Multiple sequence alignment - TraesCS4A01G323400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G323400 chr4A 100.000 4074 0 0 1 4074 611267257 611263184 0.000000e+00 7524.0
1 TraesCS4A01G323400 chr4A 89.709 447 28 7 1313 1749 557106133 557106571 4.600000e-154 555.0
2 TraesCS4A01G323400 chr4A 82.286 175 22 6 3655 3822 611267658 611267830 4.240000e-30 143.0
3 TraesCS4A01G323400 chr5D 94.045 2502 102 15 644 3108 558341972 558339481 0.000000e+00 3751.0
4 TraesCS4A01G323400 chr5D 96.364 220 7 1 3303 3522 469247175 469246957 1.080000e-95 361.0
5 TraesCS4A01G323400 chr5D 79.602 402 31 12 97 474 558342744 558342370 1.460000e-59 241.0
6 TraesCS4A01G323400 chr5D 95.652 138 3 1 505 642 558342294 558342160 6.860000e-53 219.0
7 TraesCS4A01G323400 chr5D 89.474 76 8 0 3688 3763 558338518 558338443 3.350000e-16 97.1
8 TraesCS4A01G323400 chr5B 95.489 1862 67 8 1254 3108 704311058 704312909 0.000000e+00 2957.0
9 TraesCS4A01G323400 chr5B 94.640 597 24 3 644 1233 704310477 704311072 0.000000e+00 918.0
10 TraesCS4A01G323400 chr5B 86.452 310 18 10 182 475 704309766 704310067 6.570000e-83 318.0
11 TraesCS4A01G323400 chr5B 93.548 155 6 3 489 642 704310138 704310289 1.140000e-55 228.0
12 TraesCS4A01G323400 chr5B 90.062 161 13 2 3915 4072 704313913 704314073 5.340000e-49 206.0
13 TraesCS4A01G323400 chr5B 82.126 207 25 5 3621 3822 704313615 704313814 2.520000e-37 167.0
14 TraesCS4A01G323400 chr5B 84.286 140 17 2 3688 3822 704305717 704305578 9.190000e-27 132.0
15 TraesCS4A01G323400 chr5B 83.333 150 15 6 3634 3777 704309433 704309288 3.300000e-26 130.0
16 TraesCS4A01G323400 chr3B 83.974 1223 153 27 1891 3077 22518109 22519324 0.000000e+00 1133.0
17 TraesCS4A01G323400 chr3B 83.479 914 127 15 2181 3089 22459120 22458226 0.000000e+00 830.0
18 TraesCS4A01G323400 chr3B 83.333 912 130 14 2182 3089 22321221 22320328 0.000000e+00 822.0
19 TraesCS4A01G323400 chr3B 80.837 908 125 32 1268 2143 22322211 22321321 0.000000e+00 667.0
20 TraesCS4A01G323400 chr3B 95.154 227 8 2 3300 3526 511851611 511851388 5.010000e-94 355.0
21 TraesCS4A01G323400 chr3B 94.017 234 12 2 3299 3531 556678895 556679127 1.800000e-93 353.0
22 TraesCS4A01G323400 chr3B 80.523 421 42 25 1286 1699 22517572 22517959 1.850000e-73 287.0
23 TraesCS4A01G323400 chr3D 83.580 1218 157 26 1894 3077 15366570 15365362 0.000000e+00 1101.0
24 TraesCS4A01G323400 chr3D 84.326 957 133 13 2155 3105 15387851 15386906 0.000000e+00 920.0
25 TraesCS4A01G323400 chr3D 84.262 610 83 11 2181 2786 15342000 15341400 2.110000e-162 582.0
26 TraesCS4A01G323400 chr3D 80.816 490 63 19 1222 1702 15367185 15366718 5.010000e-94 355.0
27 TraesCS4A01G323400 chr3D 91.200 250 18 3 1894 2143 15388172 15387927 1.810000e-88 337.0
28 TraesCS4A01G323400 chr3D 89.960 249 24 1 1878 2126 15342360 15342113 1.830000e-83 320.0
29 TraesCS4A01G323400 chr3D 77.566 419 42 25 1288 1699 15388691 15388318 5.340000e-49 206.0
30 TraesCS4A01G323400 chr3D 86.250 80 10 1 3003 3082 15341389 15341311 7.260000e-13 86.1
31 TraesCS4A01G323400 chr3A 79.003 1524 225 60 644 2126 20937134 20938603 0.000000e+00 953.0
32 TraesCS4A01G323400 chr3A 83.996 931 130 15 2155 3077 20843577 20844496 0.000000e+00 876.0
33 TraesCS4A01G323400 chr3A 83.370 914 128 19 2181 3089 20938716 20939610 0.000000e+00 824.0
34 TraesCS4A01G323400 chr3A 90.562 445 26 5 1313 1749 193872691 193872255 3.530000e-160 575.0
35 TraesCS4A01G323400 chr3A 96.444 225 7 1 3298 3522 535225518 535225741 1.790000e-98 370.0
36 TraesCS4A01G323400 chr3A 81.517 422 54 15 1285 1700 20915007 20915410 3.930000e-85 326.0
37 TraesCS4A01G323400 chr3A 89.328 253 22 4 1891 2143 20843254 20843501 3.060000e-81 313.0
38 TraesCS4A01G323400 chr5A 90.423 449 26 7 1310 1749 510197189 510197629 3.530000e-160 575.0
39 TraesCS4A01G323400 chr2A 96.429 224 7 1 3301 3524 177665586 177665808 6.430000e-98 368.0
40 TraesCS4A01G323400 chr2A 94.262 244 9 5 3301 3541 258346967 258346726 6.430000e-98 368.0
41 TraesCS4A01G323400 chr1D 95.595 227 9 1 3300 3526 315408577 315408352 2.990000e-96 363.0
42 TraesCS4A01G323400 chr1D 97.222 36 1 0 3124 3159 29580318 29580353 1.220000e-05 62.1
43 TraesCS4A01G323400 chr2B 93.644 236 13 2 3290 3525 418970311 418970544 6.480000e-93 351.0
44 TraesCS4A01G323400 chr7D 93.966 232 12 2 3298 3529 47840246 47840475 2.330000e-92 350.0
45 TraesCS4A01G323400 chr7D 97.143 35 1 0 62 96 24941490 24941524 4.400000e-05 60.2
46 TraesCS4A01G323400 chr7A 97.143 35 1 0 62 96 25689008 25689042 4.400000e-05 60.2
47 TraesCS4A01G323400 chr6B 90.000 40 4 0 59 98 569048365 569048404 7.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G323400 chr4A 611263184 611267257 4073 True 7524.000000 7524 100.000000 1 4074 1 chr4A.!!$R1 4073
1 TraesCS4A01G323400 chr5D 558338443 558342744 4301 True 1077.025000 3751 89.693250 97 3763 4 chr5D.!!$R2 3666
2 TraesCS4A01G323400 chr5B 704309766 704314073 4307 False 799.000000 2957 90.386167 182 4072 6 chr5B.!!$F1 3890
3 TraesCS4A01G323400 chr3B 22458226 22459120 894 True 830.000000 830 83.479000 2181 3089 1 chr3B.!!$R1 908
4 TraesCS4A01G323400 chr3B 22320328 22322211 1883 True 744.500000 822 82.085000 1268 3089 2 chr3B.!!$R3 1821
5 TraesCS4A01G323400 chr3B 22517572 22519324 1752 False 710.000000 1133 82.248500 1286 3077 2 chr3B.!!$F2 1791
6 TraesCS4A01G323400 chr3D 15365362 15367185 1823 True 728.000000 1101 82.198000 1222 3077 2 chr3D.!!$R2 1855
7 TraesCS4A01G323400 chr3D 15386906 15388691 1785 True 487.666667 920 84.364000 1288 3105 3 chr3D.!!$R3 1817
8 TraesCS4A01G323400 chr3D 15341311 15342360 1049 True 329.366667 582 86.824000 1878 3082 3 chr3D.!!$R1 1204
9 TraesCS4A01G323400 chr3A 20937134 20939610 2476 False 888.500000 953 81.186500 644 3089 2 chr3A.!!$F4 2445
10 TraesCS4A01G323400 chr3A 20843254 20844496 1242 False 594.500000 876 86.662000 1891 3077 2 chr3A.!!$F3 1186

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
234 252 0.039256 CCACAGAATGCCAAACACGG 60.039 55.000 0.00 0.00 42.53 4.94 F
511 627 0.179121 CGTACGGTTAGCAGCATGGA 60.179 55.000 7.57 0.00 35.86 3.41 F
624 740 1.159664 ACCTTCCAGTCCAGCCTCT 59.840 57.895 0.00 0.00 0.00 3.69 F
1346 1697 1.191535 ATCGGTAGCTGCACCTGTAA 58.808 50.000 15.75 3.69 36.35 2.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1174 1484 1.298116 CATGCATGCGCGGAGAAAG 60.298 57.895 14.93 0.0 42.97 2.62 R
1714 2100 1.737838 TGCCTAGAAAACATGGAGCG 58.262 50.000 0.00 0.0 0.00 5.03 R
1715 2101 2.424956 CCTTGCCTAGAAAACATGGAGC 59.575 50.000 0.00 0.0 31.93 4.70 R
3129 3624 0.391263 GCTACACCCCAGCACACTAC 60.391 60.000 0.00 0.0 38.93 2.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 5.125100 ACTAAATTTGTAGTGACGTCGGA 57.875 39.130 11.62 0.00 32.97 4.55
40 41 5.717119 ACTAAATTTGTAGTGACGTCGGAT 58.283 37.500 11.62 1.47 32.97 4.18
41 42 6.161381 ACTAAATTTGTAGTGACGTCGGATT 58.839 36.000 11.62 0.00 32.97 3.01
42 43 5.934935 AAATTTGTAGTGACGTCGGATTT 57.065 34.783 11.62 6.44 0.00 2.17
43 44 7.814107 ACTAAATTTGTAGTGACGTCGGATTTA 59.186 33.333 11.62 11.19 32.97 1.40
44 45 7.605410 AAATTTGTAGTGACGTCGGATTTAT 57.395 32.000 11.62 0.00 0.00 1.40
45 46 8.706492 AAATTTGTAGTGACGTCGGATTTATA 57.294 30.769 11.62 0.00 0.00 0.98
46 47 8.882415 AATTTGTAGTGACGTCGGATTTATAT 57.118 30.769 11.62 0.00 0.00 0.86
47 48 7.688478 TTTGTAGTGACGTCGGATTTATATG 57.312 36.000 11.62 0.00 0.00 1.78
48 49 5.217393 TGTAGTGACGTCGGATTTATATGC 58.783 41.667 11.62 0.00 0.00 3.14
49 50 3.650139 AGTGACGTCGGATTTATATGCC 58.350 45.455 11.62 0.00 0.00 4.40
50 51 3.321111 AGTGACGTCGGATTTATATGCCT 59.679 43.478 11.62 0.00 0.00 4.75
51 52 4.521639 AGTGACGTCGGATTTATATGCCTA 59.478 41.667 11.62 0.00 0.00 3.93
52 53 4.857588 GTGACGTCGGATTTATATGCCTAG 59.142 45.833 11.62 0.00 0.00 3.02
53 54 3.846360 ACGTCGGATTTATATGCCTAGC 58.154 45.455 0.00 0.00 0.00 3.42
54 55 3.510360 ACGTCGGATTTATATGCCTAGCT 59.490 43.478 0.00 0.00 0.00 3.32
55 56 4.703575 ACGTCGGATTTATATGCCTAGCTA 59.296 41.667 0.00 0.00 0.00 3.32
56 57 5.360144 ACGTCGGATTTATATGCCTAGCTAT 59.640 40.000 0.00 0.00 0.00 2.97
57 58 5.915758 CGTCGGATTTATATGCCTAGCTATC 59.084 44.000 0.00 0.00 0.00 2.08
58 59 6.217294 GTCGGATTTATATGCCTAGCTATCC 58.783 44.000 0.00 0.00 0.00 2.59
59 60 5.897250 TCGGATTTATATGCCTAGCTATCCA 59.103 40.000 0.00 0.00 31.85 3.41
60 61 6.554982 TCGGATTTATATGCCTAGCTATCCAT 59.445 38.462 10.14 10.14 31.85 3.41
61 62 7.728532 TCGGATTTATATGCCTAGCTATCCATA 59.271 37.037 12.96 12.96 31.85 2.74
62 63 8.535335 CGGATTTATATGCCTAGCTATCCATAT 58.465 37.037 20.82 20.82 35.64 1.78
65 66 8.908786 TTTATATGCCTAGCTATCCATATTGC 57.091 34.615 21.62 6.64 34.01 3.56
66 67 3.634397 TGCCTAGCTATCCATATTGCC 57.366 47.619 0.00 0.00 34.80 4.52
67 68 2.093500 TGCCTAGCTATCCATATTGCCG 60.093 50.000 0.00 0.00 34.80 5.69
68 69 2.093447 GCCTAGCTATCCATATTGCCGT 60.093 50.000 0.00 0.00 34.80 5.68
69 70 3.132289 GCCTAGCTATCCATATTGCCGTA 59.868 47.826 0.00 0.00 34.80 4.02
70 71 4.382685 GCCTAGCTATCCATATTGCCGTAA 60.383 45.833 0.00 0.00 34.80 3.18
71 72 5.730550 CCTAGCTATCCATATTGCCGTAAA 58.269 41.667 0.00 0.00 34.80 2.01
72 73 6.170506 CCTAGCTATCCATATTGCCGTAAAA 58.829 40.000 0.00 0.00 34.80 1.52
73 74 6.653320 CCTAGCTATCCATATTGCCGTAAAAA 59.347 38.462 0.00 0.00 34.80 1.94
93 94 4.686191 AAAGTTTGATTTGCCATGGTCA 57.314 36.364 14.67 9.23 0.00 4.02
94 95 4.686191 AAGTTTGATTTGCCATGGTCAA 57.314 36.364 14.67 14.88 0.00 3.18
95 96 4.686191 AGTTTGATTTGCCATGGTCAAA 57.314 36.364 26.06 26.06 38.01 2.69
113 114 7.707104 TGGTCAAAAATCAACTTCTCTTCTTC 58.293 34.615 0.00 0.00 0.00 2.87
114 115 7.557719 TGGTCAAAAATCAACTTCTCTTCTTCT 59.442 33.333 0.00 0.00 0.00 2.85
121 122 4.818546 TCAACTTCTCTTCTTCTGCAAAGG 59.181 41.667 8.23 0.00 0.00 3.11
122 123 3.749226 ACTTCTCTTCTTCTGCAAAGGG 58.251 45.455 8.23 0.00 0.00 3.95
124 125 1.172175 CTCTTCTTCTGCAAAGGGGC 58.828 55.000 8.23 0.00 0.00 5.80
125 126 0.251341 TCTTCTTCTGCAAAGGGGCC 60.251 55.000 0.00 0.00 0.00 5.80
131 137 0.105760 TCTGCAAAGGGGCCTTTTGA 60.106 50.000 36.58 22.83 42.93 2.69
140 146 1.221466 GGGCCTTTTGAAAGCAACGC 61.221 55.000 0.84 0.00 34.69 4.84
152 158 3.730761 CAACGCCCAGCAGACTGC 61.731 66.667 20.12 20.12 45.46 4.40
167 173 4.214119 GCAGACTGCATACACTTTCTTCAA 59.786 41.667 22.62 0.00 44.26 2.69
168 174 5.277974 GCAGACTGCATACACTTTCTTCAAA 60.278 40.000 22.62 0.00 44.26 2.69
174 180 9.066892 ACTGCATACACTTTCTTCAAATTCTTA 57.933 29.630 0.00 0.00 0.00 2.10
217 235 5.104982 ACCTGAAAGCAACATTTCTTTTCCA 60.105 36.000 1.41 0.00 39.45 3.53
218 236 5.234972 CCTGAAAGCAACATTTCTTTTCCAC 59.765 40.000 1.41 0.00 39.45 4.02
219 237 5.728471 TGAAAGCAACATTTCTTTTCCACA 58.272 33.333 1.41 0.00 39.45 4.17
220 238 5.811613 TGAAAGCAACATTTCTTTTCCACAG 59.188 36.000 1.41 0.00 39.45 3.66
222 240 5.596836 AGCAACATTTCTTTTCCACAGAA 57.403 34.783 0.00 0.00 0.00 3.02
223 241 6.165700 AGCAACATTTCTTTTCCACAGAAT 57.834 33.333 0.00 0.00 30.26 2.40
225 243 5.333568 GCAACATTTCTTTTCCACAGAATGC 60.334 40.000 0.00 0.00 42.53 3.56
226 244 4.886579 ACATTTCTTTTCCACAGAATGCC 58.113 39.130 0.00 0.00 42.53 4.40
227 245 4.344679 ACATTTCTTTTCCACAGAATGCCA 59.655 37.500 0.00 0.00 42.53 4.92
230 248 4.320608 TCTTTTCCACAGAATGCCAAAC 57.679 40.909 0.00 0.00 42.53 2.93
233 251 0.950836 TCCACAGAATGCCAAACACG 59.049 50.000 0.00 0.00 42.53 4.49
234 252 0.039256 CCACAGAATGCCAAACACGG 60.039 55.000 0.00 0.00 42.53 4.94
235 253 0.667993 CACAGAATGCCAAACACGGT 59.332 50.000 0.00 0.00 42.53 4.83
251 272 7.148606 CCAAACACGGTCGTTATTAGTTATTGA 60.149 37.037 0.00 0.00 0.00 2.57
266 312 9.996554 ATTAGTTATTGACAATCATATCGGACA 57.003 29.630 3.36 0.00 0.00 4.02
267 313 9.825109 TTAGTTATTGACAATCATATCGGACAA 57.175 29.630 3.36 0.00 0.00 3.18
268 314 8.370493 AGTTATTGACAATCATATCGGACAAG 57.630 34.615 3.36 0.00 0.00 3.16
269 315 7.442364 AGTTATTGACAATCATATCGGACAAGG 59.558 37.037 3.36 0.00 0.00 3.61
270 316 5.351948 TTGACAATCATATCGGACAAGGA 57.648 39.130 0.00 0.00 0.00 3.36
271 317 4.693283 TGACAATCATATCGGACAAGGAC 58.307 43.478 0.00 0.00 0.00 3.85
272 318 4.058817 GACAATCATATCGGACAAGGACC 58.941 47.826 0.00 0.00 0.00 4.46
278 324 2.745037 CGGACAAGGACCGGGAAA 59.255 61.111 6.32 0.00 45.65 3.13
279 325 1.298667 CGGACAAGGACCGGGAAAT 59.701 57.895 6.32 0.00 45.65 2.17
280 326 0.538118 CGGACAAGGACCGGGAAATA 59.462 55.000 6.32 0.00 45.65 1.40
293 339 8.003044 AGGACCGGGAAATATATAGATAATCGA 58.997 37.037 6.32 0.00 0.00 3.59
426 484 5.408604 CCGGCAGATAAATAATCACCTACAC 59.591 44.000 0.00 0.00 37.03 2.90
427 485 6.223852 CGGCAGATAAATAATCACCTACACT 58.776 40.000 0.00 0.00 37.03 3.55
428 486 6.706270 CGGCAGATAAATAATCACCTACACTT 59.294 38.462 0.00 0.00 37.03 3.16
429 487 7.307396 CGGCAGATAAATAATCACCTACACTTG 60.307 40.741 0.00 0.00 37.03 3.16
430 488 7.355778 GCAGATAAATAATCACCTACACTTGC 58.644 38.462 0.00 0.00 37.03 4.01
431 489 7.227512 GCAGATAAATAATCACCTACACTTGCT 59.772 37.037 0.00 0.00 37.03 3.91
432 490 8.554528 CAGATAAATAATCACCTACACTTGCTG 58.445 37.037 0.00 0.00 37.03 4.41
433 491 8.267894 AGATAAATAATCACCTACACTTGCTGT 58.732 33.333 0.00 0.00 37.03 4.40
437 495 3.386768 TCACCTACACTTGCTGTCTTC 57.613 47.619 0.00 0.00 33.91 2.87
475 533 5.348164 AGTGAAATAAGCAACCACAAACAC 58.652 37.500 0.00 0.00 0.00 3.32
477 535 5.578727 GTGAAATAAGCAACCACAAACACAA 59.421 36.000 0.00 0.00 0.00 3.33
481 539 3.508744 AGCAACCACAAACACAAAGAG 57.491 42.857 0.00 0.00 0.00 2.85
482 540 2.166254 AGCAACCACAAACACAAAGAGG 59.834 45.455 0.00 0.00 0.00 3.69
483 541 2.539476 CAACCACAAACACAAAGAGGC 58.461 47.619 0.00 0.00 0.00 4.70
485 543 1.476488 ACCACAAACACAAAGAGGCAC 59.524 47.619 0.00 0.00 0.00 5.01
486 544 1.476085 CCACAAACACAAAGAGGCACA 59.524 47.619 0.00 0.00 0.00 4.57
488 546 1.132262 ACAAACACAAAGAGGCACACG 59.868 47.619 0.00 0.00 0.00 4.49
489 547 1.132262 CAAACACAAAGAGGCACACGT 59.868 47.619 0.00 0.00 0.00 4.49
490 548 2.319136 AACACAAAGAGGCACACGTA 57.681 45.000 0.00 0.00 0.00 3.57
511 627 0.179121 CGTACGGTTAGCAGCATGGA 60.179 55.000 7.57 0.00 35.86 3.41
624 740 1.159664 ACCTTCCAGTCCAGCCTCT 59.840 57.895 0.00 0.00 0.00 3.69
665 967 2.126031 GACGAGGTGAACGCCCTC 60.126 66.667 0.48 0.00 44.24 4.30
668 970 2.747686 GAGGTGAACGCCCTCCAA 59.252 61.111 0.48 0.00 42.29 3.53
1146 1453 2.568623 CCCCCACAGGCAAGATATAC 57.431 55.000 0.00 0.00 0.00 1.47
1174 1484 5.120830 CCGACGATCCATAAGATTCCATTTC 59.879 44.000 0.00 0.00 34.42 2.17
1178 1488 8.159344 ACGATCCATAAGATTCCATTTCTTTC 57.841 34.615 0.00 0.00 34.42 2.62
1238 1572 6.759827 GCCGTACTCTTGATTAATTAGTTGGA 59.240 38.462 0.00 0.00 0.00 3.53
1339 1690 1.699730 TAGCCTTATCGGTAGCTGCA 58.300 50.000 3.61 0.00 36.79 4.41
1346 1697 1.191535 ATCGGTAGCTGCACCTGTAA 58.808 50.000 15.75 3.69 36.35 2.41
1533 1908 6.967135 GGTAAAGTGACCTTACAGGAAAAAG 58.033 40.000 6.44 0.00 37.67 2.27
1714 2100 8.184192 GGTAATATATAACACCATGCATTCTGC 58.816 37.037 0.00 0.00 45.29 4.26
1770 2181 4.757657 TGCACACCAATACAAAACGACTAT 59.242 37.500 0.00 0.00 0.00 2.12
1771 2182 5.932883 TGCACACCAATACAAAACGACTATA 59.067 36.000 0.00 0.00 0.00 1.31
1870 2281 8.811017 TGCATCATAAAAGAAACCCAGATTAAA 58.189 29.630 0.00 0.00 0.00 1.52
2516 2999 9.772973 TCAACCATATAGTAATTGGACATACAC 57.227 33.333 8.35 0.00 34.52 2.90
2518 3001 9.998106 AACCATATAGTAATTGGACATACACTC 57.002 33.333 8.35 0.00 34.52 3.51
2662 3145 3.087031 CCATGAGTGTGGAGCTTTCATT 58.913 45.455 0.00 0.00 42.02 2.57
2697 3180 7.772757 TGGATATGTGAGTGCATATTTACACAA 59.227 33.333 0.00 0.00 40.83 3.33
2779 3270 6.024552 TGAAATTTAAAGTAGGCTTGGCAG 57.975 37.500 0.00 0.00 34.71 4.85
2905 3396 2.489329 ACAAGAAGGTGCAATTGATCGG 59.511 45.455 10.34 0.54 0.00 4.18
2917 3408 0.537653 TTGATCGGCCGACCATGTTA 59.462 50.000 33.75 9.25 34.57 2.41
3125 3620 7.152645 ACTTTGATATTATACAGTGTAGCGGG 58.847 38.462 9.25 0.00 0.00 6.13
3126 3621 5.654603 TGATATTATACAGTGTAGCGGGG 57.345 43.478 9.25 0.00 0.00 5.73
3127 3622 4.464951 TGATATTATACAGTGTAGCGGGGG 59.535 45.833 9.25 0.00 0.00 5.40
3129 3624 1.405872 TATACAGTGTAGCGGGGGTG 58.594 55.000 9.25 0.00 0.00 4.61
3131 3626 0.039472 TACAGTGTAGCGGGGGTGTA 59.961 55.000 0.00 0.00 0.00 2.90
3132 3627 1.255667 ACAGTGTAGCGGGGGTGTAG 61.256 60.000 0.00 0.00 0.00 2.74
3133 3628 1.077985 AGTGTAGCGGGGGTGTAGT 59.922 57.895 0.00 0.00 0.00 2.73
3134 3629 1.217244 GTGTAGCGGGGGTGTAGTG 59.783 63.158 0.00 0.00 0.00 2.74
3136 3631 1.217244 GTAGCGGGGGTGTAGTGTG 59.783 63.158 0.00 0.00 0.00 3.82
3137 3632 2.652095 TAGCGGGGGTGTAGTGTGC 61.652 63.158 0.00 0.00 0.00 4.57
3138 3633 4.016706 GCGGGGGTGTAGTGTGCT 62.017 66.667 0.00 0.00 0.00 4.40
3139 3634 2.047274 CGGGGGTGTAGTGTGCTG 60.047 66.667 0.00 0.00 0.00 4.41
3141 3636 2.351276 GGGGTGTAGTGTGCTGGG 59.649 66.667 0.00 0.00 0.00 4.45
3142 3637 2.351276 GGGTGTAGTGTGCTGGGG 59.649 66.667 0.00 0.00 0.00 4.96
3143 3638 2.526046 GGGTGTAGTGTGCTGGGGT 61.526 63.158 0.00 0.00 0.00 4.95
3144 3639 1.302511 GGTGTAGTGTGCTGGGGTG 60.303 63.158 0.00 0.00 0.00 4.61
3146 3641 0.682852 GTGTAGTGTGCTGGGGTGTA 59.317 55.000 0.00 0.00 0.00 2.90
3149 3644 1.550130 TAGTGTGCTGGGGTGTAGCC 61.550 60.000 0.00 0.00 40.42 3.93
3150 3645 2.851588 TGTGCTGGGGTGTAGCCA 60.852 61.111 2.20 0.00 40.42 4.75
3151 3646 2.359975 GTGCTGGGGTGTAGCCAC 60.360 66.667 2.20 0.00 42.43 5.01
3152 3647 2.529136 TGCTGGGGTGTAGCCACT 60.529 61.111 2.20 0.00 42.62 4.00
3153 3648 1.229368 TGCTGGGGTGTAGCCACTA 60.229 57.895 2.20 0.00 42.62 2.74
3154 3649 0.620410 TGCTGGGGTGTAGCCACTAT 60.620 55.000 2.20 0.00 42.62 2.12
3155 3650 0.546598 GCTGGGGTGTAGCCACTATT 59.453 55.000 2.20 0.00 42.62 1.73
3156 3651 1.064685 GCTGGGGTGTAGCCACTATTT 60.065 52.381 2.20 0.00 42.62 1.40
3159 3654 2.025699 TGGGGTGTAGCCACTATTTTCC 60.026 50.000 2.20 0.00 42.62 3.13
3161 3656 2.241430 GGGTGTAGCCACTATTTTCCCT 59.759 50.000 0.00 0.00 41.53 4.20
3163 3658 4.080186 GGGTGTAGCCACTATTTTCCCTAA 60.080 45.833 0.00 0.00 41.53 2.69
3165 3660 4.575236 GTGTAGCCACTATTTTCCCTAAGC 59.425 45.833 0.00 0.00 38.61 3.09
3167 3662 4.157849 AGCCACTATTTTCCCTAAGCTC 57.842 45.455 0.00 0.00 0.00 4.09
3168 3663 3.783082 AGCCACTATTTTCCCTAAGCTCT 59.217 43.478 0.00 0.00 0.00 4.09
3170 3665 5.608860 AGCCACTATTTTCCCTAAGCTCTAT 59.391 40.000 0.00 0.00 0.00 1.98
3171 3666 5.703130 GCCACTATTTTCCCTAAGCTCTATG 59.297 44.000 0.00 0.00 0.00 2.23
3172 3667 5.703130 CCACTATTTTCCCTAAGCTCTATGC 59.297 44.000 0.00 0.00 43.29 3.14
3173 3668 5.703130 CACTATTTTCCCTAAGCTCTATGCC 59.297 44.000 0.00 0.00 44.23 4.40
3174 3669 2.910688 TTTCCCTAAGCTCTATGCCG 57.089 50.000 0.00 0.00 44.23 5.69
3175 3670 1.789523 TTCCCTAAGCTCTATGCCGT 58.210 50.000 0.00 0.00 44.23 5.68
3177 3672 3.170991 TCCCTAAGCTCTATGCCGTAT 57.829 47.619 0.00 0.00 44.23 3.06
3198 3757 9.687210 CCGTATATGTAGTGCATAAGTTCTTAA 57.313 33.333 4.95 0.00 42.68 1.85
3209 4018 9.968743 GTGCATAAGTTCTTAATTGTAGTGTAC 57.031 33.333 0.00 0.00 0.00 2.90
3218 4027 8.597662 TCTTAATTGTAGTGTACTTTGGTGTC 57.402 34.615 0.00 0.00 0.00 3.67
3223 4032 6.904463 TGTAGTGTACTTTGGTGTCTATGA 57.096 37.500 0.00 0.00 0.00 2.15
3238 4047 7.602644 TGGTGTCTATGAATGTCTTAGTCAAAC 59.397 37.037 0.00 0.00 36.90 2.93
3247 4056 7.721842 TGAATGTCTTAGTCAAACCCATGTTTA 59.278 33.333 0.00 0.00 42.73 2.01
3269 4078 9.834628 GTTTATTTTACCGATTCTGAAATGACA 57.165 29.630 0.00 0.00 0.00 3.58
3300 4109 4.526262 CACTTTGGTGGGAATGGATGTTTA 59.474 41.667 0.00 0.00 39.59 2.01
3301 4110 4.772100 ACTTTGGTGGGAATGGATGTTTAG 59.228 41.667 0.00 0.00 0.00 1.85
3302 4111 4.396357 TTGGTGGGAATGGATGTTTAGT 57.604 40.909 0.00 0.00 0.00 2.24
3303 4112 5.522315 TTGGTGGGAATGGATGTTTAGTA 57.478 39.130 0.00 0.00 0.00 1.82
3304 4113 4.850680 TGGTGGGAATGGATGTTTAGTAC 58.149 43.478 0.00 0.00 0.00 2.73
3305 4114 4.538490 TGGTGGGAATGGATGTTTAGTACT 59.462 41.667 0.00 0.00 0.00 2.73
3306 4115 5.727279 TGGTGGGAATGGATGTTTAGTACTA 59.273 40.000 0.00 0.00 0.00 1.82
3307 4116 6.053650 GGTGGGAATGGATGTTTAGTACTAC 58.946 44.000 0.91 0.00 0.00 2.73
3308 4117 6.053650 GTGGGAATGGATGTTTAGTACTACC 58.946 44.000 0.91 0.69 0.00 3.18
3309 4118 5.968167 TGGGAATGGATGTTTAGTACTACCT 59.032 40.000 0.91 0.00 0.00 3.08
3310 4119 6.099269 TGGGAATGGATGTTTAGTACTACCTC 59.901 42.308 0.91 0.00 0.00 3.85
3311 4120 6.464039 GGGAATGGATGTTTAGTACTACCTCC 60.464 46.154 0.91 7.54 0.00 4.30
3312 4121 5.786264 ATGGATGTTTAGTACTACCTCCG 57.214 43.478 0.91 0.00 0.00 4.63
3313 4122 4.603131 TGGATGTTTAGTACTACCTCCGT 58.397 43.478 0.91 0.00 0.00 4.69
3314 4123 4.641989 TGGATGTTTAGTACTACCTCCGTC 59.358 45.833 0.91 2.21 0.00 4.79
3315 4124 4.886489 GGATGTTTAGTACTACCTCCGTCT 59.114 45.833 0.91 0.00 0.00 4.18
3316 4125 5.008514 GGATGTTTAGTACTACCTCCGTCTC 59.991 48.000 0.91 0.00 0.00 3.36
3317 4126 3.935203 TGTTTAGTACTACCTCCGTCTCG 59.065 47.826 0.91 0.00 0.00 4.04
3329 4138 2.933495 CCGTCTCGGTCAATAAGTCA 57.067 50.000 0.00 0.00 42.73 3.41
3330 4139 3.438297 CCGTCTCGGTCAATAAGTCAT 57.562 47.619 0.00 0.00 42.73 3.06
3331 4140 3.782046 CCGTCTCGGTCAATAAGTCATT 58.218 45.455 0.00 0.00 42.73 2.57
3332 4141 3.797256 CCGTCTCGGTCAATAAGTCATTC 59.203 47.826 0.00 0.00 42.73 2.67
3333 4142 3.482472 CGTCTCGGTCAATAAGTCATTCG 59.518 47.826 0.00 0.00 0.00 3.34
3334 4143 3.243177 GTCTCGGTCAATAAGTCATTCGC 59.757 47.826 0.00 0.00 0.00 4.70
3335 4144 2.190161 TCGGTCAATAAGTCATTCGCG 58.810 47.619 0.00 0.00 0.00 5.87
3336 4145 1.924524 CGGTCAATAAGTCATTCGCGT 59.075 47.619 5.77 0.00 0.00 6.01
3337 4146 3.110358 CGGTCAATAAGTCATTCGCGTA 58.890 45.455 5.77 0.00 0.00 4.42
3338 4147 3.179795 CGGTCAATAAGTCATTCGCGTAG 59.820 47.826 5.77 0.00 0.00 3.51
3339 4148 4.110482 GGTCAATAAGTCATTCGCGTAGT 58.890 43.478 5.77 0.00 0.00 2.73
3340 4149 4.565564 GGTCAATAAGTCATTCGCGTAGTT 59.434 41.667 5.77 2.59 0.00 2.24
3341 4150 5.276254 GGTCAATAAGTCATTCGCGTAGTTC 60.276 44.000 5.77 0.00 0.00 3.01
3342 4151 5.515626 GTCAATAAGTCATTCGCGTAGTTCT 59.484 40.000 5.77 0.00 0.00 3.01
3343 4152 6.690098 GTCAATAAGTCATTCGCGTAGTTCTA 59.310 38.462 5.77 0.00 0.00 2.10
3344 4153 7.378995 GTCAATAAGTCATTCGCGTAGTTCTAT 59.621 37.037 5.77 0.00 0.00 1.98
3345 4154 7.378728 TCAATAAGTCATTCGCGTAGTTCTATG 59.621 37.037 5.77 0.44 0.00 2.23
3346 4155 4.634184 AGTCATTCGCGTAGTTCTATGT 57.366 40.909 5.77 0.00 0.00 2.29
3347 4156 4.599047 AGTCATTCGCGTAGTTCTATGTC 58.401 43.478 5.77 0.00 0.00 3.06
3348 4157 3.417969 GTCATTCGCGTAGTTCTATGTCG 59.582 47.826 5.77 5.62 0.00 4.35
3349 4158 3.310501 TCATTCGCGTAGTTCTATGTCGA 59.689 43.478 5.77 11.39 0.00 4.20
3350 4159 2.726555 TCGCGTAGTTCTATGTCGAC 57.273 50.000 9.11 9.11 0.00 4.20
3351 4160 1.005662 TCGCGTAGTTCTATGTCGACG 60.006 52.381 11.62 0.00 36.21 5.12
3352 4161 1.005662 CGCGTAGTTCTATGTCGACGA 60.006 52.381 11.62 0.00 35.42 4.20
3353 4162 2.348311 CGCGTAGTTCTATGTCGACGAT 60.348 50.000 11.62 8.26 35.42 3.73
3354 4163 3.615614 GCGTAGTTCTATGTCGACGATT 58.384 45.455 11.62 0.70 35.42 3.34
3355 4164 4.033684 GCGTAGTTCTATGTCGACGATTT 58.966 43.478 11.62 0.00 35.42 2.17
3356 4165 5.200454 GCGTAGTTCTATGTCGACGATTTA 58.800 41.667 11.62 0.00 35.42 1.40
3357 4166 5.678483 GCGTAGTTCTATGTCGACGATTTAA 59.322 40.000 11.62 0.00 35.42 1.52
3358 4167 6.343770 GCGTAGTTCTATGTCGACGATTTAAC 60.344 42.308 11.62 11.06 35.42 2.01
3359 4168 6.904011 CGTAGTTCTATGTCGACGATTTAACT 59.096 38.462 19.82 19.82 35.42 2.24
3360 4169 8.058328 CGTAGTTCTATGTCGACGATTTAACTA 58.942 37.037 18.42 18.42 35.42 2.24
3361 4170 9.875675 GTAGTTCTATGTCGACGATTTAACTAT 57.124 33.333 22.11 8.36 31.72 2.12
3363 4172 8.838365 AGTTCTATGTCGACGATTTAACTATCT 58.162 33.333 11.62 0.00 0.00 1.98
3430 4239 6.716934 ACATCCGTGTAGAAATCTAGTGAT 57.283 37.500 0.00 0.00 36.63 3.06
3431 4240 7.818997 ACATCCGTGTAGAAATCTAGTGATA 57.181 36.000 0.00 0.00 36.63 2.15
3432 4241 8.410673 ACATCCGTGTAGAAATCTAGTGATAT 57.589 34.615 0.00 0.00 36.63 1.63
3433 4242 9.516546 ACATCCGTGTAGAAATCTAGTGATATA 57.483 33.333 0.00 0.00 36.63 0.86
3479 4288 9.831737 CATATTTAATTCCTCAAATCGATGACC 57.168 33.333 0.00 0.00 0.00 4.02
3480 4289 9.799106 ATATTTAATTCCTCAAATCGATGACCT 57.201 29.630 0.00 0.00 0.00 3.85
3482 4291 8.662781 TTTAATTCCTCAAATCGATGACCTAG 57.337 34.615 0.00 0.00 0.00 3.02
3483 4292 6.485830 AATTCCTCAAATCGATGACCTAGA 57.514 37.500 0.00 0.00 0.00 2.43
3484 4293 5.932619 TTCCTCAAATCGATGACCTAGAA 57.067 39.130 0.00 0.00 0.00 2.10
3485 4294 5.263968 TCCTCAAATCGATGACCTAGAAC 57.736 43.478 0.00 0.00 0.00 3.01
3486 4295 4.956700 TCCTCAAATCGATGACCTAGAACT 59.043 41.667 0.00 0.00 0.00 3.01
3487 4296 6.127101 TCCTCAAATCGATGACCTAGAACTA 58.873 40.000 0.00 0.00 0.00 2.24
3488 4297 6.039493 TCCTCAAATCGATGACCTAGAACTAC 59.961 42.308 0.00 0.00 0.00 2.73
3489 4298 5.817988 TCAAATCGATGACCTAGAACTACG 58.182 41.667 0.00 0.00 0.00 3.51
3490 4299 5.356190 TCAAATCGATGACCTAGAACTACGT 59.644 40.000 0.00 0.00 0.00 3.57
3491 4300 4.815040 ATCGATGACCTAGAACTACGTG 57.185 45.455 0.00 0.00 0.00 4.49
3492 4301 3.865446 TCGATGACCTAGAACTACGTGA 58.135 45.455 0.00 0.00 0.00 4.35
3493 4302 4.256110 TCGATGACCTAGAACTACGTGAA 58.744 43.478 0.00 0.00 0.00 3.18
3494 4303 4.880120 TCGATGACCTAGAACTACGTGAAT 59.120 41.667 0.00 0.00 0.00 2.57
3495 4304 4.970611 CGATGACCTAGAACTACGTGAATG 59.029 45.833 0.00 0.00 0.00 2.67
3496 4305 5.220796 CGATGACCTAGAACTACGTGAATGA 60.221 44.000 0.00 0.00 0.00 2.57
3497 4306 5.306532 TGACCTAGAACTACGTGAATGAC 57.693 43.478 0.00 0.00 0.00 3.06
3498 4307 5.008331 TGACCTAGAACTACGTGAATGACT 58.992 41.667 0.00 0.00 0.00 3.41
3499 4308 5.475909 TGACCTAGAACTACGTGAATGACTT 59.524 40.000 0.00 0.00 0.00 3.01
3500 4309 6.656270 TGACCTAGAACTACGTGAATGACTTA 59.344 38.462 0.00 0.00 0.00 2.24
3501 4310 7.338703 TGACCTAGAACTACGTGAATGACTTAT 59.661 37.037 0.00 0.00 0.00 1.73
3502 4311 8.064336 ACCTAGAACTACGTGAATGACTTATT 57.936 34.615 0.00 0.00 0.00 1.40
3503 4312 8.189460 ACCTAGAACTACGTGAATGACTTATTC 58.811 37.037 0.00 0.00 44.45 1.75
3514 4323 6.145338 GAATGACTTATTCACCTAGACGGA 57.855 41.667 0.00 0.00 43.79 4.69
3515 4324 5.776173 ATGACTTATTCACCTAGACGGAG 57.224 43.478 0.00 0.00 36.92 4.63
3516 4325 3.952323 TGACTTATTCACCTAGACGGAGG 59.048 47.826 0.00 0.00 42.89 4.30
3530 4339 7.424001 CCTAGACGGAGGTAGTAGTTTTAATG 58.576 42.308 0.00 0.00 33.16 1.90
3535 4344 7.444299 ACGGAGGTAGTAGTTTTAATGTTTCA 58.556 34.615 0.00 0.00 0.00 2.69
3560 4369 3.893200 ACAATGTGGCTAATGGATCCATG 59.107 43.478 27.97 17.03 36.68 3.66
3561 4370 2.662535 TGTGGCTAATGGATCCATGG 57.337 50.000 27.97 22.34 36.68 3.66
3562 4371 2.134354 TGTGGCTAATGGATCCATGGA 58.866 47.619 27.97 18.88 36.68 3.41
3563 4372 2.107031 TGTGGCTAATGGATCCATGGAG 59.893 50.000 27.97 25.50 36.68 3.86
3564 4373 1.074405 TGGCTAATGGATCCATGGAGC 59.926 52.381 34.27 34.27 41.58 4.70
3622 4443 8.543774 ACAATGTCTCTGTTTGTCCTCTATATT 58.456 33.333 0.00 0.00 0.00 1.28
3624 4445 7.962995 TGTCTCTGTTTGTCCTCTATATTCT 57.037 36.000 0.00 0.00 0.00 2.40
3625 4446 8.367660 TGTCTCTGTTTGTCCTCTATATTCTT 57.632 34.615 0.00 0.00 0.00 2.52
3626 4447 8.253810 TGTCTCTGTTTGTCCTCTATATTCTTG 58.746 37.037 0.00 0.00 0.00 3.02
3628 4449 8.470805 TCTCTGTTTGTCCTCTATATTCTTGTC 58.529 37.037 0.00 0.00 0.00 3.18
3630 4451 6.650120 TGTTTGTCCTCTATATTCTTGTCCC 58.350 40.000 0.00 0.00 0.00 4.46
3631 4452 6.214615 TGTTTGTCCTCTATATTCTTGTCCCA 59.785 38.462 0.00 0.00 0.00 4.37
3633 4454 6.425210 TGTCCTCTATATTCTTGTCCCATG 57.575 41.667 0.00 0.00 0.00 3.66
3636 4831 4.999950 CCTCTATATTCTTGTCCCATGCAC 59.000 45.833 0.00 0.00 0.00 4.57
3652 4847 1.933997 CACGCACGCGGCAATAATG 60.934 57.895 16.70 0.00 45.17 1.90
3676 4871 2.618241 TGTCTTGCGAAATGACAAGCTT 59.382 40.909 0.00 0.00 42.41 3.74
3677 4872 3.812609 TGTCTTGCGAAATGACAAGCTTA 59.187 39.130 0.00 0.00 42.41 3.09
3678 4873 4.455533 TGTCTTGCGAAATGACAAGCTTAT 59.544 37.500 0.00 0.00 42.41 1.73
3679 4874 5.024555 GTCTTGCGAAATGACAAGCTTATC 58.975 41.667 0.00 0.00 42.41 1.75
3681 4876 6.036083 GTCTTGCGAAATGACAAGCTTATCTA 59.964 38.462 6.26 0.00 42.41 1.98
3682 4877 5.973651 TGCGAAATGACAAGCTTATCTAG 57.026 39.130 6.26 0.00 0.00 2.43
3731 4926 4.986645 TGCACTGCATCCACGCGT 62.987 61.111 5.58 5.58 31.71 6.01
3749 4944 2.604614 GCGTGGTGACATCCAAGTTTTC 60.605 50.000 10.10 0.00 46.14 2.29
3763 4958 4.467735 CAAGTTTTCCGAAAGCTAGCTTC 58.532 43.478 29.42 20.28 34.84 3.86
3768 4963 4.481368 TTCCGAAAGCTAGCTTCCATAA 57.519 40.909 29.42 18.09 34.84 1.90
3774 4969 4.972514 AAGCTAGCTTCCATAAACAAGC 57.027 40.909 24.42 0.00 44.63 4.01
3777 4972 3.691609 GCTAGCTTCCATAAACAAGCACT 59.308 43.478 7.70 0.00 46.37 4.40
3778 4973 4.201861 GCTAGCTTCCATAAACAAGCACTC 60.202 45.833 7.70 0.00 46.37 3.51
3779 4974 3.084786 AGCTTCCATAAACAAGCACTCC 58.915 45.455 6.44 0.00 46.37 3.85
3780 4975 2.159517 GCTTCCATAAACAAGCACTCCG 60.160 50.000 0.00 0.00 43.87 4.63
3782 4977 2.422597 TCCATAAACAAGCACTCCGTG 58.577 47.619 0.00 0.00 36.51 4.94
3830 5043 3.250744 CATGCTGGAACTGATTTGCTTG 58.749 45.455 0.00 0.00 0.00 4.01
3838 5051 4.919754 GGAACTGATTTGCTTGACAACATC 59.080 41.667 0.00 0.00 38.23 3.06
3842 5055 5.011329 ACTGATTTGCTTGACAACATCCATT 59.989 36.000 0.00 0.00 38.23 3.16
3843 5056 5.472148 TGATTTGCTTGACAACATCCATTC 58.528 37.500 0.00 0.00 38.23 2.67
3848 5073 3.777478 CTTGACAACATCCATTCCATGC 58.223 45.455 0.00 0.00 0.00 4.06
3858 5083 7.288810 ACATCCATTCCATGCGTATAATTTT 57.711 32.000 0.00 0.00 0.00 1.82
3873 5098 7.685884 GCGTATAATTTTTCCTAAATGGCCCTT 60.686 37.037 0.00 0.00 35.26 3.95
3874 5099 8.852135 CGTATAATTTTTCCTAAATGGCCCTTA 58.148 33.333 0.00 0.00 35.26 2.69
3877 5102 5.748670 TTTTTCCTAAATGGCCCTTAACC 57.251 39.130 0.00 0.00 35.26 2.85
3879 5104 4.405756 TTCCTAAATGGCCCTTAACCAA 57.594 40.909 0.00 0.00 41.49 3.67
3880 5105 3.976015 TCCTAAATGGCCCTTAACCAAG 58.024 45.455 0.00 0.00 41.49 3.61
3881 5106 2.430694 CCTAAATGGCCCTTAACCAAGC 59.569 50.000 0.00 0.00 41.49 4.01
3883 5108 3.466395 AAATGGCCCTTAACCAAGCTA 57.534 42.857 0.00 0.00 41.49 3.32
3885 5110 2.982339 TGGCCCTTAACCAAGCTAAA 57.018 45.000 0.00 0.00 33.12 1.85
3886 5111 3.466395 TGGCCCTTAACCAAGCTAAAT 57.534 42.857 0.00 0.00 33.12 1.40
3888 5113 2.693591 GGCCCTTAACCAAGCTAAATCC 59.306 50.000 0.00 0.00 0.00 3.01
3889 5114 2.693591 GCCCTTAACCAAGCTAAATCCC 59.306 50.000 0.00 0.00 0.00 3.85
3890 5115 3.880117 GCCCTTAACCAAGCTAAATCCCA 60.880 47.826 0.00 0.00 0.00 4.37
3892 5117 4.584743 CCCTTAACCAAGCTAAATCCCATC 59.415 45.833 0.00 0.00 0.00 3.51
3893 5118 5.200483 CCTTAACCAAGCTAAATCCCATCA 58.800 41.667 0.00 0.00 0.00 3.07
3894 5119 5.656416 CCTTAACCAAGCTAAATCCCATCAA 59.344 40.000 0.00 0.00 0.00 2.57
3895 5120 6.324770 CCTTAACCAAGCTAAATCCCATCAAT 59.675 38.462 0.00 0.00 0.00 2.57
3897 5122 3.385755 ACCAAGCTAAATCCCATCAATGC 59.614 43.478 0.00 0.00 0.00 3.56
3898 5123 3.385433 CCAAGCTAAATCCCATCAATGCA 59.615 43.478 0.00 0.00 0.00 3.96
3899 5124 4.039973 CCAAGCTAAATCCCATCAATGCAT 59.960 41.667 0.00 0.00 0.00 3.96
3900 5125 5.454187 CCAAGCTAAATCCCATCAATGCATT 60.454 40.000 5.99 5.99 0.00 3.56
3901 5126 5.209818 AGCTAAATCCCATCAATGCATTG 57.790 39.130 29.75 29.75 39.10 2.82
3902 5127 4.039973 AGCTAAATCCCATCAATGCATTGG 59.960 41.667 33.22 21.62 38.30 3.16
3903 5128 2.922740 AATCCCATCAATGCATTGGC 57.077 45.000 33.22 0.00 38.30 4.52
3904 5129 2.097110 ATCCCATCAATGCATTGGCT 57.903 45.000 33.22 20.87 41.91 4.75
3905 5130 1.868713 TCCCATCAATGCATTGGCTT 58.131 45.000 33.22 18.80 41.91 4.35
3906 5131 3.029483 TCCCATCAATGCATTGGCTTA 57.971 42.857 33.22 18.35 41.91 3.09
3907 5132 3.578978 TCCCATCAATGCATTGGCTTAT 58.421 40.909 33.22 19.65 41.91 1.73
3908 5133 3.968649 TCCCATCAATGCATTGGCTTATT 59.031 39.130 33.22 12.95 41.91 1.40
3909 5134 4.039488 TCCCATCAATGCATTGGCTTATTC 59.961 41.667 33.22 0.00 41.91 1.75
3910 5135 4.312443 CCATCAATGCATTGGCTTATTCC 58.688 43.478 33.22 0.00 41.91 3.01
3911 5136 4.202274 CCATCAATGCATTGGCTTATTCCA 60.202 41.667 33.22 15.31 41.91 3.53
3955 5180 2.191128 ATCTTGGTTGACAGAGCACC 57.809 50.000 0.00 0.00 0.00 5.01
3975 5200 2.163010 CCACACAGCTCAAATAAGCCTG 59.837 50.000 0.00 0.00 43.56 4.85
3976 5201 1.815003 ACACAGCTCAAATAAGCCTGC 59.185 47.619 0.00 0.00 43.56 4.85
4040 5266 4.460731 TGTCTAGACTGACCTTGACTCATG 59.539 45.833 23.01 0.00 38.88 3.07
4044 5272 0.617413 CTGACCTTGACTCATGGGCT 59.383 55.000 16.05 0.00 37.55 5.19
4046 5274 0.393537 GACCTTGACTCATGGGCTGG 60.394 60.000 14.03 0.00 34.33 4.85
4058 5286 4.783621 GGCTGGCCGCTGTCATGA 62.784 66.667 17.07 0.00 39.13 3.07
4072 5300 4.157656 GCTGTCATGACTAGAAGACTGACT 59.842 45.833 25.55 0.00 35.27 3.41
4073 5301 5.355630 GCTGTCATGACTAGAAGACTGACTA 59.644 44.000 25.55 0.23 35.27 2.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 9.445786 CGTCACTACAAATTTAGTGTCAAATTT 57.554 29.630 16.87 1.69 46.27 1.82
9 10 8.617809 ACGTCACTACAAATTTAGTGTCAAATT 58.382 29.630 16.87 0.00 46.27 1.82
10 11 8.149973 ACGTCACTACAAATTTAGTGTCAAAT 57.850 30.769 16.87 2.71 46.27 2.32
11 12 7.515528 CGACGTCACTACAAATTTAGTGTCAAA 60.516 37.037 17.16 0.36 46.27 2.69
12 13 6.074729 CGACGTCACTACAAATTTAGTGTCAA 60.075 38.462 17.16 0.65 46.27 3.18
13 14 5.400188 CGACGTCACTACAAATTTAGTGTCA 59.600 40.000 17.16 1.23 46.27 3.58
14 15 5.164119 CCGACGTCACTACAAATTTAGTGTC 60.164 44.000 17.16 12.24 46.27 3.67
15 16 4.682860 CCGACGTCACTACAAATTTAGTGT 59.317 41.667 17.16 4.16 46.27 3.55
17 18 5.125100 TCCGACGTCACTACAAATTTAGT 57.875 39.130 17.16 0.00 32.16 2.24
18 19 6.642683 AATCCGACGTCACTACAAATTTAG 57.357 37.500 17.16 0.00 0.00 1.85
19 20 8.706492 ATAAATCCGACGTCACTACAAATTTA 57.294 30.769 17.16 12.84 0.00 1.40
20 21 5.934935 AAATCCGACGTCACTACAAATTT 57.065 34.783 17.16 7.05 0.00 1.82
21 22 8.761497 CATATAAATCCGACGTCACTACAAATT 58.239 33.333 17.16 1.34 0.00 1.82
22 23 7.095774 GCATATAAATCCGACGTCACTACAAAT 60.096 37.037 17.16 3.17 0.00 2.32
23 24 6.199531 GCATATAAATCCGACGTCACTACAAA 59.800 38.462 17.16 0.00 0.00 2.83
24 25 5.688621 GCATATAAATCCGACGTCACTACAA 59.311 40.000 17.16 0.00 0.00 2.41
25 26 5.217393 GCATATAAATCCGACGTCACTACA 58.783 41.667 17.16 0.00 0.00 2.74
26 27 4.620184 GGCATATAAATCCGACGTCACTAC 59.380 45.833 17.16 0.00 0.00 2.73
27 28 4.521639 AGGCATATAAATCCGACGTCACTA 59.478 41.667 17.16 0.00 0.00 2.74
28 29 3.321111 AGGCATATAAATCCGACGTCACT 59.679 43.478 17.16 0.00 0.00 3.41
29 30 3.650139 AGGCATATAAATCCGACGTCAC 58.350 45.455 17.16 0.00 0.00 3.67
30 31 4.617530 GCTAGGCATATAAATCCGACGTCA 60.618 45.833 17.16 0.00 0.00 4.35
31 32 3.858238 GCTAGGCATATAAATCCGACGTC 59.142 47.826 5.18 5.18 0.00 4.34
32 33 3.510360 AGCTAGGCATATAAATCCGACGT 59.490 43.478 0.00 0.00 0.00 4.34
33 34 4.111375 AGCTAGGCATATAAATCCGACG 57.889 45.455 0.00 0.00 0.00 5.12
34 35 6.183360 TGGATAGCTAGGCATATAAATCCGAC 60.183 42.308 0.00 0.00 35.46 4.79
35 36 5.897250 TGGATAGCTAGGCATATAAATCCGA 59.103 40.000 0.00 0.00 35.46 4.55
36 37 6.161855 TGGATAGCTAGGCATATAAATCCG 57.838 41.667 0.00 0.00 35.46 4.18
39 40 9.512588 GCAATATGGATAGCTAGGCATATAAAT 57.487 33.333 0.00 0.00 0.00 1.40
40 41 7.939039 GGCAATATGGATAGCTAGGCATATAAA 59.061 37.037 0.00 0.00 0.00 1.40
41 42 7.453393 GGCAATATGGATAGCTAGGCATATAA 58.547 38.462 0.00 0.00 0.00 0.98
42 43 6.295292 CGGCAATATGGATAGCTAGGCATATA 60.295 42.308 0.00 0.00 0.00 0.86
43 44 5.512060 CGGCAATATGGATAGCTAGGCATAT 60.512 44.000 0.00 0.00 0.00 1.78
44 45 4.202253 CGGCAATATGGATAGCTAGGCATA 60.202 45.833 0.00 0.00 0.00 3.14
45 46 3.432749 CGGCAATATGGATAGCTAGGCAT 60.433 47.826 0.00 0.00 0.00 4.40
46 47 2.093500 CGGCAATATGGATAGCTAGGCA 60.093 50.000 0.00 0.00 0.00 4.75
47 48 2.093447 ACGGCAATATGGATAGCTAGGC 60.093 50.000 0.00 0.00 0.00 3.93
48 49 3.895232 ACGGCAATATGGATAGCTAGG 57.105 47.619 0.00 0.00 0.00 3.02
49 50 7.667043 TTTTTACGGCAATATGGATAGCTAG 57.333 36.000 0.00 0.00 0.00 3.42
70 71 5.435291 TGACCATGGCAAATCAAACTTTTT 58.565 33.333 13.04 0.00 0.00 1.94
71 72 5.033589 TGACCATGGCAAATCAAACTTTT 57.966 34.783 13.04 0.00 0.00 2.27
72 73 4.686191 TGACCATGGCAAATCAAACTTT 57.314 36.364 13.04 0.00 0.00 2.66
73 74 4.686191 TTGACCATGGCAAATCAAACTT 57.314 36.364 13.04 0.00 0.00 2.66
74 75 4.686191 TTTGACCATGGCAAATCAAACT 57.314 36.364 22.50 0.00 36.42 2.66
75 76 5.747951 TTTTTGACCATGGCAAATCAAAC 57.252 34.783 25.12 4.97 39.96 2.93
76 77 6.060136 TGATTTTTGACCATGGCAAATCAAA 58.940 32.000 25.33 22.62 39.66 2.69
77 78 5.618236 TGATTTTTGACCATGGCAAATCAA 58.382 33.333 25.33 19.36 39.66 2.57
78 79 5.224821 TGATTTTTGACCATGGCAAATCA 57.775 34.783 25.12 24.79 40.09 2.57
79 80 5.702209 AGTTGATTTTTGACCATGGCAAATC 59.298 36.000 25.12 23.22 35.41 2.17
80 81 5.623169 AGTTGATTTTTGACCATGGCAAAT 58.377 33.333 25.12 18.09 35.41 2.32
81 82 5.033589 AGTTGATTTTTGACCATGGCAAA 57.966 34.783 22.50 22.50 33.76 3.68
82 83 4.686191 AGTTGATTTTTGACCATGGCAA 57.314 36.364 13.04 14.28 0.00 4.52
83 84 4.344679 AGAAGTTGATTTTTGACCATGGCA 59.655 37.500 13.04 8.31 0.00 4.92
84 85 4.886579 AGAAGTTGATTTTTGACCATGGC 58.113 39.130 13.04 5.35 0.00 4.40
85 86 6.336842 AGAGAAGTTGATTTTTGACCATGG 57.663 37.500 11.19 11.19 0.00 3.66
86 87 7.655490 AGAAGAGAAGTTGATTTTTGACCATG 58.345 34.615 0.00 0.00 0.00 3.66
87 88 7.830099 AGAAGAGAAGTTGATTTTTGACCAT 57.170 32.000 0.00 0.00 0.00 3.55
88 89 7.557719 AGAAGAAGAGAAGTTGATTTTTGACCA 59.442 33.333 0.00 0.00 0.00 4.02
89 90 7.859875 CAGAAGAAGAGAAGTTGATTTTTGACC 59.140 37.037 0.00 0.00 0.00 4.02
90 91 7.378194 GCAGAAGAAGAGAAGTTGATTTTTGAC 59.622 37.037 0.00 0.00 0.00 3.18
91 92 7.067372 TGCAGAAGAAGAGAAGTTGATTTTTGA 59.933 33.333 0.00 0.00 0.00 2.69
92 93 7.198390 TGCAGAAGAAGAGAAGTTGATTTTTG 58.802 34.615 0.00 0.00 0.00 2.44
93 94 7.338800 TGCAGAAGAAGAGAAGTTGATTTTT 57.661 32.000 0.00 0.00 0.00 1.94
94 95 6.949352 TGCAGAAGAAGAGAAGTTGATTTT 57.051 33.333 0.00 0.00 0.00 1.82
95 96 6.949352 TTGCAGAAGAAGAGAAGTTGATTT 57.051 33.333 0.00 0.00 0.00 2.17
113 114 0.758123 TTCAAAAGGCCCCTTTGCAG 59.242 50.000 18.84 6.88 44.50 4.41
114 115 1.140652 CTTTCAAAAGGCCCCTTTGCA 59.859 47.619 18.84 9.03 44.50 4.08
121 122 1.221466 GCGTTGCTTTCAAAAGGCCC 61.221 55.000 0.00 0.00 36.53 5.80
122 123 1.221466 GGCGTTGCTTTCAAAAGGCC 61.221 55.000 0.00 0.00 37.79 5.19
124 125 0.103937 TGGGCGTTGCTTTCAAAAGG 59.896 50.000 4.76 0.00 36.53 3.11
125 126 1.490621 CTGGGCGTTGCTTTCAAAAG 58.509 50.000 0.00 0.00 39.03 2.27
131 137 2.203337 TCTGCTGGGCGTTGCTTT 60.203 55.556 0.00 0.00 0.00 3.51
140 146 0.251354 AGTGTATGCAGTCTGCTGGG 59.749 55.000 24.76 0.00 45.31 4.45
167 173 7.175990 TCGCCTTGGAAATTACTTGTAAGAATT 59.824 33.333 0.00 0.00 0.00 2.17
168 174 6.657541 TCGCCTTGGAAATTACTTGTAAGAAT 59.342 34.615 0.00 0.00 0.00 2.40
174 180 2.817844 GGTCGCCTTGGAAATTACTTGT 59.182 45.455 0.00 0.00 0.00 3.16
188 206 0.250901 ATGTTGCTTTCAGGTCGCCT 60.251 50.000 0.00 0.00 0.00 5.52
217 235 0.951558 GACCGTGTTTGGCATTCTGT 59.048 50.000 0.00 0.00 0.00 3.41
218 236 0.110238 CGACCGTGTTTGGCATTCTG 60.110 55.000 0.00 0.00 0.00 3.02
219 237 0.534203 ACGACCGTGTTTGGCATTCT 60.534 50.000 0.00 0.00 0.00 2.40
220 238 0.309612 AACGACCGTGTTTGGCATTC 59.690 50.000 0.00 0.00 0.00 2.67
222 240 1.816074 ATAACGACCGTGTTTGGCAT 58.184 45.000 0.00 0.00 33.32 4.40
223 241 1.595466 AATAACGACCGTGTTTGGCA 58.405 45.000 0.00 0.00 33.32 4.92
225 243 4.996062 AACTAATAACGACCGTGTTTGG 57.004 40.909 0.00 0.00 33.32 3.28
226 244 7.685304 GTCAATAACTAATAACGACCGTGTTTG 59.315 37.037 0.00 0.00 33.32 2.93
227 245 7.384660 TGTCAATAACTAATAACGACCGTGTTT 59.615 33.333 0.00 0.00 33.32 2.83
230 248 6.874297 TGTCAATAACTAATAACGACCGTG 57.126 37.500 0.00 0.00 0.00 4.94
251 272 4.073293 GGTCCTTGTCCGATATGATTGT 57.927 45.455 0.00 0.00 0.00 2.71
261 307 0.538118 TATTTCCCGGTCCTTGTCCG 59.462 55.000 0.00 0.00 46.49 4.79
262 308 4.635699 ATATATTTCCCGGTCCTTGTCC 57.364 45.455 0.00 0.00 0.00 4.02
263 309 6.600882 TCTATATATTTCCCGGTCCTTGTC 57.399 41.667 0.00 0.00 0.00 3.18
264 310 8.674925 TTATCTATATATTTCCCGGTCCTTGT 57.325 34.615 0.00 0.00 0.00 3.16
265 311 9.765795 GATTATCTATATATTTCCCGGTCCTTG 57.234 37.037 0.00 0.00 0.00 3.61
266 312 8.639761 CGATTATCTATATATTTCCCGGTCCTT 58.360 37.037 0.00 0.00 0.00 3.36
267 313 8.003044 TCGATTATCTATATATTTCCCGGTCCT 58.997 37.037 0.00 0.00 0.00 3.85
268 314 8.174733 TCGATTATCTATATATTTCCCGGTCC 57.825 38.462 0.00 0.00 0.00 4.46
311 358 3.189495 TGTTTGTCGTTGCTTTCACTTGA 59.811 39.130 0.00 0.00 0.00 3.02
344 391 1.210204 ATCAGCCTTCTTCCTGCCCA 61.210 55.000 0.00 0.00 0.00 5.36
352 399 3.721035 GTTGCAACAAATCAGCCTTCTT 58.279 40.909 24.52 0.00 0.00 2.52
426 484 2.110901 ATGCAGAGGAAGACAGCAAG 57.889 50.000 0.00 0.00 38.85 4.01
427 485 2.574006 AATGCAGAGGAAGACAGCAA 57.426 45.000 0.00 0.00 38.85 3.91
428 486 2.574006 AAATGCAGAGGAAGACAGCA 57.426 45.000 0.00 0.00 39.79 4.41
429 487 2.163211 GGAAAATGCAGAGGAAGACAGC 59.837 50.000 0.00 0.00 0.00 4.40
430 488 3.415212 TGGAAAATGCAGAGGAAGACAG 58.585 45.455 0.00 0.00 0.00 3.51
431 489 3.507162 TGGAAAATGCAGAGGAAGACA 57.493 42.857 0.00 0.00 0.00 3.41
432 490 3.823304 ACTTGGAAAATGCAGAGGAAGAC 59.177 43.478 0.00 0.00 0.00 3.01
433 491 3.822735 CACTTGGAAAATGCAGAGGAAGA 59.177 43.478 0.00 0.00 0.00 2.87
437 495 4.589216 TTTCACTTGGAAAATGCAGAGG 57.411 40.909 0.00 0.00 42.37 3.69
475 533 1.214367 ACGTTACGTGTGCCTCTTTG 58.786 50.000 10.39 0.00 39.18 2.77
477 535 1.664016 CGTACGTTACGTGTGCCTCTT 60.664 52.381 21.22 0.00 46.41 2.85
488 546 1.981254 TGCTGCTAACCGTACGTTAC 58.019 50.000 15.21 8.27 35.79 2.50
489 547 2.532235 CATGCTGCTAACCGTACGTTA 58.468 47.619 15.21 11.46 35.79 3.18
490 548 1.355971 CATGCTGCTAACCGTACGTT 58.644 50.000 15.21 10.92 38.57 3.99
587 703 0.533308 TGGTGTTGGCCGTGTAGTTC 60.533 55.000 0.00 0.00 0.00 3.01
642 758 0.386478 GCGTTCACCTCGTCGTAGTT 60.386 55.000 0.00 0.00 0.00 2.24
665 967 2.357836 AGGATGCAGCCTGGTTGG 59.642 61.111 25.67 0.00 36.76 3.77
939 1246 3.633609 GAGGCATGCCAGGCAGTCA 62.634 63.158 37.18 0.00 43.65 3.41
1146 1453 2.438868 TCTTATGGATCGTCGGCATG 57.561 50.000 0.00 0.00 0.00 4.06
1154 1461 8.388484 AGAAAGAAATGGAATCTTATGGATCG 57.612 34.615 0.00 0.00 32.76 3.69
1174 1484 1.298116 CATGCATGCGCGGAGAAAG 60.298 57.895 14.93 0.00 42.97 2.62
1274 1625 9.645128 ATGTCCTTCATAATTAAACATCCATGA 57.355 29.630 0.00 0.00 34.67 3.07
1339 1690 1.768870 AGAGCAACCAGTGTTACAGGT 59.231 47.619 0.00 0.00 39.90 4.00
1346 1697 4.787871 GCAGAGAGCAACCAGTGT 57.212 55.556 0.00 0.00 44.79 3.55
1451 1815 7.386851 TCGATCTCTGAAATTAGGACAGTTTT 58.613 34.615 0.00 0.00 33.93 2.43
1456 1820 5.531287 TCGATCGATCTCTGAAATTAGGACA 59.469 40.000 22.43 0.00 0.00 4.02
1533 1908 9.576037 TTCATCTCCTTGAAACTGGTGAGTACC 62.576 44.444 0.00 0.00 38.77 3.34
1714 2100 1.737838 TGCCTAGAAAACATGGAGCG 58.262 50.000 0.00 0.00 0.00 5.03
1715 2101 2.424956 CCTTGCCTAGAAAACATGGAGC 59.575 50.000 0.00 0.00 31.93 4.70
1770 2181 6.782988 ACCTCGGATCAATATTCTTCCTCTTA 59.217 38.462 10.17 0.00 0.00 2.10
1771 2182 5.604650 ACCTCGGATCAATATTCTTCCTCTT 59.395 40.000 10.17 0.00 0.00 2.85
1856 2267 8.819974 CAATATGCAACATTTAATCTGGGTTTC 58.180 33.333 0.00 0.00 0.00 2.78
1857 2268 8.538701 TCAATATGCAACATTTAATCTGGGTTT 58.461 29.630 0.00 0.00 0.00 3.27
2198 2681 9.868277 CAGTAGAACTTTTCTATCTTCATCTGT 57.132 33.333 0.00 0.00 43.59 3.41
2516 2999 4.574599 AGCCACTAAAACAAAGCAAGAG 57.425 40.909 0.00 0.00 0.00 2.85
2518 3001 5.181690 TGTAGCCACTAAAACAAAGCAAG 57.818 39.130 0.00 0.00 0.00 4.01
2662 3145 5.104569 TGCACTCACATATCCAATGAGGTTA 60.105 40.000 5.54 0.00 43.46 2.85
2751 3242 7.765819 GCCAAGCCTACTTTAAATTTCATTCAT 59.234 33.333 0.00 0.00 32.29 2.57
2752 3243 7.096551 GCCAAGCCTACTTTAAATTTCATTCA 58.903 34.615 0.00 0.00 32.29 2.57
2753 3244 7.096551 TGCCAAGCCTACTTTAAATTTCATTC 58.903 34.615 0.00 0.00 32.29 2.67
2754 3245 7.003402 TGCCAAGCCTACTTTAAATTTCATT 57.997 32.000 0.00 0.00 32.29 2.57
2767 3258 4.700213 TCTTCAAATAACTGCCAAGCCTAC 59.300 41.667 0.00 0.00 0.00 3.18
2779 3270 7.495934 TCGATCCATCTTTCCTCTTCAAATAAC 59.504 37.037 0.00 0.00 0.00 1.89
2905 3396 2.356135 ACAACATCTAACATGGTCGGC 58.644 47.619 0.00 0.00 0.00 5.54
2917 3408 3.256383 TGCTTAGCATTGCAACAACATCT 59.744 39.130 11.91 0.00 36.15 2.90
3108 3603 2.367567 CACCCCCGCTACACTGTATAAT 59.632 50.000 0.00 0.00 0.00 1.28
3111 3606 0.616679 ACACCCCCGCTACACTGTAT 60.617 55.000 0.00 0.00 0.00 2.29
3114 3609 1.255667 ACTACACCCCCGCTACACTG 61.256 60.000 0.00 0.00 0.00 3.66
3119 3614 2.652095 GCACACTACACCCCCGCTA 61.652 63.158 0.00 0.00 0.00 4.26
3121 3616 4.016706 AGCACACTACACCCCCGC 62.017 66.667 0.00 0.00 0.00 6.13
3122 3617 2.047274 CAGCACACTACACCCCCG 60.047 66.667 0.00 0.00 0.00 5.73
3123 3618 2.351276 CCAGCACACTACACCCCC 59.649 66.667 0.00 0.00 0.00 5.40
3125 3620 2.351276 CCCCAGCACACTACACCC 59.649 66.667 0.00 0.00 0.00 4.61
3126 3621 1.302511 CACCCCAGCACACTACACC 60.303 63.158 0.00 0.00 0.00 4.16
3127 3622 0.682852 TACACCCCAGCACACTACAC 59.317 55.000 0.00 0.00 0.00 2.90
3129 3624 0.391263 GCTACACCCCAGCACACTAC 60.391 60.000 0.00 0.00 38.93 2.73
3131 3626 2.750350 GCTACACCCCAGCACACT 59.250 61.111 0.00 0.00 38.93 3.55
3132 3627 2.359975 GGCTACACCCCAGCACAC 60.360 66.667 0.00 0.00 40.95 3.82
3133 3628 2.851588 TGGCTACACCCCAGCACA 60.852 61.111 0.00 0.00 40.95 4.57
3134 3629 2.359975 GTGGCTACACCCCAGCAC 60.360 66.667 0.00 0.00 41.84 4.40
3143 3638 4.473559 AGCTTAGGGAAAATAGTGGCTACA 59.526 41.667 2.02 0.00 0.00 2.74
3144 3639 5.037383 AGCTTAGGGAAAATAGTGGCTAC 57.963 43.478 0.00 0.00 0.00 3.58
3146 3641 3.783082 AGAGCTTAGGGAAAATAGTGGCT 59.217 43.478 0.00 0.00 0.00 4.75
3149 3644 5.703130 GGCATAGAGCTTAGGGAAAATAGTG 59.297 44.000 0.00 0.00 44.79 2.74
3150 3645 5.511545 CGGCATAGAGCTTAGGGAAAATAGT 60.512 44.000 0.00 0.00 44.79 2.12
3151 3646 4.932200 CGGCATAGAGCTTAGGGAAAATAG 59.068 45.833 0.00 0.00 44.79 1.73
3152 3647 4.347000 ACGGCATAGAGCTTAGGGAAAATA 59.653 41.667 0.00 0.00 44.79 1.40
3153 3648 3.136626 ACGGCATAGAGCTTAGGGAAAAT 59.863 43.478 0.00 0.00 44.79 1.82
3154 3649 2.504175 ACGGCATAGAGCTTAGGGAAAA 59.496 45.455 0.00 0.00 44.79 2.29
3155 3650 2.116238 ACGGCATAGAGCTTAGGGAAA 58.884 47.619 0.00 0.00 44.79 3.13
3156 3651 1.789523 ACGGCATAGAGCTTAGGGAA 58.210 50.000 0.00 0.00 44.79 3.97
3159 3654 5.584253 ACATATACGGCATAGAGCTTAGG 57.416 43.478 0.00 0.00 44.79 2.69
3161 3656 6.404403 GCACTACATATACGGCATAGAGCTTA 60.404 42.308 0.00 0.00 44.79 3.09
3163 3658 4.142359 GCACTACATATACGGCATAGAGCT 60.142 45.833 0.00 0.00 44.79 4.09
3165 3660 5.310720 TGCACTACATATACGGCATAGAG 57.689 43.478 0.00 0.00 0.00 2.43
3167 3662 7.258441 ACTTATGCACTACATATACGGCATAG 58.742 38.462 0.00 0.00 42.86 2.23
3168 3663 7.165460 ACTTATGCACTACATATACGGCATA 57.835 36.000 0.00 0.00 40.93 3.14
3170 3665 5.462530 ACTTATGCACTACATATACGGCA 57.537 39.130 0.00 0.00 40.93 5.69
3171 3666 6.157211 AGAACTTATGCACTACATATACGGC 58.843 40.000 0.00 0.00 40.93 5.68
3172 3667 9.687210 TTAAGAACTTATGCACTACATATACGG 57.313 33.333 0.00 0.00 40.93 4.02
3198 3757 7.903145 TCATAGACACCAAAGTACACTACAAT 58.097 34.615 0.00 0.00 0.00 2.71
3199 3758 7.292713 TCATAGACACCAAAGTACACTACAA 57.707 36.000 0.00 0.00 0.00 2.41
3204 4013 6.874134 AGACATTCATAGACACCAAAGTACAC 59.126 38.462 0.00 0.00 0.00 2.90
3209 4018 7.819415 TGACTAAGACATTCATAGACACCAAAG 59.181 37.037 0.00 0.00 0.00 2.77
3218 4027 7.554118 ACATGGGTTTGACTAAGACATTCATAG 59.446 37.037 0.00 0.00 0.00 2.23
3223 4032 6.976934 AAACATGGGTTTGACTAAGACATT 57.023 33.333 0.00 0.00 45.22 2.71
3238 4047 7.328277 TCAGAATCGGTAAAATAAACATGGG 57.672 36.000 0.00 0.00 0.00 4.00
3247 4056 7.687941 ACTGTCATTTCAGAATCGGTAAAAT 57.312 32.000 0.65 0.00 38.63 1.82
3269 4078 4.986054 TTCCCACCAAAGTGTACATACT 57.014 40.909 0.00 0.00 42.88 2.12
3275 4084 3.075283 ACATCCATTCCCACCAAAGTGTA 59.925 43.478 0.00 0.00 42.88 2.90
3288 4097 6.183360 ACGGAGGTAGTACTAAACATCCATTC 60.183 42.308 22.76 8.12 44.77 2.67
3311 4120 3.482472 CGAATGACTTATTGACCGAGACG 59.518 47.826 0.00 0.00 0.00 4.18
3312 4121 3.243177 GCGAATGACTTATTGACCGAGAC 59.757 47.826 0.00 0.00 0.00 3.36
3313 4122 3.444916 GCGAATGACTTATTGACCGAGA 58.555 45.455 0.00 0.00 0.00 4.04
3314 4123 2.216488 CGCGAATGACTTATTGACCGAG 59.784 50.000 0.00 0.00 0.00 4.63
3315 4124 2.190161 CGCGAATGACTTATTGACCGA 58.810 47.619 0.00 0.00 0.00 4.69
3316 4125 1.924524 ACGCGAATGACTTATTGACCG 59.075 47.619 15.93 0.00 0.00 4.79
3317 4126 4.110482 ACTACGCGAATGACTTATTGACC 58.890 43.478 15.93 0.00 0.00 4.02
3318 4127 5.515626 AGAACTACGCGAATGACTTATTGAC 59.484 40.000 15.93 0.00 0.00 3.18
3319 4128 5.647589 AGAACTACGCGAATGACTTATTGA 58.352 37.500 15.93 0.00 0.00 2.57
3320 4129 5.950965 AGAACTACGCGAATGACTTATTG 57.049 39.130 15.93 0.00 0.00 1.90
3321 4130 7.201145 ACATAGAACTACGCGAATGACTTATT 58.799 34.615 15.93 0.00 0.00 1.40
3322 4131 6.736123 ACATAGAACTACGCGAATGACTTAT 58.264 36.000 15.93 0.00 0.00 1.73
3323 4132 6.127810 ACATAGAACTACGCGAATGACTTA 57.872 37.500 15.93 0.00 0.00 2.24
3324 4133 4.995124 ACATAGAACTACGCGAATGACTT 58.005 39.130 15.93 0.00 0.00 3.01
3325 4134 4.599047 GACATAGAACTACGCGAATGACT 58.401 43.478 15.93 9.07 0.00 3.41
3326 4135 3.417969 CGACATAGAACTACGCGAATGAC 59.582 47.826 15.93 0.66 0.00 3.06
3327 4136 3.310501 TCGACATAGAACTACGCGAATGA 59.689 43.478 15.93 0.00 0.00 2.57
3328 4137 3.417969 GTCGACATAGAACTACGCGAATG 59.582 47.826 15.93 4.47 0.00 2.67
3329 4138 3.615614 GTCGACATAGAACTACGCGAAT 58.384 45.455 15.93 0.00 0.00 3.34
3330 4139 2.535534 CGTCGACATAGAACTACGCGAA 60.536 50.000 15.93 0.00 0.00 4.70
3331 4140 1.005662 CGTCGACATAGAACTACGCGA 60.006 52.381 15.93 0.00 0.00 5.87
3332 4141 1.005662 TCGTCGACATAGAACTACGCG 60.006 52.381 17.16 3.53 0.00 6.01
3333 4142 2.726555 TCGTCGACATAGAACTACGC 57.273 50.000 17.16 0.00 0.00 4.42
3334 4143 6.904011 AGTTAAATCGTCGACATAGAACTACG 59.096 38.462 17.16 0.00 0.00 3.51
3335 4144 9.875675 ATAGTTAAATCGTCGACATAGAACTAC 57.124 33.333 17.16 3.74 31.67 2.73
3337 4146 8.838365 AGATAGTTAAATCGTCGACATAGAACT 58.162 33.333 17.16 17.77 0.00 3.01
3405 4214 9.000486 TATCACTAGATTTCTACACGGATGTAG 58.000 37.037 7.95 7.95 45.22 2.74
3406 4215 7.818997 ATCACTAGATTTCTACACGGATGTA 57.181 36.000 0.00 0.00 40.48 2.29
3407 4216 6.716934 ATCACTAGATTTCTACACGGATGT 57.283 37.500 0.00 0.00 43.30 3.06
3453 4262 9.831737 GGTCATCGATTTGAGGAATTAAATATG 57.168 33.333 0.00 0.00 39.46 1.78
3454 4263 9.799106 AGGTCATCGATTTGAGGAATTAAATAT 57.201 29.630 0.00 0.00 39.46 1.28
3456 4265 9.277783 CTAGGTCATCGATTTGAGGAATTAAAT 57.722 33.333 0.00 0.00 39.46 1.40
3457 4266 8.482943 TCTAGGTCATCGATTTGAGGAATTAAA 58.517 33.333 0.00 0.00 39.46 1.52
3458 4267 8.018537 TCTAGGTCATCGATTTGAGGAATTAA 57.981 34.615 0.00 0.00 39.46 1.40
3459 4268 7.597288 TCTAGGTCATCGATTTGAGGAATTA 57.403 36.000 0.00 0.00 39.46 1.40
3460 4269 6.485830 TCTAGGTCATCGATTTGAGGAATT 57.514 37.500 0.00 0.00 39.46 2.17
3461 4270 6.098982 AGTTCTAGGTCATCGATTTGAGGAAT 59.901 38.462 0.00 0.00 39.46 3.01
3462 4271 5.422331 AGTTCTAGGTCATCGATTTGAGGAA 59.578 40.000 0.00 0.00 39.46 3.36
3463 4272 4.956700 AGTTCTAGGTCATCGATTTGAGGA 59.043 41.667 0.00 0.00 34.44 3.71
3464 4273 5.269505 AGTTCTAGGTCATCGATTTGAGG 57.730 43.478 0.00 0.00 0.00 3.86
3465 4274 5.910166 CGTAGTTCTAGGTCATCGATTTGAG 59.090 44.000 0.00 0.00 0.00 3.02
3466 4275 5.356190 ACGTAGTTCTAGGTCATCGATTTGA 59.644 40.000 0.00 0.00 37.78 2.69
3467 4276 5.455849 CACGTAGTTCTAGGTCATCGATTTG 59.544 44.000 0.00 0.00 41.61 2.32
3468 4277 5.356190 TCACGTAGTTCTAGGTCATCGATTT 59.644 40.000 0.00 0.00 41.61 2.17
3469 4278 4.880120 TCACGTAGTTCTAGGTCATCGATT 59.120 41.667 0.00 0.00 41.61 3.34
3470 4279 4.449131 TCACGTAGTTCTAGGTCATCGAT 58.551 43.478 0.00 0.00 41.61 3.59
3471 4280 3.865446 TCACGTAGTTCTAGGTCATCGA 58.135 45.455 0.00 0.00 41.61 3.59
3472 4281 4.611310 TTCACGTAGTTCTAGGTCATCG 57.389 45.455 0.00 0.00 41.61 3.84
3473 4282 5.972382 GTCATTCACGTAGTTCTAGGTCATC 59.028 44.000 0.00 0.00 41.61 2.92
3474 4283 5.652891 AGTCATTCACGTAGTTCTAGGTCAT 59.347 40.000 0.00 0.00 41.61 3.06
3475 4284 5.008331 AGTCATTCACGTAGTTCTAGGTCA 58.992 41.667 0.00 0.00 41.61 4.02
3476 4285 5.564048 AGTCATTCACGTAGTTCTAGGTC 57.436 43.478 0.00 0.00 41.61 3.85
3477 4286 5.979288 AAGTCATTCACGTAGTTCTAGGT 57.021 39.130 0.00 0.20 41.61 3.08
3478 4287 8.188799 TGAATAAGTCATTCACGTAGTTCTAGG 58.811 37.037 0.00 0.00 46.48 3.02
3490 4299 5.655090 TCCGTCTAGGTGAATAAGTCATTCA 59.345 40.000 0.00 0.00 43.86 2.57
3491 4300 6.145338 TCCGTCTAGGTGAATAAGTCATTC 57.855 41.667 0.00 0.00 40.27 2.67
3492 4301 5.069251 CCTCCGTCTAGGTGAATAAGTCATT 59.931 44.000 0.00 0.00 38.90 2.57
3493 4302 4.585162 CCTCCGTCTAGGTGAATAAGTCAT 59.415 45.833 0.00 0.00 38.90 3.06
3494 4303 3.952323 CCTCCGTCTAGGTGAATAAGTCA 59.048 47.826 0.00 0.00 41.99 3.41
3495 4304 4.571372 CCTCCGTCTAGGTGAATAAGTC 57.429 50.000 0.00 0.00 41.99 3.01
3505 4314 7.067981 ACATTAAAACTACTACCTCCGTCTAGG 59.932 40.741 0.00 0.00 42.82 3.02
3506 4315 7.994194 ACATTAAAACTACTACCTCCGTCTAG 58.006 38.462 0.00 0.00 0.00 2.43
3507 4316 7.944729 ACATTAAAACTACTACCTCCGTCTA 57.055 36.000 0.00 0.00 0.00 2.59
3508 4317 6.847421 ACATTAAAACTACTACCTCCGTCT 57.153 37.500 0.00 0.00 0.00 4.18
3509 4318 7.599998 TGAAACATTAAAACTACTACCTCCGTC 59.400 37.037 0.00 0.00 0.00 4.79
3510 4319 7.444299 TGAAACATTAAAACTACTACCTCCGT 58.556 34.615 0.00 0.00 0.00 4.69
3511 4320 7.894376 TGAAACATTAAAACTACTACCTCCG 57.106 36.000 0.00 0.00 0.00 4.63
3530 4339 5.988561 TCCATTAGCCACATTGTTTTGAAAC 59.011 36.000 0.00 0.00 39.33 2.78
3535 4344 4.776837 TGGATCCATTAGCCACATTGTTTT 59.223 37.500 11.44 0.00 39.26 2.43
3564 4373 2.641321 TCTCAATATCAGGCCTCCATGG 59.359 50.000 0.00 4.97 39.35 3.66
3565 4374 4.362470 TTCTCAATATCAGGCCTCCATG 57.638 45.455 0.00 0.00 0.00 3.66
3582 4391 8.734386 ACAGAGACATTGTTTGGATAATTTCTC 58.266 33.333 0.00 0.00 38.99 2.87
3633 4454 3.733190 ATTATTGCCGCGTGCGTGC 62.733 57.895 13.70 15.61 45.60 5.34
3636 4831 3.018428 GCATTATTGCCGCGTGCG 61.018 61.111 4.92 7.38 45.60 5.34
3676 4871 3.589951 ACGTTAGGTGAGGGCTAGATA 57.410 47.619 0.00 0.00 0.00 1.98
3677 4872 2.431057 CAACGTTAGGTGAGGGCTAGAT 59.569 50.000 0.00 0.00 37.19 1.98
3678 4873 1.822990 CAACGTTAGGTGAGGGCTAGA 59.177 52.381 0.00 0.00 37.19 2.43
3679 4874 1.739371 GCAACGTTAGGTGAGGGCTAG 60.739 57.143 0.00 0.00 37.19 3.42
3681 4876 1.003718 GCAACGTTAGGTGAGGGCT 60.004 57.895 0.00 0.00 37.19 5.19
3682 4877 0.887387 TTGCAACGTTAGGTGAGGGC 60.887 55.000 0.00 0.00 37.19 5.19
3683 4878 1.156736 CTTGCAACGTTAGGTGAGGG 58.843 55.000 0.00 0.00 37.19 4.30
3728 4923 0.951558 AAACTTGGATGTCACCACGC 59.048 50.000 0.00 0.00 39.85 5.34
3730 4925 2.031157 CGGAAAACTTGGATGTCACCAC 60.031 50.000 0.00 0.00 39.85 4.16
3731 4926 2.158740 TCGGAAAACTTGGATGTCACCA 60.159 45.455 0.00 0.00 38.24 4.17
3739 4934 2.812011 GCTAGCTTTCGGAAAACTTGGA 59.188 45.455 11.26 0.00 0.00 3.53
3749 4944 3.938963 TGTTTATGGAAGCTAGCTTTCGG 59.061 43.478 29.84 0.00 36.26 4.30
3801 5000 2.880268 TCAGTTCCAGCATGTCAACTTG 59.120 45.455 0.00 0.00 35.74 3.16
3830 5043 1.745087 ACGCATGGAATGGATGTTGTC 59.255 47.619 0.00 0.00 46.86 3.18
3838 5051 6.748132 AGGAAAAATTATACGCATGGAATGG 58.252 36.000 0.00 0.00 46.86 3.16
3842 5055 8.356657 CCATTTAGGAAAAATTATACGCATGGA 58.643 33.333 0.00 0.00 41.22 3.41
3843 5056 7.116233 GCCATTTAGGAAAAATTATACGCATGG 59.884 37.037 0.00 0.00 41.22 3.66
3848 5073 7.284919 AGGGCCATTTAGGAAAAATTATACG 57.715 36.000 6.18 0.00 41.22 3.06
3858 5083 4.349365 CTTGGTTAAGGGCCATTTAGGAA 58.651 43.478 8.49 0.00 41.22 3.36
3873 5098 5.068987 GCATTGATGGGATTTAGCTTGGTTA 59.931 40.000 0.00 0.00 0.00 2.85
3874 5099 4.141869 GCATTGATGGGATTTAGCTTGGTT 60.142 41.667 0.00 0.00 0.00 3.67
3876 5101 3.385433 TGCATTGATGGGATTTAGCTTGG 59.615 43.478 0.00 0.00 0.00 3.61
3877 5102 4.659111 TGCATTGATGGGATTTAGCTTG 57.341 40.909 0.00 0.00 0.00 4.01
3879 5104 4.039973 CCAATGCATTGATGGGATTTAGCT 59.960 41.667 35.47 0.00 40.14 3.32
3880 5105 4.312443 CCAATGCATTGATGGGATTTAGC 58.688 43.478 35.47 0.00 40.14 3.09
3881 5106 4.039973 AGCCAATGCATTGATGGGATTTAG 59.960 41.667 35.47 18.04 40.14 1.85
3883 5108 2.775384 AGCCAATGCATTGATGGGATTT 59.225 40.909 35.47 12.03 40.14 2.17
3885 5110 2.097110 AGCCAATGCATTGATGGGAT 57.903 45.000 35.47 18.38 40.14 3.85
3886 5111 1.868713 AAGCCAATGCATTGATGGGA 58.131 45.000 35.47 0.00 40.14 4.37
3888 5113 4.202274 TGGAATAAGCCAATGCATTGATGG 60.202 41.667 35.47 23.58 40.14 3.51
3889 5114 4.951254 TGGAATAAGCCAATGCATTGATG 58.049 39.130 35.47 22.59 40.14 3.07
3890 5115 5.617528 TTGGAATAAGCCAATGCATTGAT 57.382 34.783 35.47 23.67 42.75 2.57
3892 5117 4.573201 CCTTTGGAATAAGCCAATGCATTG 59.427 41.667 28.91 28.91 46.59 2.82
3893 5118 4.470664 TCCTTTGGAATAAGCCAATGCATT 59.529 37.500 5.99 5.99 46.59 3.56
3894 5119 4.032310 TCCTTTGGAATAAGCCAATGCAT 58.968 39.130 0.00 0.00 46.59 3.96
3895 5120 3.195396 GTCCTTTGGAATAAGCCAATGCA 59.805 43.478 0.00 0.00 46.59 3.96
3897 5122 5.665916 AAGTCCTTTGGAATAAGCCAATG 57.334 39.130 0.00 0.00 46.59 2.82
3898 5123 5.893824 CCTAAGTCCTTTGGAATAAGCCAAT 59.106 40.000 1.83 0.00 46.59 3.16
3899 5124 5.261216 CCTAAGTCCTTTGGAATAAGCCAA 58.739 41.667 1.83 0.00 45.77 4.52
3900 5125 4.855340 CCTAAGTCCTTTGGAATAAGCCA 58.145 43.478 1.83 0.00 37.61 4.75
3901 5126 3.632604 GCCTAAGTCCTTTGGAATAAGCC 59.367 47.826 11.04 0.00 37.61 4.35
3902 5127 4.270008 TGCCTAAGTCCTTTGGAATAAGC 58.730 43.478 11.04 0.00 37.61 3.09
3903 5128 7.410120 AATTGCCTAAGTCCTTTGGAATAAG 57.590 36.000 11.04 0.00 37.61 1.73
3904 5129 7.790782 AAATTGCCTAAGTCCTTTGGAATAA 57.209 32.000 11.04 4.06 37.61 1.40
3905 5130 7.610865 CAAAATTGCCTAAGTCCTTTGGAATA 58.389 34.615 11.04 0.00 37.61 1.75
3906 5131 6.466812 CAAAATTGCCTAAGTCCTTTGGAAT 58.533 36.000 11.04 5.84 37.61 3.01
3907 5132 5.852827 CAAAATTGCCTAAGTCCTTTGGAA 58.147 37.500 11.04 0.00 37.61 3.53
3908 5133 5.467035 CAAAATTGCCTAAGTCCTTTGGA 57.533 39.130 11.04 0.00 37.61 3.53
3955 5180 2.415090 GCAGGCTTATTTGAGCTGTGTG 60.415 50.000 0.00 0.00 42.32 3.82
3976 5201 3.420606 CAGCAGTGCAGTCCAGCG 61.421 66.667 19.20 0.00 37.31 5.18
3984 5209 4.306767 CACTATGCCAGCAGTGCA 57.693 55.556 19.20 0.00 43.97 4.57
3986 5211 0.675837 AGTGCACTATGCCAGCAGTG 60.676 55.000 20.16 7.46 44.23 3.66
4012 5237 4.404073 GTCAAGGTCAGTCTAGACATCCAT 59.596 45.833 24.44 12.88 40.29 3.41
4017 5242 4.100279 TGAGTCAAGGTCAGTCTAGACA 57.900 45.455 24.44 1.95 40.29 3.41
4044 5272 0.970427 TCTAGTCATGACAGCGGCCA 60.970 55.000 27.02 4.50 0.00 5.36
4046 5274 1.135139 TCTTCTAGTCATGACAGCGGC 59.865 52.381 27.02 0.00 0.00 6.53
4050 5278 5.895636 AGTCAGTCTTCTAGTCATGACAG 57.104 43.478 27.02 20.27 39.54 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.