Multiple sequence alignment - TraesCS4A01G327300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G327300 chr4A 100.000 4724 0 0 1 4724 613764165 613768888 0.000000e+00 8724
1 TraesCS4A01G327300 chr4A 79.178 1412 271 20 2191 3589 604849265 604847864 0.000000e+00 957
2 TraesCS4A01G327300 chr5D 90.750 2519 182 19 2163 4635 555930819 555928306 0.000000e+00 3314
3 TraesCS4A01G327300 chr5D 88.832 2131 182 28 2059 4137 555070483 555068357 0.000000e+00 2566
4 TraesCS4A01G327300 chr5D 87.189 1850 188 29 2200 4014 555659573 555657738 0.000000e+00 2058
5 TraesCS4A01G327300 chr5D 89.725 1382 119 15 695 2063 555932261 555930890 0.000000e+00 1744
6 TraesCS4A01G327300 chr5D 90.377 1008 88 8 1012 2017 556035820 556034820 0.000000e+00 1315
7 TraesCS4A01G327300 chr5D 88.764 1068 106 12 1010 2066 555071576 555070512 0.000000e+00 1295
8 TraesCS4A01G327300 chr5D 85.714 833 113 5 1010 1841 555660822 555659995 0.000000e+00 874
9 TraesCS4A01G327300 chr5D 78.441 821 160 14 1035 1848 555916793 555915983 1.950000e-143 520
10 TraesCS4A01G327300 chr5D 86.400 375 30 10 312 681 555932704 555932346 1.590000e-104 390
11 TraesCS4A01G327300 chr5D 80.889 450 36 16 4197 4611 555068339 555067905 4.590000e-80 309
12 TraesCS4A01G327300 chr5B 89.768 2629 181 35 2163 4724 695990953 695993560 0.000000e+00 3284
13 TraesCS4A01G327300 chr5B 90.851 1563 120 10 2059 3598 695704539 695706101 0.000000e+00 2073
14 TraesCS4A01G327300 chr5B 86.627 1862 197 23 2188 4011 695962996 695964843 0.000000e+00 2012
15 TraesCS4A01G327300 chr5B 89.840 1378 122 11 695 2063 695989514 695990882 0.000000e+00 1753
16 TraesCS4A01G327300 chr5B 88.140 1231 121 17 854 2063 695703276 695704502 0.000000e+00 1441
17 TraesCS4A01G327300 chr5B 79.484 1433 269 22 2178 3597 710344203 710345623 0.000000e+00 994
18 TraesCS4A01G327300 chr5B 86.832 805 94 4 1006 1809 695834556 695835349 0.000000e+00 889
19 TraesCS4A01G327300 chr5B 78.550 1338 260 26 2157 3477 695950994 695952321 0.000000e+00 856
20 TraesCS4A01G327300 chr5B 85.190 844 114 9 995 1834 695961075 695961911 0.000000e+00 856
21 TraesCS4A01G327300 chr5B 79.912 1130 214 12 2167 3289 695550431 695551554 0.000000e+00 817
22 TraesCS4A01G327300 chr5B 80.877 1072 110 46 3616 4652 695706147 695707158 0.000000e+00 756
23 TraesCS4A01G327300 chr5B 89.381 226 17 4 320 545 695988920 695989138 1.290000e-70 278


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G327300 chr4A 613764165 613768888 4723 False 8724.000000 8724 100.000000 1 4724 1 chr4A.!!$F1 4723
1 TraesCS4A01G327300 chr4A 604847864 604849265 1401 True 957.000000 957 79.178000 2191 3589 1 chr4A.!!$R1 1398
2 TraesCS4A01G327300 chr5D 555928306 555932704 4398 True 1816.000000 3314 88.958333 312 4635 3 chr5D.!!$R5 4323
3 TraesCS4A01G327300 chr5D 555657738 555660822 3084 True 1466.000000 2058 86.451500 1010 4014 2 chr5D.!!$R4 3004
4 TraesCS4A01G327300 chr5D 555067905 555071576 3671 True 1390.000000 2566 86.161667 1010 4611 3 chr5D.!!$R3 3601
5 TraesCS4A01G327300 chr5D 556034820 556035820 1000 True 1315.000000 1315 90.377000 1012 2017 1 chr5D.!!$R2 1005
6 TraesCS4A01G327300 chr5D 555915983 555916793 810 True 520.000000 520 78.441000 1035 1848 1 chr5D.!!$R1 813
7 TraesCS4A01G327300 chr5B 695988920 695993560 4640 False 1771.666667 3284 89.663000 320 4724 3 chr5B.!!$F7 4404
8 TraesCS4A01G327300 chr5B 695961075 695964843 3768 False 1434.000000 2012 85.908500 995 4011 2 chr5B.!!$F6 3016
9 TraesCS4A01G327300 chr5B 695703276 695707158 3882 False 1423.333333 2073 86.622667 854 4652 3 chr5B.!!$F5 3798
10 TraesCS4A01G327300 chr5B 710344203 710345623 1420 False 994.000000 994 79.484000 2178 3597 1 chr5B.!!$F4 1419
11 TraesCS4A01G327300 chr5B 695834556 695835349 793 False 889.000000 889 86.832000 1006 1809 1 chr5B.!!$F2 803
12 TraesCS4A01G327300 chr5B 695950994 695952321 1327 False 856.000000 856 78.550000 2157 3477 1 chr5B.!!$F3 1320
13 TraesCS4A01G327300 chr5B 695550431 695551554 1123 False 817.000000 817 79.912000 2167 3289 1 chr5B.!!$F1 1122

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
608 771 0.108804 GTGCTCCAACGCTACTGCTA 60.109 55.000 0.00 0.0 36.97 3.49 F
609 772 0.173481 TGCTCCAACGCTACTGCTAG 59.827 55.000 0.00 0.0 36.97 3.42 F
948 1197 0.240145 CCAGCAGCACACATGACAAG 59.760 55.000 0.00 0.0 0.00 3.16 F
1332 1582 0.605589 CCACTCGCTTCCTCAAGACT 59.394 55.000 0.00 0.0 0.00 3.24 F
1486 1736 1.670811 CTCGGTTGTGTGCTCTGTTTT 59.329 47.619 0.00 0.0 0.00 2.43 F
2966 4064 0.893727 GTGGTAGGTGGTGGCCAAAG 60.894 60.000 7.24 0.0 34.18 2.77 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1435 1685 0.879765 GCATGCTCAGTCTTGTTGCT 59.120 50.000 11.37 0.0 0.00 3.91 R
1439 1689 0.959372 GCCTGCATGCTCAGTCTTGT 60.959 55.000 20.33 0.0 32.32 3.16 R
2853 3951 0.886490 CCTTGCCATCATAGCCGACC 60.886 60.000 0.00 0.0 0.00 4.79 R
2966 4064 2.351738 CCTTGACGATTTGCCAAACTCC 60.352 50.000 0.00 0.0 0.00 3.85 R
3054 4152 3.068732 TCAGAGATCGAACATGGCTTAGG 59.931 47.826 0.00 0.0 0.00 2.69 R
4097 5238 0.394216 CTGCGGGATGGTTTGGATGA 60.394 55.000 0.00 0.0 0.00 2.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 5.728351 TTTCTTGTTCTCCTTTGTACACG 57.272 39.130 0.00 0.00 0.00 4.49
47 48 4.395959 TCTTGTTCTCCTTTGTACACGT 57.604 40.909 0.00 0.00 0.00 4.49
48 49 5.518848 TCTTGTTCTCCTTTGTACACGTA 57.481 39.130 0.00 0.00 0.00 3.57
49 50 5.284079 TCTTGTTCTCCTTTGTACACGTAC 58.716 41.667 0.00 0.22 36.63 3.67
50 51 4.652421 TGTTCTCCTTTGTACACGTACA 57.348 40.909 5.94 5.94 43.61 2.90
51 52 5.204409 TGTTCTCCTTTGTACACGTACAT 57.796 39.130 10.66 0.00 44.54 2.29
52 53 6.330004 TGTTCTCCTTTGTACACGTACATA 57.670 37.500 10.66 5.71 44.54 2.29
53 54 6.384224 TGTTCTCCTTTGTACACGTACATAG 58.616 40.000 16.38 16.38 44.54 2.23
54 55 6.016024 TGTTCTCCTTTGTACACGTACATAGT 60.016 38.462 19.67 0.00 44.54 2.12
55 56 7.174772 TGTTCTCCTTTGTACACGTACATAGTA 59.825 37.037 19.67 8.97 44.54 1.82
56 57 7.076842 TCTCCTTTGTACACGTACATAGTAC 57.923 40.000 19.67 10.78 44.54 2.73
57 58 6.654582 TCTCCTTTGTACACGTACATAGTACA 59.345 38.462 19.67 14.55 44.54 2.90
58 59 7.337689 TCTCCTTTGTACACGTACATAGTACAT 59.662 37.037 19.67 0.00 45.09 2.29
59 60 7.829725 TCCTTTGTACACGTACATAGTACATT 58.170 34.615 19.67 0.00 45.09 2.71
60 61 7.970061 TCCTTTGTACACGTACATAGTACATTC 59.030 37.037 19.67 0.00 45.09 2.67
61 62 7.221452 CCTTTGTACACGTACATAGTACATTCC 59.779 40.741 19.67 0.00 45.09 3.01
62 63 6.135290 TGTACACGTACATAGTACATTCCC 57.865 41.667 14.55 0.00 42.08 3.97
63 64 5.651576 TGTACACGTACATAGTACATTCCCA 59.348 40.000 14.55 0.00 42.08 4.37
64 65 5.664294 ACACGTACATAGTACATTCCCAA 57.336 39.130 7.93 0.00 0.00 4.12
65 66 6.040209 ACACGTACATAGTACATTCCCAAA 57.960 37.500 7.93 0.00 0.00 3.28
66 67 6.465948 ACACGTACATAGTACATTCCCAAAA 58.534 36.000 7.93 0.00 0.00 2.44
67 68 7.107542 ACACGTACATAGTACATTCCCAAAAT 58.892 34.615 7.93 0.00 0.00 1.82
68 69 7.608761 ACACGTACATAGTACATTCCCAAAATT 59.391 33.333 7.93 0.00 0.00 1.82
69 70 8.455682 CACGTACATAGTACATTCCCAAAATTT 58.544 33.333 7.93 0.00 0.00 1.82
70 71 9.669887 ACGTACATAGTACATTCCCAAAATTTA 57.330 29.630 7.93 0.00 0.00 1.40
100 101 9.326413 ACTATGCAGTTAATATGACAAACTACC 57.674 33.333 0.00 0.00 32.35 3.18
101 102 9.325198 CTATGCAGTTAATATGACAAACTACCA 57.675 33.333 0.00 0.00 32.35 3.25
102 103 8.752005 ATGCAGTTAATATGACAAACTACCAT 57.248 30.769 0.00 0.00 32.35 3.55
103 104 9.845740 ATGCAGTTAATATGACAAACTACCATA 57.154 29.630 0.00 0.00 32.35 2.74
104 105 9.845740 TGCAGTTAATATGACAAACTACCATAT 57.154 29.630 0.00 0.00 35.64 1.78
137 138 9.720874 AGATTATTCATATATGCCACCTCTAGA 57.279 33.333 7.92 0.00 0.00 2.43
138 139 9.979578 GATTATTCATATATGCCACCTCTAGAG 57.020 37.037 13.18 13.18 0.00 2.43
139 140 9.720874 ATTATTCATATATGCCACCTCTAGAGA 57.279 33.333 21.76 0.46 0.00 3.10
140 141 9.547279 TTATTCATATATGCCACCTCTAGAGAA 57.453 33.333 21.76 3.14 0.00 2.87
141 142 8.621126 ATTCATATATGCCACCTCTAGAGAAT 57.379 34.615 21.76 5.99 0.00 2.40
142 143 9.720874 ATTCATATATGCCACCTCTAGAGAATA 57.279 33.333 21.76 10.46 0.00 1.75
143 144 8.759481 TCATATATGCCACCTCTAGAGAATAG 57.241 38.462 21.76 6.75 0.00 1.73
144 145 8.340002 TCATATATGCCACCTCTAGAGAATAGT 58.660 37.037 21.76 7.43 0.00 2.12
145 146 8.976353 CATATATGCCACCTCTAGAGAATAGTT 58.024 37.037 21.76 4.60 0.00 2.24
146 147 5.799827 ATGCCACCTCTAGAGAATAGTTC 57.200 43.478 21.76 5.40 0.00 3.01
147 148 4.610333 TGCCACCTCTAGAGAATAGTTCA 58.390 43.478 21.76 7.66 0.00 3.18
148 149 5.211973 TGCCACCTCTAGAGAATAGTTCAT 58.788 41.667 21.76 0.00 0.00 2.57
149 150 5.663106 TGCCACCTCTAGAGAATAGTTCATT 59.337 40.000 21.76 0.00 0.00 2.57
150 151 6.839134 TGCCACCTCTAGAGAATAGTTCATTA 59.161 38.462 21.76 0.00 0.00 1.90
151 152 7.344612 TGCCACCTCTAGAGAATAGTTCATTAA 59.655 37.037 21.76 0.00 0.00 1.40
152 153 8.204836 GCCACCTCTAGAGAATAGTTCATTAAA 58.795 37.037 21.76 0.00 0.00 1.52
153 154 9.535878 CCACCTCTAGAGAATAGTTCATTAAAC 57.464 37.037 21.76 0.00 38.21 2.01
171 172 8.714179 TCATTAAACTGTTTTACACTACATCCG 58.286 33.333 11.48 0.00 0.00 4.18
172 173 5.934935 AAACTGTTTTACACTACATCCGG 57.065 39.130 0.00 0.00 0.00 5.14
173 174 3.934068 ACTGTTTTACACTACATCCGGG 58.066 45.455 0.00 0.00 0.00 5.73
174 175 2.676342 CTGTTTTACACTACATCCGGGC 59.324 50.000 0.00 0.00 0.00 6.13
175 176 2.038689 TGTTTTACACTACATCCGGGCA 59.961 45.455 0.00 0.00 0.00 5.36
176 177 2.676342 GTTTTACACTACATCCGGGCAG 59.324 50.000 0.00 0.00 0.00 4.85
177 178 0.828022 TTACACTACATCCGGGCAGG 59.172 55.000 0.00 0.00 42.97 4.85
178 179 1.046472 TACACTACATCCGGGCAGGG 61.046 60.000 0.00 0.00 41.52 4.45
179 180 3.480133 ACTACATCCGGGCAGGGC 61.480 66.667 0.00 0.00 41.52 5.19
180 181 3.164269 CTACATCCGGGCAGGGCT 61.164 66.667 0.00 0.00 41.52 5.19
181 182 3.161450 TACATCCGGGCAGGGCTC 61.161 66.667 0.00 0.00 41.52 4.70
182 183 3.993865 TACATCCGGGCAGGGCTCA 62.994 63.158 0.00 0.00 41.52 4.26
183 184 4.559063 CATCCGGGCAGGGCTCAG 62.559 72.222 0.00 0.00 41.52 3.35
184 185 4.804420 ATCCGGGCAGGGCTCAGA 62.804 66.667 0.00 0.00 41.52 3.27
186 187 4.479993 CCGGGCAGGGCTCAGAAG 62.480 72.222 0.00 0.00 35.97 2.85
187 188 3.710722 CGGGCAGGGCTCAGAAGT 61.711 66.667 0.00 0.00 0.00 3.01
188 189 2.359169 CGGGCAGGGCTCAGAAGTA 61.359 63.158 0.00 0.00 0.00 2.24
189 190 1.524482 GGGCAGGGCTCAGAAGTAG 59.476 63.158 0.00 0.00 0.00 2.57
190 191 1.153269 GGCAGGGCTCAGAAGTAGC 60.153 63.158 0.00 0.00 39.33 3.58
197 198 2.524569 GCTCAGAAGTAGCCCATCTC 57.475 55.000 0.00 0.00 33.73 2.75
198 199 2.038659 GCTCAGAAGTAGCCCATCTCT 58.961 52.381 0.00 0.00 33.73 3.10
199 200 2.035832 GCTCAGAAGTAGCCCATCTCTC 59.964 54.545 0.00 0.00 33.73 3.20
200 201 3.295093 CTCAGAAGTAGCCCATCTCTCA 58.705 50.000 0.00 0.00 0.00 3.27
201 202 3.027412 TCAGAAGTAGCCCATCTCTCAC 58.973 50.000 0.00 0.00 0.00 3.51
202 203 2.762887 CAGAAGTAGCCCATCTCTCACA 59.237 50.000 0.00 0.00 0.00 3.58
203 204 3.387374 CAGAAGTAGCCCATCTCTCACAT 59.613 47.826 0.00 0.00 0.00 3.21
204 205 3.387374 AGAAGTAGCCCATCTCTCACATG 59.613 47.826 0.00 0.00 0.00 3.21
205 206 3.037851 AGTAGCCCATCTCTCACATGA 57.962 47.619 0.00 0.00 0.00 3.07
206 207 3.378512 AGTAGCCCATCTCTCACATGAA 58.621 45.455 0.00 0.00 0.00 2.57
207 208 3.776969 AGTAGCCCATCTCTCACATGAAA 59.223 43.478 0.00 0.00 0.00 2.69
208 209 3.726557 AGCCCATCTCTCACATGAAAA 57.273 42.857 0.00 0.00 0.00 2.29
209 210 4.246712 AGCCCATCTCTCACATGAAAAT 57.753 40.909 0.00 0.00 0.00 1.82
210 211 4.205587 AGCCCATCTCTCACATGAAAATC 58.794 43.478 0.00 0.00 0.00 2.17
211 212 3.317430 GCCCATCTCTCACATGAAAATCC 59.683 47.826 0.00 0.00 0.00 3.01
212 213 4.789807 CCCATCTCTCACATGAAAATCCT 58.210 43.478 0.00 0.00 0.00 3.24
213 214 5.688500 GCCCATCTCTCACATGAAAATCCTA 60.689 44.000 0.00 0.00 0.00 2.94
214 215 5.762218 CCCATCTCTCACATGAAAATCCTAC 59.238 44.000 0.00 0.00 0.00 3.18
215 216 6.351711 CCATCTCTCACATGAAAATCCTACA 58.648 40.000 0.00 0.00 0.00 2.74
216 217 6.825213 CCATCTCTCACATGAAAATCCTACAA 59.175 38.462 0.00 0.00 0.00 2.41
217 218 7.337689 CCATCTCTCACATGAAAATCCTACAAA 59.662 37.037 0.00 0.00 0.00 2.83
218 219 8.733458 CATCTCTCACATGAAAATCCTACAAAA 58.267 33.333 0.00 0.00 0.00 2.44
219 220 8.868522 TCTCTCACATGAAAATCCTACAAAAT 57.131 30.769 0.00 0.00 0.00 1.82
220 221 9.958180 TCTCTCACATGAAAATCCTACAAAATA 57.042 29.630 0.00 0.00 0.00 1.40
222 223 9.958180 TCTCACATGAAAATCCTACAAAATAGA 57.042 29.630 0.00 0.00 0.00 1.98
245 246 8.354711 AGAAATAACCTAGATGATCGCTATCA 57.645 34.615 3.06 3.06 46.01 2.15
246 247 8.247562 AGAAATAACCTAGATGATCGCTATCAC 58.752 37.037 2.58 0.00 44.79 3.06
247 248 7.468141 AATAACCTAGATGATCGCTATCACA 57.532 36.000 2.58 0.00 44.79 3.58
248 249 5.991933 AACCTAGATGATCGCTATCACAT 57.008 39.130 2.58 0.00 44.79 3.21
249 250 5.991933 ACCTAGATGATCGCTATCACATT 57.008 39.130 2.58 0.00 44.79 2.71
250 251 6.352016 ACCTAGATGATCGCTATCACATTT 57.648 37.500 2.58 0.00 44.79 2.32
251 252 6.393990 ACCTAGATGATCGCTATCACATTTC 58.606 40.000 2.58 0.00 44.79 2.17
252 253 6.210385 ACCTAGATGATCGCTATCACATTTCT 59.790 38.462 2.58 5.34 44.79 2.52
253 254 6.751425 CCTAGATGATCGCTATCACATTTCTC 59.249 42.308 2.58 0.00 44.79 2.87
254 255 6.094193 AGATGATCGCTATCACATTTCTCA 57.906 37.500 2.58 0.00 44.79 3.27
255 256 6.699366 AGATGATCGCTATCACATTTCTCAT 58.301 36.000 2.58 0.00 44.79 2.90
256 257 7.834803 AGATGATCGCTATCACATTTCTCATA 58.165 34.615 2.58 0.00 44.79 2.15
257 258 7.758980 AGATGATCGCTATCACATTTCTCATAC 59.241 37.037 2.58 0.00 44.79 2.39
258 259 6.159293 TGATCGCTATCACATTTCTCATACC 58.841 40.000 0.00 0.00 37.20 2.73
259 260 5.529581 TCGCTATCACATTTCTCATACCA 57.470 39.130 0.00 0.00 0.00 3.25
260 261 6.101650 TCGCTATCACATTTCTCATACCAT 57.898 37.500 0.00 0.00 0.00 3.55
261 262 6.524734 TCGCTATCACATTTCTCATACCATT 58.475 36.000 0.00 0.00 0.00 3.16
262 263 6.992123 TCGCTATCACATTTCTCATACCATTT 59.008 34.615 0.00 0.00 0.00 2.32
263 264 7.498900 TCGCTATCACATTTCTCATACCATTTT 59.501 33.333 0.00 0.00 0.00 1.82
264 265 7.588854 CGCTATCACATTTCTCATACCATTTTG 59.411 37.037 0.00 0.00 0.00 2.44
265 266 8.408601 GCTATCACATTTCTCATACCATTTTGT 58.591 33.333 0.00 0.00 0.00 2.83
270 271 8.810427 CACATTTCTCATACCATTTTGTATTGC 58.190 33.333 0.00 0.00 28.98 3.56
271 272 7.701924 ACATTTCTCATACCATTTTGTATTGCG 59.298 33.333 0.00 0.00 28.98 4.85
272 273 5.168526 TCTCATACCATTTTGTATTGCGC 57.831 39.130 0.00 0.00 28.98 6.09
273 274 4.637977 TCTCATACCATTTTGTATTGCGCA 59.362 37.500 5.66 5.66 28.98 6.09
274 275 5.299028 TCTCATACCATTTTGTATTGCGCAT 59.701 36.000 12.75 3.99 28.98 4.73
275 276 5.280164 TCATACCATTTTGTATTGCGCATG 58.720 37.500 12.75 3.15 28.98 4.06
276 277 2.270047 ACCATTTTGTATTGCGCATGC 58.730 42.857 12.75 7.91 43.20 4.06
277 278 2.094078 ACCATTTTGTATTGCGCATGCT 60.094 40.909 12.75 1.22 43.34 3.79
278 279 3.130164 ACCATTTTGTATTGCGCATGCTA 59.870 39.130 12.75 0.00 43.34 3.49
279 280 4.202141 ACCATTTTGTATTGCGCATGCTAT 60.202 37.500 12.75 3.77 43.34 2.97
280 281 4.746115 CCATTTTGTATTGCGCATGCTATT 59.254 37.500 12.75 4.00 43.34 1.73
281 282 5.234757 CCATTTTGTATTGCGCATGCTATTT 59.765 36.000 12.75 0.64 43.34 1.40
282 283 5.699438 TTTTGTATTGCGCATGCTATTTG 57.301 34.783 12.75 0.00 43.34 2.32
283 284 4.368874 TTGTATTGCGCATGCTATTTGT 57.631 36.364 12.75 0.00 43.34 2.83
284 285 4.368874 TGTATTGCGCATGCTATTTGTT 57.631 36.364 12.75 0.00 43.34 2.83
285 286 4.104066 TGTATTGCGCATGCTATTTGTTG 58.896 39.130 12.75 0.00 43.34 3.33
286 287 2.721274 TTGCGCATGCTATTTGTTGT 57.279 40.000 12.75 0.00 43.34 3.32
287 288 2.721274 TGCGCATGCTATTTGTTGTT 57.279 40.000 17.13 0.00 43.34 2.83
288 289 3.023946 TGCGCATGCTATTTGTTGTTT 57.976 38.095 17.13 0.00 43.34 2.83
289 290 2.985809 TGCGCATGCTATTTGTTGTTTC 59.014 40.909 17.13 0.00 43.34 2.78
290 291 2.345341 GCGCATGCTATTTGTTGTTTCC 59.655 45.455 17.13 0.00 38.39 3.13
291 292 3.573598 CGCATGCTATTTGTTGTTTCCA 58.426 40.909 17.13 0.00 0.00 3.53
292 293 4.175516 CGCATGCTATTTGTTGTTTCCAT 58.824 39.130 17.13 0.00 0.00 3.41
293 294 5.339177 CGCATGCTATTTGTTGTTTCCATA 58.661 37.500 17.13 0.00 0.00 2.74
294 295 5.978919 CGCATGCTATTTGTTGTTTCCATAT 59.021 36.000 17.13 0.00 0.00 1.78
295 296 6.074729 CGCATGCTATTTGTTGTTTCCATATG 60.075 38.462 17.13 0.00 0.00 1.78
296 297 6.979817 GCATGCTATTTGTTGTTTCCATATGA 59.020 34.615 11.37 0.00 0.00 2.15
297 298 7.492020 GCATGCTATTTGTTGTTTCCATATGAA 59.508 33.333 11.37 0.00 0.00 2.57
298 299 9.368674 CATGCTATTTGTTGTTTCCATATGAAA 57.631 29.630 3.65 0.46 40.64 2.69
299 300 9.941325 ATGCTATTTGTTGTTTCCATATGAAAA 57.059 25.926 3.65 0.00 44.30 2.29
300 301 9.941325 TGCTATTTGTTGTTTCCATATGAAAAT 57.059 25.926 3.65 0.90 44.30 1.82
364 365 7.964624 ACTAGTAATAACAGGCTAGATTTCCC 58.035 38.462 0.00 0.00 35.96 3.97
373 374 1.209747 GCTAGATTTCCCGGTCCTTGT 59.790 52.381 0.00 0.00 0.00 3.16
380 381 0.179012 TCCCGGTCCTTGTCAAAACC 60.179 55.000 0.00 6.70 0.00 3.27
381 382 0.179001 CCCGGTCCTTGTCAAAACCT 60.179 55.000 0.00 0.00 0.00 3.50
445 446 0.323633 TCAACATGCTGGACCCATGG 60.324 55.000 4.14 4.14 43.29 3.66
472 473 0.242825 CCATTGCCAGCTGTTGTCAG 59.757 55.000 13.81 0.00 43.87 3.51
507 508 6.652900 AGCACTCACTTATTCCTTTCTTCTTC 59.347 38.462 0.00 0.00 0.00 2.87
515 516 8.264347 ACTTATTCCTTTCTTCTTCCTCTGATC 58.736 37.037 0.00 0.00 0.00 2.92
538 568 4.460731 CAGGAAAATTCTCTCCACTTTCCC 59.539 45.833 7.99 0.00 44.01 3.97
539 569 4.106341 AGGAAAATTCTCTCCACTTTCCCA 59.894 41.667 7.99 0.00 44.01 4.37
540 570 4.218635 GGAAAATTCTCTCCACTTTCCCAC 59.781 45.833 0.00 0.00 39.32 4.61
541 571 3.441500 AATTCTCTCCACTTTCCCACC 57.558 47.619 0.00 0.00 0.00 4.61
542 572 1.814429 TTCTCTCCACTTTCCCACCA 58.186 50.000 0.00 0.00 0.00 4.17
553 583 1.205055 TTCCCACCACACACAGTACA 58.795 50.000 0.00 0.00 0.00 2.90
556 586 2.300723 TCCCACCACACACAGTACATAC 59.699 50.000 0.00 0.00 0.00 2.39
577 740 8.712363 ACATACATTGTGTTTCGATCTATATGC 58.288 33.333 0.00 0.00 37.11 3.14
580 743 8.887036 ACATTGTGTTTCGATCTATATGCTAA 57.113 30.769 0.00 0.00 0.00 3.09
602 765 2.047274 GGCAGTGCTCCAACGCTA 60.047 61.111 16.11 0.00 0.00 4.26
603 766 2.391389 GGCAGTGCTCCAACGCTAC 61.391 63.158 16.11 0.00 0.00 3.58
604 767 1.374758 GCAGTGCTCCAACGCTACT 60.375 57.895 8.18 0.00 0.00 2.57
605 768 1.630244 GCAGTGCTCCAACGCTACTG 61.630 60.000 8.18 0.00 39.65 2.74
606 769 1.374758 AGTGCTCCAACGCTACTGC 60.375 57.895 0.00 0.00 0.00 4.40
607 770 1.374758 GTGCTCCAACGCTACTGCT 60.375 57.895 0.00 0.00 36.97 4.24
608 771 0.108804 GTGCTCCAACGCTACTGCTA 60.109 55.000 0.00 0.00 36.97 3.49
609 772 0.173481 TGCTCCAACGCTACTGCTAG 59.827 55.000 0.00 0.00 36.97 3.42
610 773 1.148759 GCTCCAACGCTACTGCTAGC 61.149 60.000 8.10 8.10 41.97 3.42
611 774 0.457851 CTCCAACGCTACTGCTAGCT 59.542 55.000 17.23 0.00 43.07 3.32
614 777 1.405821 CCAACGCTACTGCTAGCTACT 59.594 52.381 17.23 0.31 43.07 2.57
619 782 3.132160 CGCTACTGCTAGCTACTGTAGA 58.868 50.000 26.09 0.00 43.07 2.59
627 790 6.834451 ACTGCTAGCTACTGTAGATTTCCTAA 59.166 38.462 18.64 0.00 0.00 2.69
642 805 4.314740 TTCCTAACAACATTTGCACACC 57.685 40.909 0.00 0.00 0.00 4.16
643 806 2.292016 TCCTAACAACATTTGCACACCG 59.708 45.455 0.00 0.00 0.00 4.94
648 812 3.380142 ACAACATTTGCACACCGAATTC 58.620 40.909 0.00 0.00 0.00 2.17
681 845 5.418676 TCGTCATCTGCATTCTGAAATACA 58.581 37.500 0.00 0.00 0.00 2.29
682 846 5.521372 TCGTCATCTGCATTCTGAAATACAG 59.479 40.000 9.93 9.93 46.97 2.74
684 848 6.476706 CGTCATCTGCATTCTGAAATACAGTA 59.523 38.462 13.75 0.00 45.86 2.74
686 850 9.481340 GTCATCTGCATTCTGAAATACAGTATA 57.519 33.333 13.75 1.23 45.86 1.47
689 853 8.315391 TCTGCATTCTGAAATACAGTATATGC 57.685 34.615 13.55 13.55 45.23 3.14
693 857 7.531871 GCATTCTGAAATACAGTATATGCAACG 59.468 37.037 14.84 0.00 44.88 4.10
716 951 8.255394 ACGCTTAATAATTAACCTAAACACGT 57.745 30.769 0.00 0.00 0.00 4.49
723 958 9.830294 AATAATTAACCTAAACACGTTTGCTAC 57.170 29.630 5.42 0.00 34.23 3.58
724 959 7.500720 AATTAACCTAAACACGTTTGCTACT 57.499 32.000 5.42 0.00 34.23 2.57
725 960 8.606040 AATTAACCTAAACACGTTTGCTACTA 57.394 30.769 5.42 0.00 34.23 1.82
730 965 4.823790 AAACACGTTTGCTACTAAAGGG 57.176 40.909 0.00 0.00 31.60 3.95
733 968 1.092348 CGTTTGCTACTAAAGGGGCC 58.908 55.000 0.00 0.00 0.00 5.80
741 976 0.927029 ACTAAAGGGGCCAGATTCCC 59.073 55.000 4.39 0.00 43.46 3.97
742 977 0.926293 CTAAAGGGGCCAGATTCCCA 59.074 55.000 4.39 0.00 45.73 4.37
752 987 1.419387 CCAGATTCCCATGTCCCTCTC 59.581 57.143 0.00 0.00 0.00 3.20
755 990 2.122768 GATTCCCATGTCCCTCTCTGT 58.877 52.381 0.00 0.00 0.00 3.41
765 1000 5.988865 TGTCCCTCTCTGTACTCCTTATA 57.011 43.478 0.00 0.00 0.00 0.98
766 1001 6.337185 TGTCCCTCTCTGTACTCCTTATAA 57.663 41.667 0.00 0.00 0.00 0.98
768 1003 6.834451 TGTCCCTCTCTGTACTCCTTATAAAG 59.166 42.308 0.00 0.00 0.00 1.85
769 1004 6.834969 GTCCCTCTCTGTACTCCTTATAAAGT 59.165 42.308 0.00 0.00 0.00 2.66
798 1038 6.150641 GCATGTATATCATTGTGCTTGATCCT 59.849 38.462 0.00 0.00 35.50 3.24
806 1046 4.498894 TTGTGCTTGATCCTCTCATGAT 57.501 40.909 0.00 0.00 32.72 2.45
861 1101 5.582950 TCCCACCTATTATTGCTTGCTAT 57.417 39.130 0.00 0.00 0.00 2.97
895 1135 6.831664 ATTATTCCTTGCTCCTTTCCTCTA 57.168 37.500 0.00 0.00 0.00 2.43
904 1144 2.625790 CTCCTTTCCTCTACCTCCATCG 59.374 54.545 0.00 0.00 0.00 3.84
917 1157 2.370445 CCATCGGGCCACTTCTCCT 61.370 63.158 4.39 0.00 0.00 3.69
926 1166 1.338579 GCCACTTCTCCTTCTCCACTG 60.339 57.143 0.00 0.00 0.00 3.66
948 1197 0.240145 CCAGCAGCACACATGACAAG 59.760 55.000 0.00 0.00 0.00 3.16
956 1205 1.404748 CACACATGACAAGCACCAACA 59.595 47.619 0.00 0.00 0.00 3.33
1111 1361 3.148279 GGGTCCGCGGTGAGATCT 61.148 66.667 27.15 0.00 0.00 2.75
1113 1363 1.389609 GGGTCCGCGGTGAGATCTTA 61.390 60.000 27.15 0.00 0.00 2.10
1154 1404 4.607606 CATGCATGCCGCGCTCAG 62.608 66.667 14.93 0.00 46.97 3.35
1206 1456 1.138859 CAGGTGAAGGCGTGGATATCA 59.861 52.381 4.83 0.00 0.00 2.15
1299 1549 3.423154 CGTGGCGGCTTCAAGGAC 61.423 66.667 11.43 0.00 0.00 3.85
1332 1582 0.605589 CCACTCGCTTCCTCAAGACT 59.394 55.000 0.00 0.00 0.00 3.24
1353 1603 1.857217 CTCGATTCTCGCTGTGGAATG 59.143 52.381 8.85 4.04 40.21 2.67
1392 1642 3.056313 GAAGGCCCGCATCAAGCAC 62.056 63.158 0.00 0.00 46.13 4.40
1434 1684 4.040339 TGTTACAAGCTGAGTGAGATTCCA 59.960 41.667 2.51 0.00 0.00 3.53
1435 1685 3.777106 ACAAGCTGAGTGAGATTCCAA 57.223 42.857 0.00 0.00 0.00 3.53
1439 1689 2.039480 AGCTGAGTGAGATTCCAAGCAA 59.961 45.455 0.00 0.00 0.00 3.91
1486 1736 1.670811 CTCGGTTGTGTGCTCTGTTTT 59.329 47.619 0.00 0.00 0.00 2.43
1705 1958 3.206150 TCAGTCTCACAAAAGCCAGTTC 58.794 45.455 0.00 0.00 0.00 3.01
1878 2164 9.528018 TTTTTCAGAACATTCCTTACATTTGTC 57.472 29.630 0.00 0.00 0.00 3.18
1914 2201 6.887013 TGGTAGTTACTGGTTACTGTTTCAA 58.113 36.000 0.00 0.00 0.00 2.69
1916 2203 6.073385 GGTAGTTACTGGTTACTGTTTCAAGC 60.073 42.308 0.00 0.00 0.00 4.01
1974 2312 4.400251 ACATGGCTTGTACAATTCATCCTG 59.600 41.667 9.13 8.36 36.57 3.86
1981 2319 4.832248 TGTACAATTCATCCTGGTCACTC 58.168 43.478 0.00 0.00 0.00 3.51
2042 2999 5.749588 TGAGAAACAATGTTTGCACATCAAG 59.250 36.000 16.78 0.00 43.34 3.02
2139 3167 6.460781 CACTTGTTAACCACTCCAGTACATA 58.539 40.000 2.48 0.00 0.00 2.29
2143 3171 7.305813 TGTTAACCACTCCAGTACATAAAGA 57.694 36.000 2.48 0.00 0.00 2.52
2153 3181 5.062934 TCCAGTACATAAAGAATTTGCGTCG 59.937 40.000 0.00 0.00 39.63 5.12
2295 3392 3.886505 AGTGTGCTTTTCCGGACAATAAA 59.113 39.130 1.83 0.31 36.99 1.40
2297 3394 5.708230 AGTGTGCTTTTCCGGACAATAAATA 59.292 36.000 1.83 0.00 36.99 1.40
2496 3594 8.659491 GTTTCCAATAAAATCCTGAAGAAATGC 58.341 33.333 0.00 0.00 0.00 3.56
2782 3880 4.377839 TTTATCTCTGAAGAGCGTGGAG 57.622 45.455 2.26 0.00 41.80 3.86
2910 4008 5.996513 AGTCCATGACATGATGCTAGAAATC 59.003 40.000 17.24 0.00 34.60 2.17
2966 4064 0.893727 GTGGTAGGTGGTGGCCAAAG 60.894 60.000 7.24 0.00 34.18 2.77
3034 4132 4.021807 AGCACATTGATCATGAACTTGCAA 60.022 37.500 0.00 0.00 34.86 4.08
3054 4152 4.613031 GCAAATTTACTCGCACAAGAAGAC 59.387 41.667 0.00 0.00 0.00 3.01
3185 4283 8.591940 TGAGGATTTGGAAGAGTATGATATGAG 58.408 37.037 0.00 0.00 0.00 2.90
3611 4715 5.901276 TCCGGTCTTTATGGATAAGTAGGTT 59.099 40.000 0.00 0.00 0.00 3.50
3643 4775 1.581447 CGCCAGTTTCCCTTCAAGC 59.419 57.895 0.00 0.00 0.00 4.01
3656 4791 8.424133 GTTTCCCTTCAAGCATTTTATATGGAT 58.576 33.333 0.00 0.00 0.00 3.41
3849 4990 3.610911 GTTACAGTCCAAGGATTCCCAG 58.389 50.000 0.00 0.00 33.88 4.45
3857 4998 2.243221 CCAAGGATTCCCAGGTCTGAAT 59.757 50.000 0.00 0.00 34.02 2.57
3858 4999 3.285484 CAAGGATTCCCAGGTCTGAATG 58.715 50.000 0.00 0.00 31.56 2.67
3859 5000 1.849039 AGGATTCCCAGGTCTGAATGG 59.151 52.381 0.00 3.70 31.56 3.16
3865 5006 1.549203 CCAGGTCTGAATGGGTTTGG 58.451 55.000 0.00 0.00 32.63 3.28
3889 5030 9.239551 TGGCATCTATAGTAATTATACGTCAGT 57.760 33.333 0.00 0.00 37.11 3.41
4054 5195 2.435410 GGGCGTTACACCTTCCGG 60.435 66.667 0.00 0.00 0.00 5.14
4131 5272 2.351726 CCCGCAGTTACTATTTGTGAGC 59.648 50.000 0.00 0.00 0.00 4.26
4173 5314 2.029838 CAGTGAAGATACTGGTGGCC 57.970 55.000 0.00 0.00 43.35 5.36
4175 5316 1.985159 AGTGAAGATACTGGTGGCCAA 59.015 47.619 7.24 0.00 30.80 4.52
4331 5472 9.995003 AAATGCATCTTTTGTCCAAAACTTATA 57.005 25.926 0.00 0.00 35.57 0.98
4381 5541 1.668826 TGGCTGGGTTACTTGGAGAT 58.331 50.000 0.00 0.00 0.00 2.75
4397 5557 4.037222 TGGAGATTTGGAGTGCCATACTA 58.963 43.478 0.00 0.00 45.46 1.82
4410 5570 2.749800 GCCATACTAAAGGAAGGCCTGG 60.750 54.545 5.69 0.00 46.28 4.45
4424 5584 2.310052 AGGCCTGGAAATAAGAAGCTGT 59.690 45.455 3.11 0.00 0.00 4.40
4494 5658 4.941263 TGCTAATTGCTACGTTGAATTCCT 59.059 37.500 2.27 0.00 43.37 3.36
4501 5665 6.417191 TGCTACGTTGAATTCCTATTGTTC 57.583 37.500 2.27 0.00 0.00 3.18
4524 5688 9.516314 GTTCACTTTTCATAATTATTAGGGCAC 57.484 33.333 0.00 0.00 0.00 5.01
4527 5691 9.301153 CACTTTTCATAATTATTAGGGCACAAC 57.699 33.333 0.00 0.00 0.00 3.32
4536 5700 1.267121 TAGGGCACAACCTCTCTGTC 58.733 55.000 0.00 0.00 42.09 3.51
4538 5702 0.398318 GGGCACAACCTCTCTGTCTT 59.602 55.000 0.00 0.00 39.10 3.01
4549 5730 3.558746 CCTCTCTGTCTTGGCATTTCTGT 60.559 47.826 0.00 0.00 0.00 3.41
4614 5803 3.004839 TGCTCGCTCGAGAATTAAGCTAT 59.995 43.478 18.75 0.00 44.53 2.97
4615 5804 4.215613 TGCTCGCTCGAGAATTAAGCTATA 59.784 41.667 18.75 0.00 44.53 1.31
4679 5868 4.218417 TGATTGCCTTTCTTGCTTACCTTC 59.782 41.667 0.00 0.00 0.00 3.46
4715 5904 8.147642 ACTCAAGAGTCAAGACTGTATTTTTG 57.852 34.615 7.57 0.00 42.66 2.44
4718 5907 7.283127 TCAAGAGTCAAGACTGTATTTTTGCTT 59.717 33.333 7.57 0.00 42.66 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 6.149807 ACGTGTACAAAGGAGAACAAGAAAAA 59.850 34.615 0.00 0.00 0.00 1.94
23 24 5.644636 ACGTGTACAAAGGAGAACAAGAAAA 59.355 36.000 0.00 0.00 0.00 2.29
24 25 5.180271 ACGTGTACAAAGGAGAACAAGAAA 58.820 37.500 0.00 0.00 0.00 2.52
25 26 4.761975 ACGTGTACAAAGGAGAACAAGAA 58.238 39.130 0.00 0.00 0.00 2.52
26 27 4.395959 ACGTGTACAAAGGAGAACAAGA 57.604 40.909 0.00 0.00 0.00 3.02
27 28 5.045215 TGTACGTGTACAAAGGAGAACAAG 58.955 41.667 10.27 0.00 42.49 3.16
28 29 5.008619 TGTACGTGTACAAAGGAGAACAA 57.991 39.130 10.27 0.00 42.49 2.83
29 30 4.652421 TGTACGTGTACAAAGGAGAACA 57.348 40.909 10.27 0.00 42.49 3.18
40 41 6.135290 TGGGAATGTACTATGTACGTGTAC 57.865 41.667 15.29 15.29 37.60 2.90
41 42 6.772360 TTGGGAATGTACTATGTACGTGTA 57.228 37.500 0.00 0.00 0.00 2.90
42 43 5.664294 TTGGGAATGTACTATGTACGTGT 57.336 39.130 0.00 0.00 0.00 4.49
43 44 6.971527 TTTTGGGAATGTACTATGTACGTG 57.028 37.500 0.00 0.00 0.00 4.49
44 45 8.570068 AAATTTTGGGAATGTACTATGTACGT 57.430 30.769 0.00 0.00 0.00 3.57
74 75 9.326413 GGTAGTTTGTCATATTAACTGCATAGT 57.674 33.333 0.00 0.00 36.58 2.12
75 76 9.325198 TGGTAGTTTGTCATATTAACTGCATAG 57.675 33.333 0.00 0.00 36.58 2.23
76 77 9.845740 ATGGTAGTTTGTCATATTAACTGCATA 57.154 29.630 0.00 0.00 36.58 3.14
77 78 8.752005 ATGGTAGTTTGTCATATTAACTGCAT 57.248 30.769 0.00 0.00 36.58 3.96
78 79 9.845740 ATATGGTAGTTTGTCATATTAACTGCA 57.154 29.630 0.00 0.00 36.58 4.41
111 112 9.720874 TCTAGAGGTGGCATATATGAATAATCT 57.279 33.333 17.10 14.01 0.00 2.40
112 113 9.979578 CTCTAGAGGTGGCATATATGAATAATC 57.020 37.037 17.10 7.98 0.00 1.75
113 114 9.720874 TCTCTAGAGGTGGCATATATGAATAAT 57.279 33.333 19.67 0.00 0.00 1.28
114 115 9.547279 TTCTCTAGAGGTGGCATATATGAATAA 57.453 33.333 19.67 0.00 0.00 1.40
115 116 9.720874 ATTCTCTAGAGGTGGCATATATGAATA 57.279 33.333 19.67 0.00 0.00 1.75
116 117 8.621126 ATTCTCTAGAGGTGGCATATATGAAT 57.379 34.615 19.67 4.78 0.00 2.57
117 118 9.194972 CTATTCTCTAGAGGTGGCATATATGAA 57.805 37.037 19.67 2.56 0.00 2.57
118 119 8.340002 ACTATTCTCTAGAGGTGGCATATATGA 58.660 37.037 19.67 0.00 0.00 2.15
119 120 8.532186 ACTATTCTCTAGAGGTGGCATATATG 57.468 38.462 19.67 8.45 0.00 1.78
120 121 9.196139 GAACTATTCTCTAGAGGTGGCATATAT 57.804 37.037 19.67 3.15 0.00 0.86
121 122 8.170730 TGAACTATTCTCTAGAGGTGGCATATA 58.829 37.037 19.67 5.98 0.00 0.86
122 123 7.013220 TGAACTATTCTCTAGAGGTGGCATAT 58.987 38.462 19.67 5.23 0.00 1.78
123 124 6.373759 TGAACTATTCTCTAGAGGTGGCATA 58.626 40.000 19.67 7.79 0.00 3.14
124 125 5.211973 TGAACTATTCTCTAGAGGTGGCAT 58.788 41.667 19.67 7.11 0.00 4.40
125 126 4.610333 TGAACTATTCTCTAGAGGTGGCA 58.390 43.478 19.67 8.70 0.00 4.92
126 127 5.799827 ATGAACTATTCTCTAGAGGTGGC 57.200 43.478 19.67 6.51 0.00 5.01
127 128 9.535878 GTTTAATGAACTATTCTCTAGAGGTGG 57.464 37.037 19.67 12.69 35.31 4.61
145 146 8.714179 CGGATGTAGTGTAAAACAGTTTAATGA 58.286 33.333 0.00 0.00 33.15 2.57
146 147 7.960738 CCGGATGTAGTGTAAAACAGTTTAATG 59.039 37.037 0.00 0.00 33.15 1.90
147 148 7.120138 CCCGGATGTAGTGTAAAACAGTTTAAT 59.880 37.037 0.73 0.00 33.15 1.40
148 149 6.427547 CCCGGATGTAGTGTAAAACAGTTTAA 59.572 38.462 0.73 0.00 33.15 1.52
149 150 5.933463 CCCGGATGTAGTGTAAAACAGTTTA 59.067 40.000 0.73 0.00 33.15 2.01
150 151 4.758165 CCCGGATGTAGTGTAAAACAGTTT 59.242 41.667 0.73 0.00 33.15 2.66
151 152 4.320870 CCCGGATGTAGTGTAAAACAGTT 58.679 43.478 0.73 0.00 33.15 3.16
152 153 3.867216 GCCCGGATGTAGTGTAAAACAGT 60.867 47.826 0.73 0.00 35.61 3.55
153 154 2.676342 GCCCGGATGTAGTGTAAAACAG 59.324 50.000 0.73 0.00 0.00 3.16
154 155 2.038689 TGCCCGGATGTAGTGTAAAACA 59.961 45.455 0.73 0.00 0.00 2.83
155 156 2.676342 CTGCCCGGATGTAGTGTAAAAC 59.324 50.000 0.73 0.00 0.00 2.43
156 157 2.355310 CCTGCCCGGATGTAGTGTAAAA 60.355 50.000 0.73 0.00 33.16 1.52
157 158 1.208535 CCTGCCCGGATGTAGTGTAAA 59.791 52.381 0.73 0.00 33.16 2.01
158 159 0.828022 CCTGCCCGGATGTAGTGTAA 59.172 55.000 0.73 0.00 33.16 2.41
159 160 1.046472 CCCTGCCCGGATGTAGTGTA 61.046 60.000 0.73 0.00 33.16 2.90
160 161 2.367202 CCCTGCCCGGATGTAGTGT 61.367 63.158 0.73 0.00 33.16 3.55
161 162 2.505982 CCCTGCCCGGATGTAGTG 59.494 66.667 0.73 0.00 33.16 2.74
162 163 3.480133 GCCCTGCCCGGATGTAGT 61.480 66.667 0.73 0.00 33.16 2.73
163 164 3.164269 AGCCCTGCCCGGATGTAG 61.164 66.667 0.73 0.00 33.16 2.74
164 165 3.161450 GAGCCCTGCCCGGATGTA 61.161 66.667 0.73 0.00 33.16 2.29
166 167 4.559063 CTGAGCCCTGCCCGGATG 62.559 72.222 0.73 0.00 33.16 3.51
167 168 4.804420 TCTGAGCCCTGCCCGGAT 62.804 66.667 0.73 0.00 33.16 4.18
169 170 4.479993 CTTCTGAGCCCTGCCCGG 62.480 72.222 0.00 0.00 0.00 5.73
170 171 2.303549 CTACTTCTGAGCCCTGCCCG 62.304 65.000 0.00 0.00 0.00 6.13
171 172 1.524482 CTACTTCTGAGCCCTGCCC 59.476 63.158 0.00 0.00 0.00 5.36
172 173 1.153269 GCTACTTCTGAGCCCTGCC 60.153 63.158 0.00 0.00 33.60 4.85
173 174 4.530581 GCTACTTCTGAGCCCTGC 57.469 61.111 0.00 0.00 33.60 4.85
178 179 2.035832 GAGAGATGGGCTACTTCTGAGC 59.964 54.545 2.94 0.00 39.33 4.26
179 180 3.068024 GTGAGAGATGGGCTACTTCTGAG 59.932 52.174 2.94 0.00 34.07 3.35
180 181 3.027412 GTGAGAGATGGGCTACTTCTGA 58.973 50.000 2.94 0.00 34.07 3.27
181 182 2.762887 TGTGAGAGATGGGCTACTTCTG 59.237 50.000 2.94 0.00 34.07 3.02
182 183 3.107402 TGTGAGAGATGGGCTACTTCT 57.893 47.619 0.00 0.00 36.39 2.85
183 184 3.386078 TCATGTGAGAGATGGGCTACTTC 59.614 47.826 0.00 0.00 0.00 3.01
184 185 3.378512 TCATGTGAGAGATGGGCTACTT 58.621 45.455 0.00 0.00 0.00 2.24
185 186 3.037851 TCATGTGAGAGATGGGCTACT 57.962 47.619 0.00 0.00 0.00 2.57
186 187 3.827008 TTCATGTGAGAGATGGGCTAC 57.173 47.619 0.00 0.00 0.00 3.58
187 188 4.842531 TTTTCATGTGAGAGATGGGCTA 57.157 40.909 0.00 0.00 0.00 3.93
188 189 3.726557 TTTTCATGTGAGAGATGGGCT 57.273 42.857 0.00 0.00 0.00 5.19
189 190 3.317430 GGATTTTCATGTGAGAGATGGGC 59.683 47.826 0.00 0.00 0.00 5.36
190 191 4.789807 AGGATTTTCATGTGAGAGATGGG 58.210 43.478 0.00 0.00 0.00 4.00
191 192 6.351711 TGTAGGATTTTCATGTGAGAGATGG 58.648 40.000 0.00 0.00 0.00 3.51
192 193 7.854557 TTGTAGGATTTTCATGTGAGAGATG 57.145 36.000 0.00 0.00 0.00 2.90
193 194 8.868522 TTTTGTAGGATTTTCATGTGAGAGAT 57.131 30.769 0.00 0.00 0.00 2.75
194 195 8.868522 ATTTTGTAGGATTTTCATGTGAGAGA 57.131 30.769 0.00 0.00 0.00 3.10
196 197 9.958180 TCTATTTTGTAGGATTTTCATGTGAGA 57.042 29.630 0.00 0.00 0.00 3.27
219 220 9.462606 TGATAGCGATCATCTAGGTTATTTCTA 57.537 33.333 5.29 0.00 37.15 2.10
220 221 8.247562 GTGATAGCGATCATCTAGGTTATTTCT 58.752 37.037 12.87 0.00 43.95 2.52
221 222 8.029522 TGTGATAGCGATCATCTAGGTTATTTC 58.970 37.037 12.87 0.00 43.95 2.17
222 223 7.896811 TGTGATAGCGATCATCTAGGTTATTT 58.103 34.615 12.87 0.00 43.95 1.40
223 224 7.468141 TGTGATAGCGATCATCTAGGTTATT 57.532 36.000 12.87 0.00 43.95 1.40
224 225 7.652524 ATGTGATAGCGATCATCTAGGTTAT 57.347 36.000 12.87 0.00 43.95 1.89
225 226 7.468141 AATGTGATAGCGATCATCTAGGTTA 57.532 36.000 12.87 0.00 43.95 2.85
226 227 5.991933 ATGTGATAGCGATCATCTAGGTT 57.008 39.130 12.87 0.00 43.95 3.50
227 228 5.991933 AATGTGATAGCGATCATCTAGGT 57.008 39.130 12.87 0.00 43.95 3.08
228 229 6.629128 AGAAATGTGATAGCGATCATCTAGG 58.371 40.000 12.87 0.00 43.95 3.02
229 230 7.311408 TGAGAAATGTGATAGCGATCATCTAG 58.689 38.462 12.87 0.00 43.95 2.43
230 231 7.219484 TGAGAAATGTGATAGCGATCATCTA 57.781 36.000 12.87 3.67 43.95 1.98
231 232 6.094193 TGAGAAATGTGATAGCGATCATCT 57.906 37.500 12.87 11.00 43.95 2.90
232 233 6.964741 ATGAGAAATGTGATAGCGATCATC 57.035 37.500 12.87 6.43 43.95 2.92
233 234 6.815641 GGTATGAGAAATGTGATAGCGATCAT 59.184 38.462 12.87 0.00 43.95 2.45
234 235 6.159293 GGTATGAGAAATGTGATAGCGATCA 58.841 40.000 5.29 5.29 39.88 2.92
235 236 6.159293 TGGTATGAGAAATGTGATAGCGATC 58.841 40.000 0.00 0.00 0.00 3.69
236 237 6.101650 TGGTATGAGAAATGTGATAGCGAT 57.898 37.500 0.00 0.00 0.00 4.58
237 238 5.529581 TGGTATGAGAAATGTGATAGCGA 57.470 39.130 0.00 0.00 0.00 4.93
238 239 6.791887 AATGGTATGAGAAATGTGATAGCG 57.208 37.500 0.00 0.00 0.00 4.26
239 240 8.408601 ACAAAATGGTATGAGAAATGTGATAGC 58.591 33.333 0.00 0.00 0.00 2.97
244 245 8.810427 GCAATACAAAATGGTATGAGAAATGTG 58.190 33.333 0.00 0.00 34.32 3.21
245 246 7.701924 CGCAATACAAAATGGTATGAGAAATGT 59.298 33.333 0.00 0.00 34.32 2.71
246 247 7.306167 GCGCAATACAAAATGGTATGAGAAATG 60.306 37.037 0.30 0.00 34.32 2.32
247 248 6.697019 GCGCAATACAAAATGGTATGAGAAAT 59.303 34.615 0.30 0.00 34.32 2.17
248 249 6.033341 GCGCAATACAAAATGGTATGAGAAA 58.967 36.000 0.30 0.00 34.32 2.52
249 250 5.124617 TGCGCAATACAAAATGGTATGAGAA 59.875 36.000 8.16 0.00 34.32 2.87
250 251 4.637977 TGCGCAATACAAAATGGTATGAGA 59.362 37.500 8.16 0.00 34.32 3.27
251 252 4.919206 TGCGCAATACAAAATGGTATGAG 58.081 39.130 8.16 0.00 34.32 2.90
252 253 4.972514 TGCGCAATACAAAATGGTATGA 57.027 36.364 8.16 0.00 34.32 2.15
253 254 4.084952 GCATGCGCAATACAAAATGGTATG 60.085 41.667 17.11 3.46 38.36 2.39
254 255 4.050553 GCATGCGCAATACAAAATGGTAT 58.949 39.130 17.11 0.00 38.36 2.73
255 256 3.130164 AGCATGCGCAATACAAAATGGTA 59.870 39.130 17.11 0.00 42.27 3.25
256 257 2.094078 AGCATGCGCAATACAAAATGGT 60.094 40.909 17.11 8.41 42.27 3.55
257 258 2.542597 AGCATGCGCAATACAAAATGG 58.457 42.857 17.11 0.00 42.27 3.16
258 259 5.893512 AATAGCATGCGCAATACAAAATG 57.106 34.783 17.11 6.59 42.27 2.32
259 260 5.811613 ACAAATAGCATGCGCAATACAAAAT 59.188 32.000 17.11 0.00 42.27 1.82
260 261 5.167121 ACAAATAGCATGCGCAATACAAAA 58.833 33.333 17.11 0.00 42.27 2.44
261 262 4.742417 ACAAATAGCATGCGCAATACAAA 58.258 34.783 17.11 0.00 42.27 2.83
262 263 4.368874 ACAAATAGCATGCGCAATACAA 57.631 36.364 17.11 0.00 42.27 2.41
263 264 4.104066 CAACAAATAGCATGCGCAATACA 58.896 39.130 17.11 0.00 42.27 2.29
264 265 4.104776 ACAACAAATAGCATGCGCAATAC 58.895 39.130 17.11 6.91 42.27 1.89
265 266 4.368874 ACAACAAATAGCATGCGCAATA 57.631 36.364 17.11 8.64 42.27 1.90
266 267 3.235157 ACAACAAATAGCATGCGCAAT 57.765 38.095 17.11 6.23 42.27 3.56
267 268 2.721274 ACAACAAATAGCATGCGCAA 57.279 40.000 17.11 0.00 42.27 4.85
268 269 2.721274 AACAACAAATAGCATGCGCA 57.279 40.000 14.96 14.96 42.27 6.09
269 270 2.345341 GGAAACAACAAATAGCATGCGC 59.655 45.455 13.01 0.00 38.99 6.09
270 271 3.573598 TGGAAACAACAAATAGCATGCG 58.426 40.909 13.01 0.00 37.44 4.73
364 365 2.256117 AGAGGTTTTGACAAGGACCG 57.744 50.000 13.86 0.00 37.26 4.79
395 396 9.778741 AGACTGAGAACAATCATTTACAGTTAA 57.221 29.630 0.00 0.00 37.45 2.01
398 399 6.148480 GCAGACTGAGAACAATCATTTACAGT 59.852 38.462 6.65 0.00 39.50 3.55
399 400 6.370994 AGCAGACTGAGAACAATCATTTACAG 59.629 38.462 6.65 0.00 0.00 2.74
418 419 1.881973 TCCAGCATGTTGAAAGCAGAC 59.118 47.619 11.60 0.00 0.00 3.51
472 473 1.889545 AGTGAGTGCTCCAAGCTTTC 58.110 50.000 0.00 0.00 42.97 2.62
507 508 5.104610 TGGAGAGAATTTTCCTGATCAGAGG 60.105 44.000 24.62 9.57 34.48 3.69
515 516 4.460731 GGGAAAGTGGAGAGAATTTTCCTG 59.539 45.833 12.44 0.00 43.87 3.86
520 550 3.140144 TGGTGGGAAAGTGGAGAGAATTT 59.860 43.478 0.00 0.00 0.00 1.82
538 568 4.754618 ACAATGTATGTACTGTGTGTGGTG 59.245 41.667 0.00 0.00 41.63 4.17
539 569 4.754618 CACAATGTATGTACTGTGTGTGGT 59.245 41.667 13.78 0.00 41.46 4.16
540 570 5.281693 CACAATGTATGTACTGTGTGTGG 57.718 43.478 13.78 0.00 41.46 4.17
556 586 8.438513 CCTTAGCATATAGATCGAAACACAATG 58.561 37.037 0.00 0.00 0.00 2.82
575 738 2.034066 GCACTGCCCACCTTAGCA 59.966 61.111 0.00 0.00 37.46 3.49
577 740 1.078143 GGAGCACTGCCCACCTTAG 60.078 63.158 0.00 0.00 0.00 2.18
579 742 2.766925 TTGGAGCACTGCCCACCTT 61.767 57.895 9.93 0.00 30.91 3.50
580 743 3.177884 TTGGAGCACTGCCCACCT 61.178 61.111 9.93 0.00 30.91 4.00
601 764 6.366340 AGGAAATCTACAGTAGCTAGCAGTA 58.634 40.000 18.83 12.43 0.00 2.74
602 765 5.205056 AGGAAATCTACAGTAGCTAGCAGT 58.795 41.667 18.83 11.94 0.00 4.40
603 766 5.782893 AGGAAATCTACAGTAGCTAGCAG 57.217 43.478 18.83 4.17 0.00 4.24
604 767 6.605995 TGTTAGGAAATCTACAGTAGCTAGCA 59.394 38.462 18.83 4.14 0.00 3.49
605 768 7.040473 TGTTAGGAAATCTACAGTAGCTAGC 57.960 40.000 6.62 6.62 0.00 3.42
606 769 8.467598 TGTTGTTAGGAAATCTACAGTAGCTAG 58.532 37.037 2.26 0.00 0.00 3.42
607 770 8.357290 TGTTGTTAGGAAATCTACAGTAGCTA 57.643 34.615 2.26 0.00 0.00 3.32
608 771 7.241042 TGTTGTTAGGAAATCTACAGTAGCT 57.759 36.000 2.26 0.00 0.00 3.32
609 772 8.494016 AATGTTGTTAGGAAATCTACAGTAGC 57.506 34.615 2.26 0.00 0.00 3.58
611 774 8.726988 GCAAATGTTGTTAGGAAATCTACAGTA 58.273 33.333 0.00 0.00 0.00 2.74
614 777 7.013750 TGTGCAAATGTTGTTAGGAAATCTACA 59.986 33.333 0.00 0.00 0.00 2.74
619 782 5.296748 GGTGTGCAAATGTTGTTAGGAAAT 58.703 37.500 0.00 0.00 0.00 2.17
627 790 3.068024 AGAATTCGGTGTGCAAATGTTGT 59.932 39.130 0.00 0.00 0.00 3.32
642 805 6.517714 CAGATGACGAGTTTTCAAAGAATTCG 59.482 38.462 0.00 0.00 40.59 3.34
643 806 6.304208 GCAGATGACGAGTTTTCAAAGAATTC 59.696 38.462 0.00 0.00 0.00 2.17
648 812 4.472691 TGCAGATGACGAGTTTTCAAAG 57.527 40.909 0.00 0.00 0.00 2.77
686 850 9.511144 GTTTAGGTTAATTATTAAGCGTTGCAT 57.489 29.630 17.55 5.61 45.58 3.96
687 851 8.512956 TGTTTAGGTTAATTATTAAGCGTTGCA 58.487 29.630 17.55 13.57 45.58 4.08
689 853 8.991810 CGTGTTTAGGTTAATTATTAAGCGTTG 58.008 33.333 17.55 5.21 45.58 4.10
690 854 8.720562 ACGTGTTTAGGTTAATTATTAAGCGTT 58.279 29.630 17.55 7.34 45.58 4.84
691 855 8.255394 ACGTGTTTAGGTTAATTATTAAGCGT 57.745 30.769 17.55 10.78 45.58 5.07
702 937 8.430801 TTTAGTAGCAAACGTGTTTAGGTTAA 57.569 30.769 0.00 0.00 34.08 2.01
716 951 1.989586 TCTGGCCCCTTTAGTAGCAAA 59.010 47.619 0.00 0.00 0.00 3.68
719 954 2.487445 GGAATCTGGCCCCTTTAGTAGC 60.487 54.545 0.00 0.00 0.00 3.58
723 958 0.926293 TGGGAATCTGGCCCCTTTAG 59.074 55.000 0.00 0.00 45.40 1.85
724 959 1.217689 CATGGGAATCTGGCCCCTTTA 59.782 52.381 0.00 0.00 45.40 1.85
725 960 0.031817 CATGGGAATCTGGCCCCTTT 60.032 55.000 0.00 0.00 45.40 3.11
730 965 1.152673 GGGACATGGGAATCTGGCC 60.153 63.158 0.00 0.00 40.07 5.36
733 968 2.104451 CAGAGAGGGACATGGGAATCTG 59.896 54.545 0.00 0.00 0.00 2.90
741 976 3.025322 AGGAGTACAGAGAGGGACATG 57.975 52.381 0.00 0.00 0.00 3.21
742 977 3.767309 AAGGAGTACAGAGAGGGACAT 57.233 47.619 0.00 0.00 0.00 3.06
765 1000 7.500227 AGCACAATGATATACATGCACTACTTT 59.500 33.333 0.00 0.00 39.39 2.66
766 1001 6.994496 AGCACAATGATATACATGCACTACTT 59.006 34.615 0.00 0.00 39.39 2.24
768 1003 6.791887 AGCACAATGATATACATGCACTAC 57.208 37.500 0.00 0.00 39.39 2.73
769 1004 6.991531 TCAAGCACAATGATATACATGCACTA 59.008 34.615 0.00 0.00 39.39 2.74
789 1029 5.101628 GTCGATATCATGAGAGGATCAAGC 58.898 45.833 0.09 0.00 42.53 4.01
798 1038 4.460731 GTCCTCCATGTCGATATCATGAGA 59.539 45.833 14.27 0.00 43.47 3.27
806 1046 3.937539 TGGGTCCTCCATGTCGATA 57.062 52.632 0.00 0.00 41.46 2.92
828 1068 0.250295 TAGGTGGGAATAGCATGCGC 60.250 55.000 13.01 0.00 38.99 6.09
830 1070 5.393461 GCAATAATAGGTGGGAATAGCATGC 60.393 44.000 10.51 10.51 0.00 4.06
836 1076 5.952387 AGCAAGCAATAATAGGTGGGAATA 58.048 37.500 0.00 0.00 0.00 1.75
861 1101 2.496871 CAAGGAATAATTGGGTGCTGCA 59.503 45.455 0.00 0.00 0.00 4.41
878 1118 2.169561 GAGGTAGAGGAAAGGAGCAAGG 59.830 54.545 0.00 0.00 0.00 3.61
895 1135 2.610859 AAGTGGCCCGATGGAGGT 60.611 61.111 0.00 0.00 0.00 3.85
904 1144 1.201429 TGGAGAAGGAGAAGTGGCCC 61.201 60.000 0.00 0.00 0.00 5.80
926 1166 1.302752 TCATGTGTGCTGCTGGGAC 60.303 57.895 0.00 0.00 36.78 4.46
948 1197 1.423395 CTCGTCTCTCTTGTTGGTGC 58.577 55.000 0.00 0.00 0.00 5.01
956 1205 5.106317 GCTAGCTATTATGCTCGTCTCTCTT 60.106 44.000 7.70 0.00 42.97 2.85
1111 1361 1.765314 GAGCTCAGCTTGGAGGGATAA 59.235 52.381 9.40 0.00 39.88 1.75
1113 1363 0.619832 TGAGCTCAGCTTGGAGGGAT 60.620 55.000 13.74 0.00 39.88 3.85
1154 1404 4.870991 GGTCTTCTAGCATGGTGTAGTTTC 59.129 45.833 7.89 0.00 0.00 2.78
1299 1549 4.436998 GTGGTGTCGCGGAGGAGG 62.437 72.222 6.13 0.00 0.00 4.30
1392 1642 2.005451 CAATCCTTGAGCTCCTTGACG 58.995 52.381 12.15 0.00 0.00 4.35
1434 1684 1.268899 GCATGCTCAGTCTTGTTGCTT 59.731 47.619 11.37 0.00 0.00 3.91
1435 1685 0.879765 GCATGCTCAGTCTTGTTGCT 59.120 50.000 11.37 0.00 0.00 3.91
1439 1689 0.959372 GCCTGCATGCTCAGTCTTGT 60.959 55.000 20.33 0.00 32.32 3.16
1486 1736 2.203788 AAGGTGTGCCTCCTCGGA 60.204 61.111 0.00 0.00 46.33 4.55
1878 2164 7.712797 ACCAGTAACTACCAAAATTTGTGAAG 58.287 34.615 4.92 1.99 0.00 3.02
1914 2201 6.795098 TCACGTGAAAAATATAACTGTGCT 57.205 33.333 17.62 0.00 0.00 4.40
1916 2203 9.658475 TTTCTTCACGTGAAAAATATAACTGTG 57.342 29.630 29.32 14.28 33.07 3.66
2092 3113 8.515414 AGTGGAACATACTTCTTGCTTATTTTC 58.485 33.333 0.00 0.00 44.52 2.29
2139 3167 2.483583 TGCAACGACGCAAATTCTTT 57.516 40.000 0.00 0.00 39.45 2.52
2143 3171 2.132740 AACATGCAACGACGCAAATT 57.867 40.000 7.54 3.14 46.87 1.82
2404 3501 7.538303 TTCTTTTGAGAAACAATCTTTTGGC 57.462 32.000 0.00 0.00 38.96 4.52
2496 3594 2.203209 GCCAATGGTAGGCCTCCG 60.203 66.667 9.68 0.00 46.50 4.63
2802 3900 8.856153 TGATAAGCTCGTAGAAATATCTCTCT 57.144 34.615 0.00 0.00 37.10 3.10
2853 3951 0.886490 CCTTGCCATCATAGCCGACC 60.886 60.000 0.00 0.00 0.00 4.79
2966 4064 2.351738 CCTTGACGATTTGCCAAACTCC 60.352 50.000 0.00 0.00 0.00 3.85
3034 4132 4.642429 AGGTCTTCTTGTGCGAGTAAATT 58.358 39.130 0.00 0.00 0.00 1.82
3054 4152 3.068732 TCAGAGATCGAACATGGCTTAGG 59.931 47.826 0.00 0.00 0.00 2.69
3185 4283 5.876460 AGTTGGAGCAATTTGCCAATATTTC 59.124 36.000 17.51 6.85 46.52 2.17
3656 4791 6.546428 ACTTTCCTGAAATAGTAGCTGCTA 57.454 37.500 14.25 14.25 0.00 3.49
3705 4840 2.290323 TGTCTAGGAAAGAAAGGCTGGC 60.290 50.000 0.00 0.00 35.47 4.85
3813 4948 4.031611 ACTGTAACCCTATCTTCTGGTCC 58.968 47.826 0.00 0.00 0.00 4.46
3849 4990 1.478105 GATGCCAAACCCATTCAGACC 59.522 52.381 0.00 0.00 0.00 3.85
3857 4998 9.953565 GTATAATTACTATAGATGCCAAACCCA 57.046 33.333 6.78 0.00 0.00 4.51
3858 4999 9.095065 CGTATAATTACTATAGATGCCAAACCC 57.905 37.037 6.78 0.00 0.00 4.11
3859 5000 9.649167 ACGTATAATTACTATAGATGCCAAACC 57.351 33.333 6.78 0.00 0.00 3.27
3889 5030 4.938832 CCCCTTTGACAAATGTGACGTATA 59.061 41.667 0.05 0.00 0.00 1.47
3989 5130 2.884827 TGAAGACATGTGAGATGCTCG 58.115 47.619 1.15 0.00 32.35 5.03
4097 5238 0.394216 CTGCGGGATGGTTTGGATGA 60.394 55.000 0.00 0.00 0.00 2.92
4131 5272 5.465390 TGTCCTTTTCAGAACACTCGTATTG 59.535 40.000 0.00 0.00 0.00 1.90
4173 5314 5.409643 TCTTCGTTGCTCTTTTTCTCTTG 57.590 39.130 0.00 0.00 0.00 3.02
4175 5316 4.453819 CCATCTTCGTTGCTCTTTTTCTCT 59.546 41.667 0.00 0.00 0.00 3.10
4244 5385 1.467734 CTCTTGCAGTTGGTGATGAGC 59.532 52.381 0.00 0.00 0.00 4.26
4331 5472 6.556495 ACATCATCCTATATATCGGCTCCAAT 59.444 38.462 0.00 0.00 0.00 3.16
4337 5478 3.983988 CGCACATCATCCTATATATCGGC 59.016 47.826 0.00 0.00 0.00 5.54
4338 5479 4.038042 ACCGCACATCATCCTATATATCGG 59.962 45.833 0.00 0.00 38.09 4.18
4397 5557 4.675063 TCTTATTTCCAGGCCTTCCTTT 57.325 40.909 0.00 0.00 41.93 3.11
4410 5570 4.333926 CACCCTGCTACAGCTTCTTATTTC 59.666 45.833 2.44 0.00 42.66 2.17
4424 5584 1.583556 ATGTGACCATCACCCTGCTA 58.416 50.000 6.51 0.00 46.40 3.49
4501 5665 9.301153 GTTGTGCCCTAATAATTATGAAAAGTG 57.699 33.333 0.00 0.00 0.00 3.16
4519 5683 0.398318 AAGACAGAGAGGTTGTGCCC 59.602 55.000 0.00 0.00 38.26 5.36
4521 5685 1.517242 CCAAGACAGAGAGGTTGTGC 58.483 55.000 0.00 0.00 0.00 4.57
4524 5688 2.486472 ATGCCAAGACAGAGAGGTTG 57.514 50.000 0.00 0.00 0.00 3.77
4527 5691 3.008330 CAGAAATGCCAAGACAGAGAGG 58.992 50.000 0.00 0.00 0.00 3.69
4536 5700 6.506500 AGAGTATTCAACAGAAATGCCAAG 57.493 37.500 0.00 0.00 0.00 3.61
4538 5702 6.240894 AGAAGAGTATTCAACAGAAATGCCA 58.759 36.000 0.00 0.00 0.00 4.92
4573 5762 6.569226 GCGAGCAAAGCCAGAATCAATATTAT 60.569 38.462 0.00 0.00 0.00 1.28
4614 5803 3.964031 GGGGTCCCAAATGCAAACATATA 59.036 43.478 10.98 0.00 34.08 0.86
4615 5804 2.771372 GGGGTCCCAAATGCAAACATAT 59.229 45.455 10.98 0.00 34.08 1.78
4656 5845 3.766545 AGGTAAGCAAGAAAGGCAATCA 58.233 40.909 0.00 0.00 0.00 2.57
4657 5846 4.460731 AGAAGGTAAGCAAGAAAGGCAATC 59.539 41.667 0.00 0.00 0.00 2.67
4679 5868 4.676546 TGACTCTTGAGTCATAATCGCAG 58.323 43.478 24.41 0.00 43.09 5.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.