Multiple sequence alignment - TraesCS4A01G325400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G325400 chr4A 100.000 5419 0 0 1 5419 613272776 613267358 0.000000e+00 10008.0
1 TraesCS4A01G325400 chr4A 80.676 621 116 4 1565 2183 649145365 649145983 3.800000e-131 479.0
2 TraesCS4A01G325400 chr4A 74.446 767 156 33 2221 2965 649146251 649146999 1.480000e-75 294.0
3 TraesCS4A01G325400 chr4A 92.857 98 4 3 409 503 613272439 613272342 7.320000e-29 139.0
4 TraesCS4A01G325400 chr4A 73.913 184 37 8 247 424 613272485 613272307 4.530000e-06 63.9
5 TraesCS4A01G325400 chr4A 73.913 184 37 8 292 470 613272530 613272353 4.530000e-06 63.9
6 TraesCS4A01G325400 chr4A 95.000 40 2 0 455 494 613272414 613272375 4.530000e-06 63.9
7 TraesCS4A01G325400 chr5D 93.465 1867 82 15 1180 3011 559720052 559718191 0.000000e+00 2736.0
8 TraesCS4A01G325400 chr5D 88.988 1008 109 2 4412 5418 559678916 559677910 0.000000e+00 1245.0
9 TraesCS4A01G325400 chr5D 94.639 429 20 2 3277 3702 559718106 559717678 0.000000e+00 662.0
10 TraesCS4A01G325400 chr5D 84.314 408 50 13 2 401 385799870 385800271 2.370000e-103 387.0
11 TraesCS4A01G325400 chr5D 83.824 408 52 13 2 401 274755685 274756086 5.120000e-100 375.0
12 TraesCS4A01G325400 chr5D 83.750 400 51 13 2 393 274748219 274748612 3.080000e-97 366.0
13 TraesCS4A01G325400 chr5D 80.597 469 50 19 405 847 559721019 559720566 1.880000e-84 324.0
14 TraesCS4A01G325400 chr5D 95.092 163 7 1 1059 1220 559720555 559720393 6.970000e-64 255.0
15 TraesCS4A01G325400 chr5D 92.265 181 11 1 3697 3874 559712703 559712523 2.510000e-63 254.0
16 TraesCS4A01G325400 chr5D 93.333 105 7 0 3027 3131 559718208 559718104 7.270000e-34 156.0
17 TraesCS4A01G325400 chr5D 93.651 63 3 1 3541 3603 559711749 559711688 5.780000e-15 93.5
18 TraesCS4A01G325400 chr5B 94.776 1493 60 6 1522 3011 693982211 693980734 0.000000e+00 2309.0
19 TraesCS4A01G325400 chr5B 85.332 1309 152 18 4129 5419 693979686 693978400 0.000000e+00 1317.0
20 TraesCS4A01G325400 chr5B 82.789 337 32 9 3487 3823 693980345 693980035 1.490000e-70 278.0
21 TraesCS4A01G325400 chr5B 96.396 111 4 0 3027 3137 693980751 693980641 3.330000e-42 183.0
22 TraesCS4A01G325400 chr6B 90.711 1378 117 7 4047 5419 20147231 20148602 0.000000e+00 1825.0
23 TraesCS4A01G325400 chr6B 94.656 786 30 3 3287 4060 20146426 20147211 0.000000e+00 1208.0
24 TraesCS4A01G325400 chr6B 94.394 660 32 3 2187 2845 20145265 20145920 0.000000e+00 1009.0
25 TraesCS4A01G325400 chr6B 89.060 777 56 17 493 1243 20141298 20142071 0.000000e+00 937.0
26 TraesCS4A01G325400 chr6B 93.607 610 31 6 1180 1785 20142422 20143027 0.000000e+00 904.0
27 TraesCS4A01G325400 chr6B 96.577 409 14 0 1781 2189 20144219 20144627 0.000000e+00 678.0
28 TraesCS4A01G325400 chr6B 96.386 83 3 0 2840 2922 20146343 20146425 2.630000e-28 137.0
29 TraesCS4A01G325400 chr6B 100.000 29 0 0 3440 3468 20146667 20146695 3.000000e-03 54.7
30 TraesCS4A01G325400 chr7B 89.075 1016 106 3 4409 5419 622525406 622526421 0.000000e+00 1256.0
31 TraesCS4A01G325400 chr7B 80.629 604 111 6 1583 2183 2563596 2562996 3.820000e-126 462.0
32 TraesCS4A01G325400 chr7B 81.129 620 72 22 4081 4675 622523539 622524138 6.400000e-124 455.0
33 TraesCS4A01G325400 chr7B 74.149 793 172 28 2224 2997 2562732 2561954 1.140000e-76 298.0
34 TraesCS4A01G325400 chr2B 81.095 603 110 4 1583 2183 779456841 779456241 3.800000e-131 479.0
35 TraesCS4A01G325400 chr2B 91.515 165 13 1 3135 3299 366017518 366017681 5.460000e-55 226.0
36 TraesCS4A01G325400 chr2D 80.763 603 111 5 1583 2183 635312863 635312264 2.960000e-127 466.0
37 TraesCS4A01G325400 chr2D 78.184 683 80 42 6 680 563001904 563001283 6.630000e-99 372.0
38 TraesCS4A01G325400 chr2D 83.538 407 49 16 6 401 517671652 517672051 1.110000e-96 364.0
39 TraesCS4A01G325400 chr2D 83.154 279 36 8 405 680 452411392 452411122 1.510000e-60 244.0
40 TraesCS4A01G325400 chr2D 91.071 168 14 1 3135 3302 296364210 296364044 5.460000e-55 226.0
41 TraesCS4A01G325400 chr7A 80.064 622 118 6 1565 2183 41626695 41627313 1.780000e-124 457.0
42 TraesCS4A01G325400 chr7A 80.128 624 114 7 1565 2183 41747055 41747673 1.780000e-124 457.0
43 TraesCS4A01G325400 chr7A 73.651 797 172 31 2221 2994 41627584 41628365 1.920000e-69 274.0
44 TraesCS4A01G325400 chr7A 73.377 770 169 28 2245 2994 41620630 41621383 2.510000e-63 254.0
45 TraesCS4A01G325400 chr6D 83.578 408 53 13 2 401 143513961 143513560 2.380000e-98 370.0
46 TraesCS4A01G325400 chr6D 83.394 277 25 11 409 680 3226268 3226008 2.520000e-58 237.0
47 TraesCS4A01G325400 chr6D 81.786 280 39 10 406 680 290789119 290789391 1.960000e-54 224.0
48 TraesCS4A01G325400 chr6D 80.272 294 45 10 406 693 11473837 11474123 5.500000e-50 209.0
49 TraesCS4A01G325400 chr3B 83.415 410 52 15 2 401 773503582 773503985 3.080000e-97 366.0
50 TraesCS4A01G325400 chr3B 83.374 409 54 13 2 401 773511054 773511457 3.080000e-97 366.0
51 TraesCS4A01G325400 chr3B 92.216 167 10 3 3136 3300 552226568 552226403 3.260000e-57 233.0
52 TraesCS4A01G325400 chr3B 81.655 278 39 7 405 680 706740345 706740612 2.540000e-53 220.0
53 TraesCS4A01G325400 chr7D 83.292 407 56 12 2 401 183236826 183237227 1.110000e-96 364.0
54 TraesCS4A01G325400 chr7D 74.801 754 158 27 2224 2961 42082942 42082205 1.470000e-80 311.0
55 TraesCS4A01G325400 chr7D 74.687 719 156 20 2261 2965 42214117 42214823 4.100000e-76 296.0
56 TraesCS4A01G325400 chr7D 86.802 197 20 6 495 687 599870711 599870517 1.180000e-51 215.0
57 TraesCS4A01G325400 chr3D 83.333 408 54 13 2 401 16185267 16184866 1.110000e-96 364.0
58 TraesCS4A01G325400 chr3D 91.617 167 13 1 3131 3297 87925996 87926161 4.220000e-56 230.0
59 TraesCS4A01G325400 chr3D 92.025 163 11 1 3135 3297 539119631 539119791 1.520000e-55 228.0
60 TraesCS4A01G325400 chr4D 89.773 176 18 0 3129 3304 21147900 21147725 5.460000e-55 226.0
61 TraesCS4A01G325400 chr3A 89.944 179 12 5 3123 3297 585298157 585297981 5.460000e-55 226.0
62 TraesCS4A01G325400 chr1D 82.437 279 29 11 406 680 3841063 3841325 5.460000e-55 226.0
63 TraesCS4A01G325400 chr2A 89.773 176 14 4 3131 3305 184561319 184561147 7.060000e-54 222.0
64 TraesCS4A01G325400 chr1B 87.179 195 24 1 3105 3299 521219568 521219375 2.540000e-53 220.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G325400 chr4A 613267358 613272776 5418 True 2067.7400 10008 87.136600 1 5419 5 chr4A.!!$R1 5418
1 TraesCS4A01G325400 chr4A 649145365 649146999 1634 False 386.5000 479 77.561000 1565 2965 2 chr4A.!!$F1 1400
2 TraesCS4A01G325400 chr5D 559677910 559678916 1006 True 1245.0000 1245 88.988000 4412 5418 1 chr5D.!!$R1 1006
3 TraesCS4A01G325400 chr5D 559717678 559721019 3341 True 826.6000 2736 91.425200 405 3702 5 chr5D.!!$R3 3297
4 TraesCS4A01G325400 chr5B 693978400 693982211 3811 True 1021.7500 2309 89.823250 1522 5419 4 chr5B.!!$R1 3897
5 TraesCS4A01G325400 chr6B 20141298 20148602 7304 False 844.0875 1825 94.423875 493 5419 8 chr6B.!!$F1 4926
6 TraesCS4A01G325400 chr7B 622523539 622526421 2882 False 855.5000 1256 85.102000 4081 5419 2 chr7B.!!$F1 1338
7 TraesCS4A01G325400 chr7B 2561954 2563596 1642 True 380.0000 462 77.389000 1583 2997 2 chr7B.!!$R1 1414
8 TraesCS4A01G325400 chr2B 779456241 779456841 600 True 479.0000 479 81.095000 1583 2183 1 chr2B.!!$R1 600
9 TraesCS4A01G325400 chr2D 635312264 635312863 599 True 466.0000 466 80.763000 1583 2183 1 chr2D.!!$R4 600
10 TraesCS4A01G325400 chr2D 563001283 563001904 621 True 372.0000 372 78.184000 6 680 1 chr2D.!!$R3 674
11 TraesCS4A01G325400 chr7A 41747055 41747673 618 False 457.0000 457 80.128000 1565 2183 1 chr7A.!!$F2 618
12 TraesCS4A01G325400 chr7A 41626695 41628365 1670 False 365.5000 457 76.857500 1565 2994 2 chr7A.!!$F3 1429
13 TraesCS4A01G325400 chr7A 41620630 41621383 753 False 254.0000 254 73.377000 2245 2994 1 chr7A.!!$F1 749
14 TraesCS4A01G325400 chr7D 42082205 42082942 737 True 311.0000 311 74.801000 2224 2961 1 chr7D.!!$R1 737
15 TraesCS4A01G325400 chr7D 42214117 42214823 706 False 296.0000 296 74.687000 2261 2965 1 chr7D.!!$F1 704

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
318 322 0.106149 GGGTTGTCTGAGTGACCGTT 59.894 55.0 0.00 0.0 44.75 4.44 F
355 359 0.108898 CTCCTGAAGAGCTGTCCGTG 60.109 60.0 0.00 0.0 35.31 4.94 F
361 365 0.109086 AAGAGCTGTCCGTGACATCG 60.109 55.0 0.00 0.0 41.94 3.84 F
2023 3718 0.113190 CCCTGGCCTGGAAAACTTCT 59.887 55.0 29.21 0.0 0.00 2.85 F
3660 6791 0.036010 CATCAGTGAGGAGGCGGTTT 60.036 55.0 0.00 0.0 0.00 3.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1579 2078 0.388907 CCTGCGCCCACAATCAAAAG 60.389 55.000 4.18 0.00 0.00 2.27 R
2122 3817 1.629043 TGAGAAGCAAGGTCGTAGGT 58.371 50.000 0.00 0.00 0.00 3.08 R
2419 4999 1.416401 GACTTCAGGACAAGTGGACCA 59.584 52.381 0.00 0.00 36.71 4.02 R
3852 6985 0.185901 ATGTGAACAGCCTGGGTTGT 59.814 50.000 3.29 3.29 41.20 3.32 R
4959 9780 0.030504 TGCACACAGCCAACATTTCG 59.969 50.000 0.00 0.00 44.83 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 1.892474 GAGAAGCTCTCCACACTCACT 59.108 52.381 0.00 0.00 37.55 3.41
61 62 4.774726 ACTCACTCCAACTCTCATACACAT 59.225 41.667 0.00 0.00 0.00 3.21
68 69 2.569059 ACTCTCATACACATGCCATGC 58.431 47.619 4.17 0.00 31.73 4.06
87 88 4.333913 TGCATGATCTAGCTTTCTCTCC 57.666 45.455 0.00 0.00 0.00 3.71
89 90 3.324556 GCATGATCTAGCTTTCTCTCCCT 59.675 47.826 0.00 0.00 0.00 4.20
91 92 4.256983 TGATCTAGCTTTCTCTCCCTCA 57.743 45.455 0.00 0.00 0.00 3.86
92 93 4.214310 TGATCTAGCTTTCTCTCCCTCAG 58.786 47.826 0.00 0.00 0.00 3.35
93 94 4.079500 TGATCTAGCTTTCTCTCCCTCAGA 60.080 45.833 0.00 0.00 0.00 3.27
94 95 4.534647 TCTAGCTTTCTCTCCCTCAGAT 57.465 45.455 0.00 0.00 0.00 2.90
105 109 7.502060 TCTCTCCCTCAGATGAAATAGTTTT 57.498 36.000 0.00 0.00 0.00 2.43
108 112 6.881065 TCTCCCTCAGATGAAATAGTTTTGTG 59.119 38.462 0.00 0.00 0.00 3.33
114 118 4.396166 AGATGAAATAGTTTTGTGGAGCCG 59.604 41.667 0.00 0.00 0.00 5.52
133 137 2.778299 CGAAAGGTTGTCTGGATTCCA 58.222 47.619 5.05 5.05 0.00 3.53
134 138 3.146066 CGAAAGGTTGTCTGGATTCCAA 58.854 45.455 6.88 0.00 30.80 3.53
138 142 2.711009 AGGTTGTCTGGATTCCAACAGA 59.289 45.455 6.88 0.00 40.10 3.41
144 148 5.935945 TGTCTGGATTCCAACAGAAACTAA 58.064 37.500 6.88 0.00 44.53 2.24
147 151 7.505585 TGTCTGGATTCCAACAGAAACTAATTT 59.494 33.333 6.88 0.00 44.53 1.82
155 159 4.499037 ACAGAAACTAATTTTGGACGGC 57.501 40.909 0.00 0.00 0.00 5.68
173 177 1.289380 CGAAGCCCTACCGGATAGC 59.711 63.158 9.46 5.30 0.00 2.97
181 185 1.399714 CTACCGGATAGCTGACACCA 58.600 55.000 9.46 0.00 0.00 4.17
212 216 0.534652 CCCCGTAGAGAGGTCGTAGG 60.535 65.000 0.00 0.00 0.00 3.18
219 223 2.563702 AGAGAGGTCGTAGGTTCGATC 58.436 52.381 0.00 0.00 41.78 3.69
225 229 2.347755 GGTCGTAGGTTCGATCTTTTGC 59.652 50.000 0.00 0.00 41.78 3.68
227 231 2.232941 TCGTAGGTTCGATCTTTTGCCT 59.767 45.455 0.00 0.00 34.85 4.75
228 232 2.348666 CGTAGGTTCGATCTTTTGCCTG 59.651 50.000 0.00 0.00 0.00 4.85
229 233 2.859165 AGGTTCGATCTTTTGCCTGA 57.141 45.000 0.00 0.00 0.00 3.86
230 234 2.704572 AGGTTCGATCTTTTGCCTGAG 58.295 47.619 0.00 0.00 0.00 3.35
231 235 1.740025 GGTTCGATCTTTTGCCTGAGG 59.260 52.381 0.00 0.00 0.00 3.86
232 236 1.740025 GTTCGATCTTTTGCCTGAGGG 59.260 52.381 0.00 0.00 0.00 4.30
233 237 0.253044 TCGATCTTTTGCCTGAGGGG 59.747 55.000 0.00 0.00 38.36 4.79
244 248 3.003173 TGAGGGGCTGTTCGAGGG 61.003 66.667 0.00 0.00 0.00 4.30
270 274 1.079750 GAGGGCTGTTCGAGTGACC 60.080 63.158 0.00 0.00 0.00 4.02
272 276 2.338984 GGCTGTTCGAGTGACCGT 59.661 61.111 0.00 0.00 0.00 4.83
281 285 0.728466 CGAGTGACCGTCCGAGTTTC 60.728 60.000 0.00 0.00 0.00 2.78
282 286 0.597072 GAGTGACCGTCCGAGTTTCT 59.403 55.000 0.00 0.00 0.00 2.52
283 287 0.314302 AGTGACCGTCCGAGTTTCTG 59.686 55.000 0.00 0.00 0.00 3.02
284 288 0.313043 GTGACCGTCCGAGTTTCTGA 59.687 55.000 0.00 0.00 0.00 3.27
286 290 0.879765 GACCGTCCGAGTTTCTGAGA 59.120 55.000 0.00 0.00 0.00 3.27
287 291 0.882474 ACCGTCCGAGTTTCTGAGAG 59.118 55.000 0.00 0.00 0.00 3.20
288 292 0.882474 CCGTCCGAGTTTCTGAGAGT 59.118 55.000 0.00 0.00 0.00 3.24
289 293 1.401670 CCGTCCGAGTTTCTGAGAGTG 60.402 57.143 0.00 0.00 0.00 3.51
290 294 1.401670 CGTCCGAGTTTCTGAGAGTGG 60.402 57.143 0.00 0.00 0.00 4.00
292 296 0.605589 CCGAGTTTCTGAGAGTGGCT 59.394 55.000 0.00 0.00 0.00 4.75
293 297 1.403514 CCGAGTTTCTGAGAGTGGCTC 60.404 57.143 0.00 0.00 44.21 4.70
294 298 1.403514 CGAGTTTCTGAGAGTGGCTCC 60.404 57.143 0.00 0.00 43.26 4.70
295 299 1.899142 GAGTTTCTGAGAGTGGCTCCT 59.101 52.381 0.00 0.00 43.26 3.69
302 306 0.907230 GAGAGTGGCTCCTGAAGGGT 60.907 60.000 0.00 0.00 37.69 4.34
307 311 0.768221 TGGCTCCTGAAGGGTTGTCT 60.768 55.000 0.00 0.00 36.25 3.41
318 322 0.106149 GGGTTGTCTGAGTGACCGTT 59.894 55.000 0.00 0.00 44.75 4.44
319 323 1.474498 GGGTTGTCTGAGTGACCGTTT 60.474 52.381 0.00 0.00 44.75 3.60
322 326 2.933906 GTTGTCTGAGTGACCGTTTGAA 59.066 45.455 0.00 0.00 44.75 2.69
324 328 3.804036 TGTCTGAGTGACCGTTTGAATT 58.196 40.909 0.00 0.00 44.75 2.17
327 331 4.511826 GTCTGAGTGACCGTTTGAATTTCT 59.488 41.667 0.00 0.00 39.69 2.52
328 332 4.511454 TCTGAGTGACCGTTTGAATTTCTG 59.489 41.667 0.00 0.00 0.00 3.02
329 333 4.447290 TGAGTGACCGTTTGAATTTCTGA 58.553 39.130 0.00 0.00 0.00 3.27
331 335 4.703897 AGTGACCGTTTGAATTTCTGAGA 58.296 39.130 0.00 0.00 0.00 3.27
332 336 4.752101 AGTGACCGTTTGAATTTCTGAGAG 59.248 41.667 0.00 0.00 0.00 3.20
333 337 4.511826 GTGACCGTTTGAATTTCTGAGAGT 59.488 41.667 0.00 0.00 0.00 3.24
334 338 4.511454 TGACCGTTTGAATTTCTGAGAGTG 59.489 41.667 0.00 0.00 0.00 3.51
335 339 3.815401 ACCGTTTGAATTTCTGAGAGTGG 59.185 43.478 0.00 0.00 0.00 4.00
336 340 3.365364 CCGTTTGAATTTCTGAGAGTGGC 60.365 47.826 0.00 0.00 0.00 5.01
337 341 3.499918 CGTTTGAATTTCTGAGAGTGGCT 59.500 43.478 0.00 0.00 0.00 4.75
338 342 4.377841 CGTTTGAATTTCTGAGAGTGGCTC 60.378 45.833 0.00 0.00 44.21 4.70
339 343 3.340814 TGAATTTCTGAGAGTGGCTCC 57.659 47.619 0.00 0.00 43.26 4.70
340 344 2.909006 TGAATTTCTGAGAGTGGCTCCT 59.091 45.455 0.00 0.00 43.26 3.69
341 345 3.269178 GAATTTCTGAGAGTGGCTCCTG 58.731 50.000 0.00 0.00 43.26 3.86
342 346 2.015456 TTTCTGAGAGTGGCTCCTGA 57.985 50.000 0.00 0.00 43.26 3.86
343 347 2.015456 TTCTGAGAGTGGCTCCTGAA 57.985 50.000 0.00 0.00 43.26 3.02
344 348 1.554836 TCTGAGAGTGGCTCCTGAAG 58.445 55.000 0.00 0.00 43.26 3.02
345 349 1.076187 TCTGAGAGTGGCTCCTGAAGA 59.924 52.381 0.00 0.00 43.26 2.87
346 350 1.477700 CTGAGAGTGGCTCCTGAAGAG 59.522 57.143 0.00 0.00 46.29 2.85
354 358 2.271940 CTCCTGAAGAGCTGTCCGT 58.728 57.895 0.00 0.00 35.31 4.69
355 359 0.108898 CTCCTGAAGAGCTGTCCGTG 60.109 60.000 0.00 0.00 35.31 4.94
356 360 0.539669 TCCTGAAGAGCTGTCCGTGA 60.540 55.000 0.00 0.00 0.00 4.35
357 361 0.389166 CCTGAAGAGCTGTCCGTGAC 60.389 60.000 0.00 0.00 0.00 3.67
358 362 0.315251 CTGAAGAGCTGTCCGTGACA 59.685 55.000 0.00 6.57 40.50 3.58
359 363 0.969149 TGAAGAGCTGTCCGTGACAT 59.031 50.000 0.00 0.00 41.94 3.06
360 364 1.067565 TGAAGAGCTGTCCGTGACATC 60.068 52.381 0.00 4.03 41.94 3.06
361 365 0.109086 AAGAGCTGTCCGTGACATCG 60.109 55.000 0.00 0.00 41.94 3.84
362 366 1.213013 GAGCTGTCCGTGACATCGT 59.787 57.895 0.00 0.00 41.94 3.73
363 367 0.798771 GAGCTGTCCGTGACATCGTC 60.799 60.000 0.00 0.00 41.94 4.20
364 368 1.805945 GCTGTCCGTGACATCGTCC 60.806 63.158 7.11 0.00 41.94 4.79
365 369 1.514228 CTGTCCGTGACATCGTCCG 60.514 63.158 7.11 0.00 41.94 4.79
366 370 1.918868 CTGTCCGTGACATCGTCCGA 61.919 60.000 7.11 0.00 41.94 4.55
367 371 1.226323 GTCCGTGACATCGTCCGAG 60.226 63.158 0.00 0.00 31.51 4.63
368 372 2.102357 CCGTGACATCGTCCGAGG 59.898 66.667 0.00 0.00 31.51 4.63
369 373 2.102357 CGTGACATCGTCCGAGGG 59.898 66.667 6.30 0.00 31.51 4.30
370 374 2.404186 CGTGACATCGTCCGAGGGA 61.404 63.158 6.30 0.00 31.51 4.20
379 383 2.360852 TCCGAGGGACTGTCCGAC 60.361 66.667 19.98 14.64 41.55 4.79
380 384 3.450115 CCGAGGGACTGTCCGACC 61.450 72.222 19.98 10.52 41.55 4.79
381 385 3.812019 CGAGGGACTGTCCGACCG 61.812 72.222 19.98 17.56 41.55 4.79
385 389 3.692406 GGACTGTCCGACCGCCTT 61.692 66.667 11.71 0.00 0.00 4.35
403 407 4.452733 CCGAAGGCCTGTCCGACC 62.453 72.222 19.97 0.00 46.14 4.79
429 453 1.296715 GAAGGCCTGTCCGTGACAT 59.703 57.895 5.69 0.00 41.94 3.06
434 458 1.514228 CCTGTCCGTGACATCGTCG 60.514 63.158 7.11 0.00 41.94 5.12
472 497 4.452733 CCGAAGGCCTGTCCGACC 62.453 72.222 19.97 0.00 46.14 4.79
473 498 4.796231 CGAAGGCCTGTCCGACCG 62.796 72.222 5.69 0.00 40.77 4.79
479 504 4.452733 CCTGTCCGACCGCCTTCC 62.453 72.222 0.00 0.00 0.00 3.46
482 507 4.060038 GTCCGACCGCCTTCCGAA 62.060 66.667 0.00 0.00 40.02 4.30
504 529 1.215382 CTGTCCGAACATCCTCGCA 59.785 57.895 0.00 0.00 37.51 5.10
526 551 4.941873 CAGTTGGGAGGTTGTAAATCCTAC 59.058 45.833 0.00 0.00 33.83 3.18
555 581 3.119673 GGATCTGCATCGACGATCTACAT 60.120 47.826 7.54 0.00 35.18 2.29
576 602 2.583593 CTCTACTTCCGCTGCGCC 60.584 66.667 18.00 0.00 0.00 6.53
639 666 3.434024 CCATAGTGATCCTGGCATGTTCA 60.434 47.826 0.00 0.15 0.00 3.18
697 724 5.238650 CCCTACAACGTTTTCTTGAACAGAT 59.761 40.000 0.00 0.00 0.00 2.90
700 727 8.504005 CCTACAACGTTTTCTTGAACAGATTAT 58.496 33.333 0.00 0.00 0.00 1.28
735 762 2.002127 CATCAAGGAAGAGCGACGC 58.998 57.895 13.03 13.03 0.00 5.19
746 773 0.795735 GAGCGACGCGTTAAGCTACA 60.796 55.000 28.46 0.00 45.59 2.74
771 823 1.135094 ATGCTCCCACAGACCCTATG 58.865 55.000 0.00 0.00 0.00 2.23
777 829 1.354368 CCCACAGACCCTATGTTTGGT 59.646 52.381 0.00 0.00 33.46 3.67
856 908 2.624838 CCAAGTTGTTGATGGTCAGCTT 59.375 45.455 1.45 0.00 35.46 3.74
863 915 1.817357 TGATGGTCAGCTTCTGCAAG 58.183 50.000 0.00 0.00 42.74 4.01
917 969 3.508762 TGTTTTCTAGCGTCGATCTTCC 58.491 45.455 0.00 0.00 0.00 3.46
941 993 2.687297 TGGGATTGATCTGCTCTAGCT 58.313 47.619 3.26 0.00 42.66 3.32
969 1021 2.299582 CTGGCCAGAGGATGACTATGAG 59.700 54.545 29.88 0.00 40.90 2.90
970 1022 1.001860 GGCCAGAGGATGACTATGAGC 59.998 57.143 0.00 0.00 40.90 4.26
992 1044 2.605837 TGTGGTTGTTACGCTCAAGA 57.394 45.000 0.00 0.00 0.00 3.02
1002 1054 5.297547 TGTTACGCTCAAGAAGATCAAAGT 58.702 37.500 0.00 0.00 0.00 2.66
1027 1079 9.607285 GTTGAGTACACCAAACTAATACAATTG 57.393 33.333 3.24 3.24 0.00 2.32
1033 1085 7.836842 ACACCAAACTAATACAATTGGGATTC 58.163 34.615 10.83 0.00 45.22 2.52
1035 1087 5.977129 CCAAACTAATACAATTGGGATTCGC 59.023 40.000 10.83 0.00 38.89 4.70
1044 1096 1.529226 TTGGGATTCGCAACGTTCAT 58.471 45.000 11.71 0.00 31.55 2.57
1056 1108 6.487960 TCGCAACGTTCATAAGAAAAAGAAA 58.512 32.000 0.00 0.00 35.08 2.52
1244 1711 7.222000 TGTGTTTCCTACCAATTTTGTATCC 57.778 36.000 0.00 0.00 0.00 2.59
1247 1714 6.071616 TGTTTCCTACCAATTTTGTATCCAGC 60.072 38.462 0.00 0.00 0.00 4.85
1250 1717 5.652014 TCCTACCAATTTTGTATCCAGCTTG 59.348 40.000 0.00 0.00 0.00 4.01
1317 1784 8.642432 TGAAGGGAATATGACATACTGAGTTAG 58.358 37.037 0.00 0.00 0.00 2.34
1336 1803 2.028876 AGTGTGCACCAAAGTTTACCC 58.971 47.619 15.69 0.00 0.00 3.69
1422 1892 7.571080 AAACAGAATTGCCATGTGAAAATTT 57.429 28.000 0.00 0.00 0.00 1.82
1424 1894 8.674263 AACAGAATTGCCATGTGAAAATTTTA 57.326 26.923 2.75 0.00 0.00 1.52
1535 2034 9.768215 TCCATCCTACATACATATGTAATCTCA 57.232 33.333 19.11 0.00 45.48 3.27
1579 2078 1.765230 AGTGATGGAGGAGGTCGTAC 58.235 55.000 0.00 0.00 0.00 3.67
1590 2089 4.315803 AGGAGGTCGTACTTTTGATTGTG 58.684 43.478 0.00 0.00 0.00 3.33
1710 2209 2.125832 AACCGCACGTATGACCGG 60.126 61.111 0.00 0.00 45.80 5.28
1809 3504 7.823745 ACCAAAGAACACTTTCATCAAGTAT 57.176 32.000 0.00 0.00 44.60 2.12
1902 3597 8.599624 ATGACTTCAATGGAAAATATTGGTCT 57.400 30.769 0.00 0.00 36.44 3.85
2023 3718 0.113190 CCCTGGCCTGGAAAACTTCT 59.887 55.000 29.21 0.00 0.00 2.85
2122 3817 3.309296 GGTAACTCTGGGATGGAGATCA 58.691 50.000 0.00 0.00 35.10 2.92
2185 4520 8.621532 AGTTATACGAAGTCCGGTATGTATAA 57.378 34.615 0.00 11.36 43.93 0.98
2419 4999 3.499338 TGGCATCACAAGACCAGAAAAT 58.501 40.909 0.00 0.00 0.00 1.82
2967 5987 3.438781 ACATCGCCAATGACATTAAACGT 59.561 39.130 0.00 0.00 38.83 3.99
3040 6062 8.593945 TTTTGAAGGGAAGCATTTATATGTCT 57.406 30.769 0.00 0.00 34.12 3.41
3041 6063 8.593945 TTTGAAGGGAAGCATTTATATGTCTT 57.406 30.769 0.00 0.08 33.65 3.01
3042 6064 7.807977 TGAAGGGAAGCATTTATATGTCTTC 57.192 36.000 15.33 15.33 40.39 2.87
3043 6065 7.577303 TGAAGGGAAGCATTTATATGTCTTCT 58.423 34.615 19.28 8.71 40.64 2.85
3123 6145 6.151691 GCTGCAAAATTTAGTTCATGTCAGA 58.848 36.000 0.00 0.00 0.00 3.27
3126 6148 7.362662 TGCAAAATTTAGTTCATGTCAGAGTC 58.637 34.615 0.00 0.00 0.00 3.36
3128 6150 7.308830 GCAAAATTTAGTTCATGTCAGAGTCCT 60.309 37.037 0.00 0.00 0.00 3.85
3129 6151 9.219603 CAAAATTTAGTTCATGTCAGAGTCCTA 57.780 33.333 0.00 0.00 0.00 2.94
3130 6152 9.965902 AAAATTTAGTTCATGTCAGAGTCCTAT 57.034 29.630 0.00 0.00 0.00 2.57
3134 6156 8.996651 TTAGTTCATGTCAGAGTCCTATATGA 57.003 34.615 0.00 0.00 0.00 2.15
3135 6157 9.593565 TTAGTTCATGTCAGAGTCCTATATGAT 57.406 33.333 0.00 0.00 0.00 2.45
3137 6159 9.019656 AGTTCATGTCAGAGTCCTATATGATAC 57.980 37.037 0.00 5.26 0.00 2.24
3138 6160 9.019656 GTTCATGTCAGAGTCCTATATGATACT 57.980 37.037 0.00 0.00 0.00 2.12
3139 6161 8.800370 TCATGTCAGAGTCCTATATGATACTC 57.200 38.462 0.00 0.00 38.90 2.59
3140 6162 7.831690 TCATGTCAGAGTCCTATATGATACTCC 59.168 40.741 8.65 0.00 39.33 3.85
3141 6163 6.486056 TGTCAGAGTCCTATATGATACTCCC 58.514 44.000 8.65 1.57 39.33 4.30
3142 6164 6.275855 TGTCAGAGTCCTATATGATACTCCCT 59.724 42.308 8.65 0.00 39.33 4.20
3143 6165 7.179269 GTCAGAGTCCTATATGATACTCCCTT 58.821 42.308 8.65 0.00 39.33 3.95
3144 6166 7.338449 GTCAGAGTCCTATATGATACTCCCTTC 59.662 44.444 8.65 0.00 39.33 3.46
3145 6167 6.317642 CAGAGTCCTATATGATACTCCCTTCG 59.682 46.154 8.65 0.00 39.33 3.79
3146 6168 6.012333 AGAGTCCTATATGATACTCCCTTCGT 60.012 42.308 8.65 0.00 39.33 3.85
3147 6169 6.553857 AGTCCTATATGATACTCCCTTCGTT 58.446 40.000 0.00 0.00 0.00 3.85
3148 6170 6.660094 AGTCCTATATGATACTCCCTTCGTTC 59.340 42.308 0.00 0.00 0.00 3.95
3149 6171 5.950549 TCCTATATGATACTCCCTTCGTTCC 59.049 44.000 0.00 0.00 0.00 3.62
3150 6172 5.952947 CCTATATGATACTCCCTTCGTTCCT 59.047 44.000 0.00 0.00 0.00 3.36
3151 6173 7.037080 TCCTATATGATACTCCCTTCGTTCCTA 60.037 40.741 0.00 0.00 0.00 2.94
3152 6174 7.614583 CCTATATGATACTCCCTTCGTTCCTAA 59.385 40.741 0.00 0.00 0.00 2.69
3153 6175 7.850935 ATATGATACTCCCTTCGTTCCTAAA 57.149 36.000 0.00 0.00 0.00 1.85
3154 6176 6.749036 ATGATACTCCCTTCGTTCCTAAAT 57.251 37.500 0.00 0.00 0.00 1.40
3155 6177 7.850935 ATGATACTCCCTTCGTTCCTAAATA 57.149 36.000 0.00 0.00 0.00 1.40
3156 6178 7.850935 TGATACTCCCTTCGTTCCTAAATAT 57.149 36.000 0.00 0.00 0.00 1.28
3157 6179 8.945195 TGATACTCCCTTCGTTCCTAAATATA 57.055 34.615 0.00 0.00 0.00 0.86
3158 6180 9.370930 TGATACTCCCTTCGTTCCTAAATATAA 57.629 33.333 0.00 0.00 0.00 0.98
3159 6181 9.857957 GATACTCCCTTCGTTCCTAAATATAAG 57.142 37.037 0.00 0.00 0.00 1.73
3160 6182 6.522946 ACTCCCTTCGTTCCTAAATATAAGC 58.477 40.000 0.00 0.00 0.00 3.09
3161 6183 6.099269 ACTCCCTTCGTTCCTAAATATAAGCA 59.901 38.462 0.00 0.00 0.00 3.91
3162 6184 7.074653 TCCCTTCGTTCCTAAATATAAGCAT 57.925 36.000 0.00 0.00 0.00 3.79
3163 6185 7.514721 TCCCTTCGTTCCTAAATATAAGCATT 58.485 34.615 0.00 0.00 0.00 3.56
3164 6186 7.996644 TCCCTTCGTTCCTAAATATAAGCATTT 59.003 33.333 0.00 0.00 32.91 2.32
3165 6187 8.630037 CCCTTCGTTCCTAAATATAAGCATTTT 58.370 33.333 0.00 0.00 30.84 1.82
3166 6188 9.665264 CCTTCGTTCCTAAATATAAGCATTTTC 57.335 33.333 0.00 0.00 30.84 2.29
3169 6191 9.607988 TCGTTCCTAAATATAAGCATTTTCAGA 57.392 29.630 0.00 0.00 30.84 3.27
3170 6192 9.869844 CGTTCCTAAATATAAGCATTTTCAGAG 57.130 33.333 0.00 0.00 30.84 3.35
3183 6205 8.529424 AGCATTTTCAGAGATTTCAATATGGA 57.471 30.769 0.00 0.00 0.00 3.41
3184 6206 8.411683 AGCATTTTCAGAGATTTCAATATGGAC 58.588 33.333 0.00 0.00 0.00 4.02
3185 6207 8.411683 GCATTTTCAGAGATTTCAATATGGACT 58.588 33.333 0.00 0.00 0.00 3.85
3188 6210 9.958180 TTTTCAGAGATTTCAATATGGACTACA 57.042 29.630 0.00 0.00 0.00 2.74
3192 6214 9.133627 CAGAGATTTCAATATGGACTACATACG 57.866 37.037 0.00 0.00 44.41 3.06
3193 6215 8.307483 AGAGATTTCAATATGGACTACATACGG 58.693 37.037 0.00 0.00 44.41 4.02
3194 6216 8.190326 AGATTTCAATATGGACTACATACGGA 57.810 34.615 0.00 0.00 44.41 4.69
3195 6217 8.307483 AGATTTCAATATGGACTACATACGGAG 58.693 37.037 0.00 0.00 44.41 4.63
3196 6218 5.386958 TCAATATGGACTACATACGGAGC 57.613 43.478 0.00 0.00 44.41 4.70
3197 6219 4.830600 TCAATATGGACTACATACGGAGCA 59.169 41.667 0.00 0.00 44.41 4.26
3198 6220 5.303333 TCAATATGGACTACATACGGAGCAA 59.697 40.000 0.00 0.00 44.41 3.91
3199 6221 5.801531 ATATGGACTACATACGGAGCAAA 57.198 39.130 0.00 0.00 44.41 3.68
3200 6222 3.965379 TGGACTACATACGGAGCAAAA 57.035 42.857 0.00 0.00 0.00 2.44
3201 6223 4.481368 TGGACTACATACGGAGCAAAAT 57.519 40.909 0.00 0.00 0.00 1.82
3202 6224 4.188462 TGGACTACATACGGAGCAAAATG 58.812 43.478 0.00 0.00 0.00 2.32
3203 6225 4.081365 TGGACTACATACGGAGCAAAATGA 60.081 41.667 0.00 0.00 0.00 2.57
3204 6226 4.508124 GGACTACATACGGAGCAAAATGAG 59.492 45.833 0.00 0.00 0.00 2.90
3205 6227 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
3206 6228 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
3207 6229 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
3208 6230 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
3209 6231 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
3210 6232 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
3211 6233 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
3212 6234 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
3213 6235 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
3214 6236 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
3215 6237 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
3250 6272 9.658799 ATGTCTATATACATTTGTATGCAGTCC 57.341 33.333 12.41 6.33 41.03 3.85
3251 6273 8.646900 TGTCTATATACATTTGTATGCAGTCCA 58.353 33.333 12.41 8.10 41.03 4.02
3252 6274 9.658799 GTCTATATACATTTGTATGCAGTCCAT 57.341 33.333 12.41 0.77 41.03 3.41
3257 6279 8.922931 ATACATTTGTATGCAGTCCATATTGA 57.077 30.769 2.48 0.00 39.57 2.57
3258 6280 7.643569 ACATTTGTATGCAGTCCATATTGAA 57.356 32.000 0.00 0.00 38.60 2.69
3259 6281 8.065473 ACATTTGTATGCAGTCCATATTGAAA 57.935 30.769 0.00 0.00 38.60 2.69
3260 6282 8.698210 ACATTTGTATGCAGTCCATATTGAAAT 58.302 29.630 0.00 0.00 38.60 2.17
3261 6283 9.188588 CATTTGTATGCAGTCCATATTGAAATC 57.811 33.333 0.00 0.00 38.60 2.17
3262 6284 8.523915 TTTGTATGCAGTCCATATTGAAATCT 57.476 30.769 0.00 0.00 38.60 2.40
3263 6285 7.734924 TGTATGCAGTCCATATTGAAATCTC 57.265 36.000 0.00 0.00 38.60 2.75
3264 6286 7.512130 TGTATGCAGTCCATATTGAAATCTCT 58.488 34.615 0.00 0.00 38.60 3.10
3265 6287 7.994911 TGTATGCAGTCCATATTGAAATCTCTT 59.005 33.333 0.00 0.00 38.60 2.85
3266 6288 9.494271 GTATGCAGTCCATATTGAAATCTCTTA 57.506 33.333 0.00 0.00 38.60 2.10
3267 6289 8.985315 ATGCAGTCCATATTGAAATCTCTTAA 57.015 30.769 0.00 0.00 30.69 1.85
3268 6290 8.985315 TGCAGTCCATATTGAAATCTCTTAAT 57.015 30.769 0.00 0.00 0.00 1.40
3269 6291 8.843262 TGCAGTCCATATTGAAATCTCTTAATG 58.157 33.333 0.00 0.00 0.00 1.90
3270 6292 8.295288 GCAGTCCATATTGAAATCTCTTAATGG 58.705 37.037 0.00 0.00 0.00 3.16
3271 6293 8.790718 CAGTCCATATTGAAATCTCTTAATGGG 58.209 37.037 0.00 0.00 0.00 4.00
3272 6294 7.449704 AGTCCATATTGAAATCTCTTAATGGGC 59.550 37.037 0.00 0.00 0.00 5.36
3273 6295 7.449704 GTCCATATTGAAATCTCTTAATGGGCT 59.550 37.037 0.00 0.00 0.00 5.19
3274 6296 8.006564 TCCATATTGAAATCTCTTAATGGGCTT 58.993 33.333 0.00 0.00 0.00 4.35
3275 6297 9.300681 CCATATTGAAATCTCTTAATGGGCTTA 57.699 33.333 0.00 0.00 0.00 3.09
3327 6349 9.832445 ATTATTCCTAGTGTTGTACCATTACAG 57.168 33.333 0.00 0.00 39.44 2.74
3334 6356 6.688578 AGTGTTGTACCATTACAGTCTACAG 58.311 40.000 0.00 0.00 39.44 2.74
3363 6385 7.332182 GGTTGTGTCCAAGTTTTAAATTTGACA 59.668 33.333 13.30 12.00 36.65 3.58
3484 6615 6.493166 TCTGAAACAGGTCCAAATATTCCAT 58.507 36.000 0.00 0.00 31.51 3.41
3485 6616 6.377996 TCTGAAACAGGTCCAAATATTCCATG 59.622 38.462 0.00 0.00 31.51 3.66
3634 6765 1.218316 GACCAGACCATGACGTCCC 59.782 63.158 14.12 0.00 32.91 4.46
3660 6791 0.036010 CATCAGTGAGGAGGCGGTTT 60.036 55.000 0.00 0.00 0.00 3.27
3687 6820 1.750399 GCCTGGCACGGAACATGAT 60.750 57.895 15.17 0.00 36.31 2.45
3852 6985 6.604171 ACATGATATAATTGCTCCCAAGTGA 58.396 36.000 0.00 0.00 33.80 3.41
3879 7012 3.508793 CCAGGCTGTTCACATTTCTCATT 59.491 43.478 14.43 0.00 0.00 2.57
3880 7013 4.021719 CCAGGCTGTTCACATTTCTCATTT 60.022 41.667 14.43 0.00 0.00 2.32
3999 7186 4.040095 TGAGAGGGCATACAGATCTTCATG 59.960 45.833 8.40 8.40 0.00 3.07
4113 7369 5.809001 TCATCTGCCAGTTACATTTCTTCT 58.191 37.500 0.00 0.00 0.00 2.85
4155 7419 8.434392 TCATTCATTCATCATCTGATCCTTGTA 58.566 33.333 0.00 0.00 32.72 2.41
4347 7635 2.702478 CAGAATCCCTGTCCTGCTGATA 59.298 50.000 0.00 0.00 38.10 2.15
4352 7640 2.237143 TCCCTGTCCTGCTGATACTTTG 59.763 50.000 0.00 0.00 0.00 2.77
4400 7688 5.989168 TGTATGTTAATACAGAAGATGCCGG 59.011 40.000 0.00 0.00 42.98 6.13
4401 7689 4.746535 TGTTAATACAGAAGATGCCGGA 57.253 40.909 5.05 0.00 0.00 5.14
4403 7691 2.246719 AATACAGAAGATGCCGGAGC 57.753 50.000 5.05 0.00 40.48 4.70
4404 7692 1.418334 ATACAGAAGATGCCGGAGCT 58.582 50.000 5.05 0.00 40.80 4.09
4405 7693 1.195115 TACAGAAGATGCCGGAGCTT 58.805 50.000 5.05 4.64 40.80 3.74
4406 7694 0.392193 ACAGAAGATGCCGGAGCTTG 60.392 55.000 5.05 0.00 40.80 4.01
4407 7695 1.094073 CAGAAGATGCCGGAGCTTGG 61.094 60.000 5.05 1.68 40.80 3.61
4433 7721 3.137544 ACTGGTAAGAAATCACCACCACA 59.862 43.478 0.00 0.00 39.91 4.17
4443 7732 3.702802 CCACCACATGGCAGCAAT 58.297 55.556 0.00 0.00 43.24 3.56
4455 7744 1.731700 CAGCAATGAAGATGCCGGG 59.268 57.895 2.18 0.00 44.91 5.73
4461 7757 0.753111 ATGAAGATGCCGGGGCTTTC 60.753 55.000 11.55 11.96 42.51 2.62
4473 7769 2.289444 CGGGGCTTTCTACAGAAGTTGA 60.289 50.000 0.00 0.00 35.21 3.18
4477 7773 5.249420 GGGCTTTCTACAGAAGTTGAGATT 58.751 41.667 0.00 0.00 35.21 2.40
4486 7782 5.542779 ACAGAAGTTGAGATTAGTGGTGAC 58.457 41.667 0.00 0.00 0.00 3.67
4523 7820 2.938956 AAGCCCTTTATCCCTCATCG 57.061 50.000 0.00 0.00 0.00 3.84
4525 7822 2.127708 AGCCCTTTATCCCTCATCGTT 58.872 47.619 0.00 0.00 0.00 3.85
4564 9383 0.321298 CCTCCAACCTACCCGTGTTG 60.321 60.000 0.00 0.00 41.13 3.33
4573 9392 3.262405 ACCTACCCGTGTTGTCATACATT 59.738 43.478 0.00 0.00 0.00 2.71
4813 9634 4.269603 CAGTGCTGTACAGTATGCTGAATC 59.730 45.833 23.44 5.40 45.28 2.52
4930 9751 3.695606 GGCTGCAGTCCGGAGTCA 61.696 66.667 16.64 9.78 37.67 3.41
4957 9778 0.652592 GGCGGAACATCATGAGAACG 59.347 55.000 0.09 2.79 0.00 3.95
4959 9780 0.652592 CGGAACATCATGAGAACGCC 59.347 55.000 0.09 0.00 0.00 5.68
4963 9784 2.093306 ACATCATGAGAACGCCGAAA 57.907 45.000 0.09 0.00 0.00 3.46
4965 9786 2.352651 ACATCATGAGAACGCCGAAATG 59.647 45.455 0.09 0.00 0.00 2.32
4999 9820 5.936372 TGCAGAGATTATAGCATTCCATGAC 59.064 40.000 0.00 0.00 31.05 3.06
5012 9833 1.300465 CATGACGCCAGATCCCTCG 60.300 63.158 0.00 0.00 0.00 4.63
5029 9850 2.508439 GCGGGCATCGACTCGAAA 60.508 61.111 5.00 0.00 39.99 3.46
5031 9852 1.429148 GCGGGCATCGACTCGAAAAT 61.429 55.000 5.00 0.00 39.99 1.82
5035 9856 2.006888 GGCATCGACTCGAAAATGGAA 58.993 47.619 5.00 0.00 39.99 3.53
5038 9859 3.370978 GCATCGACTCGAAAATGGAAAGA 59.629 43.478 5.00 0.00 39.99 2.52
5044 9865 4.074970 ACTCGAAAATGGAAAGAGCATGT 58.925 39.130 0.00 0.00 32.60 3.21
5052 9873 2.093288 TGGAAAGAGCATGTCCTAGCTG 60.093 50.000 0.00 0.00 42.04 4.24
5053 9874 2.093235 GGAAAGAGCATGTCCTAGCTGT 60.093 50.000 0.00 0.00 42.04 4.40
5064 9885 2.744741 GTCCTAGCTGTTTCTTTCTGGC 59.255 50.000 0.00 0.00 0.00 4.85
5083 9904 2.279741 GCGTACATTCCAATCAGAGCA 58.720 47.619 0.00 0.00 0.00 4.26
5094 9915 1.471119 ATCAGAGCATTTGCCACTGG 58.529 50.000 19.62 0.00 42.15 4.00
5111 9932 2.836981 ACTGGCAACTCTATCTCAAGCT 59.163 45.455 0.00 0.00 37.61 3.74
5194 10015 1.687494 GCATCTTCGACAGCACGACC 61.687 60.000 0.00 0.00 41.97 4.79
5257 10078 1.515020 CGTTGCCTGAGGAGAGAGG 59.485 63.158 0.65 0.00 0.00 3.69
5349 10170 2.513204 CTGGCACGCCATCTCCAG 60.513 66.667 11.97 0.00 46.15 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 8.953313 GCTTCTCTCTACCTCTATTTATAGGAC 58.047 40.741 0.00 0.00 36.66 3.85
24 25 1.892474 AGTGAGTGTGGAGAGCTTCTC 59.108 52.381 0.00 0.00 42.66 2.87
27 28 0.972883 GGAGTGAGTGTGGAGAGCTT 59.027 55.000 0.00 0.00 0.00 3.74
44 45 2.571202 TGGCATGTGTATGAGAGTTGGA 59.429 45.455 0.00 0.00 36.36 3.53
61 62 2.651382 AAGCTAGATCATGCATGGCA 57.349 45.000 25.97 8.77 44.86 4.92
68 69 4.588106 TGAGGGAGAGAAAGCTAGATCATG 59.412 45.833 0.00 0.00 0.00 3.07
76 77 3.113191 TCATCTGAGGGAGAGAAAGCT 57.887 47.619 0.00 0.00 32.80 3.74
79 80 7.502060 AACTATTTCATCTGAGGGAGAGAAA 57.498 36.000 0.00 0.00 34.81 2.52
87 88 6.404074 GCTCCACAAAACTATTTCATCTGAGG 60.404 42.308 0.00 0.00 0.00 3.86
89 90 5.415701 GGCTCCACAAAACTATTTCATCTGA 59.584 40.000 0.00 0.00 0.00 3.27
91 92 4.396166 CGGCTCCACAAAACTATTTCATCT 59.604 41.667 0.00 0.00 0.00 2.90
92 93 4.394920 TCGGCTCCACAAAACTATTTCATC 59.605 41.667 0.00 0.00 0.00 2.92
93 94 4.331968 TCGGCTCCACAAAACTATTTCAT 58.668 39.130 0.00 0.00 0.00 2.57
94 95 3.745799 TCGGCTCCACAAAACTATTTCA 58.254 40.909 0.00 0.00 0.00 2.69
105 109 0.534203 GACAACCTTTCGGCTCCACA 60.534 55.000 0.00 0.00 0.00 4.17
108 112 0.955919 CCAGACAACCTTTCGGCTCC 60.956 60.000 0.00 0.00 0.00 4.70
114 118 3.888930 TGTTGGAATCCAGACAACCTTTC 59.111 43.478 12.57 0.00 42.75 2.62
120 124 4.792068 AGTTTCTGTTGGAATCCAGACAA 58.208 39.130 14.76 6.90 37.43 3.18
126 130 7.598869 GTCCAAAATTAGTTTCTGTTGGAATCC 59.401 37.037 4.59 0.00 34.16 3.01
128 132 7.145323 CGTCCAAAATTAGTTTCTGTTGGAAT 58.855 34.615 4.59 0.00 34.16 3.01
133 137 4.555906 CGCCGTCCAAAATTAGTTTCTGTT 60.556 41.667 0.00 0.00 0.00 3.16
134 138 3.058501 CGCCGTCCAAAATTAGTTTCTGT 60.059 43.478 0.00 0.00 0.00 3.41
138 142 3.610821 GCTTCGCCGTCCAAAATTAGTTT 60.611 43.478 0.00 0.00 0.00 2.66
144 148 3.274067 GGCTTCGCCGTCCAAAAT 58.726 55.556 0.00 0.00 39.62 1.82
155 159 1.179814 AGCTATCCGGTAGGGCTTCG 61.180 60.000 0.00 0.00 38.33 3.79
164 168 2.082140 TATGGTGTCAGCTATCCGGT 57.918 50.000 0.00 0.00 0.00 5.28
181 185 1.834896 TCTACGGGGTTGCACACATAT 59.165 47.619 0.00 0.00 0.00 1.78
212 216 1.740025 CCCTCAGGCAAAAGATCGAAC 59.260 52.381 0.00 0.00 0.00 3.95
225 229 2.581354 CTCGAACAGCCCCTCAGG 59.419 66.667 0.00 0.00 39.47 3.86
227 231 3.003173 CCCTCGAACAGCCCCTCA 61.003 66.667 0.00 0.00 0.00 3.86
228 232 4.475135 GCCCTCGAACAGCCCCTC 62.475 72.222 0.00 0.00 0.00 4.30
233 237 4.475135 GGGAGGCCCTCGAACAGC 62.475 72.222 4.29 0.00 41.34 4.40
234 238 4.148825 CGGGAGGCCCTCGAACAG 62.149 72.222 4.29 0.00 42.67 3.16
252 256 1.079750 GGTCACTCGAACAGCCCTC 60.080 63.158 0.00 0.00 0.00 4.30
258 262 1.848932 CTCGGACGGTCACTCGAACA 61.849 60.000 10.76 0.00 0.00 3.18
261 265 1.168407 AAACTCGGACGGTCACTCGA 61.168 55.000 10.76 8.91 0.00 4.04
262 266 0.728466 GAAACTCGGACGGTCACTCG 60.728 60.000 10.76 4.75 0.00 4.18
270 274 1.401670 CCACTCTCAGAAACTCGGACG 60.402 57.143 0.00 0.00 0.00 4.79
272 276 0.603569 GCCACTCTCAGAAACTCGGA 59.396 55.000 0.00 0.00 0.00 4.55
281 285 0.536260 CCTTCAGGAGCCACTCTCAG 59.464 60.000 0.00 0.00 43.70 3.35
282 286 0.906756 CCCTTCAGGAGCCACTCTCA 60.907 60.000 0.00 0.00 43.70 3.27
283 287 0.907230 ACCCTTCAGGAGCCACTCTC 60.907 60.000 0.00 0.00 41.15 3.20
284 288 0.474660 AACCCTTCAGGAGCCACTCT 60.475 55.000 0.00 0.00 39.89 3.24
286 290 1.062488 ACAACCCTTCAGGAGCCACT 61.062 55.000 0.00 0.00 39.89 4.00
287 291 0.606673 GACAACCCTTCAGGAGCCAC 60.607 60.000 0.00 0.00 39.89 5.01
288 292 0.768221 AGACAACCCTTCAGGAGCCA 60.768 55.000 0.00 0.00 39.89 4.75
289 293 0.322008 CAGACAACCCTTCAGGAGCC 60.322 60.000 0.00 0.00 39.89 4.70
290 294 0.687354 TCAGACAACCCTTCAGGAGC 59.313 55.000 0.00 0.00 39.89 4.70
292 296 1.694150 CACTCAGACAACCCTTCAGGA 59.306 52.381 0.00 0.00 39.89 3.86
293 297 1.694150 TCACTCAGACAACCCTTCAGG 59.306 52.381 0.00 0.00 43.78 3.86
294 298 2.760374 GTCACTCAGACAACCCTTCAG 58.240 52.381 0.00 0.00 46.77 3.02
295 299 2.910688 GTCACTCAGACAACCCTTCA 57.089 50.000 0.00 0.00 46.77 3.02
307 311 4.447290 TCAGAAATTCAAACGGTCACTCA 58.553 39.130 0.00 0.00 0.00 3.41
318 322 3.328931 AGGAGCCACTCTCAGAAATTCAA 59.671 43.478 0.00 0.00 43.70 2.69
319 323 2.909006 AGGAGCCACTCTCAGAAATTCA 59.091 45.455 0.00 0.00 43.70 2.57
322 326 2.544721 TCAGGAGCCACTCTCAGAAAT 58.455 47.619 0.00 0.00 43.70 2.17
324 328 1.898472 CTTCAGGAGCCACTCTCAGAA 59.102 52.381 0.00 0.00 43.70 3.02
327 331 1.554836 CTCTTCAGGAGCCACTCTCA 58.445 55.000 0.00 0.00 43.70 3.27
336 340 0.108898 CACGGACAGCTCTTCAGGAG 60.109 60.000 0.00 0.00 44.49 3.69
337 341 0.539669 TCACGGACAGCTCTTCAGGA 60.540 55.000 0.00 0.00 0.00 3.86
338 342 0.389166 GTCACGGACAGCTCTTCAGG 60.389 60.000 0.00 0.00 32.09 3.86
339 343 0.315251 TGTCACGGACAGCTCTTCAG 59.685 55.000 3.02 0.00 37.67 3.02
340 344 0.969149 ATGTCACGGACAGCTCTTCA 59.031 50.000 11.50 0.00 46.04 3.02
341 345 1.634702 GATGTCACGGACAGCTCTTC 58.365 55.000 12.96 3.10 46.04 2.87
342 346 0.109086 CGATGTCACGGACAGCTCTT 60.109 55.000 16.49 0.40 45.32 2.85
343 347 1.244697 ACGATGTCACGGACAGCTCT 61.245 55.000 16.49 3.36 45.32 4.09
344 348 0.798771 GACGATGTCACGGACAGCTC 60.799 60.000 16.49 10.94 45.32 4.09
345 349 1.213013 GACGATGTCACGGACAGCT 59.787 57.895 16.49 7.12 45.32 4.24
346 350 1.805945 GGACGATGTCACGGACAGC 60.806 63.158 10.92 10.92 46.04 4.40
347 351 1.514228 CGGACGATGTCACGGACAG 60.514 63.158 11.50 3.33 46.04 3.51
348 352 1.918868 CTCGGACGATGTCACGGACA 61.919 60.000 8.81 8.81 46.90 4.02
349 353 1.226323 CTCGGACGATGTCACGGAC 60.226 63.158 0.00 0.00 37.61 4.79
350 354 2.404186 CCTCGGACGATGTCACGGA 61.404 63.158 0.00 0.00 37.61 4.69
351 355 2.102357 CCTCGGACGATGTCACGG 59.898 66.667 0.00 0.00 37.61 4.94
352 356 2.102357 CCCTCGGACGATGTCACG 59.898 66.667 0.00 1.09 33.68 4.35
353 357 1.139095 GTCCCTCGGACGATGTCAC 59.861 63.158 0.00 0.00 43.14 3.67
354 358 3.599584 GTCCCTCGGACGATGTCA 58.400 61.111 0.00 0.00 43.14 3.58
362 366 2.360852 GTCGGACAGTCCCTCGGA 60.361 66.667 14.46 2.31 31.13 4.55
363 367 3.450115 GGTCGGACAGTCCCTCGG 61.450 72.222 14.46 0.00 31.13 4.63
364 368 3.812019 CGGTCGGACAGTCCCTCG 61.812 72.222 14.46 11.16 31.13 4.63
365 369 4.131088 GCGGTCGGACAGTCCCTC 62.131 72.222 14.46 7.04 31.13 4.30
368 372 3.644399 GAAGGCGGTCGGACAGTCC 62.644 68.421 9.92 9.92 0.00 3.85
369 373 2.126031 GAAGGCGGTCGGACAGTC 60.126 66.667 10.76 7.69 0.00 3.51
370 374 3.692406 GGAAGGCGGTCGGACAGT 61.692 66.667 10.76 0.00 0.00 3.55
371 375 4.796231 CGGAAGGCGGTCGGACAG 62.796 72.222 10.76 7.23 0.00 3.51
373 377 3.984200 CTTCGGAAGGCGGTCGGAC 62.984 68.421 9.93 0.00 0.00 4.79
374 378 3.755628 CTTCGGAAGGCGGTCGGA 61.756 66.667 9.93 0.00 0.00 4.55
375 379 4.814294 CCTTCGGAAGGCGGTCGG 62.814 72.222 22.93 0.00 42.78 4.79
385 389 3.379445 GTCGGACAGGCCTTCGGA 61.379 66.667 0.00 11.49 0.00 4.55
393 397 4.452733 GGAAGGCGGTCGGACAGG 62.453 72.222 10.76 2.30 0.00 4.00
408 432 3.691342 CACGGACAGGCCTTCGGA 61.691 66.667 21.09 0.00 0.00 4.55
416 440 1.514228 CGACGATGTCACGGACAGG 60.514 63.158 11.50 8.73 46.04 4.00
429 453 2.745100 CGGACAGTCCCTCGACGA 60.745 66.667 14.46 0.00 44.28 4.20
434 458 4.131088 GCGGTCGGACAGTCCCTC 62.131 72.222 14.46 7.04 31.13 4.30
462 487 4.452733 GGAAGGCGGTCGGACAGG 62.453 72.222 10.76 2.30 0.00 4.00
475 500 2.125512 CGGACAGGCCTTCGGAAG 60.126 66.667 0.00 10.82 0.00 3.46
476 501 2.211410 TTCGGACAGGCCTTCGGAA 61.211 57.895 22.33 22.33 31.86 4.30
477 502 2.602267 TTCGGACAGGCCTTCGGA 60.602 61.111 0.00 11.49 0.00 4.55
478 503 2.434359 GTTCGGACAGGCCTTCGG 60.434 66.667 0.00 9.23 0.00 4.30
479 504 1.079127 ATGTTCGGACAGGCCTTCG 60.079 57.895 0.00 8.19 39.58 3.79
482 507 1.613630 AGGATGTTCGGACAGGCCT 60.614 57.895 13.81 13.81 39.58 5.19
484 509 1.519455 CGAGGATGTTCGGACAGGC 60.519 63.158 1.50 0.00 39.58 4.85
485 510 1.519455 GCGAGGATGTTCGGACAGG 60.519 63.158 1.50 0.00 39.58 4.00
486 511 0.803768 CTGCGAGGATGTTCGGACAG 60.804 60.000 1.50 0.00 39.58 3.51
487 512 1.215382 CTGCGAGGATGTTCGGACA 59.785 57.895 0.00 0.00 40.79 4.02
488 513 0.389948 AACTGCGAGGATGTTCGGAC 60.390 55.000 0.00 0.00 40.79 4.79
489 514 0.389817 CAACTGCGAGGATGTTCGGA 60.390 55.000 0.00 0.00 40.79 4.55
490 515 1.361668 CCAACTGCGAGGATGTTCGG 61.362 60.000 0.00 0.00 40.79 4.30
491 516 1.361668 CCCAACTGCGAGGATGTTCG 61.362 60.000 0.00 0.00 43.23 3.95
504 529 4.018688 GGTAGGATTTACAACCTCCCAACT 60.019 45.833 0.00 0.00 37.68 3.16
555 581 1.801332 GCAGCGGAAGTAGAGTCGA 59.199 57.895 0.00 0.00 0.00 4.20
576 602 3.692791 TCTGATCATTACCGACTCGTG 57.307 47.619 0.00 0.00 0.00 4.35
666 693 2.386064 AAACGTTGTAGGGGAGCGCA 62.386 55.000 11.47 0.00 0.00 6.09
670 697 3.735591 TCAAGAAAACGTTGTAGGGGAG 58.264 45.455 0.00 0.00 0.00 4.30
697 724 1.065709 GCCTTTCCGAGTGACCCATAA 60.066 52.381 0.00 0.00 0.00 1.90
700 727 1.488705 ATGCCTTTCCGAGTGACCCA 61.489 55.000 0.00 0.00 0.00 4.51
735 762 5.177696 GGGAGCATAATTCTGTAGCTTAACG 59.822 44.000 0.00 0.00 35.36 3.18
746 773 2.173569 GGGTCTGTGGGAGCATAATTCT 59.826 50.000 0.00 0.00 43.58 2.40
771 823 3.775661 AGTGTTAGTTGTGCACCAAAC 57.224 42.857 15.69 13.06 34.07 2.93
777 829 3.138304 CTGCCTAAGTGTTAGTTGTGCA 58.862 45.455 0.00 0.00 0.00 4.57
844 896 1.612462 CCTTGCAGAAGCTGACCATCA 60.612 52.381 0.00 0.00 42.74 3.07
856 908 1.625818 GGAAGAGAGGAACCTTGCAGA 59.374 52.381 0.00 0.00 32.10 4.26
863 915 1.948144 GCAGCAAGGAAGAGAGGAACC 60.948 57.143 0.00 0.00 0.00 3.62
903 955 2.483013 CCCAATTGGAAGATCGACGCTA 60.483 50.000 26.60 0.00 37.39 4.26
917 969 4.215827 GCTAGAGCAGATCAATCCCAATTG 59.784 45.833 0.00 0.00 41.20 2.32
941 993 0.621571 ATCCTCTGGCCAGGCAAGTA 60.622 55.000 32.23 10.34 32.91 2.24
969 1021 0.094730 GAGCGTAACAACCACATCGC 59.905 55.000 0.00 0.00 43.16 4.58
970 1022 1.424403 TGAGCGTAACAACCACATCG 58.576 50.000 0.00 0.00 0.00 3.84
992 1044 6.828785 AGTTTGGTGTACTCAACTTTGATCTT 59.171 34.615 0.00 0.00 36.46 2.40
1002 1054 8.788806 CCAATTGTATTAGTTTGGTGTACTCAA 58.211 33.333 4.43 0.00 35.07 3.02
1027 1079 2.933906 TCTTATGAACGTTGCGAATCCC 59.066 45.455 5.00 0.00 0.00 3.85
1033 1085 6.726035 TTTCTTTTTCTTATGAACGTTGCG 57.274 33.333 5.00 0.00 31.02 4.85
1111 1164 5.125417 TGCAGGGAAATGCTTCTAATTACAC 59.875 40.000 0.00 0.00 46.63 2.90
1181 1234 8.343168 ACATTTCCCGTCTAAATTCACAATAA 57.657 30.769 0.00 0.00 0.00 1.40
1197 1664 2.671396 CTCCGTTCTGTTACATTTCCCG 59.329 50.000 0.00 0.00 0.00 5.14
1310 1777 3.275617 ACTTTGGTGCACACTAACTCA 57.724 42.857 20.43 2.01 31.40 3.41
1317 1784 2.028876 AGGGTAAACTTTGGTGCACAC 58.971 47.619 20.43 8.79 0.00 3.82
1321 1788 3.311322 GCAAAAAGGGTAAACTTTGGTGC 59.689 43.478 10.07 10.07 41.22 5.01
1428 1898 8.258007 GCACCTACATATGAGGCTTATACATAA 58.742 37.037 10.38 0.00 37.63 1.90
1432 1902 6.153680 AGAGCACCTACATATGAGGCTTATAC 59.846 42.308 10.38 3.60 37.63 1.47
1535 2034 5.874810 ACAACAACAGAGCGTATGAATATGT 59.125 36.000 0.00 0.00 0.00 2.29
1538 2037 6.530181 CACTACAACAACAGAGCGTATGAATA 59.470 38.462 0.00 0.00 0.00 1.75
1546 2045 2.413112 CCATCACTACAACAACAGAGCG 59.587 50.000 0.00 0.00 0.00 5.03
1579 2078 0.388907 CCTGCGCCCACAATCAAAAG 60.389 55.000 4.18 0.00 0.00 2.27
1608 2107 2.202440 CATGCTGCAGTTGCGAGC 60.202 61.111 16.64 16.38 45.83 5.03
1809 3504 4.890158 ACACTCAATGTAGTCATCCACA 57.110 40.909 0.00 0.00 40.88 4.17
1902 3597 2.028925 ATGTCGCGCGCCATGATA 59.971 55.556 26.78 15.91 0.00 2.15
2122 3817 1.629043 TGAGAAGCAAGGTCGTAGGT 58.371 50.000 0.00 0.00 0.00 3.08
2419 4999 1.416401 GACTTCAGGACAAGTGGACCA 59.584 52.381 0.00 0.00 36.71 4.02
2426 5006 2.802816 CAGTTTCCGACTTCAGGACAAG 59.197 50.000 0.00 0.00 37.53 3.16
2494 5074 8.579850 AGGATATGCTCACTTTAATTTTGTCA 57.420 30.769 0.00 0.00 0.00 3.58
2585 5170 6.636454 AGTAATCCTTCCATGAACCTACAA 57.364 37.500 0.00 0.00 0.00 2.41
2736 5321 6.989659 AGAGAAGTTACAGTGGACGAAATTA 58.010 36.000 0.00 0.00 0.00 1.40
2745 5330 5.330455 TGCATCTAGAGAAGTTACAGTGG 57.670 43.478 0.00 0.00 0.00 4.00
2967 5987 2.382882 AGCTGCACATAGAGTCTGCTA 58.617 47.619 1.86 0.00 33.92 3.49
3014 6036 9.034800 AGACATATAAATGCTTCCCTTCAAAAA 57.965 29.630 0.00 0.00 36.50 1.94
3015 6037 8.593945 AGACATATAAATGCTTCCCTTCAAAA 57.406 30.769 0.00 0.00 36.50 2.44
3016 6038 8.593945 AAGACATATAAATGCTTCCCTTCAAA 57.406 30.769 0.00 0.00 36.50 2.69
3017 6039 8.055181 AGAAGACATATAAATGCTTCCCTTCAA 58.945 33.333 13.79 0.00 41.79 2.69
3018 6040 7.577303 AGAAGACATATAAATGCTTCCCTTCA 58.423 34.615 13.79 0.00 41.79 3.02
3019 6041 8.994170 GTAGAAGACATATAAATGCTTCCCTTC 58.006 37.037 13.79 0.00 41.79 3.46
3020 6042 8.718656 AGTAGAAGACATATAAATGCTTCCCTT 58.281 33.333 13.79 0.00 41.79 3.95
3021 6043 8.268878 AGTAGAAGACATATAAATGCTTCCCT 57.731 34.615 13.79 9.98 41.79 4.20
3022 6044 9.646427 CTAGTAGAAGACATATAAATGCTTCCC 57.354 37.037 13.79 8.68 41.79 3.97
3023 6045 9.646427 CCTAGTAGAAGACATATAAATGCTTCC 57.354 37.037 0.00 5.57 41.79 3.46
3026 6048 9.815306 TCTCCTAGTAGAAGACATATAAATGCT 57.185 33.333 0.00 0.00 36.50 3.79
3033 6055 9.482175 ACACTTTTCTCCTAGTAGAAGACATAT 57.518 33.333 0.00 0.00 36.85 1.78
3034 6056 8.880991 ACACTTTTCTCCTAGTAGAAGACATA 57.119 34.615 0.00 0.00 36.85 2.29
3035 6057 7.784470 ACACTTTTCTCCTAGTAGAAGACAT 57.216 36.000 0.00 0.00 36.85 3.06
3036 6058 7.434492 CAACACTTTTCTCCTAGTAGAAGACA 58.566 38.462 0.00 0.00 36.85 3.41
3037 6059 6.869388 CCAACACTTTTCTCCTAGTAGAAGAC 59.131 42.308 0.00 0.00 36.85 3.01
3038 6060 6.781014 TCCAACACTTTTCTCCTAGTAGAAGA 59.219 38.462 0.00 0.00 36.85 2.87
3039 6061 6.994221 TCCAACACTTTTCTCCTAGTAGAAG 58.006 40.000 0.00 0.00 36.85 2.85
3040 6062 6.989155 TCCAACACTTTTCTCCTAGTAGAA 57.011 37.500 0.00 0.00 33.69 2.10
3041 6063 7.310485 GGAATCCAACACTTTTCTCCTAGTAGA 60.310 40.741 0.00 0.00 0.00 2.59
3042 6064 6.819146 GGAATCCAACACTTTTCTCCTAGTAG 59.181 42.308 0.00 0.00 0.00 2.57
3043 6065 6.500751 AGGAATCCAACACTTTTCTCCTAGTA 59.499 38.462 0.61 0.00 30.24 1.82
3087 6109 3.476295 TTTTGCAGCATCTGATCGAAC 57.524 42.857 0.00 0.00 32.44 3.95
3123 6145 6.142259 ACGAAGGGAGTATCATATAGGACT 57.858 41.667 0.00 0.00 36.25 3.85
3126 6148 5.952947 AGGAACGAAGGGAGTATCATATAGG 59.047 44.000 0.00 0.00 36.25 2.57
3128 6150 8.945195 TTTAGGAACGAAGGGAGTATCATATA 57.055 34.615 0.00 0.00 36.25 0.86
3129 6151 7.850935 TTTAGGAACGAAGGGAGTATCATAT 57.149 36.000 0.00 0.00 36.25 1.78
3130 6152 7.850935 ATTTAGGAACGAAGGGAGTATCATA 57.149 36.000 0.00 0.00 36.25 2.15
3131 6153 6.749036 ATTTAGGAACGAAGGGAGTATCAT 57.251 37.500 0.00 0.00 36.25 2.45
3132 6154 7.850935 ATATTTAGGAACGAAGGGAGTATCA 57.149 36.000 0.00 0.00 36.25 2.15
3133 6155 9.857957 CTTATATTTAGGAACGAAGGGAGTATC 57.142 37.037 0.00 0.00 0.00 2.24
3134 6156 8.312564 GCTTATATTTAGGAACGAAGGGAGTAT 58.687 37.037 0.00 0.00 0.00 2.12
3135 6157 7.288389 TGCTTATATTTAGGAACGAAGGGAGTA 59.712 37.037 0.00 0.00 0.00 2.59
3136 6158 6.099269 TGCTTATATTTAGGAACGAAGGGAGT 59.901 38.462 0.00 0.00 0.00 3.85
3137 6159 6.522054 TGCTTATATTTAGGAACGAAGGGAG 58.478 40.000 0.00 0.00 0.00 4.30
3138 6160 6.488769 TGCTTATATTTAGGAACGAAGGGA 57.511 37.500 0.00 0.00 0.00 4.20
3139 6161 7.745620 AATGCTTATATTTAGGAACGAAGGG 57.254 36.000 0.00 0.00 0.00 3.95
3140 6162 9.665264 GAAAATGCTTATATTTAGGAACGAAGG 57.335 33.333 0.00 0.00 30.47 3.46
3143 6165 9.607988 TCTGAAAATGCTTATATTTAGGAACGA 57.392 29.630 0.00 0.00 30.47 3.85
3144 6166 9.869844 CTCTGAAAATGCTTATATTTAGGAACG 57.130 33.333 0.00 0.00 30.47 3.95
3157 6179 8.974238 TCCATATTGAAATCTCTGAAAATGCTT 58.026 29.630 0.00 0.00 0.00 3.91
3158 6180 8.411683 GTCCATATTGAAATCTCTGAAAATGCT 58.588 33.333 0.00 0.00 0.00 3.79
3159 6181 8.411683 AGTCCATATTGAAATCTCTGAAAATGC 58.588 33.333 0.00 0.00 0.00 3.56
3162 6184 9.958180 TGTAGTCCATATTGAAATCTCTGAAAA 57.042 29.630 0.00 0.00 0.00 2.29
3166 6188 9.133627 CGTATGTAGTCCATATTGAAATCTCTG 57.866 37.037 0.00 0.00 38.29 3.35
3167 6189 8.307483 CCGTATGTAGTCCATATTGAAATCTCT 58.693 37.037 0.00 0.00 38.29 3.10
3168 6190 8.304596 TCCGTATGTAGTCCATATTGAAATCTC 58.695 37.037 0.00 0.00 38.29 2.75
3169 6191 8.190326 TCCGTATGTAGTCCATATTGAAATCT 57.810 34.615 0.00 0.00 38.29 2.40
3170 6192 7.063544 GCTCCGTATGTAGTCCATATTGAAATC 59.936 40.741 0.00 0.00 38.29 2.17
3171 6193 6.874134 GCTCCGTATGTAGTCCATATTGAAAT 59.126 38.462 0.00 0.00 38.29 2.17
3172 6194 6.183360 TGCTCCGTATGTAGTCCATATTGAAA 60.183 38.462 0.00 0.00 38.29 2.69
3173 6195 5.303333 TGCTCCGTATGTAGTCCATATTGAA 59.697 40.000 0.00 0.00 38.29 2.69
3174 6196 4.830600 TGCTCCGTATGTAGTCCATATTGA 59.169 41.667 0.00 0.00 38.29 2.57
3175 6197 5.134202 TGCTCCGTATGTAGTCCATATTG 57.866 43.478 0.00 0.00 38.29 1.90
3176 6198 5.801531 TTGCTCCGTATGTAGTCCATATT 57.198 39.130 0.00 0.00 38.29 1.28
3177 6199 5.801531 TTTGCTCCGTATGTAGTCCATAT 57.198 39.130 0.00 0.00 38.29 1.78
3178 6200 5.601583 TTTTGCTCCGTATGTAGTCCATA 57.398 39.130 0.00 0.00 34.86 2.74
3179 6201 4.481368 TTTTGCTCCGTATGTAGTCCAT 57.519 40.909 0.00 0.00 37.58 3.41
3180 6202 3.965379 TTTTGCTCCGTATGTAGTCCA 57.035 42.857 0.00 0.00 0.00 4.02
3181 6203 4.439057 TCATTTTGCTCCGTATGTAGTCC 58.561 43.478 0.00 0.00 0.00 3.85
3182 6204 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
3183 6205 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
3184 6206 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
3185 6207 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
3186 6208 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
3187 6209 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
3188 6210 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
3189 6211 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
3190 6212 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
3191 6213 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
3192 6214 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
3193 6215 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
3194 6216 9.890629 TTATAGTGTAGATTCACTCATTTTGCT 57.109 29.630 2.59 0.00 45.79 3.91
3224 6246 9.658799 GGACTGCATACAAATGTATATAGACAT 57.341 33.333 7.18 7.18 41.92 3.06
3225 6247 8.646900 TGGACTGCATACAAATGTATATAGACA 58.353 33.333 16.64 2.07 39.06 3.41
3226 6248 9.658799 ATGGACTGCATACAAATGTATATAGAC 57.341 33.333 16.64 12.54 39.06 2.59
3232 6254 8.922931 TCAATATGGACTGCATACAAATGTAT 57.077 30.769 0.21 0.21 41.58 2.29
3233 6255 8.744568 TTCAATATGGACTGCATACAAATGTA 57.255 30.769 0.00 0.00 35.38 2.29
3234 6256 7.643569 TTCAATATGGACTGCATACAAATGT 57.356 32.000 0.00 0.00 35.38 2.71
3235 6257 9.188588 GATTTCAATATGGACTGCATACAAATG 57.811 33.333 0.00 0.00 36.09 2.32
3236 6258 9.139734 AGATTTCAATATGGACTGCATACAAAT 57.860 29.630 0.00 0.00 0.00 2.32
3237 6259 8.523915 AGATTTCAATATGGACTGCATACAAA 57.476 30.769 0.00 0.00 0.00 2.83
3238 6260 7.994911 AGAGATTTCAATATGGACTGCATACAA 59.005 33.333 0.00 0.00 0.00 2.41
3239 6261 7.512130 AGAGATTTCAATATGGACTGCATACA 58.488 34.615 0.00 0.00 0.00 2.29
3240 6262 7.976135 AGAGATTTCAATATGGACTGCATAC 57.024 36.000 0.00 0.00 0.00 2.39
3242 6264 8.985315 TTAAGAGATTTCAATATGGACTGCAT 57.015 30.769 0.00 0.00 0.00 3.96
3243 6265 8.843262 CATTAAGAGATTTCAATATGGACTGCA 58.157 33.333 0.00 0.00 0.00 4.41
3244 6266 8.295288 CCATTAAGAGATTTCAATATGGACTGC 58.705 37.037 0.00 0.00 32.62 4.40
3245 6267 8.790718 CCCATTAAGAGATTTCAATATGGACTG 58.209 37.037 0.00 0.00 32.62 3.51
3246 6268 7.449704 GCCCATTAAGAGATTTCAATATGGACT 59.550 37.037 0.00 0.00 32.62 3.85
3247 6269 7.449704 AGCCCATTAAGAGATTTCAATATGGAC 59.550 37.037 0.00 0.00 32.62 4.02
3248 6270 7.529555 AGCCCATTAAGAGATTTCAATATGGA 58.470 34.615 0.00 0.00 32.62 3.41
3249 6271 7.771927 AGCCCATTAAGAGATTTCAATATGG 57.228 36.000 0.00 0.00 0.00 2.74
3262 6284 9.280174 CCGTTTCTAAATATAAGCCCATTAAGA 57.720 33.333 0.00 0.00 0.00 2.10
3263 6285 9.280174 TCCGTTTCTAAATATAAGCCCATTAAG 57.720 33.333 0.00 0.00 0.00 1.85
3264 6286 9.280174 CTCCGTTTCTAAATATAAGCCCATTAA 57.720 33.333 0.00 0.00 0.00 1.40
3265 6287 7.881232 CCTCCGTTTCTAAATATAAGCCCATTA 59.119 37.037 0.00 0.00 0.00 1.90
3266 6288 6.715264 CCTCCGTTTCTAAATATAAGCCCATT 59.285 38.462 0.00 0.00 0.00 3.16
3267 6289 6.238648 CCTCCGTTTCTAAATATAAGCCCAT 58.761 40.000 0.00 0.00 0.00 4.00
3268 6290 5.455612 CCCTCCGTTTCTAAATATAAGCCCA 60.456 44.000 0.00 0.00 0.00 5.36
3269 6291 5.001874 CCCTCCGTTTCTAAATATAAGCCC 58.998 45.833 0.00 0.00 0.00 5.19
3270 6292 5.861727 TCCCTCCGTTTCTAAATATAAGCC 58.138 41.667 0.00 0.00 0.00 4.35
3271 6293 6.522946 ACTCCCTCCGTTTCTAAATATAAGC 58.477 40.000 0.00 0.00 0.00 3.09
3272 6294 9.075678 TCTACTCCCTCCGTTTCTAAATATAAG 57.924 37.037 0.00 0.00 0.00 1.73
3273 6295 9.425248 TTCTACTCCCTCCGTTTCTAAATATAA 57.575 33.333 0.00 0.00 0.00 0.98
3274 6296 9.597681 ATTCTACTCCCTCCGTTTCTAAATATA 57.402 33.333 0.00 0.00 0.00 0.86
3275 6297 7.909485 TTCTACTCCCTCCGTTTCTAAATAT 57.091 36.000 0.00 0.00 0.00 1.28
3327 6349 4.038883 ACTTGGACACAACCTACTGTAGAC 59.961 45.833 16.22 0.00 32.14 2.59
3334 6356 8.813282 CAAATTTAAAACTTGGACACAACCTAC 58.187 33.333 0.00 0.00 32.14 3.18
3363 6385 1.480789 ACCAAAACCGGCAGAAAACT 58.519 45.000 0.00 0.00 0.00 2.66
3431 6454 1.216941 AAACAACCCGAGTACGCACG 61.217 55.000 0.00 0.55 38.29 5.34
3484 6615 3.376636 TCCGGACCAATTCACTATACCA 58.623 45.455 0.00 0.00 0.00 3.25
3485 6616 4.124970 GTTCCGGACCAATTCACTATACC 58.875 47.826 1.83 0.00 0.00 2.73
3634 6765 2.513204 CCTCACTGATGCTGCCGG 60.513 66.667 0.00 0.00 0.00 6.13
3642 6773 1.482593 CTAAACCGCCTCCTCACTGAT 59.517 52.381 0.00 0.00 0.00 2.90
3687 6820 0.389757 TTGGAACCATCGACACGACA 59.610 50.000 0.00 0.00 39.18 4.35
3852 6985 0.185901 ATGTGAACAGCCTGGGTTGT 59.814 50.000 3.29 3.29 41.20 3.32
3879 7012 3.355378 ACTTGATCAAATGCCCGATGAA 58.645 40.909 9.88 0.00 0.00 2.57
3880 7013 3.003394 ACTTGATCAAATGCCCGATGA 57.997 42.857 9.88 0.00 0.00 2.92
3999 7186 1.338020 GCACTGGGTTTATAGCATGCC 59.662 52.381 15.66 0.00 0.00 4.40
4113 7369 7.884877 TGAATGAATGAAAGGAGAAAAGCTCTA 59.115 33.333 0.00 0.00 43.43 2.43
4155 7419 1.066573 CGAGCTTCTTGTCCATGACCT 60.067 52.381 0.00 0.00 0.00 3.85
4314 7600 6.409234 GGACAGGGATTCTGATGTTTATACCA 60.409 42.308 0.00 0.00 46.18 3.25
4388 7676 1.094073 CCAAGCTCCGGCATCTTCTG 61.094 60.000 0.00 0.00 41.70 3.02
4389 7677 1.222936 CCAAGCTCCGGCATCTTCT 59.777 57.895 0.00 0.00 41.70 2.85
4390 7678 3.819188 CCAAGCTCCGGCATCTTC 58.181 61.111 0.00 0.00 41.70 2.87
4397 7685 2.435586 CAGTCTGCCAAGCTCCGG 60.436 66.667 0.00 0.00 0.00 5.14
4399 7687 0.324943 TTACCAGTCTGCCAAGCTCC 59.675 55.000 0.00 0.00 0.00 4.70
4400 7688 1.276421 TCTTACCAGTCTGCCAAGCTC 59.724 52.381 0.00 0.00 0.00 4.09
4401 7689 1.352083 TCTTACCAGTCTGCCAAGCT 58.648 50.000 0.00 0.00 0.00 3.74
4403 7691 4.154918 GTGATTTCTTACCAGTCTGCCAAG 59.845 45.833 0.00 0.11 0.00 3.61
4404 7692 4.072131 GTGATTTCTTACCAGTCTGCCAA 58.928 43.478 0.00 0.00 0.00 4.52
4405 7693 3.559171 GGTGATTTCTTACCAGTCTGCCA 60.559 47.826 0.00 0.00 36.94 4.92
4406 7694 3.010420 GGTGATTTCTTACCAGTCTGCC 58.990 50.000 0.00 0.00 36.94 4.85
4407 7695 3.437049 GTGGTGATTTCTTACCAGTCTGC 59.563 47.826 0.00 0.00 46.87 4.26
4443 7732 1.378514 GAAAGCCCCGGCATCTTCA 60.379 57.895 8.74 0.00 44.88 3.02
4455 7744 7.064016 CACTAATCTCAACTTCTGTAGAAAGCC 59.936 40.741 0.00 0.00 33.07 4.35
4461 7757 6.809196 GTCACCACTAATCTCAACTTCTGTAG 59.191 42.308 0.00 0.00 0.00 2.74
4486 7782 2.287368 GCTTTAACGTTGACCTGTTGGG 60.287 50.000 11.99 0.00 41.89 4.12
4495 7791 4.011698 GGGATAAAGGGCTTTAACGTTGA 58.988 43.478 11.99 0.00 38.38 3.18
4523 7820 3.394719 AGCTCGAGAAGGTGAAGAAAAC 58.605 45.455 18.75 0.00 33.44 2.43
4525 7822 2.028930 GGAGCTCGAGAAGGTGAAGAAA 60.029 50.000 18.75 0.00 35.33 2.52
4564 9383 6.090763 TCGTCACACTGATGAAAATGTATGAC 59.909 38.462 0.00 0.00 39.27 3.06
4719 9540 1.014044 TGAGTTCATGTCGAAGCGGC 61.014 55.000 0.00 0.00 33.09 6.53
4805 9626 4.563580 GGAGAACAAGTACAGGATTCAGCA 60.564 45.833 0.00 0.00 0.00 4.41
4813 9634 4.464244 TCTGAGATGGAGAACAAGTACAGG 59.536 45.833 0.00 0.00 0.00 4.00
4930 9751 2.361104 ATGTTCCGCCGCATGGTT 60.361 55.556 0.00 0.00 37.67 3.67
4959 9780 0.030504 TGCACACAGCCAACATTTCG 59.969 50.000 0.00 0.00 44.83 3.46
4963 9784 0.109153 TCTCTGCACACAGCCAACAT 59.891 50.000 0.00 0.00 44.10 2.71
4965 9786 1.242076 AATCTCTGCACACAGCCAAC 58.758 50.000 0.00 0.00 44.10 3.77
5012 9833 1.429148 ATTTTCGAGTCGATGCCCGC 61.429 55.000 17.34 0.00 35.23 6.13
5014 9835 0.657840 CCATTTTCGAGTCGATGCCC 59.342 55.000 17.34 0.00 35.23 5.36
5029 9850 3.201708 AGCTAGGACATGCTCTTTCCATT 59.798 43.478 0.00 0.00 33.90 3.16
5031 9852 2.093288 CAGCTAGGACATGCTCTTTCCA 60.093 50.000 0.00 0.00 37.44 3.53
5035 9856 3.262915 AGAAACAGCTAGGACATGCTCTT 59.737 43.478 0.00 0.00 37.44 2.85
5038 9859 3.710209 AAGAAACAGCTAGGACATGCT 57.290 42.857 0.00 0.00 40.54 3.79
5044 9865 2.612972 CGCCAGAAAGAAACAGCTAGGA 60.613 50.000 0.00 0.00 0.00 2.94
5052 9873 3.500680 TGGAATGTACGCCAGAAAGAAAC 59.499 43.478 0.00 0.00 0.00 2.78
5053 9874 3.745799 TGGAATGTACGCCAGAAAGAAA 58.254 40.909 0.00 0.00 0.00 2.52
5064 9885 5.268544 CAAATGCTCTGATTGGAATGTACG 58.731 41.667 0.00 0.00 0.00 3.67
5094 9915 3.808726 CCATGAGCTTGAGATAGAGTTGC 59.191 47.826 0.00 0.00 0.00 4.17
5102 9923 2.158856 TGATTCGCCATGAGCTTGAGAT 60.159 45.455 0.00 0.00 40.39 2.75
5107 9928 0.749454 GGGTGATTCGCCATGAGCTT 60.749 55.000 17.69 0.00 40.39 3.74
5111 9932 1.224315 CCTGGGTGATTCGCCATGA 59.776 57.895 17.69 0.74 35.42 3.07
5119 9940 0.706433 AGGTTCATGCCTGGGTGATT 59.294 50.000 0.00 0.00 37.50 2.57
5180 10001 2.254350 CTCGGTCGTGCTGTCGAA 59.746 61.111 0.00 0.00 41.47 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.