Multiple sequence alignment - TraesCS4A01G324400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G324400 chr4A 100.000 3857 0 0 1 3857 612062668 612058812 0.000000e+00 7123.0
1 TraesCS4A01G324400 chr4A 94.737 114 5 1 1830 1942 638760481 638760368 3.960000e-40 176.0
2 TraesCS4A01G324400 chr5D 87.086 2083 183 41 1828 3857 558950586 558948537 0.000000e+00 2278.0
3 TraesCS4A01G324400 chr5D 87.085 813 40 23 1 779 558952639 558951858 0.000000e+00 859.0
4 TraesCS4A01G324400 chr5D 81.153 451 39 32 884 1312 558951848 558951422 1.730000e-83 320.0
5 TraesCS4A01G324400 chr5D 79.375 160 8 13 985 1124 254394050 254394204 5.310000e-14 89.8
6 TraesCS4A01G324400 chr5B 90.564 1526 116 16 1830 3348 693007724 693009228 0.000000e+00 1995.0
7 TraesCS4A01G324400 chr5B 86.007 829 55 26 1 782 693005527 693006341 0.000000e+00 832.0
8 TraesCS4A01G324400 chr5B 76.688 459 39 22 1006 1418 693006648 693007084 3.930000e-45 193.0
9 TraesCS4A01G324400 chr5B 95.575 113 5 0 1830 1942 30596082 30596194 8.510000e-42 182.0
10 TraesCS4A01G324400 chr5B 95.575 113 5 0 1830 1942 326665448 326665336 8.510000e-42 182.0
11 TraesCS4A01G324400 chr5B 95.575 113 5 0 1830 1942 661393335 661393223 8.510000e-42 182.0
12 TraesCS4A01G324400 chr5B 95.122 41 2 0 1464 1504 693007092 693007132 8.940000e-07 65.8
13 TraesCS4A01G324400 chr7B 86.940 268 27 5 1572 1831 742425549 742425816 1.050000e-75 294.0
14 TraesCS4A01G324400 chr7B 93.913 115 6 1 1830 1943 719791755 719791641 5.120000e-39 172.0
15 TraesCS4A01G324400 chr3B 94.783 115 5 1 1830 1943 753114730 753114844 1.100000e-40 178.0
16 TraesCS4A01G324400 chr3A 94.737 114 5 1 1830 1942 86857010 86857123 3.960000e-40 176.0
17 TraesCS4A01G324400 chr2A 94.737 114 5 1 1830 1942 491499869 491499982 3.960000e-40 176.0
18 TraesCS4A01G324400 chr6B 94.643 112 6 0 1831 1942 423830665 423830554 1.420000e-39 174.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G324400 chr4A 612058812 612062668 3856 True 7123.000000 7123 100.00000 1 3857 1 chr4A.!!$R1 3856
1 TraesCS4A01G324400 chr5D 558948537 558952639 4102 True 1152.333333 2278 85.10800 1 3857 3 chr5D.!!$R1 3856
2 TraesCS4A01G324400 chr5B 693005527 693009228 3701 False 771.450000 1995 87.09525 1 3348 4 chr5B.!!$F2 3347

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
850 923 0.035630 GCCCATATAGCCAGGCTCAG 60.036 60.0 20.38 6.29 42.34 3.35 F
1639 2141 0.040781 GCCGTTGTATTTGCGTGTGT 60.041 50.0 0.00 0.00 0.00 3.72 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2718 3448 0.53120 CGAAAGGCCGGTTAGTCTCT 59.469 55.0 1.90 0.00 0.00 3.10 R
2992 3729 0.17691 TATTCCACGCCAGCGATTCA 59.823 50.0 20.32 0.05 42.83 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
329 345 4.176851 GGCGTCGTCCTCGTCCTC 62.177 72.222 0.00 0.00 38.33 3.71
680 752 1.413812 AGGCCAGCAAAAGAAAACCAG 59.586 47.619 5.01 0.00 0.00 4.00
691 763 6.729187 CAAAAGAAAACCAGAGTCCAAGTAG 58.271 40.000 0.00 0.00 0.00 2.57
692 764 4.625607 AGAAAACCAGAGTCCAAGTAGG 57.374 45.455 0.00 0.00 39.47 3.18
693 765 3.328050 AGAAAACCAGAGTCCAAGTAGGG 59.672 47.826 0.00 0.00 38.24 3.53
694 766 2.417719 AACCAGAGTCCAAGTAGGGT 57.582 50.000 0.00 0.00 38.24 4.34
695 767 1.939980 ACCAGAGTCCAAGTAGGGTC 58.060 55.000 0.00 0.00 38.24 4.46
696 768 1.196012 CCAGAGTCCAAGTAGGGTCC 58.804 60.000 0.00 0.00 38.24 4.46
697 769 0.818296 CAGAGTCCAAGTAGGGTCCG 59.182 60.000 0.00 0.00 38.24 4.79
698 770 0.324460 AGAGTCCAAGTAGGGTCCGG 60.324 60.000 0.00 0.00 38.24 5.14
699 771 0.324091 GAGTCCAAGTAGGGTCCGGA 60.324 60.000 0.00 0.00 38.24 5.14
700 772 0.614134 AGTCCAAGTAGGGTCCGGAC 60.614 60.000 27.04 27.04 45.34 4.79
720 793 2.282180 GGCAAGGAACCGGCTTCA 60.282 61.111 0.00 0.00 0.00 3.02
734 807 1.376424 CTTCATGTCGTGCTGGGCT 60.376 57.895 0.00 0.00 0.00 5.19
735 808 1.364626 CTTCATGTCGTGCTGGGCTC 61.365 60.000 0.00 0.00 0.00 4.70
759 832 0.835971 TCAGACTTGGCCTGCTACCA 60.836 55.000 3.32 0.00 34.65 3.25
779 852 1.842007 CCCAGCTGACAGCCCATAT 59.158 57.895 23.74 1.68 43.77 1.78
780 853 1.059098 CCCAGCTGACAGCCCATATA 58.941 55.000 23.74 0.00 43.77 0.86
781 854 1.002888 CCCAGCTGACAGCCCATATAG 59.997 57.143 23.74 5.07 43.77 1.31
782 855 1.610102 CCAGCTGACAGCCCATATAGC 60.610 57.143 23.74 0.00 43.77 2.97
783 856 0.689623 AGCTGACAGCCCATATAGCC 59.310 55.000 23.74 0.00 43.77 3.93
784 857 0.397941 GCTGACAGCCCATATAGCCA 59.602 55.000 17.01 0.00 34.48 4.75
785 858 1.610102 GCTGACAGCCCATATAGCCAG 60.610 57.143 17.01 0.00 34.48 4.85
790 863 2.381445 GCCCATATAGCCAGGCTCT 58.619 57.895 20.38 11.60 42.34 4.09
791 864 0.251634 GCCCATATAGCCAGGCTCTC 59.748 60.000 20.38 0.00 42.34 3.20
792 865 1.649321 CCCATATAGCCAGGCTCTCA 58.351 55.000 20.38 0.00 40.44 3.27
793 866 1.554160 CCCATATAGCCAGGCTCTCAG 59.446 57.143 20.38 7.08 40.44 3.35
794 867 2.533916 CCATATAGCCAGGCTCTCAGA 58.466 52.381 20.38 0.00 40.44 3.27
795 868 2.233431 CCATATAGCCAGGCTCTCAGAC 59.767 54.545 20.38 0.00 40.44 3.51
796 869 2.002505 TATAGCCAGGCTCTCAGACC 57.997 55.000 20.38 0.00 40.44 3.85
797 870 0.762461 ATAGCCAGGCTCTCAGACCC 60.762 60.000 20.38 0.00 40.44 4.46
798 871 4.154347 GCCAGGCTCTCAGACCCG 62.154 72.222 3.29 0.00 0.00 5.28
799 872 3.465403 CCAGGCTCTCAGACCCGG 61.465 72.222 0.00 0.00 0.00 5.73
800 873 2.681778 CAGGCTCTCAGACCCGGT 60.682 66.667 0.00 0.00 0.00 5.28
801 874 1.379977 CAGGCTCTCAGACCCGGTA 60.380 63.158 0.00 0.00 0.00 4.02
802 875 0.970937 CAGGCTCTCAGACCCGGTAA 60.971 60.000 0.00 0.00 0.00 2.85
803 876 0.684805 AGGCTCTCAGACCCGGTAAG 60.685 60.000 0.00 0.00 0.00 2.34
804 877 1.677637 GGCTCTCAGACCCGGTAAGG 61.678 65.000 0.00 0.00 40.63 2.69
805 878 0.683504 GCTCTCAGACCCGGTAAGGA 60.684 60.000 0.00 0.00 45.00 3.36
806 879 1.394618 CTCTCAGACCCGGTAAGGAG 58.605 60.000 0.00 2.21 45.00 3.69
807 880 0.683504 TCTCAGACCCGGTAAGGAGC 60.684 60.000 0.00 0.00 45.00 4.70
808 881 1.677637 CTCAGACCCGGTAAGGAGCC 61.678 65.000 0.00 0.00 45.00 4.70
815 888 4.858680 GGTAAGGAGCCGGCTGCC 62.859 72.222 40.23 33.26 42.71 4.85
816 889 3.787001 GTAAGGAGCCGGCTGCCT 61.787 66.667 40.23 34.69 42.71 4.75
817 890 3.785859 TAAGGAGCCGGCTGCCTG 61.786 66.667 40.23 11.83 42.71 4.85
827 900 4.410743 GCTGCCTGCTTGCCGTTC 62.411 66.667 0.00 0.00 38.95 3.95
828 901 2.979676 CTGCCTGCTTGCCGTTCA 60.980 61.111 0.00 0.00 0.00 3.18
829 902 2.282391 TGCCTGCTTGCCGTTCAT 60.282 55.556 0.00 0.00 0.00 2.57
830 903 1.002746 TGCCTGCTTGCCGTTCATA 60.003 52.632 0.00 0.00 0.00 2.15
831 904 1.026182 TGCCTGCTTGCCGTTCATAG 61.026 55.000 0.00 0.00 0.00 2.23
832 905 1.723870 CCTGCTTGCCGTTCATAGC 59.276 57.895 0.00 0.00 32.87 2.97
833 906 1.718757 CCTGCTTGCCGTTCATAGCC 61.719 60.000 0.00 0.00 31.94 3.93
834 907 1.718757 CTGCTTGCCGTTCATAGCCC 61.719 60.000 0.00 0.00 31.94 5.19
835 908 1.748879 GCTTGCCGTTCATAGCCCA 60.749 57.895 0.00 0.00 0.00 5.36
836 909 1.103398 GCTTGCCGTTCATAGCCCAT 61.103 55.000 0.00 0.00 0.00 4.00
837 910 1.813862 GCTTGCCGTTCATAGCCCATA 60.814 52.381 0.00 0.00 0.00 2.74
838 911 2.783135 CTTGCCGTTCATAGCCCATAT 58.217 47.619 0.00 0.00 0.00 1.78
839 912 3.868369 GCTTGCCGTTCATAGCCCATATA 60.868 47.826 0.00 0.00 0.00 0.86
840 913 3.610040 TGCCGTTCATAGCCCATATAG 57.390 47.619 0.00 0.00 0.00 1.31
841 914 2.280628 GCCGTTCATAGCCCATATAGC 58.719 52.381 0.00 0.00 0.00 2.97
842 915 2.906354 CCGTTCATAGCCCATATAGCC 58.094 52.381 0.00 0.00 0.00 3.93
843 916 2.236146 CCGTTCATAGCCCATATAGCCA 59.764 50.000 0.00 0.00 0.00 4.75
844 917 3.525537 CGTTCATAGCCCATATAGCCAG 58.474 50.000 0.00 0.00 0.00 4.85
845 918 3.679917 CGTTCATAGCCCATATAGCCAGG 60.680 52.174 0.00 0.00 0.00 4.45
846 919 1.839994 TCATAGCCCATATAGCCAGGC 59.160 52.381 1.84 1.84 46.13 4.85
849 922 2.069776 GCCCATATAGCCAGGCTCA 58.930 57.895 20.38 7.82 42.34 4.26
850 923 0.035630 GCCCATATAGCCAGGCTCAG 60.036 60.000 20.38 6.29 42.34 3.35
851 924 1.356124 CCCATATAGCCAGGCTCAGT 58.644 55.000 20.38 8.25 40.44 3.41
852 925 1.701847 CCCATATAGCCAGGCTCAGTT 59.298 52.381 20.38 4.19 40.44 3.16
853 926 2.289945 CCCATATAGCCAGGCTCAGTTC 60.290 54.545 20.38 0.00 40.44 3.01
854 927 2.369860 CCATATAGCCAGGCTCAGTTCA 59.630 50.000 20.38 0.00 40.44 3.18
855 928 3.556633 CCATATAGCCAGGCTCAGTTCAG 60.557 52.174 20.38 2.64 40.44 3.02
856 929 0.179936 ATAGCCAGGCTCAGTTCAGC 59.820 55.000 20.38 0.00 40.44 4.26
862 935 2.749441 GCTCAGTTCAGCCCAGGC 60.749 66.667 0.00 0.00 42.33 4.85
863 936 2.045536 CTCAGTTCAGCCCAGGCC 60.046 66.667 4.70 0.00 43.17 5.19
864 937 2.530151 TCAGTTCAGCCCAGGCCT 60.530 61.111 0.00 0.00 43.17 5.19
865 938 2.134630 CTCAGTTCAGCCCAGGCCTT 62.135 60.000 0.00 0.00 43.17 4.35
866 939 1.228675 CAGTTCAGCCCAGGCCTTT 60.229 57.895 0.00 0.00 43.17 3.11
867 940 0.829182 CAGTTCAGCCCAGGCCTTTT 60.829 55.000 0.00 0.00 43.17 2.27
868 941 0.105504 AGTTCAGCCCAGGCCTTTTT 60.106 50.000 0.00 0.00 43.17 1.94
869 942 0.318441 GTTCAGCCCAGGCCTTTTTC 59.682 55.000 0.00 0.00 43.17 2.29
870 943 0.188342 TTCAGCCCAGGCCTTTTTCT 59.812 50.000 0.00 0.00 43.17 2.52
871 944 0.251341 TCAGCCCAGGCCTTTTTCTC 60.251 55.000 0.00 0.00 43.17 2.87
872 945 0.540365 CAGCCCAGGCCTTTTTCTCA 60.540 55.000 0.00 0.00 43.17 3.27
873 946 0.188342 AGCCCAGGCCTTTTTCTCAA 59.812 50.000 0.00 0.00 43.17 3.02
874 947 1.047801 GCCCAGGCCTTTTTCTCAAA 58.952 50.000 0.00 0.00 34.56 2.69
875 948 1.416030 GCCCAGGCCTTTTTCTCAAAA 59.584 47.619 0.00 0.00 34.56 2.44
876 949 2.158827 GCCCAGGCCTTTTTCTCAAAAA 60.159 45.455 0.00 0.00 38.55 1.94
898 971 0.105504 AAAAAGTTGAGCCCAGGCCT 60.106 50.000 0.00 0.00 43.17 5.19
923 996 2.926200 CAGAGCGTCGTCATTCTCATTT 59.074 45.455 0.00 0.00 0.00 2.32
924 997 3.000277 CAGAGCGTCGTCATTCTCATTTC 60.000 47.826 0.00 0.00 0.00 2.17
927 1000 1.933853 CGTCGTCATTCTCATTTCCCC 59.066 52.381 0.00 0.00 0.00 4.81
929 1002 2.939103 GTCGTCATTCTCATTTCCCCTG 59.061 50.000 0.00 0.00 0.00 4.45
931 1004 2.681976 CGTCATTCTCATTTCCCCTGCT 60.682 50.000 0.00 0.00 0.00 4.24
932 1005 3.359950 GTCATTCTCATTTCCCCTGCTT 58.640 45.455 0.00 0.00 0.00 3.91
933 1006 3.379688 GTCATTCTCATTTCCCCTGCTTC 59.620 47.826 0.00 0.00 0.00 3.86
934 1007 2.514458 TTCTCATTTCCCCTGCTTCC 57.486 50.000 0.00 0.00 0.00 3.46
935 1008 1.371467 TCTCATTTCCCCTGCTTCCA 58.629 50.000 0.00 0.00 0.00 3.53
936 1009 1.283029 TCTCATTTCCCCTGCTTCCAG 59.717 52.381 0.00 0.00 38.85 3.86
937 1010 1.283029 CTCATTTCCCCTGCTTCCAGA 59.717 52.381 0.00 0.00 41.77 3.86
938 1011 1.710244 TCATTTCCCCTGCTTCCAGAA 59.290 47.619 0.00 0.00 41.77 3.02
939 1012 1.821136 CATTTCCCCTGCTTCCAGAAC 59.179 52.381 0.00 0.00 41.77 3.01
940 1013 0.850100 TTTCCCCTGCTTCCAGAACA 59.150 50.000 0.00 0.00 41.77 3.18
942 1015 1.303643 CCCCTGCTTCCAGAACACC 60.304 63.158 0.00 0.00 41.77 4.16
943 1016 1.455849 CCCTGCTTCCAGAACACCA 59.544 57.895 0.00 0.00 41.77 4.17
946 1019 0.179020 CTGCTTCCAGAACACCACCA 60.179 55.000 0.00 0.00 41.77 4.17
947 1020 0.465460 TGCTTCCAGAACACCACCAC 60.465 55.000 0.00 0.00 0.00 4.16
948 1021 0.179018 GCTTCCAGAACACCACCACT 60.179 55.000 0.00 0.00 0.00 4.00
950 1023 0.472471 TTCCAGAACACCACCACTCC 59.528 55.000 0.00 0.00 0.00 3.85
952 1025 1.073199 CAGAACACCACCACTCCCC 59.927 63.158 0.00 0.00 0.00 4.81
953 1026 1.385347 AGAACACCACCACTCCCCA 60.385 57.895 0.00 0.00 0.00 4.96
954 1027 1.228154 GAACACCACCACTCCCCAC 60.228 63.158 0.00 0.00 0.00 4.61
955 1028 3.114825 AACACCACCACTCCCCACG 62.115 63.158 0.00 0.00 0.00 4.94
956 1029 4.329545 CACCACCACTCCCCACGG 62.330 72.222 0.00 0.00 0.00 4.94
957 1030 4.567597 ACCACCACTCCCCACGGA 62.568 66.667 0.00 0.00 36.45 4.69
960 1033 4.608774 ACCACTCCCCACGGACGA 62.609 66.667 0.00 0.00 33.32 4.20
962 1035 2.989824 CACTCCCCACGGACGACT 60.990 66.667 0.00 0.00 33.32 4.18
963 1036 2.675772 ACTCCCCACGGACGACTC 60.676 66.667 0.00 0.00 33.32 3.36
964 1037 2.361357 CTCCCCACGGACGACTCT 60.361 66.667 0.00 0.00 33.32 3.24
965 1038 1.977544 CTCCCCACGGACGACTCTT 60.978 63.158 0.00 0.00 33.32 2.85
966 1039 1.935327 CTCCCCACGGACGACTCTTC 61.935 65.000 0.00 0.00 33.32 2.87
967 1040 1.977544 CCCCACGGACGACTCTTCT 60.978 63.158 0.00 0.00 0.00 2.85
972 1045 2.100603 GGACGACTCTTCTCGCCG 59.899 66.667 0.00 0.00 37.15 6.46
988 1061 1.883084 CCGCGCAAACCCTAGCTAG 60.883 63.158 14.20 14.20 0.00 3.42
989 1062 2.526120 CGCGCAAACCCTAGCTAGC 61.526 63.158 15.74 6.62 0.00 3.42
991 1064 0.104304 GCGCAAACCCTAGCTAGCTA 59.896 55.000 22.85 22.85 0.00 3.32
992 1065 1.472728 GCGCAAACCCTAGCTAGCTAA 60.473 52.381 24.20 9.41 0.00 3.09
993 1066 2.901249 CGCAAACCCTAGCTAGCTAAA 58.099 47.619 24.20 6.47 0.00 1.85
994 1067 3.467803 CGCAAACCCTAGCTAGCTAAAT 58.532 45.455 24.20 10.56 0.00 1.40
995 1068 3.495001 CGCAAACCCTAGCTAGCTAAATC 59.505 47.826 24.20 9.13 0.00 2.17
996 1069 4.709250 GCAAACCCTAGCTAGCTAAATCT 58.291 43.478 24.20 7.90 0.00 2.40
1145 1419 0.462375 CGTCCCCGGTGTGATAATGA 59.538 55.000 0.00 0.00 0.00 2.57
1150 1424 2.698797 CCCCGGTGTGATAATGACTAGT 59.301 50.000 0.00 0.00 0.00 2.57
1151 1425 3.893200 CCCCGGTGTGATAATGACTAGTA 59.107 47.826 0.00 0.00 0.00 1.82
1152 1426 4.022242 CCCCGGTGTGATAATGACTAGTAG 60.022 50.000 0.00 0.00 0.00 2.57
1153 1427 4.583489 CCCGGTGTGATAATGACTAGTAGT 59.417 45.833 1.37 1.37 0.00 2.73
1154 1428 5.766670 CCCGGTGTGATAATGACTAGTAGTA 59.233 44.000 1.88 0.00 0.00 1.82
1155 1429 6.072618 CCCGGTGTGATAATGACTAGTAGTAG 60.073 46.154 1.88 2.87 0.00 2.57
1167 1441 5.826208 TGACTAGTAGTAGATTTGATCCGCA 59.174 40.000 11.68 0.00 0.00 5.69
1168 1442 6.490381 TGACTAGTAGTAGATTTGATCCGCAT 59.510 38.462 11.68 0.00 0.00 4.73
1206 1480 2.231478 GACCTGAGACGATTTGGTGAGA 59.769 50.000 0.00 0.00 0.00 3.27
1208 1482 2.254459 CTGAGACGATTTGGTGAGACG 58.746 52.381 0.00 0.00 0.00 4.18
1245 1519 3.721706 GGAGTGGTCAGCCCCCTG 61.722 72.222 0.00 0.00 40.54 4.45
1277 1561 8.697846 TTAGGTGTTACAATTAGTGATTCTCG 57.302 34.615 0.00 0.00 0.00 4.04
1303 1587 3.117171 CGCTGAGCTGCTGGTGTC 61.117 66.667 7.01 0.00 0.00 3.67
1307 1591 0.743701 CTGAGCTGCTGGTGTCATCC 60.744 60.000 7.01 0.00 0.00 3.51
1313 1597 4.838152 CTGGTGTCATCCGGCCCG 62.838 72.222 0.00 0.00 0.00 6.13
1324 1608 1.966451 CCGGCCCGCCTAATTGATC 60.966 63.158 0.00 0.00 0.00 2.92
1325 1609 1.071471 CGGCCCGCCTAATTGATCT 59.929 57.895 3.84 0.00 0.00 2.75
1326 1610 0.535102 CGGCCCGCCTAATTGATCTT 60.535 55.000 3.84 0.00 0.00 2.40
1327 1611 1.239347 GGCCCGCCTAATTGATCTTC 58.761 55.000 0.00 0.00 0.00 2.87
1330 1614 2.746472 GCCCGCCTAATTGATCTTCTGT 60.746 50.000 0.00 0.00 0.00 3.41
1359 1672 2.675658 ATTGCTGGTGTAGGTTGGTT 57.324 45.000 0.00 0.00 0.00 3.67
1423 1738 2.747446 CACCCTGTCCTTCATTTTACCG 59.253 50.000 0.00 0.00 0.00 4.02
1425 1740 3.007635 CCCTGTCCTTCATTTTACCGAC 58.992 50.000 0.00 0.00 0.00 4.79
1427 1742 4.069304 CCTGTCCTTCATTTTACCGACAA 58.931 43.478 0.00 0.00 30.44 3.18
1438 1753 4.389576 CCGACAACTGCGCCTTGC 62.390 66.667 4.18 2.48 46.70 4.01
1496 1819 3.057245 GGTTGGAGCTCACAAGGAAAATC 60.057 47.826 17.19 3.97 0.00 2.17
1534 1933 5.934625 TCCACTCTTCTTTCTTTACAGATGC 59.065 40.000 0.00 0.00 0.00 3.91
1558 1957 1.136305 GCACGAGCAGAACCACCTATA 59.864 52.381 0.00 0.00 41.58 1.31
1560 1959 3.643763 CACGAGCAGAACCACCTATATC 58.356 50.000 0.00 0.00 0.00 1.63
1561 1960 2.293677 ACGAGCAGAACCACCTATATCG 59.706 50.000 0.00 0.00 0.00 2.92
1562 1961 2.678324 GAGCAGAACCACCTATATCGC 58.322 52.381 0.00 0.00 0.00 4.58
1564 1963 3.497332 AGCAGAACCACCTATATCGCTA 58.503 45.455 0.00 0.00 0.00 4.26
1565 1964 4.090090 AGCAGAACCACCTATATCGCTAT 58.910 43.478 0.00 0.00 0.00 2.97
1566 1965 4.081972 AGCAGAACCACCTATATCGCTATG 60.082 45.833 0.00 0.00 0.00 2.23
1578 2079 4.532490 GCTATGGCGTGGCTAACA 57.468 55.556 7.91 0.00 0.00 2.41
1610 2112 5.130477 TCCCCTTTTACTGGTCTATCATCAC 59.870 44.000 0.00 0.00 0.00 3.06
1621 2123 5.759763 TGGTCTATCATCACAACATGTATGC 59.240 40.000 0.00 0.00 0.00 3.14
1633 2135 4.027572 ACATGTATGCCGTTGTATTTGC 57.972 40.909 0.00 0.00 0.00 3.68
1639 2141 0.040781 GCCGTTGTATTTGCGTGTGT 60.041 50.000 0.00 0.00 0.00 3.72
1641 2143 2.349627 GCCGTTGTATTTGCGTGTGTTA 60.350 45.455 0.00 0.00 0.00 2.41
1643 2145 3.475242 CGTTGTATTTGCGTGTGTTAGG 58.525 45.455 0.00 0.00 0.00 2.69
1644 2146 3.184783 CGTTGTATTTGCGTGTGTTAGGA 59.815 43.478 0.00 0.00 0.00 2.94
1645 2147 4.318903 CGTTGTATTTGCGTGTGTTAGGAA 60.319 41.667 0.00 0.00 0.00 3.36
1647 2149 5.098218 TGTATTTGCGTGTGTTAGGAAAC 57.902 39.130 0.00 0.00 36.07 2.78
1677 2181 2.555199 GTCACAGGACTGATGGTATGC 58.445 52.381 6.29 0.00 40.99 3.14
1683 2187 3.110705 AGGACTGATGGTATGCTTCTGT 58.889 45.455 0.00 0.00 0.00 3.41
1716 2221 6.375945 AATTGATTTCCTTGTTTGGTTTGC 57.624 33.333 0.00 0.00 0.00 3.68
1778 2283 2.424601 CTGACTGGTTGGTGCATTATGG 59.575 50.000 0.00 0.00 0.00 2.74
1784 2289 0.040942 TTGGTGCATTATGGGCCACT 59.959 50.000 9.28 0.22 0.00 4.00
1786 2291 1.394266 GGTGCATTATGGGCCACTGG 61.394 60.000 9.28 0.00 0.00 4.00
1826 2546 6.885922 AGAACTGGTGAGTAGTAAGTTGTTT 58.114 36.000 0.00 0.00 31.45 2.83
1851 2571 1.189752 CTGAGCAGGAGCACCTCTTA 58.810 55.000 0.00 0.00 45.94 2.10
1925 2654 7.801716 ATTCTACTGTTTTGAAGTGCTTGTA 57.198 32.000 0.00 0.00 0.00 2.41
1926 2655 6.598753 TCTACTGTTTTGAAGTGCTTGTAC 57.401 37.500 0.00 0.00 0.00 2.90
1930 2659 4.654015 TGTTTTGAAGTGCTTGTACGAAC 58.346 39.130 0.00 0.00 0.00 3.95
1945 2674 3.878086 ACGAACATGTGTGTGAATGTC 57.122 42.857 0.00 0.00 38.92 3.06
1947 2676 3.876914 ACGAACATGTGTGTGAATGTCTT 59.123 39.130 0.00 0.00 38.92 3.01
1948 2677 4.213674 CGAACATGTGTGTGAATGTCTTG 58.786 43.478 0.00 0.00 38.92 3.02
1949 2678 4.024977 CGAACATGTGTGTGAATGTCTTGA 60.025 41.667 0.00 0.00 38.92 3.02
1950 2679 5.503846 CGAACATGTGTGTGAATGTCTTGAA 60.504 40.000 0.00 0.00 38.92 2.69
2010 2739 2.455557 TGTGCCATTTCCCCTTATGTG 58.544 47.619 0.00 0.00 0.00 3.21
2020 2749 2.094675 CCCCTTATGTGTTGCCTTGAG 58.905 52.381 0.00 0.00 0.00 3.02
2031 2760 0.740868 TGCCTTGAGATGTGTAGCGC 60.741 55.000 0.00 0.00 0.00 5.92
2046 2775 1.386533 AGCGCCCTGAATTGAAGATG 58.613 50.000 2.29 0.00 0.00 2.90
2052 2781 4.179298 GCCCTGAATTGAAGATGAAAAGC 58.821 43.478 0.00 0.00 0.00 3.51
2053 2782 4.322198 GCCCTGAATTGAAGATGAAAAGCA 60.322 41.667 0.00 0.00 0.00 3.91
2054 2783 5.786311 CCCTGAATTGAAGATGAAAAGCAA 58.214 37.500 0.00 0.00 0.00 3.91
2086 2816 3.952535 CAGGTTTACTGTGTCAAAGTGC 58.047 45.455 5.87 0.00 42.42 4.40
2127 2857 5.555017 AGTGAATCTTGTACTGTCTTGCAT 58.445 37.500 0.00 0.00 0.00 3.96
2131 2861 6.368791 TGAATCTTGTACTGTCTTGCATGTAC 59.631 38.462 0.00 4.07 34.88 2.90
2132 2862 5.468540 TCTTGTACTGTCTTGCATGTACT 57.531 39.130 0.00 0.00 35.12 2.73
2134 2864 4.600692 TGTACTGTCTTGCATGTACTGT 57.399 40.909 14.05 14.05 35.12 3.55
2135 2865 4.556233 TGTACTGTCTTGCATGTACTGTC 58.444 43.478 13.44 9.12 35.12 3.51
2136 2866 4.280929 TGTACTGTCTTGCATGTACTGTCT 59.719 41.667 13.44 1.19 35.12 3.41
2137 2867 4.342862 ACTGTCTTGCATGTACTGTCTT 57.657 40.909 0.00 0.00 0.00 3.01
2138 2868 4.060900 ACTGTCTTGCATGTACTGTCTTG 58.939 43.478 0.00 0.00 0.00 3.02
2139 2869 2.807967 TGTCTTGCATGTACTGTCTTGC 59.192 45.455 0.00 9.51 38.43 4.01
2140 2870 2.807967 GTCTTGCATGTACTGTCTTGCA 59.192 45.455 12.95 12.95 43.30 4.08
2141 2871 3.438087 GTCTTGCATGTACTGTCTTGCAT 59.562 43.478 15.72 2.93 43.98 3.96
2142 2872 3.437741 TCTTGCATGTACTGTCTTGCATG 59.562 43.478 15.72 16.57 43.98 4.06
2145 2875 4.516323 TGCATGTACTGTCTTGCATGTAT 58.484 39.130 12.95 0.00 41.30 2.29
2146 2876 4.571984 TGCATGTACTGTCTTGCATGTATC 59.428 41.667 12.95 0.00 41.30 2.24
2147 2877 4.024556 GCATGTACTGTCTTGCATGTATCC 60.025 45.833 12.59 0.00 40.37 2.59
2148 2878 3.780902 TGTACTGTCTTGCATGTATCCG 58.219 45.455 0.00 0.00 0.00 4.18
2149 2879 3.194755 TGTACTGTCTTGCATGTATCCGT 59.805 43.478 0.00 0.00 0.00 4.69
2150 2880 3.334583 ACTGTCTTGCATGTATCCGTT 57.665 42.857 0.00 0.00 0.00 4.44
2151 2881 3.002791 ACTGTCTTGCATGTATCCGTTG 58.997 45.455 0.00 0.00 0.00 4.10
2152 2882 2.352651 CTGTCTTGCATGTATCCGTTGG 59.647 50.000 0.00 0.00 0.00 3.77
2375 3105 1.826720 GCCCAAATCCAAGCAGATCAA 59.173 47.619 0.00 0.00 0.00 2.57
2396 3126 2.776536 AGGAGGAGGACAAAGATGATGG 59.223 50.000 0.00 0.00 0.00 3.51
2397 3127 2.774234 GGAGGAGGACAAAGATGATGGA 59.226 50.000 0.00 0.00 0.00 3.41
2472 3202 2.121385 TCCACCTGCTGCCTCTCT 59.879 61.111 0.00 0.00 0.00 3.10
2604 3334 2.358737 CACTGGTTCGTGAGCCCC 60.359 66.667 0.00 0.00 37.06 5.80
2622 3352 1.833630 CCCTACATCCACAAGCTGAGA 59.166 52.381 0.00 0.00 0.00 3.27
2626 3356 1.911357 ACATCCACAAGCTGAGATGGA 59.089 47.619 15.74 13.16 45.12 3.41
2628 3358 0.907486 TCCACAAGCTGAGATGGAGG 59.093 55.000 4.77 0.00 36.30 4.30
2640 3370 0.842635 GATGGAGGCAGGGTTCAGAT 59.157 55.000 0.00 0.00 0.00 2.90
2664 3394 1.687563 TCGAGGCGGAGATAATGTCA 58.312 50.000 0.00 0.00 0.00 3.58
2718 3448 4.783621 GCTGACATCAGGCCCGCA 62.784 66.667 10.81 0.00 43.94 5.69
2754 3484 2.047179 GTCACCTTCAGGGCCGAC 60.047 66.667 0.00 0.00 40.27 4.79
2874 3604 3.253188 TGTGATGGAAGCTACTGTTTTGC 59.747 43.478 0.00 0.00 0.00 3.68
2927 3658 3.314541 TCGAGTCCTTTTTCCTGTAGC 57.685 47.619 0.00 0.00 0.00 3.58
2963 3700 5.995897 AGAATTTGTGGTATAAGGTATCGCC 59.004 40.000 0.00 0.00 37.58 5.54
2992 3729 7.496591 TGTTTTTAGTTCAGTACGGAGATTTGT 59.503 33.333 0.00 0.00 0.00 2.83
3022 3762 5.570234 TGGCGTGGAATATTTTTAACTCC 57.430 39.130 0.00 0.00 0.00 3.85
3053 3793 8.122330 CGATTTTGAATAAGTAGCAGCAACATA 58.878 33.333 0.00 0.00 0.00 2.29
3054 3794 9.956720 GATTTTGAATAAGTAGCAGCAACATAT 57.043 29.630 0.00 0.00 0.00 1.78
3061 3802 3.713764 AGTAGCAGCAACATATCCCTCTT 59.286 43.478 0.00 0.00 0.00 2.85
3062 3803 3.659183 AGCAGCAACATATCCCTCTTT 57.341 42.857 0.00 0.00 0.00 2.52
3074 3815 2.956132 TCCCTCTTTTGTGATTGCCAA 58.044 42.857 0.00 0.00 0.00 4.52
3083 3824 8.537049 TCTTTTGTGATTGCCAATTTAGATTG 57.463 30.769 0.00 0.00 41.87 2.67
3104 3845 3.199727 TGGCAGTGGTATCTATTTGCAGA 59.800 43.478 0.00 0.00 33.42 4.26
3119 3860 6.680874 ATTTGCAGATTCTCTTGAAGCTAG 57.319 37.500 0.00 0.00 45.85 3.42
3132 3873 5.241506 TCTTGAAGCTAGGGAAAACATTGTG 59.758 40.000 0.00 0.00 0.00 3.33
3140 3884 2.223711 GGGAAAACATTGTGCGACTTGT 60.224 45.455 0.00 0.00 0.00 3.16
3148 3892 6.349973 ACATTGTGCGACTTGTTATCTATG 57.650 37.500 0.00 0.00 0.00 2.23
3163 3907 7.010771 TGTTATCTATGGTGCCTACATACTCT 58.989 38.462 0.00 0.00 0.00 3.24
3182 3926 9.578439 CATACTCTTGATCGATTAGCATGATTA 57.422 33.333 0.00 0.93 28.55 1.75
3197 3941 5.413833 AGCATGATTACCACAACTTTCTCTG 59.586 40.000 0.00 0.00 0.00 3.35
3211 3955 5.065914 ACTTTCTCTGCTTGCATTTGAGTA 58.934 37.500 9.21 0.00 0.00 2.59
3218 3962 7.718314 TCTCTGCTTGCATTTGAGTATGATATT 59.282 33.333 9.21 0.00 0.00 1.28
3219 3963 7.645402 TCTGCTTGCATTTGAGTATGATATTG 58.355 34.615 0.00 0.00 0.00 1.90
3279 4046 1.599542 GTCTGCTTCGTCTTGCAACTT 59.400 47.619 0.00 0.00 38.81 2.66
3280 4047 1.867233 TCTGCTTCGTCTTGCAACTTC 59.133 47.619 0.00 0.00 38.81 3.01
3281 4048 1.599071 CTGCTTCGTCTTGCAACTTCA 59.401 47.619 0.00 0.00 38.81 3.02
3297 4064 5.626955 GCAACTTCATCAGAAACAAAGCTAC 59.373 40.000 0.00 0.00 32.35 3.58
3299 4066 5.376625 ACTTCATCAGAAACAAAGCTACCA 58.623 37.500 0.00 0.00 32.35 3.25
3322 4089 7.014230 ACCAAAAGCTATCTTACACACACAAAT 59.986 33.333 0.00 0.00 31.02 2.32
3361 4130 1.019673 ATCCTGTGATGAATGCGTGC 58.980 50.000 0.00 0.00 0.00 5.34
3362 4131 1.061411 CCTGTGATGAATGCGTGCG 59.939 57.895 0.00 0.00 0.00 5.34
3363 4132 1.638388 CCTGTGATGAATGCGTGCGT 61.638 55.000 0.00 0.00 0.00 5.24
3364 4133 0.247419 CTGTGATGAATGCGTGCGTC 60.247 55.000 0.00 0.00 0.00 5.19
3368 4137 0.721154 GATGAATGCGTGCGTCTGAA 59.279 50.000 0.00 0.00 0.00 3.02
3374 4152 1.790755 TGCGTGCGTCTGAATTAGTT 58.209 45.000 0.00 0.00 0.00 2.24
3377 4155 2.156891 GCGTGCGTCTGAATTAGTTTCA 59.843 45.455 0.00 0.00 42.09 2.69
3389 4167 6.359804 TGAATTAGTTTCAGGATAGCTGCAT 58.640 36.000 1.02 0.00 39.44 3.96
3394 4172 4.768968 AGTTTCAGGATAGCTGCATGTTTT 59.231 37.500 1.02 0.00 0.00 2.43
3395 4173 5.244626 AGTTTCAGGATAGCTGCATGTTTTT 59.755 36.000 1.02 0.00 0.00 1.94
3396 4174 4.970662 TCAGGATAGCTGCATGTTTTTC 57.029 40.909 1.02 0.00 0.00 2.29
3407 4185 4.121317 TGCATGTTTTTCCTGCTTCAAAG 58.879 39.130 0.00 0.00 38.26 2.77
3409 4187 4.571984 GCATGTTTTTCCTGCTTCAAAGTT 59.428 37.500 0.00 0.00 35.37 2.66
3410 4188 5.277011 GCATGTTTTTCCTGCTTCAAAGTTC 60.277 40.000 0.00 0.00 35.37 3.01
3411 4189 5.398603 TGTTTTTCCTGCTTCAAAGTTCA 57.601 34.783 0.00 0.00 0.00 3.18
3412 4190 5.788450 TGTTTTTCCTGCTTCAAAGTTCAA 58.212 33.333 0.00 0.00 0.00 2.69
3413 4191 6.226787 TGTTTTTCCTGCTTCAAAGTTCAAA 58.773 32.000 0.00 0.00 0.00 2.69
3414 4192 6.147000 TGTTTTTCCTGCTTCAAAGTTCAAAC 59.853 34.615 0.00 0.00 0.00 2.93
3415 4193 4.385358 TTCCTGCTTCAAAGTTCAAACC 57.615 40.909 0.00 0.00 0.00 3.27
3421 4199 3.312697 GCTTCAAAGTTCAAACCGAGTCT 59.687 43.478 0.00 0.00 0.00 3.24
3423 4201 2.612212 TCAAAGTTCAAACCGAGTCTGC 59.388 45.455 0.00 0.00 0.00 4.26
3424 4202 2.614057 CAAAGTTCAAACCGAGTCTGCT 59.386 45.455 0.00 0.00 0.00 4.24
3430 4208 2.996168 AAACCGAGTCTGCTGCGCTT 62.996 55.000 9.73 0.00 0.00 4.68
3437 4215 0.952984 GTCTGCTGCGCTTTCCTTCT 60.953 55.000 9.73 0.00 0.00 2.85
3438 4216 0.608130 TCTGCTGCGCTTTCCTTCTA 59.392 50.000 9.73 0.00 0.00 2.10
3440 4218 1.014044 TGCTGCGCTTTCCTTCTACG 61.014 55.000 9.73 0.00 0.00 3.51
3445 4223 1.429463 CGCTTTCCTTCTACGCAACT 58.571 50.000 0.00 0.00 0.00 3.16
3456 4234 4.325028 TCTACGCAACTTGGTACTTCAA 57.675 40.909 0.00 0.00 0.00 2.69
3475 4253 0.253610 ACCCCTTGTTGTCGTTGTCA 59.746 50.000 0.00 0.00 0.00 3.58
3478 4256 0.042188 CCTTGTTGTCGTTGTCAGCG 60.042 55.000 2.22 2.22 0.00 5.18
3483 4261 0.648441 TTGTCGTTGTCAGCGTCAAC 59.352 50.000 15.32 5.31 40.89 3.18
3484 4262 0.179121 TGTCGTTGTCAGCGTCAACT 60.179 50.000 9.00 0.00 41.76 3.16
3505 4283 1.335182 GAGATCGTCGAGCCTTCATCA 59.665 52.381 6.92 0.00 0.00 3.07
3609 4387 7.255491 ACATCTGCATGACACAAAGTATATG 57.745 36.000 0.00 0.00 33.72 1.78
3644 4426 8.830915 ATTACCACCCAATATGTACATGAAAA 57.169 30.769 18.81 0.00 0.00 2.29
3669 4451 3.428746 TCGCTATTTCAGAGACTGAGC 57.571 47.619 0.00 0.00 41.75 4.26
3680 4462 1.878522 GACTGAGCCGCATGGTACG 60.879 63.158 0.00 0.00 37.67 3.67
3710 4492 9.499479 CACTGGAAGAAGATGCAATATACTTAT 57.501 33.333 0.00 0.00 37.43 1.73
3719 4501 8.571461 AGATGCAATATACTTATTGGGTCATG 57.429 34.615 0.00 0.00 43.27 3.07
3747 4529 3.790820 CCGACAAAATAACATCCAATGCG 59.209 43.478 0.00 0.00 0.00 4.73
3750 4532 2.490328 AAATAACATCCAATGCGGCG 57.510 45.000 0.51 0.51 33.14 6.46
3819 4601 4.740634 GCGTCCTTCATCTGGATATTCACA 60.741 45.833 0.00 0.00 35.87 3.58
3834 4616 2.775911 TCACAATCTCCTTCAGCTGG 57.224 50.000 15.13 0.00 0.00 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
534 599 0.394899 CAAGCCTTCTCCATCCACCC 60.395 60.000 0.00 0.00 0.00 4.61
535 600 0.394899 CCAAGCCTTCTCCATCCACC 60.395 60.000 0.00 0.00 0.00 4.61
536 601 0.620556 TCCAAGCCTTCTCCATCCAC 59.379 55.000 0.00 0.00 0.00 4.02
537 602 1.600058 ATCCAAGCCTTCTCCATCCA 58.400 50.000 0.00 0.00 0.00 3.41
538 603 2.692041 CAAATCCAAGCCTTCTCCATCC 59.308 50.000 0.00 0.00 0.00 3.51
539 604 3.624777 TCAAATCCAAGCCTTCTCCATC 58.375 45.455 0.00 0.00 0.00 3.51
540 605 3.744940 TCAAATCCAAGCCTTCTCCAT 57.255 42.857 0.00 0.00 0.00 3.41
630 698 1.152943 CTCACCCGGATCTCCTCGA 60.153 63.158 0.73 0.00 0.00 4.04
680 752 0.324091 TCCGGACCCTACTTGGACTC 60.324 60.000 0.00 0.00 38.35 3.36
705 777 0.804989 GACATGAAGCCGGTTCCTTG 59.195 55.000 1.90 8.82 33.75 3.61
720 793 1.954362 GAGAGAGCCCAGCACGACAT 61.954 60.000 0.00 0.00 0.00 3.06
734 807 1.554836 CAGGCCAAGTCTGAGAGAGA 58.445 55.000 5.01 0.00 37.47 3.10
735 808 0.108233 GCAGGCCAAGTCTGAGAGAG 60.108 60.000 5.01 0.00 37.47 3.20
766 839 1.002888 CCTGGCTATATGGGCTGTCAG 59.997 57.143 13.80 2.82 0.00 3.51
768 841 0.322008 GCCTGGCTATATGGGCTGTC 60.322 60.000 12.43 0.00 41.20 3.51
779 852 1.381872 GGGTCTGAGAGCCTGGCTA 60.382 63.158 23.44 5.16 45.63 3.93
780 853 2.686835 GGGTCTGAGAGCCTGGCT 60.687 66.667 23.64 23.64 45.63 4.75
781 854 4.154347 CGGGTCTGAGAGCCTGGC 62.154 72.222 26.20 11.65 46.76 4.85
782 855 2.856039 TACCGGGTCTGAGAGCCTGG 62.856 65.000 27.68 27.68 46.76 4.45
783 856 0.970937 TTACCGGGTCTGAGAGCCTG 60.971 60.000 26.20 22.39 46.76 4.85
784 857 0.684805 CTTACCGGGTCTGAGAGCCT 60.685 60.000 26.20 12.76 46.76 4.58
785 858 1.677637 CCTTACCGGGTCTGAGAGCC 61.678 65.000 20.32 20.32 45.64 4.70
788 861 0.683504 GCTCCTTACCGGGTCTGAGA 60.684 60.000 19.06 6.77 0.00 3.27
789 862 1.677637 GGCTCCTTACCGGGTCTGAG 61.678 65.000 6.32 9.43 0.00 3.35
790 863 1.684734 GGCTCCTTACCGGGTCTGA 60.685 63.158 6.32 0.00 0.00 3.27
791 864 2.901042 GGCTCCTTACCGGGTCTG 59.099 66.667 6.32 0.00 0.00 3.51
798 871 4.858680 GGCAGCCGGCTCCTTACC 62.859 72.222 30.29 19.06 44.01 2.85
810 883 4.410743 GAACGGCAAGCAGGCAGC 62.411 66.667 0.00 0.00 44.47 5.25
811 884 1.026182 TATGAACGGCAAGCAGGCAG 61.026 55.000 1.97 0.26 44.47 4.85
812 885 1.002746 TATGAACGGCAAGCAGGCA 60.003 52.632 1.97 0.00 44.47 4.75
813 886 1.723870 CTATGAACGGCAAGCAGGC 59.276 57.895 0.00 0.00 39.93 4.85
814 887 1.718757 GGCTATGAACGGCAAGCAGG 61.719 60.000 12.69 0.00 34.45 4.85
815 888 1.718757 GGGCTATGAACGGCAAGCAG 61.719 60.000 12.69 0.00 34.45 4.24
816 889 1.748879 GGGCTATGAACGGCAAGCA 60.749 57.895 12.69 0.00 34.45 3.91
817 890 1.103398 ATGGGCTATGAACGGCAAGC 61.103 55.000 0.00 0.00 33.03 4.01
818 891 2.254546 TATGGGCTATGAACGGCAAG 57.745 50.000 0.00 0.00 0.00 4.01
819 892 2.949177 ATATGGGCTATGAACGGCAA 57.051 45.000 0.00 0.00 0.00 4.52
820 893 2.354704 GCTATATGGGCTATGAACGGCA 60.355 50.000 0.00 0.00 0.00 5.69
821 894 2.280628 GCTATATGGGCTATGAACGGC 58.719 52.381 0.00 0.00 0.00 5.68
822 895 2.236146 TGGCTATATGGGCTATGAACGG 59.764 50.000 13.80 0.00 0.00 4.44
823 896 3.525537 CTGGCTATATGGGCTATGAACG 58.474 50.000 13.80 0.00 0.00 3.95
824 897 3.878778 CCTGGCTATATGGGCTATGAAC 58.121 50.000 13.80 0.00 0.00 3.18
825 898 2.239654 GCCTGGCTATATGGGCTATGAA 59.760 50.000 12.43 0.00 41.20 2.57
826 899 1.839994 GCCTGGCTATATGGGCTATGA 59.160 52.381 12.43 0.00 41.20 2.15
827 900 2.338577 GCCTGGCTATATGGGCTATG 57.661 55.000 12.43 3.69 41.20 2.23
831 904 0.035630 CTGAGCCTGGCTATATGGGC 60.036 60.000 23.44 7.81 39.88 5.36
832 905 1.356124 ACTGAGCCTGGCTATATGGG 58.644 55.000 23.44 10.34 39.88 4.00
833 906 2.369860 TGAACTGAGCCTGGCTATATGG 59.630 50.000 23.44 12.06 39.88 2.74
834 907 3.661944 CTGAACTGAGCCTGGCTATATG 58.338 50.000 23.44 13.87 39.88 1.78
835 908 2.038295 GCTGAACTGAGCCTGGCTATAT 59.962 50.000 23.44 8.36 39.88 0.86
836 909 1.414181 GCTGAACTGAGCCTGGCTATA 59.586 52.381 23.44 12.96 39.88 1.31
837 910 0.179936 GCTGAACTGAGCCTGGCTAT 59.820 55.000 23.44 7.52 39.88 2.97
838 911 1.599047 GCTGAACTGAGCCTGGCTA 59.401 57.895 23.44 9.30 39.88 3.93
839 912 2.350514 GCTGAACTGAGCCTGGCT 59.649 61.111 23.64 23.64 43.88 4.75
845 918 2.749441 GCCTGGGCTGAACTGAGC 60.749 66.667 4.12 0.00 38.26 4.26
846 919 2.045536 GGCCTGGGCTGAACTGAG 60.046 66.667 13.80 0.00 41.60 3.35
847 920 1.719063 AAAGGCCTGGGCTGAACTGA 61.719 55.000 24.69 0.00 38.81 3.41
848 921 0.829182 AAAAGGCCTGGGCTGAACTG 60.829 55.000 24.69 0.00 38.81 3.16
849 922 0.105504 AAAAAGGCCTGGGCTGAACT 60.106 50.000 24.69 4.76 38.81 3.01
850 923 0.318441 GAAAAAGGCCTGGGCTGAAC 59.682 55.000 24.69 11.72 38.81 3.18
851 924 0.188342 AGAAAAAGGCCTGGGCTGAA 59.812 50.000 24.69 0.00 38.81 3.02
852 925 0.251341 GAGAAAAAGGCCTGGGCTGA 60.251 55.000 24.69 0.00 38.81 4.26
853 926 0.540365 TGAGAAAAAGGCCTGGGCTG 60.540 55.000 24.69 0.00 38.81 4.85
854 927 0.188342 TTGAGAAAAAGGCCTGGGCT 59.812 50.000 18.27 18.27 41.24 5.19
855 928 1.047801 TTTGAGAAAAAGGCCTGGGC 58.952 50.000 5.69 13.15 41.06 5.36
856 929 3.836365 TTTTTGAGAAAAAGGCCTGGG 57.164 42.857 5.69 0.00 35.57 4.45
879 952 0.105504 AGGCCTGGGCTCAACTTTTT 60.106 50.000 18.27 0.00 41.60 1.94
880 953 0.829182 CAGGCCTGGGCTCAACTTTT 60.829 55.000 26.14 0.00 41.60 2.27
881 954 1.228675 CAGGCCTGGGCTCAACTTT 60.229 57.895 26.14 0.00 41.60 2.66
882 955 2.437897 CAGGCCTGGGCTCAACTT 59.562 61.111 26.14 0.00 41.60 2.66
898 971 2.835701 GAATGACGACGCTCTGGCCA 62.836 60.000 4.71 4.71 34.44 5.36
923 996 1.761174 GTGTTCTGGAAGCAGGGGA 59.239 57.895 0.00 0.00 0.00 4.81
924 997 1.303643 GGTGTTCTGGAAGCAGGGG 60.304 63.158 0.00 0.00 0.00 4.79
927 1000 0.179020 TGGTGGTGTTCTGGAAGCAG 60.179 55.000 0.00 0.00 0.00 4.24
929 1002 0.179018 AGTGGTGGTGTTCTGGAAGC 60.179 55.000 0.00 0.00 0.00 3.86
931 1004 0.472471 GGAGTGGTGGTGTTCTGGAA 59.528 55.000 0.00 0.00 0.00 3.53
932 1005 1.415672 GGGAGTGGTGGTGTTCTGGA 61.416 60.000 0.00 0.00 0.00 3.86
933 1006 1.073199 GGGAGTGGTGGTGTTCTGG 59.927 63.158 0.00 0.00 0.00 3.86
934 1007 1.073199 GGGGAGTGGTGGTGTTCTG 59.927 63.158 0.00 0.00 0.00 3.02
935 1008 1.385347 TGGGGAGTGGTGGTGTTCT 60.385 57.895 0.00 0.00 0.00 3.01
936 1009 1.228154 GTGGGGAGTGGTGGTGTTC 60.228 63.158 0.00 0.00 0.00 3.18
937 1010 2.923837 GTGGGGAGTGGTGGTGTT 59.076 61.111 0.00 0.00 0.00 3.32
938 1011 3.556306 CGTGGGGAGTGGTGGTGT 61.556 66.667 0.00 0.00 0.00 4.16
939 1012 4.329545 CCGTGGGGAGTGGTGGTG 62.330 72.222 0.00 0.00 34.06 4.17
940 1013 4.567597 TCCGTGGGGAGTGGTGGT 62.568 66.667 0.00 0.00 37.43 4.16
942 1015 4.373116 CGTCCGTGGGGAGTGGTG 62.373 72.222 0.00 0.00 44.97 4.17
943 1016 4.608774 TCGTCCGTGGGGAGTGGT 62.609 66.667 0.00 0.00 44.97 4.16
946 1019 2.675772 GAGTCGTCCGTGGGGAGT 60.676 66.667 0.00 0.00 44.97 3.85
947 1020 1.935327 GAAGAGTCGTCCGTGGGGAG 61.935 65.000 0.00 0.00 44.97 4.30
948 1021 1.975407 GAAGAGTCGTCCGTGGGGA 60.975 63.158 0.00 0.00 41.08 4.81
950 1023 1.507174 GAGAAGAGTCGTCCGTGGG 59.493 63.158 2.15 0.00 0.00 4.61
952 1025 1.512310 GCGAGAAGAGTCGTCCGTG 60.512 63.158 14.56 3.27 42.17 4.94
953 1026 2.688794 GGCGAGAAGAGTCGTCCGT 61.689 63.158 14.56 0.00 42.17 4.69
954 1027 2.100603 GGCGAGAAGAGTCGTCCG 59.899 66.667 2.15 7.38 42.17 4.79
955 1028 2.100603 CGGCGAGAAGAGTCGTCC 59.899 66.667 0.00 0.00 41.62 4.79
956 1029 2.577378 GCGGCGAGAAGAGTCGTC 60.577 66.667 12.98 0.00 42.17 4.20
957 1030 4.462417 CGCGGCGAGAAGAGTCGT 62.462 66.667 19.16 0.00 42.17 4.34
960 1033 3.858868 TTTGCGCGGCGAGAAGAGT 62.859 57.895 28.54 0.00 0.00 3.24
962 1035 3.411351 GTTTGCGCGGCGAGAAGA 61.411 61.111 28.54 0.00 0.00 2.87
963 1036 4.445545 GGTTTGCGCGGCGAGAAG 62.446 66.667 28.54 0.88 0.00 2.85
972 1045 0.104304 TAGCTAGCTAGGGTTTGCGC 59.896 55.000 20.67 0.00 31.09 6.09
975 1048 5.301555 GGAGATTTAGCTAGCTAGGGTTTG 58.698 45.833 23.03 0.00 0.00 2.93
988 1061 1.230324 GTCGCCATGGGAGATTTAGC 58.770 55.000 15.13 0.00 33.47 3.09
989 1062 1.502231 CGTCGCCATGGGAGATTTAG 58.498 55.000 15.13 0.00 33.47 1.85
991 1064 1.153168 CCGTCGCCATGGGAGATTT 60.153 57.895 15.13 0.00 33.47 2.17
992 1065 2.505982 CCGTCGCCATGGGAGATT 59.494 61.111 15.13 0.00 33.47 2.40
993 1066 4.241555 GCCGTCGCCATGGGAGAT 62.242 66.667 15.13 0.00 33.47 2.75
1140 1414 8.512956 GCGGATCAAATCTACTACTAGTCATTA 58.487 37.037 0.00 0.00 0.00 1.90
1145 1419 6.294787 CCATGCGGATCAAATCTACTACTAGT 60.295 42.308 0.00 0.00 0.00 2.57
1150 1424 4.631131 CACCATGCGGATCAAATCTACTA 58.369 43.478 0.00 0.00 35.59 1.82
1151 1425 3.470709 CACCATGCGGATCAAATCTACT 58.529 45.455 0.00 0.00 35.59 2.57
1152 1426 2.031682 GCACCATGCGGATCAAATCTAC 60.032 50.000 0.00 0.00 31.71 2.59
1153 1427 2.221169 GCACCATGCGGATCAAATCTA 58.779 47.619 0.00 0.00 31.71 1.98
1154 1428 1.027357 GCACCATGCGGATCAAATCT 58.973 50.000 0.00 0.00 31.71 2.40
1155 1429 3.557207 GCACCATGCGGATCAAATC 57.443 52.632 0.00 0.00 31.71 2.17
1187 1461 2.611518 GTCTCACCAAATCGTCTCAGG 58.388 52.381 0.00 0.00 0.00 3.86
1206 1480 2.372690 GCAGAATCGCGTCACACGT 61.373 57.895 5.77 0.00 44.73 4.49
1208 1482 1.417592 CAGCAGAATCGCGTCACAC 59.582 57.895 5.77 0.00 36.85 3.82
1239 1513 1.357761 ACACCTAATCAAACCAGGGGG 59.642 52.381 0.00 0.00 37.16 5.40
1245 1519 9.005777 TCACTAATTGTAACACCTAATCAAACC 57.994 33.333 0.00 0.00 0.00 3.27
1303 1587 2.113139 AATTAGGCGGGCCGGATG 59.887 61.111 29.48 0.00 41.95 3.51
1307 1591 0.535102 AAGATCAATTAGGCGGGCCG 60.535 55.000 24.35 24.35 41.95 6.13
1312 1596 6.535150 TCAGTTTACAGAAGATCAATTAGGCG 59.465 38.462 0.00 0.00 0.00 5.52
1313 1597 7.766278 TCTCAGTTTACAGAAGATCAATTAGGC 59.234 37.037 0.00 0.00 0.00 3.93
1314 1598 9.658799 TTCTCAGTTTACAGAAGATCAATTAGG 57.341 33.333 0.00 0.00 0.00 2.69
1324 1608 5.471456 ACCAGCAATTCTCAGTTTACAGAAG 59.529 40.000 0.00 0.00 32.16 2.85
1325 1609 5.239306 CACCAGCAATTCTCAGTTTACAGAA 59.761 40.000 0.00 0.00 33.18 3.02
1326 1610 4.756642 CACCAGCAATTCTCAGTTTACAGA 59.243 41.667 0.00 0.00 0.00 3.41
1327 1611 4.516698 ACACCAGCAATTCTCAGTTTACAG 59.483 41.667 0.00 0.00 0.00 2.74
1330 1614 5.221843 ACCTACACCAGCAATTCTCAGTTTA 60.222 40.000 0.00 0.00 0.00 2.01
1359 1672 3.759086 TCGCATGCCCTTGTAACAATTTA 59.241 39.130 13.15 0.00 0.00 1.40
1412 1727 2.350007 GCGCAGTTGTCGGTAAAATGAA 60.350 45.455 0.30 0.00 0.00 2.57
1423 1738 4.043200 GGGCAAGGCGCAGTTGTC 62.043 66.667 19.39 17.68 45.17 3.18
1449 1764 3.496884 CGTAAGCACAGTAACACCAATGT 59.503 43.478 0.00 0.00 42.46 2.71
1450 1765 4.065423 CGTAAGCACAGTAACACCAATG 57.935 45.455 0.00 0.00 0.00 2.82
1496 1819 3.472652 AGAGTGGACTACTAGATCGCAG 58.527 50.000 0.00 0.00 40.53 5.18
1561 1960 0.588252 CATGTTAGCCACGCCATAGC 59.412 55.000 0.00 0.00 0.00 2.97
1562 1961 0.588252 GCATGTTAGCCACGCCATAG 59.412 55.000 0.00 0.00 0.00 2.23
1564 1963 0.964860 TTGCATGTTAGCCACGCCAT 60.965 50.000 0.00 0.00 0.00 4.40
1565 1964 0.964860 ATTGCATGTTAGCCACGCCA 60.965 50.000 0.00 0.00 0.00 5.69
1566 1965 0.173255 AATTGCATGTTAGCCACGCC 59.827 50.000 0.00 0.00 0.00 5.68
1578 2079 4.167319 ACCAGTAAAAGGGGAAATTGCAT 58.833 39.130 0.00 0.00 0.00 3.96
1583 2084 6.652205 TGATAGACCAGTAAAAGGGGAAAT 57.348 37.500 0.00 0.00 0.00 2.17
1610 2112 4.265085 GCAAATACAACGGCATACATGTTG 59.735 41.667 2.30 3.61 46.36 3.33
1621 2123 2.392933 AACACACGCAAATACAACGG 57.607 45.000 0.00 0.00 0.00 4.44
1639 2141 2.901192 TGACCTCCATCGTGTTTCCTAA 59.099 45.455 0.00 0.00 0.00 2.69
1641 2143 1.002087 GTGACCTCCATCGTGTTTCCT 59.998 52.381 0.00 0.00 0.00 3.36
1643 2145 2.069273 CTGTGACCTCCATCGTGTTTC 58.931 52.381 0.00 0.00 0.00 2.78
1644 2146 1.270839 CCTGTGACCTCCATCGTGTTT 60.271 52.381 0.00 0.00 0.00 2.83
1645 2147 0.321671 CCTGTGACCTCCATCGTGTT 59.678 55.000 0.00 0.00 0.00 3.32
1647 2149 0.108615 GTCCTGTGACCTCCATCGTG 60.109 60.000 0.00 0.00 35.34 4.35
1649 2151 0.174389 CAGTCCTGTGACCTCCATCG 59.826 60.000 0.00 0.00 42.81 3.84
1650 2152 1.561643 TCAGTCCTGTGACCTCCATC 58.438 55.000 0.00 0.00 42.81 3.51
1654 2158 1.270907 ACCATCAGTCCTGTGACCTC 58.729 55.000 0.00 0.00 42.81 3.85
1655 2159 2.623418 TACCATCAGTCCTGTGACCT 57.377 50.000 0.00 0.00 42.81 3.85
1677 2181 5.964958 ATCAATTACCACACCAACAGAAG 57.035 39.130 0.00 0.00 0.00 2.85
1683 2187 5.600484 ACAAGGAAATCAATTACCACACCAA 59.400 36.000 0.00 0.00 0.00 3.67
1716 2221 2.692557 ACTGATACAGTGCTCCAGCTAG 59.307 50.000 3.54 0.00 43.63 3.42
1750 2255 2.744202 GCACCAACCAGTCAGATAACAG 59.256 50.000 0.00 0.00 0.00 3.16
1778 2283 2.089201 GTTATACACAACCCAGTGGCC 58.911 52.381 2.61 0.00 43.72 5.36
1806 2311 5.638234 GCCTAAACAACTTACTACTCACCAG 59.362 44.000 0.00 0.00 0.00 4.00
1840 2560 4.319177 AGTGAACAACATAAGAGGTGCTC 58.681 43.478 0.00 0.00 0.00 4.26
1851 2571 6.654582 TGCAACTATGTGATAGTGAACAACAT 59.345 34.615 0.00 0.00 44.94 2.71
1914 2635 3.247648 ACACATGTTCGTACAAGCACTTC 59.752 43.478 0.00 0.00 37.91 3.01
1925 2654 3.466836 AGACATTCACACACATGTTCGT 58.533 40.909 0.00 0.00 36.72 3.85
1926 2655 4.024977 TCAAGACATTCACACACATGTTCG 60.025 41.667 0.00 0.00 36.72 3.95
1930 2659 8.975410 ATAATTTCAAGACATTCACACACATG 57.025 30.769 0.00 0.00 0.00 3.21
1966 2695 8.938906 ACATGCCATAATTTCAAGACATTTTTC 58.061 29.630 0.00 0.00 0.00 2.29
1968 2697 7.148373 GCACATGCCATAATTTCAAGACATTTT 60.148 33.333 0.00 0.00 34.31 1.82
2010 2739 1.394917 CGCTACACATCTCAAGGCAAC 59.605 52.381 0.00 0.00 0.00 4.17
2020 2749 1.331756 CAATTCAGGGCGCTACACATC 59.668 52.381 7.64 0.00 0.00 3.06
2031 2760 5.395682 TGCTTTTCATCTTCAATTCAGGG 57.604 39.130 0.00 0.00 0.00 4.45
2072 2801 2.923121 ACAGATGCACTTTGACACAGT 58.077 42.857 0.00 0.00 0.00 3.55
2082 2812 3.719268 TGGTTATCCAACAGATGCACT 57.281 42.857 0.00 0.00 41.25 4.40
2107 2837 5.869753 ACATGCAAGACAGTACAAGATTC 57.130 39.130 0.00 0.00 0.00 2.52
2127 2857 3.194755 ACGGATACATGCAAGACAGTACA 59.805 43.478 0.00 0.00 0.00 2.90
2131 2861 2.352651 CCAACGGATACATGCAAGACAG 59.647 50.000 0.00 0.00 0.00 3.51
2132 2862 2.027653 TCCAACGGATACATGCAAGACA 60.028 45.455 0.00 0.00 0.00 3.41
2134 2864 3.558931 ATCCAACGGATACATGCAAGA 57.441 42.857 0.00 0.00 41.16 3.02
2135 2865 3.187227 GCTATCCAACGGATACATGCAAG 59.813 47.826 0.00 0.00 41.16 4.01
2136 2866 3.138304 GCTATCCAACGGATACATGCAA 58.862 45.455 0.00 0.00 41.16 4.08
2137 2867 2.368548 AGCTATCCAACGGATACATGCA 59.631 45.455 12.58 0.00 41.16 3.96
2138 2868 2.996621 GAGCTATCCAACGGATACATGC 59.003 50.000 0.00 2.32 41.16 4.06
2139 2869 4.257267 TGAGCTATCCAACGGATACATG 57.743 45.455 0.00 0.00 41.16 3.21
2140 2870 5.240891 CAATGAGCTATCCAACGGATACAT 58.759 41.667 0.00 0.00 41.16 2.29
2141 2871 4.631131 CAATGAGCTATCCAACGGATACA 58.369 43.478 0.00 0.00 41.16 2.29
2142 2872 3.433615 GCAATGAGCTATCCAACGGATAC 59.566 47.826 0.00 0.00 43.02 2.24
2145 2875 1.475034 GGCAATGAGCTATCCAACGGA 60.475 52.381 0.00 0.00 44.79 4.69
2146 2876 0.947244 GGCAATGAGCTATCCAACGG 59.053 55.000 0.00 0.00 44.79 4.44
2147 2877 0.947244 GGGCAATGAGCTATCCAACG 59.053 55.000 0.00 0.00 44.79 4.10
2148 2878 2.355010 AGGGCAATGAGCTATCCAAC 57.645 50.000 0.00 0.00 44.79 3.77
2149 2879 3.025978 CAAAGGGCAATGAGCTATCCAA 58.974 45.455 0.00 0.00 44.79 3.53
2150 2880 2.658285 CAAAGGGCAATGAGCTATCCA 58.342 47.619 0.00 0.00 44.79 3.41
2151 2881 1.339291 GCAAAGGGCAATGAGCTATCC 59.661 52.381 0.00 0.00 44.79 2.59
2152 2882 2.789491 GCAAAGGGCAATGAGCTATC 57.211 50.000 0.00 0.00 44.79 2.08
2375 3105 2.776536 CCATCATCTTTGTCCTCCTCCT 59.223 50.000 0.00 0.00 0.00 3.69
2396 3126 1.829222 TCGGTCCCTGATAAACCAGTC 59.171 52.381 0.00 0.00 32.35 3.51
2397 3127 1.946984 TCGGTCCCTGATAAACCAGT 58.053 50.000 0.00 0.00 32.35 4.00
2472 3202 2.603473 ACAGGGCCTAGCGACACA 60.603 61.111 5.28 0.00 0.00 3.72
2508 3238 0.947244 GGATCACATTCATGTCGGGC 59.053 55.000 0.00 0.00 39.39 6.13
2604 3334 3.133542 TCCATCTCAGCTTGTGGATGTAG 59.866 47.826 11.47 0.00 35.91 2.74
2622 3352 2.053244 CTATCTGAACCCTGCCTCCAT 58.947 52.381 0.00 0.00 0.00 3.41
2626 3356 1.488393 GAAGCTATCTGAACCCTGCCT 59.512 52.381 0.00 0.00 0.00 4.75
2628 3358 1.137086 TCGAAGCTATCTGAACCCTGC 59.863 52.381 0.00 0.00 0.00 4.85
2640 3370 1.977056 TTATCTCCGCCTCGAAGCTA 58.023 50.000 4.21 0.00 0.00 3.32
2718 3448 0.531200 CGAAAGGCCGGTTAGTCTCT 59.469 55.000 1.90 0.00 0.00 3.10
2754 3484 2.727298 GTCGACGAAGTAGAAGTTCCCG 60.727 54.545 0.00 0.00 45.07 5.14
2781 3511 1.908299 GGCCTTGTTGGGGAAGTGG 60.908 63.158 0.00 0.00 36.00 4.00
2963 3700 5.459762 TCTCCGTACTGAACTAAAAACAACG 59.540 40.000 0.00 0.00 0.00 4.10
2992 3729 0.176910 TATTCCACGCCAGCGATTCA 59.823 50.000 20.32 0.05 42.83 2.57
3022 3762 6.662414 TGCTACTTATTCAAAATCGTCCAG 57.338 37.500 0.00 0.00 0.00 3.86
3053 3793 3.173953 TGGCAATCACAAAAGAGGGAT 57.826 42.857 0.00 0.00 0.00 3.85
3054 3794 2.673775 TGGCAATCACAAAAGAGGGA 57.326 45.000 0.00 0.00 0.00 4.20
3074 3815 9.071276 CAAATAGATACCACTGCCAATCTAAAT 57.929 33.333 0.00 0.00 35.26 1.40
3083 3824 3.808728 TCTGCAAATAGATACCACTGCC 58.191 45.455 0.00 0.00 0.00 4.85
3104 3845 5.880901 TGTTTTCCCTAGCTTCAAGAGAAT 58.119 37.500 0.00 0.00 32.31 2.40
3119 3860 2.223711 ACAAGTCGCACAATGTTTTCCC 60.224 45.455 0.00 0.00 0.00 3.97
3132 3873 2.544267 GGCACCATAGATAACAAGTCGC 59.456 50.000 0.00 0.00 0.00 5.19
3140 3884 7.728532 TCAAGAGTATGTAGGCACCATAGATAA 59.271 37.037 0.00 0.00 0.00 1.75
3148 3892 3.318275 TCGATCAAGAGTATGTAGGCACC 59.682 47.826 0.00 0.00 0.00 5.01
3163 3907 6.287525 TGTGGTAATCATGCTAATCGATCAA 58.712 36.000 0.00 0.00 0.00 2.57
3182 3926 1.678101 GCAAGCAGAGAAAGTTGTGGT 59.322 47.619 0.00 0.00 0.00 4.16
3197 3941 5.341462 CGCAATATCATACTCAAATGCAAGC 59.659 40.000 0.00 0.00 33.00 4.01
3211 3955 3.008813 AGGGCTCAATCTCGCAATATCAT 59.991 43.478 0.00 0.00 0.00 2.45
3218 3962 0.543277 ATGAAGGGCTCAATCTCGCA 59.457 50.000 0.00 0.00 37.67 5.10
3219 3963 1.202627 AGATGAAGGGCTCAATCTCGC 60.203 52.381 0.00 0.00 37.67 5.03
3279 4046 6.707440 TTTTGGTAGCTTTGTTTCTGATGA 57.293 33.333 0.00 0.00 0.00 2.92
3280 4047 5.403466 GCTTTTGGTAGCTTTGTTTCTGATG 59.597 40.000 0.00 0.00 38.15 3.07
3281 4048 5.532557 GCTTTTGGTAGCTTTGTTTCTGAT 58.467 37.500 0.00 0.00 38.15 2.90
3297 4064 5.940192 TGTGTGTGTAAGATAGCTTTTGG 57.060 39.130 0.00 0.00 35.56 3.28
3299 4066 9.502091 TCTATTTGTGTGTGTAAGATAGCTTTT 57.498 29.630 0.00 0.00 35.56 2.27
3322 4089 8.383318 CAGGATGACTGTTCTTTTTCTTTCTA 57.617 34.615 0.00 0.00 42.42 2.10
3348 4117 0.389687 TCAGACGCACGCATTCATCA 60.390 50.000 0.00 0.00 0.00 3.07
3350 4119 1.372582 ATTCAGACGCACGCATTCAT 58.627 45.000 0.00 0.00 0.00 2.57
3351 4120 1.155889 AATTCAGACGCACGCATTCA 58.844 45.000 0.00 0.00 0.00 2.57
3353 4122 2.346803 ACTAATTCAGACGCACGCATT 58.653 42.857 0.00 0.00 0.00 3.56
3368 4137 5.688807 ACATGCAGCTATCCTGAAACTAAT 58.311 37.500 0.00 0.00 44.64 1.73
3374 4152 4.158394 GGAAAAACATGCAGCTATCCTGAA 59.842 41.667 0.00 0.00 44.64 3.02
3377 4155 3.698040 CAGGAAAAACATGCAGCTATCCT 59.302 43.478 0.00 0.00 36.52 3.24
3389 4167 5.398603 TGAACTTTGAAGCAGGAAAAACA 57.601 34.783 0.00 0.00 0.00 2.83
3394 4172 3.181491 CGGTTTGAACTTTGAAGCAGGAA 60.181 43.478 0.00 0.00 0.00 3.36
3395 4173 2.357637 CGGTTTGAACTTTGAAGCAGGA 59.642 45.455 0.00 0.00 0.00 3.86
3396 4174 2.357637 TCGGTTTGAACTTTGAAGCAGG 59.642 45.455 0.00 0.00 0.00 4.85
3407 4185 0.235926 GCAGCAGACTCGGTTTGAAC 59.764 55.000 0.00 0.00 0.00 3.18
3409 4187 1.664649 CGCAGCAGACTCGGTTTGA 60.665 57.895 0.00 0.00 0.00 2.69
3410 4188 2.856032 CGCAGCAGACTCGGTTTG 59.144 61.111 0.00 0.00 0.00 2.93
3423 4201 1.710339 GCGTAGAAGGAAAGCGCAG 59.290 57.895 11.47 0.00 46.23 5.18
3424 4202 3.870606 GCGTAGAAGGAAAGCGCA 58.129 55.556 11.47 0.00 46.23 6.09
3430 4208 2.922740 ACCAAGTTGCGTAGAAGGAA 57.077 45.000 0.00 0.00 0.00 3.36
3437 4215 3.132925 GGTTGAAGTACCAAGTTGCGTA 58.867 45.455 0.00 0.00 38.12 4.42
3438 4216 1.944709 GGTTGAAGTACCAAGTTGCGT 59.055 47.619 0.00 0.00 38.12 5.24
3440 4218 1.611977 GGGGTTGAAGTACCAAGTTGC 59.388 52.381 0.00 0.00 40.09 4.17
3441 4219 3.223674 AGGGGTTGAAGTACCAAGTTG 57.776 47.619 0.00 0.00 40.09 3.16
3442 4220 3.053170 ACAAGGGGTTGAAGTACCAAGTT 60.053 43.478 0.00 0.00 40.09 2.66
3445 4223 3.673543 AACAAGGGGTTGAAGTACCAA 57.326 42.857 0.00 0.00 40.09 3.67
3456 4234 0.253610 TGACAACGACAACAAGGGGT 59.746 50.000 0.00 0.00 0.00 4.95
3475 4253 0.179187 CGACGATCTCAGTTGACGCT 60.179 55.000 0.00 0.00 0.00 5.07
3478 4256 1.540407 GCTCGACGATCTCAGTTGAC 58.460 55.000 0.00 0.00 0.00 3.18
3483 4261 0.735471 TGAAGGCTCGACGATCTCAG 59.265 55.000 0.00 0.00 0.00 3.35
3484 4262 1.335182 GATGAAGGCTCGACGATCTCA 59.665 52.381 0.00 0.00 0.00 3.27
3505 4283 2.900106 GCTGGTCAGTGGGGAAGCT 61.900 63.158 0.00 0.00 0.00 3.74
3535 4313 4.863131 GTCGAGAAGAATGTAATCACGGTT 59.137 41.667 0.00 0.00 0.00 4.44
3644 4426 5.784177 TCAGTCTCTGAAATAGCGAACTTT 58.216 37.500 0.00 0.00 37.57 2.66
3646 4428 4.676723 GCTCAGTCTCTGAAATAGCGAACT 60.677 45.833 1.22 0.00 40.18 3.01
3652 4434 2.159184 TGCGGCTCAGTCTCTGAAATAG 60.159 50.000 0.00 0.00 40.18 1.73
3660 4442 0.528684 GTACCATGCGGCTCAGTCTC 60.529 60.000 0.00 0.00 34.57 3.36
3664 4446 0.530650 AATCGTACCATGCGGCTCAG 60.531 55.000 0.00 0.00 34.57 3.35
3669 4451 0.930310 CAGTGAATCGTACCATGCGG 59.070 55.000 0.00 0.00 38.77 5.69
3680 4462 5.831702 ATTGCATCTTCTTCCAGTGAATC 57.168 39.130 0.00 0.00 0.00 2.52
3710 4492 1.349357 TGTCGGAATCACATGACCCAA 59.651 47.619 0.00 0.00 0.00 4.12
3719 4501 6.189677 TGGATGTTATTTTGTCGGAATCAC 57.810 37.500 0.00 0.00 0.00 3.06
3747 4529 3.446516 TCTCTCTAGTTTTAAGGGACGCC 59.553 47.826 0.00 0.00 0.00 5.68
3750 4532 5.361427 GGCATCTCTCTAGTTTTAAGGGAC 58.639 45.833 0.00 0.00 0.00 4.46
3819 4601 1.004044 CACCACCAGCTGAAGGAGATT 59.996 52.381 25.27 5.64 0.00 2.40
3834 4616 4.090057 GAGCCGCTTTCGCACCAC 62.090 66.667 0.00 0.00 35.30 4.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.