666 55.000 0.00 0.00 0.00 3.18
2150 2448 1.080772 GCACGATCCACAGACGACA 60.081 57.895 0.00 0.00 0.00 4.35
2151 2449 2.152699 CGCACGATCCACAGACGAC 61.153 63.158 0.00 0.00 0.00 4.34
2152 2450 2.178273 CGCACGATCCACAGACGA 59.822 61.111 0.00 0.00 0.00 4.20
2153 2451 2.126463 ACGCACGATCCACAGACG 60.126 61.111 0.00 0.00 0.00 4.18
2154 2452 1.805945 GGACGCACGATCCACAGAC 60.806 63.158 0.00 0.00 36.15 3.51
2155 2453 2.272447 TGGACGCACGATCCACAGA 61.272 57.895 9.34 0.00 41.47 3.41
2156 2454 2.261361 TGGACGCACGATCCACAG 59.739 61.111 9.34 0.00 41.47 3.66
2160 2458 3.917870 CGTATGGACGCACGATCC 58.082 61.111 0.00 0.94 43.21 3.36
2169 2467 3.242837 TGCTATACACACGACGTATGGAC 60.243 47.826 11.47 0.00 31.45 4.02
2170 2468 2.944349 TGCTATACACACGACGTATGGA 59.056 45.455 11.47 1.49 31.45 3.41
2171 2469 3.242969 ACTGCTATACACACGACGTATGG 60.243 47.826 11.47 0.00 32.01 2.74
2172 2470 3.724257 CACTGCTATACACACGACGTATG 59.276 47.826 4.39 4.39 32.01 2.39
2173 2471 3.791122 GCACTGCTATACACACGACGTAT 60.791 47.826 0.00 0.00 34.08 3.06
2174 2472 2.476686 GCACTGCTATACACACGACGTA 60.477 50.000 0.00 0.00 0.00 3.57
2175 2473 1.731424 GCACTGCTATACACACGACGT 60.731 52.381 0.00 0.00 0.00 4.34
2176 2474 0.914551 GCACTGCTATACACACGACG 59.085 55.000 0.00 0.00 0.00 5.12
2177 2475 2.186076 GAGCACTGCTATACACACGAC 58.814 52.381 2.71 0.00 39.88 4.34
2178 2476 1.816224 TGAGCACTGCTATACACACGA 59.184 47.619 2.71 0.00 39.88 4.35
2179 2477 2.278026 TGAGCACTGCTATACACACG 57.722 50.000 2.71 0.00 39.88 4.49
2180 2478 5.551760 AAAATGAGCACTGCTATACACAC 57.448 39.130 2.71 0.00 39.88 3.82
2181 2479 7.680442 TTTAAAATGAGCACTGCTATACACA 57.320 32.000 2.71 0.00 39.88 3.72
2182 2480 9.573133 AAATTTAAAATGAGCACTGCTATACAC 57.427 29.630 2.71 0.00 39.88 2.90
2183 2481 9.787532 GAAATTTAAAATGAGCACTGCTATACA 57.212 29.630 2.71 0.00 39.88 2.29
2186 2484 8.742777 TGAGAAATTTAAAATGAGCACTGCTAT 58.257 29.630 2.71 0.00 39.88 2.97
2187 2485 8.023128 GTGAGAAATTTAAAATGAGCACTGCTA 58.977 33.333 2.71 0.00 39.88 3.49
2188 2486 6.865205 GTGAGAAATTTAAAATGAGCACTGCT 59.135 34.615 2.22 2.22 43.88 4.24
2189 2487 6.642131 TGTGAGAAATTTAAAATGAGCACTGC 59.358 34.615 12.14 0.00 0.00 4.40
2190 2488 8.578308 TTGTGAGAAATTTAAAATGAGCACTG 57.422 30.769 12.14 0.00 0.00 3.66
2191 2489 9.199982 CATTGTGAGAAATTTAAAATGAGCACT 57.800 29.630 12.14 0.00 0.00 4.40
2192 2490 7.953710 GCATTGTGAGAAATTTAAAATGAGCAC 59.046 33.333 6.54 0.00 0.00 4.40
2193 2491 7.118101 GGCATTGTGAGAAATTTAAAATGAGCA 59.882 33.333 6.54 0.00 0.00 4.26
2194 2492 7.332678 AGGCATTGTGAGAAATTTAAAATGAGC 59.667 33.333 6.54 0.00 0.00 4.26
2195 2493 8.767478 AGGCATTGTGAGAAATTTAAAATGAG 57.233 30.769 6.54 0.00 0.00 2.90
2262 2560 6.205658 AGCTTCTTAATCTTGTCTTTGTGGAC 59.794 38.462 0.00 0.00 36.81 4.02
2278 2576 6.888105 TCCATGACATGTATCAGCTTCTTAA 58.112 36.000 14.26 0.00 30.46 1.85
2283 2581 4.847198 TGTTCCATGACATGTATCAGCTT 58.153 39.130 14.26 0.00 30.46 3.74
2286 2584 6.499234 TGTTTGTTCCATGACATGTATCAG 57.501 37.500 14.26 0.00 30.46 2.90
2526 2829 9.003658 CAGAAAACACTAAGGACACTTGAATAT 57.996 33.333 0.00 0.00 37.53 1.28
2613 2916 5.165961 TCCCTCTGTCTCAAAATGTAAGG 57.834 43.478 0.00 0.00 0.00 2.69
2641 2944 7.155328 ACAGGAAAGTAAGTGAATCACAGTAG 58.845 38.462 16.38 0.00 36.74 2.57
2642 2945 7.062749 ACAGGAAAGTAAGTGAATCACAGTA 57.937 36.000 16.38 4.53 36.74 2.74
2776 3079 7.174253 GTGGTACATTGTTCCAGAAGAAATGTA 59.826 37.037 14.70 16.95 44.52 2.29
2816 3119 7.813148 TGTTTTCAAAATAACCAAAACTCGTCA 59.187 29.630 7.44 0.00 38.82 4.35
2818 3121 8.535690 TTGTTTTCAAAATAACCAAAACTCGT 57.464 26.923 7.44 0.00 38.82 4.18
2836 3140 7.035004 TGCTCAGTATGGCATTATTTGTTTTC 58.965 34.615 4.78 0.00 37.36 2.29
2969 3273 1.457346 CTGAATTGGGCTGTCTGGTC 58.543 55.000 0.00 0.00 0.00 4.02
3035 3339 7.014422 TGTCCCACGTGGTTTTATTCTTTTTAT 59.986 33.333 31.80 0.00 34.77 1.40
3051 3355 0.036952 AAGCTGAGATGTCCCACGTG 60.037 55.000 9.08 9.08 0.00 4.49
3053 3357 0.534412 AGAAGCTGAGATGTCCCACG 59.466 55.000 0.00 0.00 0.00 4.94
3114 3418 8.077991 CGTTGGCATCACAGATTTATTCAATAT 58.922 33.333 0.00 0.00 0.00 1.28
3123 3427 1.246649 TGCGTTGGCATCACAGATTT 58.753 45.000 0.00 0.00 46.21 2.17
3206 3510 1.664873 CTTTCCAAACCATGCGGCA 59.335 52.632 4.58 4.58 34.57 5.69
3292 3596 7.571919 ACAGATTGGTGATACTTCATGAGATT 58.428 34.615 0.00 0.00 33.56 2.40
3361 3666 6.413783 TCAAGTTCTCTGTATGTGGTTGTA 57.586 37.500 0.00 0.00 0.00 2.41
3521 3826 8.974060 ACACTTGAATACTGTTCTAAAGGAAA 57.026 30.769 0.00 0.00 35.51 3.13
3522 3827 8.836413 CAACACTTGAATACTGTTCTAAAGGAA 58.164 33.333 0.00 0.00 0.00 3.36
3635 3940 9.956720 CATTTAATAGTTCTTTGGAATAGCAGG 57.043 33.333 0.00 0.00 33.71 4.85
3908 4240 3.367743 CACATTGGCTGGCTGCGT 61.368 61.111 10.35 0.00 44.05 5.24
3979 4311 0.991146 TGTAGGAAGAGCCATTGCCA 59.009 50.000 0.00 0.00 40.02 4.92
4028 4360 2.517450 GCACATAGTCAGACGGCGC 61.517 63.158 6.90 0.00 0.00 6.53
4036 4368 0.036483 ACACGCCATGCACATAGTCA 60.036 50.000 0.00 0.00 0.00 3.41
4105 4437 4.314440 GTGCTGGCGGAGGTGTCA 62.314 66.667 0.00 0.00 0.00 3.58
4112 4444 4.758251 CCATGACGTGCTGGCGGA 62.758 66.667 0.00 0.00 35.98 5.54
4157 4490 2.543578 GTCTGCCGACTTGATGCAA 58.456 52.632 0.37 0.00 37.19 4.08
4168 4501 2.202676 GGCGAGAAGAGTCTGCCG 60.203 66.667 3.65 4.38 37.90 5.69
4217 4550 2.401766 CGCAGACAGGGTCATTGCC 61.402 63.158 0.00 0.00 32.49 4.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.