Multiple sequence alignment - TraesCS4A01G326300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G326300 chr4A 100.000 2556 0 0 1 2556 613421860 613424415 0.000000e+00 4721.0
1 TraesCS4A01G326300 chr4A 89.200 1000 54 14 646 1631 613567734 613568693 0.000000e+00 1199.0
2 TraesCS4A01G326300 chr4A 89.488 371 22 6 1638 1991 613568864 613569234 1.080000e-123 453.0
3 TraesCS4A01G326300 chr4A 76.613 372 58 12 1303 1660 613319444 613319088 7.270000e-41 178.0
4 TraesCS4A01G326300 chr5B 91.474 1431 91 13 617 2029 694177125 694178542 0.000000e+00 1938.0
5 TraesCS4A01G326300 chr5B 87.315 1151 96 24 619 1734 694299163 694300298 0.000000e+00 1271.0
6 TraesCS4A01G326300 chr5B 86.787 719 59 14 1057 1741 710335921 710336637 0.000000e+00 769.0
7 TraesCS4A01G326300 chr5B 94.407 447 24 1 1 446 694176645 694177091 0.000000e+00 686.0
8 TraesCS4A01G326300 chr5B 89.823 226 17 3 1772 1991 694302325 694302550 4.160000e-73 285.0
9 TraesCS4A01G326300 chr5B 89.308 159 11 4 1626 1779 694300291 694300448 7.220000e-46 195.0
10 TraesCS4A01G326300 chr5B 84.699 183 19 5 1854 2034 710338041 710338216 9.400000e-40 174.0
11 TraesCS4A01G326300 chr5B 95.833 48 2 0 1807 1854 710337974 710338021 7.580000e-11 78.7
12 TraesCS4A01G326300 chr5D 91.023 1437 92 18 619 2034 556378347 556376927 0.000000e+00 1905.0
13 TraesCS4A01G326300 chr5D 90.119 1174 67 11 607 1741 559901010 559902173 0.000000e+00 1480.0
14 TraesCS4A01G326300 chr5D 94.655 449 20 3 1 446 559900514 559900961 0.000000e+00 693.0
15 TraesCS4A01G326300 chr5D 91.813 171 12 2 2028 2198 488868766 488868598 1.180000e-58 237.0
16 TraesCS4A01G326300 chr5D 91.716 169 12 2 2032 2200 53869701 53869535 1.530000e-57 233.0
17 TraesCS4A01G326300 chr5D 85.393 178 17 5 1854 2029 559902264 559902434 2.610000e-40 176.0
18 TraesCS4A01G326300 chr5D 83.221 149 7 7 2196 2337 559902428 559902565 1.240000e-23 121.0
19 TraesCS4A01G326300 chr5D 95.833 48 2 0 1807 1854 559902197 559902244 7.580000e-11 78.7
20 TraesCS4A01G326300 chr2A 94.643 168 8 1 2028 2195 57828201 57828367 2.520000e-65 259.0
21 TraesCS4A01G326300 chr7A 94.512 164 8 1 2032 2195 547065415 547065577 4.220000e-63 252.0
22 TraesCS4A01G326300 chr3D 92.899 169 10 2 2032 2200 604180845 604180679 7.060000e-61 244.0
23 TraesCS4A01G326300 chr6D 93.333 165 10 1 2032 2196 90890444 90890281 2.540000e-60 243.0
24 TraesCS4A01G326300 chr7D 92.814 167 11 1 2030 2196 638091017 638090852 9.140000e-60 241.0
25 TraesCS4A01G326300 chr6B 92.262 168 11 2 2032 2199 82007531 82007696 1.180000e-58 237.0
26 TraesCS4A01G326300 chr2B 90.805 174 15 1 2030 2203 23018882 23018710 5.500000e-57 231.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G326300 chr4A 613421860 613424415 2555 False 4721.000000 4721 100.000000 1 2556 1 chr4A.!!$F1 2555
1 TraesCS4A01G326300 chr4A 613567734 613569234 1500 False 826.000000 1199 89.344000 646 1991 2 chr4A.!!$F2 1345
2 TraesCS4A01G326300 chr5B 694176645 694178542 1897 False 1312.000000 1938 92.940500 1 2029 2 chr5B.!!$F1 2028
3 TraesCS4A01G326300 chr5B 694299163 694302550 3387 False 583.666667 1271 88.815333 619 1991 3 chr5B.!!$F2 1372
4 TraesCS4A01G326300 chr5B 710335921 710338216 2295 False 340.566667 769 89.106333 1057 2034 3 chr5B.!!$F3 977
5 TraesCS4A01G326300 chr5D 556376927 556378347 1420 True 1905.000000 1905 91.023000 619 2034 1 chr5D.!!$R3 1415
6 TraesCS4A01G326300 chr5D 559900514 559902565 2051 False 509.740000 1480 89.844200 1 2337 5 chr5D.!!$F1 2336

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
540 544 0.895559 GCCAGGCTGCTACCTTTGTT 60.896 55.0 9.56 0.0 38.26 2.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2200 5795 0.037326 TCTTCAGTGGGCATGACGAC 60.037 55.0 5.4 5.4 0.0 4.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
76 77 6.651975 ATTGACTAGTGGTACATAGTAGCC 57.348 41.667 0.00 2.40 44.52 3.93
83 84 3.795826 GTGGTACATAGTAGCCTTCAGCG 60.796 52.174 0.00 0.00 45.74 5.18
334 338 4.337555 AGATAAAGTGCTGCATGTTCATCC 59.662 41.667 5.27 0.00 0.00 3.51
409 413 6.379703 CACCCCCAACTCAATTACAATCATTA 59.620 38.462 0.00 0.00 0.00 1.90
413 417 9.316730 CCCCAACTCAATTACAATCATTATTTG 57.683 33.333 0.00 0.00 0.00 2.32
415 419 9.368674 CCAACTCAATTACAATCATTATTTGCA 57.631 29.630 0.00 0.00 0.00 4.08
474 478 7.962995 TGATCTTAGTAACTCATGAAGTCCT 57.037 36.000 0.00 0.88 37.17 3.85
475 479 9.475620 TTGATCTTAGTAACTCATGAAGTCCTA 57.524 33.333 0.00 0.04 37.17 2.94
476 480 9.475620 TGATCTTAGTAACTCATGAAGTCCTAA 57.524 33.333 0.00 6.93 37.17 2.69
477 481 9.738832 GATCTTAGTAACTCATGAAGTCCTAAC 57.261 37.037 0.00 0.00 37.17 2.34
478 482 8.880991 TCTTAGTAACTCATGAAGTCCTAACT 57.119 34.615 0.00 3.33 37.17 2.24
479 483 8.958506 TCTTAGTAACTCATGAAGTCCTAACTC 58.041 37.037 0.00 0.00 37.17 3.01
480 484 6.532988 AGTAACTCATGAAGTCCTAACTCC 57.467 41.667 0.00 0.00 37.17 3.85
481 485 4.828072 AACTCATGAAGTCCTAACTCCC 57.172 45.455 0.00 0.00 37.17 4.30
482 486 4.067944 ACTCATGAAGTCCTAACTCCCT 57.932 45.455 0.00 0.00 33.48 4.20
483 487 5.208294 ACTCATGAAGTCCTAACTCCCTA 57.792 43.478 0.00 0.00 33.48 3.53
484 488 5.782925 ACTCATGAAGTCCTAACTCCCTAT 58.217 41.667 0.00 0.00 33.48 2.57
485 489 5.836358 ACTCATGAAGTCCTAACTCCCTATC 59.164 44.000 0.00 0.00 33.48 2.08
486 490 6.031964 TCATGAAGTCCTAACTCCCTATCT 57.968 41.667 0.00 0.00 33.48 1.98
487 491 6.444704 TCATGAAGTCCTAACTCCCTATCTT 58.555 40.000 0.00 0.00 33.48 2.40
488 492 7.592736 TCATGAAGTCCTAACTCCCTATCTTA 58.407 38.462 0.00 0.00 33.48 2.10
489 493 8.065627 TCATGAAGTCCTAACTCCCTATCTTAA 58.934 37.037 0.00 0.00 33.48 1.85
490 494 7.657023 TGAAGTCCTAACTCCCTATCTTAAC 57.343 40.000 0.00 0.00 33.48 2.01
491 495 7.420029 TGAAGTCCTAACTCCCTATCTTAACT 58.580 38.462 0.00 0.00 33.48 2.24
492 496 7.560626 TGAAGTCCTAACTCCCTATCTTAACTC 59.439 40.741 0.00 0.00 33.48 3.01
493 497 6.982899 AGTCCTAACTCCCTATCTTAACTCA 58.017 40.000 0.00 0.00 0.00 3.41
494 498 6.834969 AGTCCTAACTCCCTATCTTAACTCAC 59.165 42.308 0.00 0.00 0.00 3.51
495 499 6.606395 GTCCTAACTCCCTATCTTAACTCACA 59.394 42.308 0.00 0.00 0.00 3.58
496 500 7.123847 GTCCTAACTCCCTATCTTAACTCACAA 59.876 40.741 0.00 0.00 0.00 3.33
497 501 7.676893 TCCTAACTCCCTATCTTAACTCACAAA 59.323 37.037 0.00 0.00 0.00 2.83
498 502 8.319146 CCTAACTCCCTATCTTAACTCACAAAA 58.681 37.037 0.00 0.00 0.00 2.44
499 503 7.981102 AACTCCCTATCTTAACTCACAAAAC 57.019 36.000 0.00 0.00 0.00 2.43
500 504 6.473758 ACTCCCTATCTTAACTCACAAAACC 58.526 40.000 0.00 0.00 0.00 3.27
501 505 5.812286 TCCCTATCTTAACTCACAAAACCC 58.188 41.667 0.00 0.00 0.00 4.11
502 506 4.634443 CCCTATCTTAACTCACAAAACCCG 59.366 45.833 0.00 0.00 0.00 5.28
503 507 4.094442 CCTATCTTAACTCACAAAACCCGC 59.906 45.833 0.00 0.00 0.00 6.13
504 508 2.920524 TCTTAACTCACAAAACCCGCA 58.079 42.857 0.00 0.00 0.00 5.69
505 509 3.482436 TCTTAACTCACAAAACCCGCAT 58.518 40.909 0.00 0.00 0.00 4.73
506 510 4.643463 TCTTAACTCACAAAACCCGCATA 58.357 39.130 0.00 0.00 0.00 3.14
507 511 5.250200 TCTTAACTCACAAAACCCGCATAT 58.750 37.500 0.00 0.00 0.00 1.78
508 512 3.848272 AACTCACAAAACCCGCATATG 57.152 42.857 0.00 0.00 0.00 1.78
509 513 2.091541 ACTCACAAAACCCGCATATGG 58.908 47.619 4.56 0.00 0.00 2.74
515 519 2.038387 AAACCCGCATATGGAGTGTC 57.962 50.000 4.56 0.00 0.00 3.67
525 529 2.887568 GGAGTGTCGCATCGCCAG 60.888 66.667 0.00 0.00 0.00 4.85
526 530 2.887568 GAGTGTCGCATCGCCAGG 60.888 66.667 0.00 0.00 0.00 4.45
533 537 3.275338 GCATCGCCAGGCTGCTAC 61.275 66.667 16.73 0.00 33.15 3.58
538 542 2.401766 CGCCAGGCTGCTACCTTTG 61.402 63.158 10.54 0.00 38.26 2.77
540 544 0.895559 GCCAGGCTGCTACCTTTGTT 60.896 55.000 9.56 0.00 38.26 2.83
541 545 1.620822 CCAGGCTGCTACCTTTGTTT 58.379 50.000 9.56 0.00 38.26 2.83
542 546 1.963515 CCAGGCTGCTACCTTTGTTTT 59.036 47.619 9.56 0.00 38.26 2.43
543 547 2.365293 CCAGGCTGCTACCTTTGTTTTT 59.635 45.455 9.56 0.00 38.26 1.94
544 548 3.572255 CCAGGCTGCTACCTTTGTTTTTA 59.428 43.478 9.56 0.00 38.26 1.52
545 549 4.038642 CCAGGCTGCTACCTTTGTTTTTAA 59.961 41.667 9.56 0.00 38.26 1.52
546 550 5.222631 CAGGCTGCTACCTTTGTTTTTAAG 58.777 41.667 0.00 0.00 38.26 1.85
547 551 3.987868 GGCTGCTACCTTTGTTTTTAAGC 59.012 43.478 0.00 0.00 0.00 3.09
548 552 4.262036 GGCTGCTACCTTTGTTTTTAAGCT 60.262 41.667 0.00 0.00 0.00 3.74
549 553 4.681483 GCTGCTACCTTTGTTTTTAAGCTG 59.319 41.667 0.00 0.00 0.00 4.24
550 554 5.507315 GCTGCTACCTTTGTTTTTAAGCTGA 60.507 40.000 0.00 0.00 31.49 4.26
551 555 6.458232 TGCTACCTTTGTTTTTAAGCTGAA 57.542 33.333 0.00 0.00 0.00 3.02
552 556 6.270064 TGCTACCTTTGTTTTTAAGCTGAAC 58.730 36.000 0.00 0.00 0.00 3.18
553 557 6.096282 TGCTACCTTTGTTTTTAAGCTGAACT 59.904 34.615 0.00 0.00 0.00 3.01
554 558 6.978659 GCTACCTTTGTTTTTAAGCTGAACTT 59.021 34.615 0.00 0.00 42.76 2.66
555 559 7.043391 GCTACCTTTGTTTTTAAGCTGAACTTG 60.043 37.037 0.00 0.00 39.58 3.16
556 560 6.697395 ACCTTTGTTTTTAAGCTGAACTTGT 58.303 32.000 0.00 0.00 39.58 3.16
557 561 7.158697 ACCTTTGTTTTTAAGCTGAACTTGTT 58.841 30.769 0.00 0.00 39.58 2.83
558 562 8.308207 ACCTTTGTTTTTAAGCTGAACTTGTTA 58.692 29.630 0.00 0.00 39.58 2.41
559 563 8.592155 CCTTTGTTTTTAAGCTGAACTTGTTAC 58.408 33.333 0.00 0.00 39.58 2.50
560 564 8.468720 TTTGTTTTTAAGCTGAACTTGTTACC 57.531 30.769 0.00 0.00 39.58 2.85
561 565 7.399245 TGTTTTTAAGCTGAACTTGTTACCT 57.601 32.000 0.00 0.00 39.58 3.08
562 566 7.254852 TGTTTTTAAGCTGAACTTGTTACCTG 58.745 34.615 0.00 0.00 39.58 4.00
563 567 5.432885 TTTAAGCTGAACTTGTTACCTGC 57.567 39.130 0.00 0.00 39.58 4.85
564 568 2.938956 AGCTGAACTTGTTACCTGCT 57.061 45.000 0.00 0.00 0.00 4.24
565 569 4.351874 AAGCTGAACTTGTTACCTGCTA 57.648 40.909 0.00 0.00 37.17 3.49
566 570 4.559862 AGCTGAACTTGTTACCTGCTAT 57.440 40.909 0.00 0.00 33.17 2.97
567 571 5.677319 AGCTGAACTTGTTACCTGCTATA 57.323 39.130 0.00 0.00 33.17 1.31
568 572 5.420409 AGCTGAACTTGTTACCTGCTATAC 58.580 41.667 0.00 0.00 33.17 1.47
569 573 4.571176 GCTGAACTTGTTACCTGCTATACC 59.429 45.833 0.00 0.00 0.00 2.73
570 574 5.627040 GCTGAACTTGTTACCTGCTATACCT 60.627 44.000 0.00 0.00 0.00 3.08
571 575 6.368779 TGAACTTGTTACCTGCTATACCTT 57.631 37.500 0.00 0.00 0.00 3.50
572 576 6.775708 TGAACTTGTTACCTGCTATACCTTT 58.224 36.000 0.00 0.00 0.00 3.11
573 577 7.228590 TGAACTTGTTACCTGCTATACCTTTT 58.771 34.615 0.00 0.00 0.00 2.27
574 578 7.174253 TGAACTTGTTACCTGCTATACCTTTTG 59.826 37.037 0.00 0.00 0.00 2.44
575 579 6.775708 ACTTGTTACCTGCTATACCTTTTGA 58.224 36.000 0.00 0.00 0.00 2.69
578 582 8.644374 TTGTTACCTGCTATACCTTTTGAATT 57.356 30.769 0.00 0.00 0.00 2.17
589 593 7.951347 ATACCTTTTGAATTCAGAAGCTCAT 57.049 32.000 25.88 17.19 36.92 2.90
595 599 3.688185 TGAATTCAGAAGCTCATGCACTC 59.312 43.478 3.38 0.00 42.74 3.51
600 604 2.753452 CAGAAGCTCATGCACTCCATTT 59.247 45.455 0.00 0.00 42.74 2.32
602 606 2.502142 AGCTCATGCACTCCATTTCA 57.498 45.000 0.00 0.00 42.74 2.69
603 607 3.014304 AGCTCATGCACTCCATTTCAT 57.986 42.857 0.00 0.00 42.74 2.57
604 608 3.362706 AGCTCATGCACTCCATTTCATT 58.637 40.909 0.00 0.00 42.74 2.57
605 609 3.767673 AGCTCATGCACTCCATTTCATTT 59.232 39.130 0.00 0.00 42.74 2.32
606 610 4.110482 GCTCATGCACTCCATTTCATTTC 58.890 43.478 0.00 0.00 39.41 2.17
607 611 4.381185 GCTCATGCACTCCATTTCATTTCA 60.381 41.667 0.00 0.00 39.41 2.69
608 612 5.063180 TCATGCACTCCATTTCATTTCAC 57.937 39.130 0.00 0.00 29.71 3.18
609 613 4.768448 TCATGCACTCCATTTCATTTCACT 59.232 37.500 0.00 0.00 29.71 3.41
610 614 5.244402 TCATGCACTCCATTTCATTTCACTT 59.756 36.000 0.00 0.00 29.71 3.16
611 615 5.125100 TGCACTCCATTTCATTTCACTTC 57.875 39.130 0.00 0.00 0.00 3.01
612 616 4.161333 GCACTCCATTTCATTTCACTTCG 58.839 43.478 0.00 0.00 0.00 3.79
613 617 4.320494 GCACTCCATTTCATTTCACTTCGT 60.320 41.667 0.00 0.00 0.00 3.85
614 618 5.762045 CACTCCATTTCATTTCACTTCGTT 58.238 37.500 0.00 0.00 0.00 3.85
615 619 6.208644 CACTCCATTTCATTTCACTTCGTTT 58.791 36.000 0.00 0.00 0.00 3.60
616 620 6.360681 CACTCCATTTCATTTCACTTCGTTTC 59.639 38.462 0.00 0.00 0.00 2.78
617 621 5.768317 TCCATTTCATTTCACTTCGTTTCC 58.232 37.500 0.00 0.00 0.00 3.13
626 630 7.444183 TCATTTCACTTCGTTTCCTGTAAATCT 59.556 33.333 0.00 0.00 0.00 2.40
627 631 8.717821 CATTTCACTTCGTTTCCTGTAAATCTA 58.282 33.333 0.00 0.00 0.00 1.98
772 780 5.178061 CAGCTTCTTTTTGTTGGAAAAGGT 58.822 37.500 9.45 0.00 43.49 3.50
789 797 1.676678 GGTAGGCGGTGAGATCAGCA 61.677 60.000 12.11 0.00 44.00 4.41
792 800 1.953138 GGCGGTGAGATCAGCATCG 60.953 63.158 14.60 14.60 44.00 3.84
1072 1094 2.537560 CCGATGGCGCATTCCTCAC 61.538 63.158 10.83 0.00 35.83 3.51
1155 1177 1.539929 GGCATCTTCTCGTGCTGCTAT 60.540 52.381 0.00 0.00 41.04 2.97
1218 1240 2.614969 ATGCTCCAGGAAGGCCCA 60.615 61.111 0.00 0.00 37.41 5.36
1302 1379 6.228273 GCAGCAAGCGATATATCTGTTTAA 57.772 37.500 10.93 0.00 0.00 1.52
1356 1436 7.663081 TGGAATATCATCTATCTCTTGCAAACC 59.337 37.037 0.00 0.00 0.00 3.27
1441 1521 2.045708 GTTGCCCGTGATCATGCCA 61.046 57.895 9.58 5.97 0.00 4.92
1687 1964 7.432869 ACTAGCATGCATTTTGACAGTTTTTA 58.567 30.769 21.98 0.00 0.00 1.52
1700 1982 5.596772 TGACAGTTTTTAAGAAAAGAGGGGG 59.403 40.000 0.00 0.00 35.53 5.40
1787 5351 8.726988 GGTGTCAACAAACTAGCTGAATATTTA 58.273 33.333 0.00 0.00 0.00 1.40
1936 5524 3.950397 TGTTGGTGTCTGTTCTTTCTGT 58.050 40.909 0.00 0.00 0.00 3.41
1944 5532 4.876107 TGTCTGTTCTTTCTGTGAGGTTTC 59.124 41.667 0.00 0.00 0.00 2.78
1963 5558 6.892456 AGGTTTCTGAAAAGGAAAAAGAGAGT 59.108 34.615 4.09 0.00 34.97 3.24
1999 5594 3.058224 GCTCAACCAAATAGCGTCTGTTT 60.058 43.478 0.00 0.00 0.00 2.83
2045 5640 2.087646 ACGTAGTACTCCCTTCGTTCC 58.912 52.381 0.00 0.00 41.94 3.62
2046 5641 1.063174 CGTAGTACTCCCTTCGTTCCG 59.937 57.143 0.00 0.00 0.00 4.30
2047 5642 2.359900 GTAGTACTCCCTTCGTTCCGA 58.640 52.381 0.00 0.00 0.00 4.55
2048 5643 1.915141 AGTACTCCCTTCGTTCCGAA 58.085 50.000 0.00 0.00 43.75 4.30
2049 5644 2.242043 AGTACTCCCTTCGTTCCGAAA 58.758 47.619 0.47 0.00 45.23 3.46
2050 5645 2.830321 AGTACTCCCTTCGTTCCGAAAT 59.170 45.455 0.47 0.00 45.23 2.17
2051 5646 2.094762 ACTCCCTTCGTTCCGAAATG 57.905 50.000 0.47 0.00 45.23 2.32
2052 5647 1.346722 ACTCCCTTCGTTCCGAAATGT 59.653 47.619 0.47 0.00 45.23 2.71
2053 5648 2.564062 ACTCCCTTCGTTCCGAAATGTA 59.436 45.455 0.47 0.00 45.23 2.29
2054 5649 3.187700 CTCCCTTCGTTCCGAAATGTAG 58.812 50.000 0.47 0.00 45.23 2.74
2055 5650 2.093869 TCCCTTCGTTCCGAAATGTAGG 60.094 50.000 0.47 0.00 45.23 3.18
2056 5651 2.354403 CCCTTCGTTCCGAAATGTAGGT 60.354 50.000 0.00 0.00 45.23 3.08
2057 5652 2.928116 CCTTCGTTCCGAAATGTAGGTC 59.072 50.000 0.47 0.00 45.23 3.85
2058 5653 3.368116 CCTTCGTTCCGAAATGTAGGTCT 60.368 47.826 0.47 0.00 45.23 3.85
2059 5654 3.947910 TCGTTCCGAAATGTAGGTCTT 57.052 42.857 0.00 0.00 31.06 3.01
2060 5655 4.261578 TCGTTCCGAAATGTAGGTCTTT 57.738 40.909 0.00 0.00 31.06 2.52
2061 5656 3.991773 TCGTTCCGAAATGTAGGTCTTTG 59.008 43.478 0.00 0.00 31.06 2.77
2062 5657 3.744426 CGTTCCGAAATGTAGGTCTTTGT 59.256 43.478 0.00 0.00 0.00 2.83
2063 5658 4.925054 CGTTCCGAAATGTAGGTCTTTGTA 59.075 41.667 0.00 0.00 0.00 2.41
2064 5659 5.061808 CGTTCCGAAATGTAGGTCTTTGTAG 59.938 44.000 0.00 0.00 0.00 2.74
2065 5660 5.988310 TCCGAAATGTAGGTCTTTGTAGA 57.012 39.130 0.00 0.00 0.00 2.59
2066 5661 5.962433 TCCGAAATGTAGGTCTTTGTAGAG 58.038 41.667 0.00 0.00 0.00 2.43
2067 5662 5.713389 TCCGAAATGTAGGTCTTTGTAGAGA 59.287 40.000 0.00 0.00 0.00 3.10
2068 5663 6.380274 TCCGAAATGTAGGTCTTTGTAGAGAT 59.620 38.462 0.00 0.00 0.00 2.75
2069 5664 7.042335 CCGAAATGTAGGTCTTTGTAGAGATT 58.958 38.462 0.00 0.00 0.00 2.40
2070 5665 7.222999 CCGAAATGTAGGTCTTTGTAGAGATTC 59.777 40.741 0.00 0.00 0.00 2.52
2071 5666 7.222999 CGAAATGTAGGTCTTTGTAGAGATTCC 59.777 40.741 0.00 0.00 0.00 3.01
2072 5667 7.496346 AATGTAGGTCTTTGTAGAGATTCCA 57.504 36.000 0.00 0.00 0.00 3.53
2073 5668 6.282199 TGTAGGTCTTTGTAGAGATTCCAC 57.718 41.667 0.00 0.00 0.00 4.02
2074 5669 6.017192 TGTAGGTCTTTGTAGAGATTCCACT 58.983 40.000 0.00 0.00 0.00 4.00
2075 5670 7.179966 TGTAGGTCTTTGTAGAGATTCCACTA 58.820 38.462 0.00 0.00 0.00 2.74
2076 5671 7.839705 TGTAGGTCTTTGTAGAGATTCCACTAT 59.160 37.037 0.00 0.00 0.00 2.12
2077 5672 7.354751 AGGTCTTTGTAGAGATTCCACTATC 57.645 40.000 0.00 0.00 0.00 2.08
2078 5673 6.897966 AGGTCTTTGTAGAGATTCCACTATCA 59.102 38.462 0.00 0.00 0.00 2.15
2079 5674 7.400339 AGGTCTTTGTAGAGATTCCACTATCAA 59.600 37.037 0.00 0.00 0.00 2.57
2080 5675 7.492994 GGTCTTTGTAGAGATTCCACTATCAAC 59.507 40.741 0.00 0.00 0.00 3.18
2081 5676 8.254508 GTCTTTGTAGAGATTCCACTATCAACT 58.745 37.037 0.00 0.00 0.00 3.16
2082 5677 9.475620 TCTTTGTAGAGATTCCACTATCAACTA 57.524 33.333 0.00 0.00 0.00 2.24
2083 5678 9.522804 CTTTGTAGAGATTCCACTATCAACTAC 57.477 37.037 0.00 0.00 37.29 2.73
2084 5679 8.589701 TTGTAGAGATTCCACTATCAACTACA 57.410 34.615 0.00 0.00 40.48 2.74
2085 5680 8.768501 TGTAGAGATTCCACTATCAACTACAT 57.231 34.615 0.00 0.00 39.18 2.29
2086 5681 9.862149 TGTAGAGATTCCACTATCAACTACATA 57.138 33.333 0.00 0.00 39.18 2.29
2088 5683 7.877003 AGAGATTCCACTATCAACTACATACG 58.123 38.462 0.00 0.00 0.00 3.06
2089 5684 6.982852 AGATTCCACTATCAACTACATACGG 58.017 40.000 0.00 0.00 0.00 4.02
2090 5685 6.776116 AGATTCCACTATCAACTACATACGGA 59.224 38.462 0.00 0.00 0.00 4.69
2091 5686 6.971726 TTCCACTATCAACTACATACGGAT 57.028 37.500 0.00 0.00 0.00 4.18
2092 5687 6.327279 TCCACTATCAACTACATACGGATG 57.673 41.667 5.94 5.94 39.16 3.51
2094 5689 6.999871 TCCACTATCAACTACATACGGATGTA 59.000 38.462 19.32 19.32 44.77 2.29
2095 5690 7.668469 TCCACTATCAACTACATACGGATGTAT 59.332 37.037 20.64 9.39 45.42 2.29
2096 5691 8.953313 CCACTATCAACTACATACGGATGTATA 58.047 37.037 20.64 10.04 45.42 1.47
2103 5698 9.452065 CAACTACATACGGATGTATATAGATGC 57.548 37.037 20.64 0.00 45.42 3.91
2104 5699 8.747538 ACTACATACGGATGTATATAGATGCA 57.252 34.615 20.64 0.00 45.42 3.96
2105 5700 9.355916 ACTACATACGGATGTATATAGATGCAT 57.644 33.333 20.64 0.00 45.42 3.96
2108 5703 9.890629 ACATACGGATGTATATAGATGCATTTT 57.109 29.630 12.79 0.00 44.77 1.82
2125 5720 9.970395 GATGCATTTTAAATGTAGATCCATTCA 57.030 29.630 17.51 5.02 34.01 2.57
2134 5729 6.645790 ATGTAGATCCATTCATTTTGCTCC 57.354 37.500 0.00 0.00 0.00 4.70
2135 5730 4.576053 TGTAGATCCATTCATTTTGCTCCG 59.424 41.667 0.00 0.00 0.00 4.63
2136 5731 3.624777 AGATCCATTCATTTTGCTCCGT 58.375 40.909 0.00 0.00 0.00 4.69
2137 5732 4.780815 AGATCCATTCATTTTGCTCCGTA 58.219 39.130 0.00 0.00 0.00 4.02
2138 5733 5.380043 AGATCCATTCATTTTGCTCCGTAT 58.620 37.500 0.00 0.00 0.00 3.06
2139 5734 4.898829 TCCATTCATTTTGCTCCGTATG 57.101 40.909 0.00 0.00 0.00 2.39
2140 5735 4.269183 TCCATTCATTTTGCTCCGTATGT 58.731 39.130 0.00 0.00 0.00 2.29
2141 5736 5.432645 TCCATTCATTTTGCTCCGTATGTA 58.567 37.500 0.00 0.00 0.00 2.29
2142 5737 5.527214 TCCATTCATTTTGCTCCGTATGTAG 59.473 40.000 0.00 0.00 0.00 2.74
2143 5738 5.296780 CCATTCATTTTGCTCCGTATGTAGT 59.703 40.000 0.00 0.00 0.00 2.73
2144 5739 6.422223 CATTCATTTTGCTCCGTATGTAGTC 58.578 40.000 0.00 0.00 0.00 2.59
2145 5740 4.439057 TCATTTTGCTCCGTATGTAGTCC 58.561 43.478 0.00 0.00 0.00 3.85
2146 5741 3.965379 TTTTGCTCCGTATGTAGTCCA 57.035 42.857 0.00 0.00 0.00 4.02
2147 5742 4.481368 TTTTGCTCCGTATGTAGTCCAT 57.519 40.909 0.00 0.00 37.58 3.41
2148 5743 3.728076 TTGCTCCGTATGTAGTCCATC 57.272 47.619 0.00 0.00 34.86 3.51
2149 5744 2.945456 TGCTCCGTATGTAGTCCATCT 58.055 47.619 0.00 0.00 34.86 2.90
2150 5745 4.094830 TGCTCCGTATGTAGTCCATCTA 57.905 45.455 0.00 0.00 34.86 1.98
2151 5746 4.072839 TGCTCCGTATGTAGTCCATCTAG 58.927 47.826 0.00 0.00 34.86 2.43
2152 5747 4.073549 GCTCCGTATGTAGTCCATCTAGT 58.926 47.826 0.00 0.00 34.86 2.57
2153 5748 4.083217 GCTCCGTATGTAGTCCATCTAGTG 60.083 50.000 0.00 0.00 34.86 2.74
2154 5749 5.300411 TCCGTATGTAGTCCATCTAGTGA 57.700 43.478 0.00 0.00 34.86 3.41
2155 5750 5.687780 TCCGTATGTAGTCCATCTAGTGAA 58.312 41.667 0.00 0.00 34.86 3.18
2156 5751 6.124340 TCCGTATGTAGTCCATCTAGTGAAA 58.876 40.000 0.00 0.00 34.86 2.69
2157 5752 6.776116 TCCGTATGTAGTCCATCTAGTGAAAT 59.224 38.462 0.00 0.00 34.86 2.17
2158 5753 7.040617 TCCGTATGTAGTCCATCTAGTGAAATC 60.041 40.741 0.00 0.00 34.86 2.17
2159 5754 7.040340 CCGTATGTAGTCCATCTAGTGAAATCT 60.040 40.741 0.00 0.00 34.86 2.40
2160 5755 8.018520 CGTATGTAGTCCATCTAGTGAAATCTC 58.981 40.741 0.00 0.00 34.86 2.75
2161 5756 9.073475 GTATGTAGTCCATCTAGTGAAATCTCT 57.927 37.037 0.00 0.00 34.86 3.10
2163 5758 9.821240 ATGTAGTCCATCTAGTGAAATCTCTAT 57.179 33.333 0.00 0.00 0.00 1.98
2189 5784 6.712179 AGACTTATACTTTAGGAACGGAGG 57.288 41.667 0.00 0.00 0.00 4.30
2190 5785 5.597594 AGACTTATACTTTAGGAACGGAGGG 59.402 44.000 0.00 0.00 0.00 4.30
2191 5786 5.522641 ACTTATACTTTAGGAACGGAGGGA 58.477 41.667 0.00 0.00 0.00 4.20
2192 5787 5.597594 ACTTATACTTTAGGAACGGAGGGAG 59.402 44.000 0.00 0.00 0.00 4.30
2193 5788 2.322339 ACTTTAGGAACGGAGGGAGT 57.678 50.000 0.00 0.00 0.00 3.85
2194 5789 3.463048 ACTTTAGGAACGGAGGGAGTA 57.537 47.619 0.00 0.00 0.00 2.59
2195 5790 3.095332 ACTTTAGGAACGGAGGGAGTAC 58.905 50.000 0.00 0.00 0.00 2.73
2196 5791 1.755179 TTAGGAACGGAGGGAGTACG 58.245 55.000 0.00 0.00 0.00 3.67
2197 5792 0.620556 TAGGAACGGAGGGAGTACGT 59.379 55.000 0.00 0.00 43.43 3.57
2198 5793 0.620556 AGGAACGGAGGGAGTACGTA 59.379 55.000 0.00 0.00 40.31 3.57
2199 5794 0.735471 GGAACGGAGGGAGTACGTAC 59.265 60.000 18.10 18.10 40.31 3.67
2200 5795 0.375106 GAACGGAGGGAGTACGTACG 59.625 60.000 19.49 15.01 46.37 3.67
2201 5796 4.208632 CGGAGGGAGTACGTACGT 57.791 61.111 25.98 25.98 36.57 3.57
2202 5797 2.009888 CGGAGGGAGTACGTACGTC 58.990 63.158 26.53 16.16 36.57 4.34
2203 5798 1.756375 CGGAGGGAGTACGTACGTCG 61.756 65.000 26.53 15.52 46.00 5.12
2240 5835 9.725019 TGAAGAACAGAAGTACAATGACATAAT 57.275 29.630 0.00 0.00 0.00 1.28
2242 5837 9.950496 AAGAACAGAAGTACAATGACATAATCT 57.050 29.630 0.00 0.00 0.00 2.40
2243 5838 9.376075 AGAACAGAAGTACAATGACATAATCTG 57.624 33.333 0.00 0.00 38.14 2.90
2307 5909 0.916086 ACATTCATACCGGCTGGGAA 59.084 50.000 18.00 10.40 40.75 3.97
2312 5914 1.024271 CATACCGGCTGGGAATTGTG 58.976 55.000 18.00 0.00 40.75 3.33
2332 5934 7.936496 TTGTGATGAGTGCAGGATTAATTAA 57.064 32.000 0.00 0.00 0.00 1.40
2337 5939 5.116180 TGAGTGCAGGATTAATTAAGTCCG 58.884 41.667 15.25 12.66 37.12 4.79
2338 5940 3.877508 AGTGCAGGATTAATTAAGTCCGC 59.122 43.478 20.41 20.41 37.12 5.54
2339 5941 3.003378 GTGCAGGATTAATTAAGTCCGCC 59.997 47.826 22.03 16.32 37.12 6.13
2340 5942 2.552743 GCAGGATTAATTAAGTCCGCCC 59.447 50.000 18.72 9.55 37.12 6.13
2341 5943 3.815809 CAGGATTAATTAAGTCCGCCCA 58.184 45.455 15.25 0.00 37.12 5.36
2342 5944 4.398319 CAGGATTAATTAAGTCCGCCCAT 58.602 43.478 15.25 2.59 37.12 4.00
2343 5945 4.216257 CAGGATTAATTAAGTCCGCCCATG 59.784 45.833 15.25 8.46 37.12 3.66
2344 5946 4.104102 AGGATTAATTAAGTCCGCCCATGA 59.896 41.667 15.25 0.00 37.12 3.07
2345 5947 4.215613 GGATTAATTAAGTCCGCCCATGAC 59.784 45.833 3.94 0.00 0.00 3.06
2346 5948 2.799126 AATTAAGTCCGCCCATGACA 57.201 45.000 0.00 0.00 35.15 3.58
2347 5949 3.297134 AATTAAGTCCGCCCATGACAT 57.703 42.857 0.00 0.00 35.15 3.06
2348 5950 4.431416 AATTAAGTCCGCCCATGACATA 57.569 40.909 0.00 0.00 35.15 2.29
2349 5951 3.469008 TTAAGTCCGCCCATGACATAG 57.531 47.619 0.00 0.00 35.15 2.23
2350 5952 1.204146 AAGTCCGCCCATGACATAGT 58.796 50.000 0.00 0.00 35.15 2.12
2351 5953 0.753262 AGTCCGCCCATGACATAGTC 59.247 55.000 0.00 0.00 35.15 2.59
2352 5954 0.753262 GTCCGCCCATGACATAGTCT 59.247 55.000 0.00 0.00 33.15 3.24
2353 5955 1.040646 TCCGCCCATGACATAGTCTC 58.959 55.000 0.00 0.00 33.15 3.36
2354 5956 0.752658 CCGCCCATGACATAGTCTCA 59.247 55.000 0.00 0.00 33.15 3.27
2355 5957 1.345741 CCGCCCATGACATAGTCTCAT 59.654 52.381 0.00 0.00 33.15 2.90
2356 5958 2.611473 CCGCCCATGACATAGTCTCATC 60.611 54.545 0.00 0.00 33.15 2.92
2357 5959 2.611473 CGCCCATGACATAGTCTCATCC 60.611 54.545 0.00 0.00 33.15 3.51
2358 5960 2.611473 GCCCATGACATAGTCTCATCCG 60.611 54.545 0.00 0.00 33.15 4.18
2359 5961 2.630098 CCCATGACATAGTCTCATCCGT 59.370 50.000 0.00 0.00 33.15 4.69
2360 5962 3.305676 CCCATGACATAGTCTCATCCGTC 60.306 52.174 0.00 0.00 33.15 4.79
2361 5963 3.305676 CCATGACATAGTCTCATCCGTCC 60.306 52.174 0.00 0.00 33.15 4.79
2362 5964 3.298686 TGACATAGTCTCATCCGTCCT 57.701 47.619 0.00 0.00 33.15 3.85
2363 5965 3.632333 TGACATAGTCTCATCCGTCCTT 58.368 45.455 0.00 0.00 33.15 3.36
2364 5966 4.788679 TGACATAGTCTCATCCGTCCTTA 58.211 43.478 0.00 0.00 33.15 2.69
2365 5967 4.822350 TGACATAGTCTCATCCGTCCTTAG 59.178 45.833 0.00 0.00 33.15 2.18
2366 5968 4.145807 ACATAGTCTCATCCGTCCTTAGG 58.854 47.826 0.00 0.00 0.00 2.69
2367 5969 1.404843 AGTCTCATCCGTCCTTAGGC 58.595 55.000 0.00 0.00 0.00 3.93
2368 5970 1.112113 GTCTCATCCGTCCTTAGGCA 58.888 55.000 0.00 0.00 0.00 4.75
2369 5971 1.112113 TCTCATCCGTCCTTAGGCAC 58.888 55.000 0.00 0.00 0.00 5.01
2370 5972 0.249073 CTCATCCGTCCTTAGGCACG 60.249 60.000 13.55 13.55 35.72 5.34
2371 5973 0.681887 TCATCCGTCCTTAGGCACGA 60.682 55.000 19.39 9.74 38.32 4.35
2372 5974 0.174845 CATCCGTCCTTAGGCACGAA 59.825 55.000 19.39 5.06 38.32 3.85
2373 5975 1.120530 ATCCGTCCTTAGGCACGAAT 58.879 50.000 19.39 6.91 38.32 3.34
2374 5976 1.766494 TCCGTCCTTAGGCACGAATA 58.234 50.000 19.39 6.75 38.32 1.75
2375 5977 1.406539 TCCGTCCTTAGGCACGAATAC 59.593 52.381 19.39 0.38 38.32 1.89
2376 5978 1.135527 CCGTCCTTAGGCACGAATACA 59.864 52.381 19.39 0.00 38.32 2.29
2377 5979 2.417651 CCGTCCTTAGGCACGAATACAA 60.418 50.000 19.39 0.00 38.32 2.41
2378 5980 2.601763 CGTCCTTAGGCACGAATACAAC 59.398 50.000 14.80 0.00 38.32 3.32
2379 5981 3.592059 GTCCTTAGGCACGAATACAACA 58.408 45.455 0.00 0.00 0.00 3.33
2380 5982 3.998341 GTCCTTAGGCACGAATACAACAA 59.002 43.478 0.00 0.00 0.00 2.83
2381 5983 4.453136 GTCCTTAGGCACGAATACAACAAA 59.547 41.667 0.00 0.00 0.00 2.83
2382 5984 4.693566 TCCTTAGGCACGAATACAACAAAG 59.306 41.667 0.00 0.00 0.00 2.77
2383 5985 4.142687 CCTTAGGCACGAATACAACAAAGG 60.143 45.833 0.00 0.00 0.00 3.11
2384 5986 2.159382 AGGCACGAATACAACAAAGGG 58.841 47.619 0.00 0.00 0.00 3.95
2385 5987 1.402325 GGCACGAATACAACAAAGGGC 60.402 52.381 0.00 0.00 0.00 5.19
2386 5988 1.727857 GCACGAATACAACAAAGGGCG 60.728 52.381 0.00 0.00 0.00 6.13
2387 5989 1.533731 CACGAATACAACAAAGGGCGT 59.466 47.619 0.00 0.00 0.00 5.68
2388 5990 1.533731 ACGAATACAACAAAGGGCGTG 59.466 47.619 0.00 0.00 0.00 5.34
2389 5991 1.533731 CGAATACAACAAAGGGCGTGT 59.466 47.619 0.00 0.00 0.00 4.49
2390 5992 2.031508 CGAATACAACAAAGGGCGTGTT 60.032 45.455 0.00 0.00 39.79 3.32
2391 5993 3.549221 CGAATACAACAAAGGGCGTGTTT 60.549 43.478 0.00 0.00 37.09 2.83
2392 5994 2.853731 TACAACAAAGGGCGTGTTTG 57.146 45.000 4.59 4.59 37.09 2.93
2393 5995 0.174617 ACAACAAAGGGCGTGTTTGG 59.825 50.000 9.51 0.00 38.90 3.28
2394 5996 0.174617 CAACAAAGGGCGTGTTTGGT 59.825 50.000 9.51 1.50 38.90 3.67
2395 5997 0.899019 AACAAAGGGCGTGTTTGGTT 59.101 45.000 9.51 0.00 38.90 3.67
2396 5998 0.174617 ACAAAGGGCGTGTTTGGTTG 59.825 50.000 9.51 0.00 38.90 3.77
2397 5999 0.457851 CAAAGGGCGTGTTTGGTTGA 59.542 50.000 0.00 0.00 32.26 3.18
2398 6000 1.068434 CAAAGGGCGTGTTTGGTTGAT 59.932 47.619 0.00 0.00 32.26 2.57
2399 6001 0.958822 AAGGGCGTGTTTGGTTGATC 59.041 50.000 0.00 0.00 0.00 2.92
2400 6002 0.179004 AGGGCGTGTTTGGTTGATCA 60.179 50.000 0.00 0.00 0.00 2.92
2401 6003 0.671251 GGGCGTGTTTGGTTGATCAA 59.329 50.000 3.38 3.38 0.00 2.57
2402 6004 1.067821 GGGCGTGTTTGGTTGATCAAA 59.932 47.619 10.35 0.00 34.64 2.69
2403 6005 2.482142 GGGCGTGTTTGGTTGATCAAAA 60.482 45.455 10.35 0.00 38.21 2.44
2404 6006 3.389221 GGCGTGTTTGGTTGATCAAAAT 58.611 40.909 10.35 0.00 38.21 1.82
2405 6007 3.807071 GGCGTGTTTGGTTGATCAAAATT 59.193 39.130 10.35 0.00 38.21 1.82
2406 6008 4.985409 GGCGTGTTTGGTTGATCAAAATTA 59.015 37.500 10.35 0.00 38.21 1.40
2407 6009 5.637387 GGCGTGTTTGGTTGATCAAAATTAT 59.363 36.000 10.35 0.00 38.21 1.28
2408 6010 6.147000 GGCGTGTTTGGTTGATCAAAATTATT 59.853 34.615 10.35 0.00 38.21 1.40
2409 6011 7.329717 GGCGTGTTTGGTTGATCAAAATTATTA 59.670 33.333 10.35 0.00 38.21 0.98
2410 6012 8.868916 GCGTGTTTGGTTGATCAAAATTATTAT 58.131 29.630 10.35 0.00 38.21 1.28
2436 6038 5.678955 GAGGTACCTCTTGTAAAGGTCAT 57.321 43.478 31.12 0.00 43.85 3.06
2437 6039 6.051179 GAGGTACCTCTTGTAAAGGTCATT 57.949 41.667 31.12 0.00 43.85 2.57
2438 6040 6.449830 AGGTACCTCTTGTAAAGGTCATTT 57.550 37.500 9.21 0.00 43.85 2.32
2439 6041 6.849151 AGGTACCTCTTGTAAAGGTCATTTT 58.151 36.000 9.21 0.00 43.85 1.82
2440 6042 6.940867 AGGTACCTCTTGTAAAGGTCATTTTC 59.059 38.462 9.21 0.00 43.85 2.29
2441 6043 6.713450 GGTACCTCTTGTAAAGGTCATTTTCA 59.287 38.462 4.06 0.00 43.85 2.69
2442 6044 7.393515 GGTACCTCTTGTAAAGGTCATTTTCAT 59.606 37.037 4.06 0.00 43.85 2.57
2443 6045 7.454260 ACCTCTTGTAAAGGTCATTTTCATC 57.546 36.000 0.00 0.00 43.85 2.92
2444 6046 7.234355 ACCTCTTGTAAAGGTCATTTTCATCT 58.766 34.615 0.00 0.00 43.85 2.90
2445 6047 7.391833 ACCTCTTGTAAAGGTCATTTTCATCTC 59.608 37.037 0.00 0.00 43.85 2.75
2446 6048 7.148171 CCTCTTGTAAAGGTCATTTTCATCTCC 60.148 40.741 0.00 0.00 46.24 3.71
2447 6049 7.461749 TCTTGTAAAGGTCATTTTCATCTCCT 58.538 34.615 0.00 0.00 46.24 3.69
2448 6050 7.607991 TCTTGTAAAGGTCATTTTCATCTCCTC 59.392 37.037 0.00 0.00 46.24 3.71
2449 6051 7.020827 TGTAAAGGTCATTTTCATCTCCTCT 57.979 36.000 0.00 0.00 32.01 3.69
2450 6052 6.881065 TGTAAAGGTCATTTTCATCTCCTCTG 59.119 38.462 0.00 0.00 32.01 3.35
2451 6053 4.500499 AGGTCATTTTCATCTCCTCTGG 57.500 45.455 0.00 0.00 0.00 3.86
2452 6054 3.848975 AGGTCATTTTCATCTCCTCTGGT 59.151 43.478 0.00 0.00 0.00 4.00
2453 6055 3.944015 GGTCATTTTCATCTCCTCTGGTG 59.056 47.826 0.00 0.00 0.00 4.17
2454 6056 3.944015 GTCATTTTCATCTCCTCTGGTGG 59.056 47.826 0.00 0.00 0.00 4.61
2455 6057 3.588842 TCATTTTCATCTCCTCTGGTGGT 59.411 43.478 0.00 0.00 0.00 4.16
2456 6058 3.423539 TTTTCATCTCCTCTGGTGGTG 57.576 47.619 0.00 0.00 0.00 4.17
2457 6059 2.325661 TTCATCTCCTCTGGTGGTGA 57.674 50.000 0.00 0.00 34.97 4.02
2458 6060 1.561643 TCATCTCCTCTGGTGGTGAC 58.438 55.000 0.00 0.00 32.32 3.67
2459 6061 1.203174 TCATCTCCTCTGGTGGTGACA 60.203 52.381 0.00 0.00 32.32 3.58
2460 6062 1.625315 CATCTCCTCTGGTGGTGACAA 59.375 52.381 0.00 0.00 46.06 3.18
2461 6063 1.342074 TCTCCTCTGGTGGTGACAAG 58.658 55.000 0.00 0.00 46.06 3.16
2462 6064 1.051812 CTCCTCTGGTGGTGACAAGT 58.948 55.000 0.00 0.00 46.06 3.16
2463 6065 0.758734 TCCTCTGGTGGTGACAAGTG 59.241 55.000 0.00 0.00 46.06 3.16
2464 6066 0.250467 CCTCTGGTGGTGACAAGTGG 60.250 60.000 0.00 0.00 46.06 4.00
2465 6067 0.758734 CTCTGGTGGTGACAAGTGGA 59.241 55.000 0.00 0.00 46.06 4.02
2466 6068 1.140852 CTCTGGTGGTGACAAGTGGAA 59.859 52.381 0.00 0.00 46.06 3.53
2467 6069 1.134220 TCTGGTGGTGACAAGTGGAAC 60.134 52.381 0.00 0.00 46.06 3.62
2468 6070 0.462937 TGGTGGTGACAAGTGGAACG 60.463 55.000 0.00 0.00 46.06 3.95
2469 6071 1.647084 GTGGTGACAAGTGGAACGC 59.353 57.895 0.00 0.00 46.06 4.84
2470 6072 1.092921 GTGGTGACAAGTGGAACGCA 61.093 55.000 0.00 0.00 46.06 5.24
2471 6073 0.179032 TGGTGACAAGTGGAACGCAT 60.179 50.000 0.00 0.00 37.40 4.73
2472 6074 0.238289 GGTGACAAGTGGAACGCATG 59.762 55.000 0.00 0.00 45.86 4.06
2476 6078 3.460114 CAAGTGGAACGCATGTGTG 57.540 52.632 13.66 0.00 45.86 3.82
2477 6079 0.662619 CAAGTGGAACGCATGTGTGT 59.337 50.000 13.66 3.21 45.86 3.72
2478 6080 0.944386 AAGTGGAACGCATGTGTGTC 59.056 50.000 13.66 12.00 45.86 3.67
2479 6081 0.179059 AGTGGAACGCATGTGTGTCA 60.179 50.000 13.66 11.38 45.86 3.58
2480 6082 0.041312 GTGGAACGCATGTGTGTCAC 60.041 55.000 21.45 21.45 37.87 3.67
2481 6083 0.179059 TGGAACGCATGTGTGTCACT 60.179 50.000 13.66 0.00 37.87 3.41
2482 6084 0.944386 GGAACGCATGTGTGTCACTT 59.056 50.000 13.66 0.00 37.87 3.16
2483 6085 1.334059 GGAACGCATGTGTGTCACTTG 60.334 52.381 13.66 10.13 40.80 3.16
2484 6086 1.330521 GAACGCATGTGTGTCACTTGT 59.669 47.619 13.66 0.00 40.25 3.16
2485 6087 0.937304 ACGCATGTGTGTCACTTGTC 59.063 50.000 11.96 8.06 40.25 3.18
2486 6088 0.111134 CGCATGTGTGTCACTTGTCG 60.111 55.000 4.27 13.52 40.25 4.35
2487 6089 0.384725 GCATGTGTGTCACTTGTCGC 60.385 55.000 4.27 0.00 40.25 5.19
2488 6090 0.936600 CATGTGTGTCACTTGTCGCA 59.063 50.000 4.27 0.00 35.64 5.10
2489 6091 1.330213 CATGTGTGTCACTTGTCGCAA 59.670 47.619 4.27 0.00 35.64 4.85
2490 6092 0.724549 TGTGTGTCACTTGTCGCAAC 59.275 50.000 4.27 0.00 35.11 4.17
2491 6093 1.006832 GTGTGTCACTTGTCGCAACT 58.993 50.000 4.27 0.00 0.00 3.16
2492 6094 2.198406 GTGTGTCACTTGTCGCAACTA 58.802 47.619 4.27 0.00 0.00 2.24
2493 6095 2.218759 GTGTGTCACTTGTCGCAACTAG 59.781 50.000 4.27 0.00 34.82 2.57
2494 6096 2.100087 TGTGTCACTTGTCGCAACTAGA 59.900 45.455 4.27 0.00 33.20 2.43
2495 6097 2.726760 GTGTCACTTGTCGCAACTAGAG 59.273 50.000 0.00 0.00 33.20 2.43
2496 6098 2.621526 TGTCACTTGTCGCAACTAGAGA 59.378 45.455 0.00 0.00 33.20 3.10
2497 6099 3.238441 GTCACTTGTCGCAACTAGAGAG 58.762 50.000 0.00 0.00 31.14 3.20
2498 6100 1.989165 CACTTGTCGCAACTAGAGAGC 59.011 52.381 0.00 0.00 33.20 4.09
2499 6101 1.067495 ACTTGTCGCAACTAGAGAGCC 60.067 52.381 0.00 0.00 33.20 4.70
2500 6102 1.203523 CTTGTCGCAACTAGAGAGCCT 59.796 52.381 0.00 0.00 30.82 4.58
2501 6103 1.257743 TGTCGCAACTAGAGAGCCTT 58.742 50.000 0.00 0.00 0.00 4.35
2502 6104 1.202582 TGTCGCAACTAGAGAGCCTTC 59.797 52.381 0.00 0.00 0.00 3.46
2503 6105 1.474879 GTCGCAACTAGAGAGCCTTCT 59.525 52.381 0.00 0.00 36.01 2.85
2527 6129 1.227704 TTTTTCTCACGCGCAGGGA 60.228 52.632 5.73 0.47 46.37 4.20
2532 6134 3.068064 TCACGCGCAGGGAGATGA 61.068 61.111 5.73 0.00 46.37 2.92
2533 6135 2.125552 CACGCGCAGGGAGATGAA 60.126 61.111 5.73 0.00 46.37 2.57
2534 6136 1.522355 CACGCGCAGGGAGATGAAT 60.522 57.895 5.73 0.00 46.37 2.57
2535 6137 1.522355 ACGCGCAGGGAGATGAATG 60.522 57.895 5.73 0.00 46.37 2.67
2536 6138 2.249535 CGCGCAGGGAGATGAATGG 61.250 63.158 8.75 0.00 46.37 3.16
2537 6139 1.895707 GCGCAGGGAGATGAATGGG 60.896 63.158 0.30 0.00 0.00 4.00
2538 6140 1.528824 CGCAGGGAGATGAATGGGT 59.471 57.895 0.00 0.00 0.00 4.51
2539 6141 0.107017 CGCAGGGAGATGAATGGGTT 60.107 55.000 0.00 0.00 0.00 4.11
2540 6142 1.683011 CGCAGGGAGATGAATGGGTTT 60.683 52.381 0.00 0.00 0.00 3.27
2541 6143 2.421388 CGCAGGGAGATGAATGGGTTTA 60.421 50.000 0.00 0.00 0.00 2.01
2542 6144 3.748668 CGCAGGGAGATGAATGGGTTTAT 60.749 47.826 0.00 0.00 0.00 1.40
2543 6145 4.218312 GCAGGGAGATGAATGGGTTTATT 58.782 43.478 0.00 0.00 0.00 1.40
2544 6146 4.651045 GCAGGGAGATGAATGGGTTTATTT 59.349 41.667 0.00 0.00 0.00 1.40
2545 6147 5.452356 GCAGGGAGATGAATGGGTTTATTTG 60.452 44.000 0.00 0.00 0.00 2.32
2546 6148 5.658190 CAGGGAGATGAATGGGTTTATTTGT 59.342 40.000 0.00 0.00 0.00 2.83
2547 6149 5.658190 AGGGAGATGAATGGGTTTATTTGTG 59.342 40.000 0.00 0.00 0.00 3.33
2548 6150 5.422012 GGGAGATGAATGGGTTTATTTGTGT 59.578 40.000 0.00 0.00 0.00 3.72
2549 6151 6.070824 GGGAGATGAATGGGTTTATTTGTGTT 60.071 38.462 0.00 0.00 0.00 3.32
2550 6152 7.386059 GGAGATGAATGGGTTTATTTGTGTTT 58.614 34.615 0.00 0.00 0.00 2.83
2551 6153 7.877612 GGAGATGAATGGGTTTATTTGTGTTTT 59.122 33.333 0.00 0.00 0.00 2.43
2552 6154 9.271828 GAGATGAATGGGTTTATTTGTGTTTTT 57.728 29.630 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 3.525537 TCAGCCAGCTTTTCTATCTTCG 58.474 45.455 0.00 0.00 0.00 3.79
76 77 3.914364 GCAAATTAGTTGAACCGCTGAAG 59.086 43.478 0.00 0.00 39.87 3.02
83 84 6.593770 CCCAAATAAGGCAAATTAGTTGAACC 59.406 38.462 13.79 0.00 41.09 3.62
110 111 0.609131 TTGCCAAGCCTGGAAGCTAC 60.609 55.000 5.23 0.00 46.92 3.58
170 174 8.394121 GCAAAGTTATTTTCAACAAAATGTGGA 58.606 29.630 3.45 0.00 41.47 4.02
334 338 0.538057 AGTGGACATGCAACAGGTGG 60.538 55.000 0.00 0.00 0.00 4.61
448 452 8.986991 AGGACTTCATGAGTTACTAAGATCAAT 58.013 33.333 0.00 0.00 39.19 2.57
449 453 8.367660 AGGACTTCATGAGTTACTAAGATCAA 57.632 34.615 0.00 0.00 39.19 2.57
450 454 7.962995 AGGACTTCATGAGTTACTAAGATCA 57.037 36.000 0.00 0.00 39.19 2.92
451 455 9.738832 GTTAGGACTTCATGAGTTACTAAGATC 57.261 37.037 9.55 0.00 39.19 2.75
452 456 9.482175 AGTTAGGACTTCATGAGTTACTAAGAT 57.518 33.333 9.55 1.97 39.19 2.40
453 457 8.880991 AGTTAGGACTTCATGAGTTACTAAGA 57.119 34.615 9.55 0.00 39.19 2.10
454 458 8.192110 GGAGTTAGGACTTCATGAGTTACTAAG 58.808 40.741 9.55 0.00 39.19 2.18
455 459 7.123847 GGGAGTTAGGACTTCATGAGTTACTAA 59.876 40.741 6.32 6.32 39.19 2.24
456 460 6.606395 GGGAGTTAGGACTTCATGAGTTACTA 59.394 42.308 0.00 0.00 39.19 1.82
457 461 5.422650 GGGAGTTAGGACTTCATGAGTTACT 59.577 44.000 0.00 0.00 39.19 2.24
458 462 5.422650 AGGGAGTTAGGACTTCATGAGTTAC 59.577 44.000 0.00 0.00 39.19 2.50
459 463 5.590818 AGGGAGTTAGGACTTCATGAGTTA 58.409 41.667 0.00 0.00 39.19 2.24
460 464 4.430441 AGGGAGTTAGGACTTCATGAGTT 58.570 43.478 0.00 0.00 39.19 3.01
461 465 4.067944 AGGGAGTTAGGACTTCATGAGT 57.932 45.455 0.00 0.00 42.70 3.41
462 466 6.074648 AGATAGGGAGTTAGGACTTCATGAG 58.925 44.000 0.00 0.00 35.88 2.90
463 467 6.031964 AGATAGGGAGTTAGGACTTCATGA 57.968 41.667 0.00 0.00 35.88 3.07
464 468 6.739331 AAGATAGGGAGTTAGGACTTCATG 57.261 41.667 0.00 0.00 35.88 3.07
465 469 8.068733 AGTTAAGATAGGGAGTTAGGACTTCAT 58.931 37.037 0.00 0.00 35.88 2.57
466 470 7.420029 AGTTAAGATAGGGAGTTAGGACTTCA 58.580 38.462 0.00 0.00 35.88 3.02
467 471 7.560626 TGAGTTAAGATAGGGAGTTAGGACTTC 59.439 40.741 0.00 0.00 35.88 3.01
468 472 7.342541 GTGAGTTAAGATAGGGAGTTAGGACTT 59.657 40.741 0.00 0.00 35.88 3.01
469 473 6.834969 GTGAGTTAAGATAGGGAGTTAGGACT 59.165 42.308 0.00 0.00 39.32 3.85
470 474 6.606395 TGTGAGTTAAGATAGGGAGTTAGGAC 59.394 42.308 0.00 0.00 0.00 3.85
471 475 6.738635 TGTGAGTTAAGATAGGGAGTTAGGA 58.261 40.000 0.00 0.00 0.00 2.94
472 476 7.419711 TTGTGAGTTAAGATAGGGAGTTAGG 57.580 40.000 0.00 0.00 0.00 2.69
473 477 9.152595 GTTTTGTGAGTTAAGATAGGGAGTTAG 57.847 37.037 0.00 0.00 0.00 2.34
474 478 8.098912 GGTTTTGTGAGTTAAGATAGGGAGTTA 58.901 37.037 0.00 0.00 0.00 2.24
475 479 6.940867 GGTTTTGTGAGTTAAGATAGGGAGTT 59.059 38.462 0.00 0.00 0.00 3.01
476 480 6.473758 GGTTTTGTGAGTTAAGATAGGGAGT 58.526 40.000 0.00 0.00 0.00 3.85
477 481 5.880887 GGGTTTTGTGAGTTAAGATAGGGAG 59.119 44.000 0.00 0.00 0.00 4.30
478 482 5.570034 CGGGTTTTGTGAGTTAAGATAGGGA 60.570 44.000 0.00 0.00 0.00 4.20
479 483 4.634443 CGGGTTTTGTGAGTTAAGATAGGG 59.366 45.833 0.00 0.00 0.00 3.53
480 484 4.094442 GCGGGTTTTGTGAGTTAAGATAGG 59.906 45.833 0.00 0.00 0.00 2.57
481 485 4.693566 TGCGGGTTTTGTGAGTTAAGATAG 59.306 41.667 0.00 0.00 0.00 2.08
482 486 4.643463 TGCGGGTTTTGTGAGTTAAGATA 58.357 39.130 0.00 0.00 0.00 1.98
483 487 3.482436 TGCGGGTTTTGTGAGTTAAGAT 58.518 40.909 0.00 0.00 0.00 2.40
484 488 2.920524 TGCGGGTTTTGTGAGTTAAGA 58.079 42.857 0.00 0.00 0.00 2.10
485 489 3.915437 ATGCGGGTTTTGTGAGTTAAG 57.085 42.857 0.00 0.00 0.00 1.85
486 490 4.156922 CCATATGCGGGTTTTGTGAGTTAA 59.843 41.667 0.00 0.00 0.00 2.01
487 491 3.692101 CCATATGCGGGTTTTGTGAGTTA 59.308 43.478 0.00 0.00 0.00 2.24
488 492 2.491693 CCATATGCGGGTTTTGTGAGTT 59.508 45.455 0.00 0.00 0.00 3.01
489 493 2.091541 CCATATGCGGGTTTTGTGAGT 58.908 47.619 0.00 0.00 0.00 3.41
490 494 2.355756 CTCCATATGCGGGTTTTGTGAG 59.644 50.000 0.00 0.00 0.00 3.51
491 495 2.290641 ACTCCATATGCGGGTTTTGTGA 60.291 45.455 0.00 0.00 0.00 3.58
492 496 2.091541 ACTCCATATGCGGGTTTTGTG 58.908 47.619 0.00 0.00 0.00 3.33
493 497 2.091541 CACTCCATATGCGGGTTTTGT 58.908 47.619 0.00 0.00 0.00 2.83
494 498 2.091541 ACACTCCATATGCGGGTTTTG 58.908 47.619 0.00 0.00 0.00 2.44
495 499 2.365582 GACACTCCATATGCGGGTTTT 58.634 47.619 0.00 0.00 0.00 2.43
496 500 1.742411 CGACACTCCATATGCGGGTTT 60.742 52.381 0.00 0.00 0.00 3.27
497 501 0.179084 CGACACTCCATATGCGGGTT 60.179 55.000 0.00 0.00 0.00 4.11
498 502 1.441729 CGACACTCCATATGCGGGT 59.558 57.895 0.00 0.00 0.00 5.28
499 503 1.956170 GCGACACTCCATATGCGGG 60.956 63.158 0.00 0.00 0.00 6.13
500 504 0.601046 ATGCGACACTCCATATGCGG 60.601 55.000 0.00 0.00 0.00 5.69
501 505 0.786581 GATGCGACACTCCATATGCG 59.213 55.000 0.00 0.00 0.00 4.73
502 506 0.786581 CGATGCGACACTCCATATGC 59.213 55.000 0.00 0.00 0.00 3.14
503 507 0.786581 GCGATGCGACACTCCATATG 59.213 55.000 0.00 0.00 0.00 1.78
504 508 0.319900 GGCGATGCGACACTCCATAT 60.320 55.000 0.00 0.00 33.63 1.78
505 509 1.067416 GGCGATGCGACACTCCATA 59.933 57.895 0.00 0.00 33.63 2.74
506 510 2.202932 GGCGATGCGACACTCCAT 60.203 61.111 0.00 0.00 33.63 3.41
507 511 3.647649 CTGGCGATGCGACACTCCA 62.648 63.158 0.00 0.00 41.22 3.86
508 512 2.887568 CTGGCGATGCGACACTCC 60.888 66.667 0.00 0.00 41.22 3.85
509 513 2.887568 CCTGGCGATGCGACACTC 60.888 66.667 0.00 0.00 41.22 3.51
515 519 4.897357 TAGCAGCCTGGCGATGCG 62.897 66.667 22.37 8.54 44.64 4.73
525 529 3.987868 GCTTAAAAACAAAGGTAGCAGCC 59.012 43.478 0.00 0.00 0.00 4.85
526 530 4.681483 CAGCTTAAAAACAAAGGTAGCAGC 59.319 41.667 0.00 0.00 33.55 5.25
533 537 7.595311 AACAAGTTCAGCTTAAAAACAAAGG 57.405 32.000 0.00 0.00 35.27 3.11
538 542 6.198403 GCAGGTAACAAGTTCAGCTTAAAAAC 59.802 38.462 0.00 0.00 35.27 2.43
540 544 5.592688 AGCAGGTAACAAGTTCAGCTTAAAA 59.407 36.000 0.00 0.00 35.27 1.52
541 545 5.130350 AGCAGGTAACAAGTTCAGCTTAAA 58.870 37.500 0.00 0.00 35.27 1.52
542 546 4.714632 AGCAGGTAACAAGTTCAGCTTAA 58.285 39.130 0.00 0.00 35.27 1.85
543 547 4.351874 AGCAGGTAACAAGTTCAGCTTA 57.648 40.909 0.00 0.00 35.27 3.09
544 548 3.214696 AGCAGGTAACAAGTTCAGCTT 57.785 42.857 0.00 0.00 38.08 3.74
545 549 2.938956 AGCAGGTAACAAGTTCAGCT 57.061 45.000 0.00 0.00 41.41 4.24
546 550 4.571176 GGTATAGCAGGTAACAAGTTCAGC 59.429 45.833 0.00 0.00 41.41 4.26
547 551 5.978814 AGGTATAGCAGGTAACAAGTTCAG 58.021 41.667 4.48 0.00 41.41 3.02
548 552 6.368779 AAGGTATAGCAGGTAACAAGTTCA 57.631 37.500 4.48 0.00 41.41 3.18
549 553 7.389607 TCAAAAGGTATAGCAGGTAACAAGTTC 59.610 37.037 4.48 0.00 41.41 3.01
550 554 7.228590 TCAAAAGGTATAGCAGGTAACAAGTT 58.771 34.615 4.48 0.00 41.41 2.66
551 555 6.775708 TCAAAAGGTATAGCAGGTAACAAGT 58.224 36.000 4.48 0.00 41.41 3.16
552 556 7.681939 TTCAAAAGGTATAGCAGGTAACAAG 57.318 36.000 4.48 0.00 41.41 3.16
553 557 8.644374 AATTCAAAAGGTATAGCAGGTAACAA 57.356 30.769 4.48 0.00 41.41 2.83
554 558 7.885922 TGAATTCAAAAGGTATAGCAGGTAACA 59.114 33.333 5.45 0.00 41.41 2.41
555 559 8.276252 TGAATTCAAAAGGTATAGCAGGTAAC 57.724 34.615 5.45 0.00 0.00 2.50
556 560 8.325787 TCTGAATTCAAAAGGTATAGCAGGTAA 58.674 33.333 9.88 0.00 0.00 2.85
557 561 7.857456 TCTGAATTCAAAAGGTATAGCAGGTA 58.143 34.615 9.88 0.00 0.00 3.08
558 562 6.721318 TCTGAATTCAAAAGGTATAGCAGGT 58.279 36.000 9.88 0.00 0.00 4.00
559 563 7.630242 TTCTGAATTCAAAAGGTATAGCAGG 57.370 36.000 9.88 0.00 0.00 4.85
560 564 7.066766 AGCTTCTGAATTCAAAAGGTATAGCAG 59.933 37.037 21.55 3.24 0.00 4.24
561 565 6.886459 AGCTTCTGAATTCAAAAGGTATAGCA 59.114 34.615 21.55 0.00 0.00 3.49
562 566 7.066284 TGAGCTTCTGAATTCAAAAGGTATAGC 59.934 37.037 22.59 12.77 30.20 2.97
563 567 8.498054 TGAGCTTCTGAATTCAAAAGGTATAG 57.502 34.615 22.59 3.11 30.20 1.31
564 568 8.896744 CATGAGCTTCTGAATTCAAAAGGTATA 58.103 33.333 22.59 16.06 30.20 1.47
565 569 7.630082 GCATGAGCTTCTGAATTCAAAAGGTAT 60.630 37.037 22.59 14.52 37.91 2.73
566 570 6.349611 GCATGAGCTTCTGAATTCAAAAGGTA 60.350 38.462 22.59 13.22 37.91 3.08
567 571 5.566230 GCATGAGCTTCTGAATTCAAAAGGT 60.566 40.000 22.70 22.70 37.91 3.50
568 572 4.863131 GCATGAGCTTCTGAATTCAAAAGG 59.137 41.667 20.37 8.91 37.91 3.11
569 573 5.345202 GTGCATGAGCTTCTGAATTCAAAAG 59.655 40.000 15.83 15.83 42.74 2.27
570 574 5.010314 AGTGCATGAGCTTCTGAATTCAAAA 59.990 36.000 9.88 1.30 42.74 2.44
571 575 4.521639 AGTGCATGAGCTTCTGAATTCAAA 59.478 37.500 9.88 6.29 42.74 2.69
572 576 4.077108 AGTGCATGAGCTTCTGAATTCAA 58.923 39.130 9.88 0.00 42.74 2.69
573 577 3.682696 AGTGCATGAGCTTCTGAATTCA 58.317 40.909 8.12 8.12 42.74 2.57
574 578 3.065095 GGAGTGCATGAGCTTCTGAATTC 59.935 47.826 0.00 0.00 42.74 2.17
575 579 3.015327 GGAGTGCATGAGCTTCTGAATT 58.985 45.455 0.00 0.00 42.74 2.17
578 582 0.978907 TGGAGTGCATGAGCTTCTGA 59.021 50.000 0.00 0.00 42.74 3.27
589 593 4.320421 CGAAGTGAAATGAAATGGAGTGCA 60.320 41.667 0.00 0.00 0.00 4.57
595 599 5.630680 CAGGAAACGAAGTGAAATGAAATGG 59.369 40.000 0.00 0.00 45.00 3.16
600 604 6.928979 TTTACAGGAAACGAAGTGAAATGA 57.071 33.333 0.00 0.00 45.00 2.57
602 606 7.745620 AGATTTACAGGAAACGAAGTGAAAT 57.254 32.000 0.00 0.00 45.00 2.17
603 607 8.842358 ATAGATTTACAGGAAACGAAGTGAAA 57.158 30.769 0.00 0.00 45.00 2.69
604 608 8.842358 AATAGATTTACAGGAAACGAAGTGAA 57.158 30.769 0.00 0.00 45.00 3.18
605 609 8.092068 TGAATAGATTTACAGGAAACGAAGTGA 58.908 33.333 0.00 0.00 45.00 3.41
606 610 8.251750 TGAATAGATTTACAGGAAACGAAGTG 57.748 34.615 0.00 0.00 45.00 3.16
608 612 9.098355 TGATGAATAGATTTACAGGAAACGAAG 57.902 33.333 0.00 0.00 0.00 3.79
609 613 9.613428 ATGATGAATAGATTTACAGGAAACGAA 57.387 29.630 0.00 0.00 0.00 3.85
772 780 0.676184 GATGCTGATCTCACCGCCTA 59.324 55.000 0.00 0.00 0.00 3.93
789 797 3.147595 TGGCCGCTAGTGCTCGAT 61.148 61.111 0.00 0.00 36.97 3.59
792 800 4.082523 TGGTGGCCGCTAGTGCTC 62.083 66.667 17.49 0.00 36.97 4.26
1155 1177 2.997315 CGGAGCCTGTCCCAGTGA 60.997 66.667 0.00 0.00 43.47 3.41
1218 1240 2.038426 TCCAATTGAGATGACGGTGTGT 59.962 45.455 7.12 0.00 0.00 3.72
1356 1436 2.492012 GGCCACTAATCATCAGCTGAG 58.508 52.381 22.96 13.90 37.28 3.35
1441 1521 1.120530 ACTTCGCGATGTTATCCCCT 58.879 50.000 20.68 0.00 0.00 4.79
1507 1596 1.594310 GACTTCGCCCTTCTCTGCT 59.406 57.895 0.00 0.00 0.00 4.24
1508 1597 1.807573 CGACTTCGCCCTTCTCTGC 60.808 63.158 0.00 0.00 0.00 4.26
1509 1598 0.179150 CTCGACTTCGCCCTTCTCTG 60.179 60.000 0.00 0.00 39.60 3.35
1631 1736 5.698089 TCAATCCATCAATCATAAGTCGCTC 59.302 40.000 0.00 0.00 0.00 5.03
1687 1964 5.715921 TCTCATTTTTCCCCCTCTTTTCTT 58.284 37.500 0.00 0.00 0.00 2.52
1700 1982 5.984926 TGCACATGAAAGGTTCTCATTTTTC 59.015 36.000 0.00 0.00 30.99 2.29
1787 5351 7.555087 TCAACAAGTTCCATGACAAGAAAAAT 58.445 30.769 0.00 0.00 0.00 1.82
1936 5524 6.889722 TCTCTTTTTCCTTTTCAGAAACCTCA 59.110 34.615 0.00 0.00 33.11 3.86
1963 5558 6.832520 TTGGTTGAGCAGCAATCTAATTTA 57.167 33.333 0.00 0.00 37.98 1.40
2023 5618 3.879892 GGAACGAAGGGAGTACTACGTAT 59.120 47.826 0.00 0.00 33.76 3.06
2041 5636 6.161381 TCTACAAAGACCTACATTTCGGAAC 58.839 40.000 0.00 0.00 0.00 3.62
2042 5637 6.209986 TCTCTACAAAGACCTACATTTCGGAA 59.790 38.462 0.00 0.00 0.00 4.30
2043 5638 5.713389 TCTCTACAAAGACCTACATTTCGGA 59.287 40.000 0.00 0.00 0.00 4.55
2044 5639 5.962433 TCTCTACAAAGACCTACATTTCGG 58.038 41.667 0.00 0.00 0.00 4.30
2045 5640 7.222999 GGAATCTCTACAAAGACCTACATTTCG 59.777 40.741 0.00 0.00 0.00 3.46
2046 5641 8.041323 TGGAATCTCTACAAAGACCTACATTTC 58.959 37.037 0.00 0.00 0.00 2.17
2047 5642 7.824779 GTGGAATCTCTACAAAGACCTACATTT 59.175 37.037 0.00 0.00 0.00 2.32
2048 5643 7.181125 AGTGGAATCTCTACAAAGACCTACATT 59.819 37.037 0.00 0.00 29.47 2.71
2049 5644 6.670027 AGTGGAATCTCTACAAAGACCTACAT 59.330 38.462 0.00 0.00 29.47 2.29
2050 5645 6.017192 AGTGGAATCTCTACAAAGACCTACA 58.983 40.000 0.00 0.00 29.47 2.74
2051 5646 6.532988 AGTGGAATCTCTACAAAGACCTAC 57.467 41.667 0.00 0.00 29.47 3.18
2052 5647 8.059461 TGATAGTGGAATCTCTACAAAGACCTA 58.941 37.037 0.00 0.00 29.47 3.08
2053 5648 6.897966 TGATAGTGGAATCTCTACAAAGACCT 59.102 38.462 0.00 0.00 29.47 3.85
2054 5649 7.113658 TGATAGTGGAATCTCTACAAAGACC 57.886 40.000 0.00 0.00 29.47 3.85
2055 5650 8.254508 AGTTGATAGTGGAATCTCTACAAAGAC 58.745 37.037 0.00 0.00 29.47 3.01
2056 5651 8.367660 AGTTGATAGTGGAATCTCTACAAAGA 57.632 34.615 0.00 0.00 29.47 2.52
2057 5652 9.522804 GTAGTTGATAGTGGAATCTCTACAAAG 57.477 37.037 0.00 0.00 35.97 2.77
2058 5653 9.031537 TGTAGTTGATAGTGGAATCTCTACAAA 57.968 33.333 13.99 0.00 38.86 2.83
2059 5654 8.589701 TGTAGTTGATAGTGGAATCTCTACAA 57.410 34.615 13.99 0.00 38.86 2.41
2060 5655 8.768501 ATGTAGTTGATAGTGGAATCTCTACA 57.231 34.615 16.41 16.41 41.72 2.74
2062 5657 9.000486 CGTATGTAGTTGATAGTGGAATCTCTA 58.000 37.037 0.00 0.00 0.00 2.43
2063 5658 7.040340 CCGTATGTAGTTGATAGTGGAATCTCT 60.040 40.741 0.00 0.00 0.00 3.10
2064 5659 7.040617 TCCGTATGTAGTTGATAGTGGAATCTC 60.041 40.741 0.00 0.00 0.00 2.75
2065 5660 6.776116 TCCGTATGTAGTTGATAGTGGAATCT 59.224 38.462 0.00 0.00 0.00 2.40
2066 5661 6.978338 TCCGTATGTAGTTGATAGTGGAATC 58.022 40.000 0.00 0.00 0.00 2.52
2067 5662 6.971726 TCCGTATGTAGTTGATAGTGGAAT 57.028 37.500 0.00 0.00 0.00 3.01
2068 5663 6.322969 ACATCCGTATGTAGTTGATAGTGGAA 59.677 38.462 0.00 0.00 44.66 3.53
2069 5664 5.831525 ACATCCGTATGTAGTTGATAGTGGA 59.168 40.000 0.00 0.00 44.66 4.02
2070 5665 6.085555 ACATCCGTATGTAGTTGATAGTGG 57.914 41.667 0.00 0.00 44.66 4.00
2099 5694 9.970395 TGAATGGATCTACATTTAAAATGCATC 57.030 29.630 0.00 0.00 40.92 3.91
2108 5703 8.632679 GGAGCAAAATGAATGGATCTACATTTA 58.367 33.333 7.71 1.25 40.92 1.40
2109 5704 7.495055 GGAGCAAAATGAATGGATCTACATTT 58.505 34.615 0.00 0.00 40.92 2.32
2110 5705 6.238842 CGGAGCAAAATGAATGGATCTACATT 60.239 38.462 0.00 0.00 43.36 2.71
2111 5706 5.240183 CGGAGCAAAATGAATGGATCTACAT 59.760 40.000 0.00 0.00 0.00 2.29
2112 5707 4.576053 CGGAGCAAAATGAATGGATCTACA 59.424 41.667 0.00 0.00 0.00 2.74
2113 5708 4.576463 ACGGAGCAAAATGAATGGATCTAC 59.424 41.667 0.00 0.00 0.00 2.59
2114 5709 4.780815 ACGGAGCAAAATGAATGGATCTA 58.219 39.130 0.00 0.00 0.00 1.98
2115 5710 3.624777 ACGGAGCAAAATGAATGGATCT 58.375 40.909 0.00 0.00 0.00 2.75
2116 5711 5.009010 ACATACGGAGCAAAATGAATGGATC 59.991 40.000 0.00 0.00 0.00 3.36
2117 5712 4.889409 ACATACGGAGCAAAATGAATGGAT 59.111 37.500 0.00 0.00 0.00 3.41
2118 5713 4.269183 ACATACGGAGCAAAATGAATGGA 58.731 39.130 0.00 0.00 0.00 3.41
2119 5714 4.637483 ACATACGGAGCAAAATGAATGG 57.363 40.909 0.00 0.00 0.00 3.16
2120 5715 6.363577 ACTACATACGGAGCAAAATGAATG 57.636 37.500 0.00 0.00 0.00 2.67
2121 5716 5.527582 GGACTACATACGGAGCAAAATGAAT 59.472 40.000 0.00 0.00 0.00 2.57
2122 5717 4.873827 GGACTACATACGGAGCAAAATGAA 59.126 41.667 0.00 0.00 0.00 2.57
2123 5718 4.081365 TGGACTACATACGGAGCAAAATGA 60.081 41.667 0.00 0.00 0.00 2.57
2124 5719 4.188462 TGGACTACATACGGAGCAAAATG 58.812 43.478 0.00 0.00 0.00 2.32
2125 5720 4.481368 TGGACTACATACGGAGCAAAAT 57.519 40.909 0.00 0.00 0.00 1.82
2126 5721 3.965379 TGGACTACATACGGAGCAAAA 57.035 42.857 0.00 0.00 0.00 2.44
2127 5722 3.704566 AGATGGACTACATACGGAGCAAA 59.295 43.478 0.00 0.00 40.72 3.68
2128 5723 3.296854 AGATGGACTACATACGGAGCAA 58.703 45.455 0.00 0.00 40.72 3.91
2129 5724 2.945456 AGATGGACTACATACGGAGCA 58.055 47.619 0.00 0.00 40.72 4.26
2130 5725 4.073549 ACTAGATGGACTACATACGGAGC 58.926 47.826 0.00 0.00 40.72 4.70
2131 5726 5.306394 TCACTAGATGGACTACATACGGAG 58.694 45.833 0.00 0.00 40.72 4.63
2132 5727 5.300411 TCACTAGATGGACTACATACGGA 57.700 43.478 0.00 0.00 40.72 4.69
2133 5728 6.387041 TTTCACTAGATGGACTACATACGG 57.613 41.667 0.00 0.00 40.72 4.02
2134 5729 7.877003 AGATTTCACTAGATGGACTACATACG 58.123 38.462 0.00 0.00 40.72 3.06
2135 5730 9.073475 AGAGATTTCACTAGATGGACTACATAC 57.927 37.037 0.00 0.00 40.72 2.39
2137 5732 9.821240 ATAGAGATTTCACTAGATGGACTACAT 57.179 33.333 0.00 0.00 44.18 2.29
2163 5758 8.689972 CCTCCGTTCCTAAAGTATAAGTCTTTA 58.310 37.037 0.00 0.00 36.65 1.85
2164 5759 7.364497 CCCTCCGTTCCTAAAGTATAAGTCTTT 60.364 40.741 0.00 0.00 38.45 2.52
2165 5760 6.097981 CCCTCCGTTCCTAAAGTATAAGTCTT 59.902 42.308 0.00 0.00 0.00 3.01
2166 5761 5.597594 CCCTCCGTTCCTAAAGTATAAGTCT 59.402 44.000 0.00 0.00 0.00 3.24
2167 5762 5.595952 TCCCTCCGTTCCTAAAGTATAAGTC 59.404 44.000 0.00 0.00 0.00 3.01
2168 5763 5.522641 TCCCTCCGTTCCTAAAGTATAAGT 58.477 41.667 0.00 0.00 0.00 2.24
2169 5764 5.597594 ACTCCCTCCGTTCCTAAAGTATAAG 59.402 44.000 0.00 0.00 0.00 1.73
2170 5765 5.522641 ACTCCCTCCGTTCCTAAAGTATAA 58.477 41.667 0.00 0.00 0.00 0.98
2171 5766 5.134725 ACTCCCTCCGTTCCTAAAGTATA 57.865 43.478 0.00 0.00 0.00 1.47
2172 5767 3.991683 ACTCCCTCCGTTCCTAAAGTAT 58.008 45.455 0.00 0.00 0.00 2.12
2173 5768 3.463048 ACTCCCTCCGTTCCTAAAGTA 57.537 47.619 0.00 0.00 0.00 2.24
2174 5769 2.322339 ACTCCCTCCGTTCCTAAAGT 57.678 50.000 0.00 0.00 0.00 2.66
2175 5770 2.098770 CGTACTCCCTCCGTTCCTAAAG 59.901 54.545 0.00 0.00 0.00 1.85
2176 5771 2.094675 CGTACTCCCTCCGTTCCTAAA 58.905 52.381 0.00 0.00 0.00 1.85
2177 5772 1.004745 ACGTACTCCCTCCGTTCCTAA 59.995 52.381 0.00 0.00 0.00 2.69
2178 5773 0.620556 ACGTACTCCCTCCGTTCCTA 59.379 55.000 0.00 0.00 0.00 2.94
2179 5774 0.620556 TACGTACTCCCTCCGTTCCT 59.379 55.000 0.00 0.00 36.12 3.36
2180 5775 0.735471 GTACGTACTCCCTCCGTTCC 59.265 60.000 18.47 0.00 36.12 3.62
2181 5776 0.375106 CGTACGTACTCCCTCCGTTC 59.625 60.000 22.55 0.00 36.12 3.95
2182 5777 0.321653 ACGTACGTACTCCCTCCGTT 60.322 55.000 21.41 0.00 36.12 4.44
2183 5778 0.741221 GACGTACGTACTCCCTCCGT 60.741 60.000 22.87 13.74 38.53 4.69
2184 5779 1.756375 CGACGTACGTACTCCCTCCG 61.756 65.000 22.87 13.94 37.22 4.63
2185 5780 2.009888 CGACGTACGTACTCCCTCC 58.990 63.158 22.87 5.09 37.22 4.30
2196 5791 1.076533 CAGTGGGCATGACGACGTAC 61.077 60.000 8.17 0.00 0.00 3.67
2197 5792 1.214325 CAGTGGGCATGACGACGTA 59.786 57.895 8.17 0.00 0.00 3.57
2198 5793 2.048222 CAGTGGGCATGACGACGT 60.048 61.111 8.17 0.00 0.00 4.34
2199 5794 1.354337 CTTCAGTGGGCATGACGACG 61.354 60.000 8.17 3.79 0.00 5.12
2200 5795 0.037326 TCTTCAGTGGGCATGACGAC 60.037 55.000 5.40 5.40 0.00 4.34
2201 5796 0.684535 TTCTTCAGTGGGCATGACGA 59.315 50.000 0.00 0.00 0.00 4.20
2202 5797 0.798776 GTTCTTCAGTGGGCATGACG 59.201 55.000 0.00 0.00 0.00 4.35
2203 5798 1.808945 CTGTTCTTCAGTGGGCATGAC 59.191 52.381 0.00 0.00 39.17 3.06
2204 5799 1.699083 TCTGTTCTTCAGTGGGCATGA 59.301 47.619 0.00 0.00 43.97 3.07
2209 5804 4.336889 TGTACTTCTGTTCTTCAGTGGG 57.663 45.455 0.00 0.00 43.97 4.61
2223 5818 6.925610 TGCCAGATTATGTCATTGTACTTC 57.074 37.500 0.00 0.00 0.00 3.01
2250 5845 5.591472 CCATCCAATTCCATCGTGCATATAT 59.409 40.000 0.00 0.00 0.00 0.86
2283 5878 2.104111 CCAGCCGGTATGAATGTTAGGA 59.896 50.000 1.90 0.00 0.00 2.94
2285 5880 2.104111 TCCCAGCCGGTATGAATGTTAG 59.896 50.000 1.90 0.00 0.00 2.34
2307 5909 8.523915 TTAATTAATCCTGCACTCATCACAAT 57.476 30.769 0.00 0.00 0.00 2.71
2312 5914 6.073548 CGGACTTAATTAATCCTGCACTCATC 60.074 42.308 17.34 0.00 0.00 2.92
2332 5934 0.753262 GACTATGTCATGGGCGGACT 59.247 55.000 0.88 0.00 36.26 3.85
2337 5939 2.611473 CGGATGAGACTATGTCATGGGC 60.611 54.545 0.88 0.00 34.69 5.36
2338 5940 2.630098 ACGGATGAGACTATGTCATGGG 59.370 50.000 0.88 0.00 34.69 4.00
2339 5941 3.305676 GGACGGATGAGACTATGTCATGG 60.306 52.174 0.00 0.00 34.69 3.66
2340 5942 3.571828 AGGACGGATGAGACTATGTCATG 59.428 47.826 0.00 0.00 34.69 3.07
2341 5943 3.838565 AGGACGGATGAGACTATGTCAT 58.161 45.455 0.46 0.00 37.36 3.06
2342 5944 3.298686 AGGACGGATGAGACTATGTCA 57.701 47.619 0.46 0.00 34.60 3.58
2343 5945 4.216687 CCTAAGGACGGATGAGACTATGTC 59.783 50.000 0.00 0.00 0.00 3.06
2344 5946 4.145807 CCTAAGGACGGATGAGACTATGT 58.854 47.826 0.00 0.00 0.00 2.29
2345 5947 3.057174 GCCTAAGGACGGATGAGACTATG 60.057 52.174 0.00 0.00 0.00 2.23
2346 5948 3.158676 GCCTAAGGACGGATGAGACTAT 58.841 50.000 0.00 0.00 0.00 2.12
2347 5949 2.092049 TGCCTAAGGACGGATGAGACTA 60.092 50.000 0.00 0.00 0.00 2.59
2348 5950 1.342076 TGCCTAAGGACGGATGAGACT 60.342 52.381 0.00 0.00 0.00 3.24
2349 5951 1.112113 TGCCTAAGGACGGATGAGAC 58.888 55.000 0.00 0.00 0.00 3.36
2350 5952 1.112113 GTGCCTAAGGACGGATGAGA 58.888 55.000 0.00 0.00 0.00 3.27
2351 5953 0.249073 CGTGCCTAAGGACGGATGAG 60.249 60.000 0.00 0.00 31.84 2.90
2352 5954 0.681887 TCGTGCCTAAGGACGGATGA 60.682 55.000 5.51 0.00 36.23 2.92
2353 5955 0.174845 TTCGTGCCTAAGGACGGATG 59.825 55.000 5.51 0.00 36.23 3.51
2354 5956 1.120530 ATTCGTGCCTAAGGACGGAT 58.879 50.000 5.51 0.00 36.23 4.18
2355 5957 1.406539 GTATTCGTGCCTAAGGACGGA 59.593 52.381 5.51 0.00 36.23 4.69
2356 5958 1.135527 TGTATTCGTGCCTAAGGACGG 59.864 52.381 5.51 0.00 36.23 4.79
2357 5959 2.572191 TGTATTCGTGCCTAAGGACG 57.428 50.000 0.00 0.00 36.91 4.79
2358 5960 3.592059 TGTTGTATTCGTGCCTAAGGAC 58.408 45.455 0.00 0.00 0.00 3.85
2359 5961 3.965379 TGTTGTATTCGTGCCTAAGGA 57.035 42.857 0.00 0.00 0.00 3.36
2360 5962 4.142687 CCTTTGTTGTATTCGTGCCTAAGG 60.143 45.833 0.00 0.00 0.00 2.69
2361 5963 4.142687 CCCTTTGTTGTATTCGTGCCTAAG 60.143 45.833 0.00 0.00 0.00 2.18
2362 5964 3.754323 CCCTTTGTTGTATTCGTGCCTAA 59.246 43.478 0.00 0.00 0.00 2.69
2363 5965 3.340034 CCCTTTGTTGTATTCGTGCCTA 58.660 45.455 0.00 0.00 0.00 3.93
2364 5966 2.159382 CCCTTTGTTGTATTCGTGCCT 58.841 47.619 0.00 0.00 0.00 4.75
2365 5967 1.402325 GCCCTTTGTTGTATTCGTGCC 60.402 52.381 0.00 0.00 0.00 5.01
2366 5968 1.727857 CGCCCTTTGTTGTATTCGTGC 60.728 52.381 0.00 0.00 0.00 5.34
2367 5969 1.533731 ACGCCCTTTGTTGTATTCGTG 59.466 47.619 0.00 0.00 0.00 4.35
2368 5970 1.533731 CACGCCCTTTGTTGTATTCGT 59.466 47.619 0.00 0.00 0.00 3.85
2369 5971 1.533731 ACACGCCCTTTGTTGTATTCG 59.466 47.619 0.00 0.00 0.00 3.34
2370 5972 3.636282 AACACGCCCTTTGTTGTATTC 57.364 42.857 0.00 0.00 35.82 1.75
2371 5973 3.491792 CCAAACACGCCCTTTGTTGTATT 60.492 43.478 0.00 0.00 37.26 1.89
2372 5974 2.035321 CCAAACACGCCCTTTGTTGTAT 59.965 45.455 0.00 0.00 37.26 2.29
2373 5975 1.405821 CCAAACACGCCCTTTGTTGTA 59.594 47.619 0.00 0.00 37.26 2.41
2374 5976 0.174617 CCAAACACGCCCTTTGTTGT 59.825 50.000 0.00 0.00 37.26 3.32
2375 5977 0.174617 ACCAAACACGCCCTTTGTTG 59.825 50.000 0.00 0.00 37.26 3.33
2376 5978 0.899019 AACCAAACACGCCCTTTGTT 59.101 45.000 0.00 0.00 38.88 2.83
2377 5979 0.174617 CAACCAAACACGCCCTTTGT 59.825 50.000 0.00 0.00 0.00 2.83
2378 5980 0.457851 TCAACCAAACACGCCCTTTG 59.542 50.000 0.00 0.00 0.00 2.77
2379 5981 1.339929 GATCAACCAAACACGCCCTTT 59.660 47.619 0.00 0.00 0.00 3.11
2380 5982 0.958822 GATCAACCAAACACGCCCTT 59.041 50.000 0.00 0.00 0.00 3.95
2381 5983 0.179004 TGATCAACCAAACACGCCCT 60.179 50.000 0.00 0.00 0.00 5.19
2382 5984 0.671251 TTGATCAACCAAACACGCCC 59.329 50.000 3.38 0.00 0.00 6.13
2383 5985 2.500509 TTTGATCAACCAAACACGCC 57.499 45.000 7.89 0.00 31.73 5.68
2384 5986 6.704512 ATAATTTTGATCAACCAAACACGC 57.295 33.333 7.89 0.00 35.95 5.34
2420 6022 7.148171 GGAGATGAAAATGACCTTTACAAGAGG 60.148 40.741 0.00 0.00 40.24 3.69
2421 6023 7.609532 AGGAGATGAAAATGACCTTTACAAGAG 59.390 37.037 0.00 0.00 0.00 2.85
2422 6024 7.461749 AGGAGATGAAAATGACCTTTACAAGA 58.538 34.615 0.00 0.00 0.00 3.02
2423 6025 7.609532 AGAGGAGATGAAAATGACCTTTACAAG 59.390 37.037 0.00 0.00 0.00 3.16
2424 6026 7.391554 CAGAGGAGATGAAAATGACCTTTACAA 59.608 37.037 0.00 0.00 0.00 2.41
2425 6027 6.881065 CAGAGGAGATGAAAATGACCTTTACA 59.119 38.462 0.00 0.00 0.00 2.41
2426 6028 6.317391 CCAGAGGAGATGAAAATGACCTTTAC 59.683 42.308 0.00 0.00 0.00 2.01
2427 6029 6.012508 ACCAGAGGAGATGAAAATGACCTTTA 60.013 38.462 0.00 0.00 0.00 1.85
2428 6030 5.222213 ACCAGAGGAGATGAAAATGACCTTT 60.222 40.000 0.00 0.00 0.00 3.11
2429 6031 4.290722 ACCAGAGGAGATGAAAATGACCTT 59.709 41.667 0.00 0.00 0.00 3.50
2430 6032 3.848975 ACCAGAGGAGATGAAAATGACCT 59.151 43.478 0.00 0.00 0.00 3.85
2431 6033 3.944015 CACCAGAGGAGATGAAAATGACC 59.056 47.826 0.00 0.00 0.00 4.02
2432 6034 3.944015 CCACCAGAGGAGATGAAAATGAC 59.056 47.826 0.00 0.00 0.00 3.06
2433 6035 3.588842 ACCACCAGAGGAGATGAAAATGA 59.411 43.478 0.00 0.00 0.00 2.57
2434 6036 3.693085 CACCACCAGAGGAGATGAAAATG 59.307 47.826 0.00 0.00 0.00 2.32
2435 6037 3.588842 TCACCACCAGAGGAGATGAAAAT 59.411 43.478 0.00 0.00 0.00 1.82
2436 6038 2.978978 TCACCACCAGAGGAGATGAAAA 59.021 45.455 0.00 0.00 0.00 2.29
2437 6039 2.303022 GTCACCACCAGAGGAGATGAAA 59.697 50.000 0.00 0.00 30.94 2.69
2438 6040 1.902508 GTCACCACCAGAGGAGATGAA 59.097 52.381 0.00 0.00 30.94 2.57
2439 6041 1.203174 TGTCACCACCAGAGGAGATGA 60.203 52.381 0.00 0.00 30.94 2.92
2440 6042 1.269958 TGTCACCACCAGAGGAGATG 58.730 55.000 0.00 0.00 30.94 2.90
2441 6043 1.905215 CTTGTCACCACCAGAGGAGAT 59.095 52.381 0.00 0.00 30.94 2.75
2442 6044 1.342074 CTTGTCACCACCAGAGGAGA 58.658 55.000 0.00 0.00 0.00 3.71
2443 6045 1.051812 ACTTGTCACCACCAGAGGAG 58.948 55.000 0.00 0.00 0.00 3.69
2444 6046 0.758734 CACTTGTCACCACCAGAGGA 59.241 55.000 0.00 0.00 0.00 3.71
2445 6047 0.250467 CCACTTGTCACCACCAGAGG 60.250 60.000 0.00 0.00 0.00 3.69
2446 6048 0.758734 TCCACTTGTCACCACCAGAG 59.241 55.000 0.00 0.00 0.00 3.35
2447 6049 1.134220 GTTCCACTTGTCACCACCAGA 60.134 52.381 0.00 0.00 0.00 3.86
2448 6050 1.308998 GTTCCACTTGTCACCACCAG 58.691 55.000 0.00 0.00 0.00 4.00
2449 6051 0.462937 CGTTCCACTTGTCACCACCA 60.463 55.000 0.00 0.00 0.00 4.17
2450 6052 1.782028 GCGTTCCACTTGTCACCACC 61.782 60.000 0.00 0.00 0.00 4.61
2451 6053 1.092921 TGCGTTCCACTTGTCACCAC 61.093 55.000 0.00 0.00 0.00 4.16
2452 6054 0.179032 ATGCGTTCCACTTGTCACCA 60.179 50.000 0.00 0.00 0.00 4.17
2453 6055 0.238289 CATGCGTTCCACTTGTCACC 59.762 55.000 0.00 0.00 0.00 4.02
2454 6056 0.944386 ACATGCGTTCCACTTGTCAC 59.056 50.000 0.00 0.00 0.00 3.67
2455 6057 0.943673 CACATGCGTTCCACTTGTCA 59.056 50.000 0.00 0.00 0.00 3.58
2456 6058 0.944386 ACACATGCGTTCCACTTGTC 59.056 50.000 0.00 0.00 0.00 3.18
2457 6059 0.662619 CACACATGCGTTCCACTTGT 59.337 50.000 0.00 0.00 0.00 3.16
2458 6060 0.662619 ACACACATGCGTTCCACTTG 59.337 50.000 0.00 0.00 0.00 3.16
2459 6061 0.944386 GACACACATGCGTTCCACTT 59.056 50.000 0.00 0.00 0.00 3.16
2460 6062 0.179059 TGACACACATGCGTTCCACT 60.179 50.000 0.00 0.00 0.00 4.00
2461 6063 0.041312 GTGACACACATGCGTTCCAC 60.041 55.000 0.00 0.00 34.08 4.02
2462 6064 0.179059 AGTGACACACATGCGTTCCA 60.179 50.000 8.59 0.00 36.74 3.53
2463 6065 0.944386 AAGTGACACACATGCGTTCC 59.056 50.000 8.59 0.00 36.74 3.62
2464 6066 1.330521 ACAAGTGACACACATGCGTTC 59.669 47.619 8.59 0.00 36.67 3.95
2465 6067 1.330521 GACAAGTGACACACATGCGTT 59.669 47.619 8.59 0.00 36.67 4.84
2466 6068 0.937304 GACAAGTGACACACATGCGT 59.063 50.000 8.59 0.00 36.67 5.24
2467 6069 0.111134 CGACAAGTGACACACATGCG 60.111 55.000 8.59 8.02 36.67 4.73
2468 6070 0.384725 GCGACAAGTGACACACATGC 60.385 55.000 8.59 1.39 36.67 4.06
2469 6071 0.936600 TGCGACAAGTGACACACATG 59.063 50.000 8.59 6.44 38.74 3.21
2470 6072 1.330521 GTTGCGACAAGTGACACACAT 59.669 47.619 8.59 0.00 36.74 3.21
2471 6073 0.724549 GTTGCGACAAGTGACACACA 59.275 50.000 8.59 0.00 36.74 3.72
2472 6074 1.006832 AGTTGCGACAAGTGACACAC 58.993 50.000 8.59 0.00 34.10 3.82
2473 6075 2.100087 TCTAGTTGCGACAAGTGACACA 59.900 45.455 8.59 0.00 0.00 3.72
2474 6076 2.726760 CTCTAGTTGCGACAAGTGACAC 59.273 50.000 6.90 0.00 0.00 3.67
2475 6077 2.621526 TCTCTAGTTGCGACAAGTGACA 59.378 45.455 6.90 0.00 0.00 3.58
2476 6078 3.238441 CTCTCTAGTTGCGACAAGTGAC 58.762 50.000 6.90 0.00 0.00 3.67
2477 6079 2.351835 GCTCTCTAGTTGCGACAAGTGA 60.352 50.000 6.90 0.00 0.00 3.41
2478 6080 1.989165 GCTCTCTAGTTGCGACAAGTG 59.011 52.381 6.90 3.30 0.00 3.16
2479 6081 1.067495 GGCTCTCTAGTTGCGACAAGT 60.067 52.381 6.90 5.48 0.00 3.16
2480 6082 1.203523 AGGCTCTCTAGTTGCGACAAG 59.796 52.381 6.90 0.92 0.00 3.16
2481 6083 1.257743 AGGCTCTCTAGTTGCGACAA 58.742 50.000 6.90 0.00 0.00 3.18
2482 6084 1.202582 GAAGGCTCTCTAGTTGCGACA 59.797 52.381 6.90 0.00 0.00 4.35
2483 6085 1.474879 AGAAGGCTCTCTAGTTGCGAC 59.525 52.381 0.00 0.00 0.00 5.19
2484 6086 1.746220 GAGAAGGCTCTCTAGTTGCGA 59.254 52.381 0.00 0.00 44.22 5.10
2485 6087 1.532921 CGAGAAGGCTCTCTAGTTGCG 60.533 57.143 10.73 2.94 45.26 4.85
2486 6088 1.474879 ACGAGAAGGCTCTCTAGTTGC 59.525 52.381 10.73 0.00 45.26 4.17
2487 6089 5.508200 AATACGAGAAGGCTCTCTAGTTG 57.492 43.478 14.01 2.79 45.26 3.16
2488 6090 6.532988 AAAATACGAGAAGGCTCTCTAGTT 57.467 37.500 14.01 8.06 45.26 2.24
2489 6091 6.532988 AAAAATACGAGAAGGCTCTCTAGT 57.467 37.500 13.55 13.55 45.26 2.57
2509 6111 1.227704 TCCCTGCGCGTGAGAAAAA 60.228 52.632 8.43 0.00 0.00 1.94
2510 6112 1.667830 CTCCCTGCGCGTGAGAAAA 60.668 57.895 8.43 0.00 0.00 2.29
2511 6113 1.888436 ATCTCCCTGCGCGTGAGAAA 61.888 55.000 21.90 6.10 38.53 2.52
2512 6114 2.351244 ATCTCCCTGCGCGTGAGAA 61.351 57.895 21.90 9.96 38.53 2.87
2513 6115 2.755876 ATCTCCCTGCGCGTGAGA 60.756 61.111 20.80 20.80 39.31 3.27
2514 6116 2.563050 TTCATCTCCCTGCGCGTGAG 62.563 60.000 8.43 12.79 0.00 3.51
2515 6117 1.960040 ATTCATCTCCCTGCGCGTGA 61.960 55.000 8.43 0.00 0.00 4.35
2516 6118 1.522355 ATTCATCTCCCTGCGCGTG 60.522 57.895 8.43 0.36 0.00 5.34
2517 6119 1.522355 CATTCATCTCCCTGCGCGT 60.522 57.895 8.43 0.00 0.00 6.01
2518 6120 2.249535 CCATTCATCTCCCTGCGCG 61.250 63.158 0.00 0.00 0.00 6.86
2519 6121 1.895707 CCCATTCATCTCCCTGCGC 60.896 63.158 0.00 0.00 0.00 6.09
2520 6122 0.107017 AACCCATTCATCTCCCTGCG 60.107 55.000 0.00 0.00 0.00 5.18
2521 6123 2.149973 AAACCCATTCATCTCCCTGC 57.850 50.000 0.00 0.00 0.00 4.85
2522 6124 5.658190 ACAAATAAACCCATTCATCTCCCTG 59.342 40.000 0.00 0.00 0.00 4.45
2523 6125 5.658190 CACAAATAAACCCATTCATCTCCCT 59.342 40.000 0.00 0.00 0.00 4.20
2524 6126 5.422012 ACACAAATAAACCCATTCATCTCCC 59.578 40.000 0.00 0.00 0.00 4.30
2525 6127 6.530019 ACACAAATAAACCCATTCATCTCC 57.470 37.500 0.00 0.00 0.00 3.71
2526 6128 8.831715 AAAACACAAATAAACCCATTCATCTC 57.168 30.769 0.00 0.00 0.00 2.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.