Multiple sequence alignment - TraesCS4A01G322400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G322400 chr4A 100.000 5419 0 0 1 5419 610497978 610492560 0.000000e+00 10008.0
1 TraesCS4A01G322400 chr4A 98.233 566 10 0 4854 5419 577554604 577554039 0.000000e+00 990.0
2 TraesCS4A01G322400 chr5B 89.995 2129 111 47 206 2258 704867410 704869512 0.000000e+00 2658.0
3 TraesCS4A01G322400 chr5B 88.426 1391 107 33 3385 4756 704870426 704871781 0.000000e+00 1628.0
4 TraesCS4A01G322400 chr5B 94.708 926 40 7 2424 3342 704869505 704870428 0.000000e+00 1430.0
5 TraesCS4A01G322400 chr5B 96.753 154 5 0 6 159 704867248 704867401 1.940000e-64 257.0
6 TraesCS4A01G322400 chr5B 91.304 46 3 1 3340 3384 460658975 460658930 1.630000e-05 62.1
7 TraesCS4A01G322400 chr5D 90.541 1755 106 30 427 2140 558270462 558268727 0.000000e+00 2266.0
8 TraesCS4A01G322400 chr5D 94.394 999 39 8 2357 3342 558268498 558267504 0.000000e+00 1519.0
9 TraesCS4A01G322400 chr5D 91.308 1093 70 17 3642 4716 558267282 558266197 0.000000e+00 1469.0
10 TraesCS4A01G322400 chr5D 94.477 344 8 4 4856 5188 494518265 494517922 2.240000e-143 520.0
11 TraesCS4A01G322400 chr5D 89.643 280 26 2 4856 5133 90161073 90160795 2.400000e-93 353.0
12 TraesCS4A01G322400 chr5D 90.076 262 21 2 3386 3642 558267505 558267244 8.700000e-88 335.0
13 TraesCS4A01G322400 chr5D 92.121 165 8 3 2159 2322 558268658 558268498 1.520000e-55 228.0
14 TraesCS4A01G322400 chr5D 90.533 169 15 1 5251 5419 494517805 494517638 7.060000e-54 222.0
15 TraesCS4A01G322400 chr5D 92.199 141 11 0 211 351 558270601 558270461 3.310000e-47 200.0
16 TraesCS4A01G322400 chr5D 78.246 285 54 7 74 351 38057022 38057305 5.580000e-40 176.0
17 TraesCS4A01G322400 chr5D 93.023 43 3 0 3345 3387 535005825 535005867 4.530000e-06 63.9
18 TraesCS4A01G322400 chr7A 98.759 564 7 0 4854 5417 14500760 14500197 0.000000e+00 1003.0
19 TraesCS4A01G322400 chr7A 97.368 38 1 0 3344 3381 74468241 74468278 1.260000e-06 65.8
20 TraesCS4A01G322400 chr3D 93.955 397 22 2 4859 5254 346544242 346543847 2.790000e-167 599.0
21 TraesCS4A01G322400 chr3D 85.530 387 27 15 4859 5219 613601357 613600974 1.420000e-100 377.0
22 TraesCS4A01G322400 chr3D 83.881 335 32 11 4854 5167 135981639 135981972 3.170000e-77 300.0
23 TraesCS4A01G322400 chr3D 92.398 171 13 0 5249 5419 346543672 346543502 1.510000e-60 244.0
24 TraesCS4A01G322400 chr3D 93.023 43 2 1 3340 3381 107672283 107672325 1.630000e-05 62.1
25 TraesCS4A01G322400 chr1A 92.519 401 16 2 4854 5254 533213745 533214131 3.660000e-156 562.0
26 TraesCS4A01G322400 chr1A 93.413 167 11 0 5251 5417 533214309 533214475 1.170000e-61 248.0
27 TraesCS4A01G322400 chr1B 91.094 393 15 9 4854 5246 588585320 588584948 1.040000e-141 514.0
28 TraesCS4A01G322400 chr1B 92.308 169 11 2 5251 5419 588584763 588584597 7.010000e-59 239.0
29 TraesCS4A01G322400 chr3B 85.067 375 44 8 4852 5216 478565193 478565565 6.630000e-99 372.0
30 TraesCS4A01G322400 chr6A 91.837 98 6 1 5124 5219 554106783 554106686 9.470000e-28 135.0
31 TraesCS4A01G322400 chrUn 95.000 40 0 2 3340 3378 79505412 79505450 1.630000e-05 62.1
32 TraesCS4A01G322400 chr7B 91.304 46 3 1 3340 3384 511462145 511462100 1.630000e-05 62.1
33 TraesCS4A01G322400 chr5A 93.023 43 2 1 3340 3381 227926477 227926519 1.630000e-05 62.1
34 TraesCS4A01G322400 chr3A 94.872 39 2 0 3343 3381 450015424 450015462 1.630000e-05 62.1
35 TraesCS4A01G322400 chr1D 97.222 36 0 1 3340 3374 205490342 205490307 5.860000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G322400 chr4A 610492560 610497978 5418 True 10008.000000 10008 100.000000 1 5419 1 chr4A.!!$R2 5418
1 TraesCS4A01G322400 chr4A 577554039 577554604 565 True 990.000000 990 98.233000 4854 5419 1 chr4A.!!$R1 565
2 TraesCS4A01G322400 chr5B 704867248 704871781 4533 False 1493.250000 2658 92.470500 6 4756 4 chr5B.!!$F1 4750
3 TraesCS4A01G322400 chr5D 558266197 558270601 4404 True 1002.833333 2266 91.773167 211 4716 6 chr5D.!!$R3 4505
4 TraesCS4A01G322400 chr5D 494517638 494518265 627 True 371.000000 520 92.505000 4856 5419 2 chr5D.!!$R2 563
5 TraesCS4A01G322400 chr7A 14500197 14500760 563 True 1003.000000 1003 98.759000 4854 5417 1 chr7A.!!$R1 563
6 TraesCS4A01G322400 chr3D 346543502 346544242 740 True 421.500000 599 93.176500 4859 5419 2 chr3D.!!$R2 560
7 TraesCS4A01G322400 chr1A 533213745 533214475 730 False 405.000000 562 92.966000 4854 5417 2 chr1A.!!$F1 563
8 TraesCS4A01G322400 chr1B 588584597 588585320 723 True 376.500000 514 91.701000 4854 5419 2 chr1B.!!$R1 565

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
196 197 0.036105 TGTACAGCCAGCAGTGATGG 60.036 55.0 23.33 23.33 42.66 3.51 F
1568 1633 0.806868 GACGTCAGTACCGTCCATCA 59.193 55.0 11.55 0.00 46.73 3.07 F
2587 2725 0.924090 CGCGGACAGCTTTATCTCAC 59.076 55.0 0.00 0.00 45.59 3.51 F
4037 4210 0.315251 GCTTTTTGAGGCTCACCCAC 59.685 55.0 18.55 2.24 36.11 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1644 1709 0.391661 GCGGAATCTTGGTCTGCAGA 60.392 55.000 13.74 13.74 45.14 4.26 R
3022 3167 1.336240 GCTTCAACATCACCTTGTGGC 60.336 52.381 0.00 0.00 36.63 5.01 R
4048 4221 1.000394 TCTTCTTTGGTGTCGCATCGA 60.000 47.619 0.00 0.00 0.00 3.59 R
4843 5029 0.445043 CGCAGCGTTAACCTAAACCC 59.555 55.000 6.65 0.00 0.00 4.11 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 2.545526 CGTGTTTCACAAGCAGAGACAT 59.454 45.455 1.00 0.00 33.47 3.06
26 27 3.605461 CGTGTTTCACAAGCAGAGACATG 60.605 47.826 0.00 0.00 33.47 3.21
50 51 1.631405 TTGCAGCCCAAGTAGCAATT 58.369 45.000 0.00 0.00 41.55 2.32
130 131 2.601763 GACTAAATGGACTAACGCCGTG 59.398 50.000 0.00 0.00 0.00 4.94
159 160 1.070471 CACAACGCGCATTTAAGGCC 61.070 55.000 5.73 0.00 0.00 5.19
161 162 1.070471 CAACGCGCATTTAAGGCCAC 61.070 55.000 5.73 0.00 0.00 5.01
162 163 2.277247 CGCGCATTTAAGGCCACG 60.277 61.111 8.75 0.00 0.00 4.94
163 164 2.579518 GCGCATTTAAGGCCACGC 60.580 61.111 5.01 4.54 39.49 5.34
164 165 2.874019 CGCATTTAAGGCCACGCA 59.126 55.556 5.01 0.00 0.00 5.24
165 166 1.433064 CGCATTTAAGGCCACGCAT 59.567 52.632 5.01 0.00 0.00 4.73
166 167 0.592247 CGCATTTAAGGCCACGCATC 60.592 55.000 5.01 0.00 0.00 3.91
167 168 0.455410 GCATTTAAGGCCACGCATCA 59.545 50.000 5.01 0.00 0.00 3.07
168 169 1.798813 GCATTTAAGGCCACGCATCAC 60.799 52.381 5.01 0.00 0.00 3.06
169 170 1.745087 CATTTAAGGCCACGCATCACT 59.255 47.619 5.01 0.00 0.00 3.41
170 171 1.164411 TTTAAGGCCACGCATCACTG 58.836 50.000 5.01 0.00 0.00 3.66
172 173 0.541392 TAAGGCCACGCATCACTGAT 59.459 50.000 5.01 0.00 0.00 2.90
173 174 0.541392 AAGGCCACGCATCACTGATA 59.459 50.000 5.01 0.00 0.00 2.15
174 175 0.541392 AGGCCACGCATCACTGATAA 59.459 50.000 5.01 0.00 0.00 1.75
175 176 0.940126 GGCCACGCATCACTGATAAG 59.060 55.000 0.00 0.00 0.00 1.73
176 177 0.305922 GCCACGCATCACTGATAAGC 59.694 55.000 0.00 0.00 0.00 3.09
177 178 1.945387 CCACGCATCACTGATAAGCT 58.055 50.000 0.00 0.00 0.00 3.74
178 179 1.596260 CCACGCATCACTGATAAGCTG 59.404 52.381 0.00 0.00 0.00 4.24
179 180 2.274437 CACGCATCACTGATAAGCTGT 58.726 47.619 0.00 0.00 0.00 4.40
180 181 3.447742 CACGCATCACTGATAAGCTGTA 58.552 45.455 0.00 0.00 0.00 2.74
181 182 3.243877 CACGCATCACTGATAAGCTGTAC 59.756 47.826 0.00 0.00 0.00 2.90
182 183 3.119137 ACGCATCACTGATAAGCTGTACA 60.119 43.478 0.00 0.00 0.00 2.90
183 184 3.488678 CGCATCACTGATAAGCTGTACAG 59.511 47.826 18.93 18.93 36.58 2.74
194 195 3.849002 CTGTACAGCCAGCAGTGAT 57.151 52.632 10.54 0.00 0.00 3.06
195 196 1.366679 CTGTACAGCCAGCAGTGATG 58.633 55.000 10.54 0.08 0.00 3.07
196 197 0.036105 TGTACAGCCAGCAGTGATGG 60.036 55.000 23.33 23.33 42.66 3.51
300 306 1.676678 GGACGGTGAGCAGGCAGATA 61.677 60.000 0.00 0.00 0.00 1.98
402 408 1.070821 CGCACTGCAAATTCGAGAGA 58.929 50.000 1.11 0.00 39.20 3.10
403 409 1.060266 CGCACTGCAAATTCGAGAGAG 59.940 52.381 1.11 0.00 43.69 3.20
413 419 4.999751 AATTCGAGAGAGAACAAACAGC 57.000 40.909 0.00 0.00 43.69 4.40
654 674 2.122189 CCATCCCTCCCTCCCCTC 60.122 72.222 0.00 0.00 0.00 4.30
655 675 2.525381 CATCCCTCCCTCCCCTCG 60.525 72.222 0.00 0.00 0.00 4.63
656 676 4.565850 ATCCCTCCCTCCCCTCGC 62.566 72.222 0.00 0.00 0.00 5.03
682 702 2.185608 GCGCTTCCTCCCTCACTC 59.814 66.667 0.00 0.00 0.00 3.51
683 703 2.896443 CGCTTCCTCCCTCACTCC 59.104 66.667 0.00 0.00 0.00 3.85
684 704 2.726351 CGCTTCCTCCCTCACTCCC 61.726 68.421 0.00 0.00 0.00 4.30
685 705 2.371259 GCTTCCTCCCTCACTCCCC 61.371 68.421 0.00 0.00 0.00 4.81
686 706 1.081092 CTTCCTCCCTCACTCCCCA 59.919 63.158 0.00 0.00 0.00 4.96
815 843 3.083997 GGGCCAGGGACGATCTGT 61.084 66.667 4.39 0.00 0.00 3.41
822 850 3.474806 GGACGATCTGTGCCGTTG 58.525 61.111 0.00 0.00 39.30 4.10
826 854 1.374125 CGATCTGTGCCGTTGGTGA 60.374 57.895 0.00 0.00 0.00 4.02
839 867 1.884075 TTGGTGACAGATCGGACGGG 61.884 60.000 0.00 0.00 44.54 5.28
885 913 1.468565 CGCACGTCTATTTTCGGAGGA 60.469 52.381 0.00 0.00 0.00 3.71
886 914 2.798499 CGCACGTCTATTTTCGGAGGAT 60.798 50.000 0.00 0.00 0.00 3.24
887 915 2.540101 GCACGTCTATTTTCGGAGGATG 59.460 50.000 0.00 0.00 0.00 3.51
888 916 3.123804 CACGTCTATTTTCGGAGGATGG 58.876 50.000 0.00 0.00 0.00 3.51
890 918 2.102588 CGTCTATTTTCGGAGGATGGGT 59.897 50.000 0.00 0.00 0.00 4.51
892 920 2.438021 TCTATTTTCGGAGGATGGGTGG 59.562 50.000 0.00 0.00 0.00 4.61
894 922 1.137594 TTTTCGGAGGATGGGTGGGT 61.138 55.000 0.00 0.00 0.00 4.51
1080 1112 4.367023 TTCTCCGCCGACAACCCG 62.367 66.667 0.00 0.00 0.00 5.28
1236 1298 2.122189 GAGGAGGATGGGGAGGGG 60.122 72.222 0.00 0.00 0.00 4.79
1431 1496 2.507324 GACGACGAGGGCAAGCTC 60.507 66.667 0.00 0.00 0.00 4.09
1435 1500 3.378399 GACGAGGGCAAGCTCCTCC 62.378 68.421 17.97 3.17 46.01 4.30
1568 1633 0.806868 GACGTCAGTACCGTCCATCA 59.193 55.000 11.55 0.00 46.73 3.07
1635 1700 4.497006 GGTGTGCTAATCAATCATCTGTGC 60.497 45.833 0.00 0.00 0.00 4.57
1644 1709 1.527034 ATCATCTGTGCGTGTGCTTT 58.473 45.000 0.00 0.00 43.34 3.51
1699 1764 4.095334 TCATCAAAGGCAAGATCAATGACG 59.905 41.667 0.00 0.00 0.00 4.35
1700 1765 2.162208 TCAAAGGCAAGATCAATGACGC 59.838 45.455 0.00 0.00 0.00 5.19
1769 1844 3.728718 GCATTGTTCGGGTTATTATTGCG 59.271 43.478 0.00 0.00 0.00 4.85
1778 1853 4.034742 CGGGTTATTATTGCGTAACAAGCT 59.965 41.667 0.00 0.00 42.87 3.74
1792 1867 7.225734 TGCGTAACAAGCTGAATTTATGCTATA 59.774 33.333 16.13 1.74 37.35 1.31
1801 1876 9.664332 AGCTGAATTTATGCTATACTTGGATAG 57.336 33.333 0.00 0.00 35.05 2.08
1848 1927 4.712476 TGTGCTGGTTGCCATAAAATTTT 58.288 34.783 8.75 8.75 42.00 1.82
1881 1960 5.401531 TCTTAACGTAAGAAGCACCTGAT 57.598 39.130 0.00 0.00 41.53 2.90
1900 1979 7.701078 CACCTGATTGCAATTAGAAATTCAGAG 59.299 37.037 27.68 16.53 29.16 3.35
1903 1982 7.255569 TGATTGCAATTAGAAATTCAGAGCTG 58.744 34.615 14.33 0.00 0.00 4.24
1925 2004 1.271597 CCCTGTTGTTAGAGCTTGGCT 60.272 52.381 0.00 0.00 43.88 4.75
1939 2018 2.095516 GCTTGGCTTTTCTGTGCTACTC 60.096 50.000 0.00 0.00 0.00 2.59
1948 2027 1.901833 TCTGTGCTACTCCTGCAATGA 59.098 47.619 0.00 0.00 42.41 2.57
1963 2042 6.994496 TCCTGCAATGACTAATTATTCCTCTG 59.006 38.462 0.81 0.00 0.00 3.35
1965 2044 7.933577 CCTGCAATGACTAATTATTCCTCTGTA 59.066 37.037 0.81 0.00 0.00 2.74
1983 2062 4.020396 TCTGTACACGGTTAAATGGCCTTA 60.020 41.667 3.32 0.00 0.00 2.69
1987 2066 6.883217 TGTACACGGTTAAATGGCCTTAATTA 59.117 34.615 3.32 0.00 0.00 1.40
1991 2070 8.407832 ACACGGTTAAATGGCCTTAATTATAAC 58.592 33.333 3.32 7.36 0.00 1.89
2122 2206 6.959701 GCTATTCAGCGTCACATAATTTTC 57.040 37.500 0.00 0.00 38.22 2.29
2134 2218 8.985694 CGTCACATAATTTTCGTGAAACTATTC 58.014 33.333 6.01 0.00 41.08 1.75
2136 2220 9.226606 TCACATAATTTTCGTGAAACTATTCCT 57.773 29.630 0.00 0.00 36.75 3.36
2160 2265 5.755409 AGTCCCTTGTTCACACATGTATA 57.245 39.130 0.00 0.00 31.06 1.47
2161 2266 5.488341 AGTCCCTTGTTCACACATGTATAC 58.512 41.667 0.00 0.00 31.06 1.47
2162 2267 5.248477 AGTCCCTTGTTCACACATGTATACT 59.752 40.000 0.00 0.00 31.06 2.12
2163 2268 5.938125 GTCCCTTGTTCACACATGTATACTT 59.062 40.000 0.00 0.00 31.06 2.24
2165 2270 6.653320 TCCCTTGTTCACACATGTATACTTTC 59.347 38.462 0.00 0.00 31.06 2.62
2168 2273 7.121168 CCTTGTTCACACATGTATACTTTCCAT 59.879 37.037 0.00 0.00 31.06 3.41
2171 2305 9.108284 TGTTCACACATGTATACTTTCCATATG 57.892 33.333 0.00 0.00 0.00 1.78
2203 2337 7.100458 AGCAAAGTAACTCATTGTTTTCACT 57.900 32.000 0.00 0.00 39.89 3.41
2232 2367 1.153369 TCCCTCTGCGCTGTTATGC 60.153 57.895 9.73 0.00 0.00 3.14
2265 2400 6.478344 GCTATATATGGTACTGAGCTGAATGC 59.522 42.308 0.00 0.00 43.29 3.56
2267 2402 2.099141 TGGTACTGAGCTGAATGCAC 57.901 50.000 0.00 0.00 45.94 4.57
2277 2412 6.482641 ACTGAGCTGAATGCACAAATATCTAG 59.517 38.462 0.00 0.00 45.94 2.43
2291 2426 7.009631 CACAAATATCTAGTAGCACAGTGACAC 59.990 40.741 4.15 0.00 0.00 3.67
2318 2453 3.350833 AGGCACATCCTTCACAGAATTC 58.649 45.455 0.00 0.00 44.75 2.17
2320 2455 3.084039 GCACATCCTTCACAGAATTCCA 58.916 45.455 0.65 0.00 0.00 3.53
2321 2456 3.698040 GCACATCCTTCACAGAATTCCAT 59.302 43.478 0.65 0.00 0.00 3.41
2323 2458 5.337009 GCACATCCTTCACAGAATTCCATTT 60.337 40.000 0.65 0.00 0.00 2.32
2324 2459 6.694447 CACATCCTTCACAGAATTCCATTTT 58.306 36.000 0.65 0.00 0.00 1.82
2325 2460 6.588756 CACATCCTTCACAGAATTCCATTTTG 59.411 38.462 0.65 0.00 0.00 2.44
2326 2461 5.726980 TCCTTCACAGAATTCCATTTTGG 57.273 39.130 0.65 0.00 39.43 3.28
2327 2462 5.147032 TCCTTCACAGAATTCCATTTTGGT 58.853 37.500 0.65 0.00 39.03 3.67
2328 2463 5.243730 TCCTTCACAGAATTCCATTTTGGTC 59.756 40.000 0.65 0.00 39.03 4.02
2329 2464 5.010922 CCTTCACAGAATTCCATTTTGGTCA 59.989 40.000 0.65 0.00 39.03 4.02
2330 2465 5.452078 TCACAGAATTCCATTTTGGTCAC 57.548 39.130 0.65 0.00 39.03 3.67
2331 2466 4.892345 TCACAGAATTCCATTTTGGTCACA 59.108 37.500 0.65 0.00 39.03 3.58
2332 2467 5.362143 TCACAGAATTCCATTTTGGTCACAA 59.638 36.000 0.65 0.00 39.03 3.33
2333 2468 5.693104 CACAGAATTCCATTTTGGTCACAAG 59.307 40.000 0.65 0.00 39.03 3.16
2334 2469 5.363580 ACAGAATTCCATTTTGGTCACAAGT 59.636 36.000 0.65 0.00 39.03 3.16
2335 2470 6.549364 ACAGAATTCCATTTTGGTCACAAGTA 59.451 34.615 0.65 0.00 39.03 2.24
2336 2471 6.863126 CAGAATTCCATTTTGGTCACAAGTAC 59.137 38.462 0.65 0.00 39.03 2.73
2337 2472 6.777580 AGAATTCCATTTTGGTCACAAGTACT 59.222 34.615 0.65 0.00 39.03 2.73
2338 2473 5.766150 TTCCATTTTGGTCACAAGTACTG 57.234 39.130 0.00 0.00 39.03 2.74
2339 2474 4.787551 TCCATTTTGGTCACAAGTACTGT 58.212 39.130 0.00 0.00 39.03 3.55
2340 2475 5.931294 TCCATTTTGGTCACAAGTACTGTA 58.069 37.500 0.00 0.00 39.03 2.74
2341 2476 6.539173 TCCATTTTGGTCACAAGTACTGTAT 58.461 36.000 0.00 0.00 39.03 2.29
2342 2477 7.001674 TCCATTTTGGTCACAAGTACTGTATT 58.998 34.615 0.00 0.00 39.03 1.89
2343 2478 7.040755 TCCATTTTGGTCACAAGTACTGTATTG 60.041 37.037 0.00 0.00 39.03 1.90
2344 2479 7.255451 CCATTTTGGTCACAAGTACTGTATTGT 60.255 37.037 0.00 0.00 37.97 2.71
2345 2480 8.779303 CATTTTGGTCACAAGTACTGTATTGTA 58.221 33.333 0.00 0.00 37.54 2.41
2346 2481 8.734218 TTTTGGTCACAAGTACTGTATTGTAA 57.266 30.769 0.00 0.96 37.54 2.41
2347 2482 7.956420 TTGGTCACAAGTACTGTATTGTAAG 57.044 36.000 0.00 5.44 37.54 2.34
2348 2483 6.460781 TGGTCACAAGTACTGTATTGTAAGG 58.539 40.000 0.00 4.98 37.54 2.69
2349 2484 5.873164 GGTCACAAGTACTGTATTGTAAGGG 59.127 44.000 0.00 4.75 37.54 3.95
2350 2485 6.461640 GTCACAAGTACTGTATTGTAAGGGT 58.538 40.000 0.00 0.00 37.54 4.34
2351 2486 6.932960 GTCACAAGTACTGTATTGTAAGGGTT 59.067 38.462 0.00 0.00 37.54 4.11
2352 2487 7.443272 GTCACAAGTACTGTATTGTAAGGGTTT 59.557 37.037 0.00 0.00 37.54 3.27
2353 2488 7.994334 TCACAAGTACTGTATTGTAAGGGTTTT 59.006 33.333 0.00 0.00 37.54 2.43
2354 2489 8.287503 CACAAGTACTGTATTGTAAGGGTTTTC 58.712 37.037 0.00 0.00 37.54 2.29
2355 2490 8.215736 ACAAGTACTGTATTGTAAGGGTTTTCT 58.784 33.333 0.00 0.00 37.85 2.52
2356 2491 9.063615 CAAGTACTGTATTGTAAGGGTTTTCTT 57.936 33.333 0.00 0.00 0.00 2.52
2358 2493 9.939802 AGTACTGTATTGTAAGGGTTTTCTTAG 57.060 33.333 0.00 0.00 30.76 2.18
2359 2494 7.683437 ACTGTATTGTAAGGGTTTTCTTAGC 57.317 36.000 0.00 0.00 30.76 3.09
2471 2607 5.049828 GGAATTGTTTAGCTGTTTTGTGCT 58.950 37.500 0.00 0.00 42.67 4.40
2492 2628 2.073816 ACAAACGTACTGTATGCCTGC 58.926 47.619 6.94 0.00 0.00 4.85
2512 2648 3.436704 TGCTGCTTTTCCAACTCTTATCG 59.563 43.478 0.00 0.00 0.00 2.92
2587 2725 0.924090 CGCGGACAGCTTTATCTCAC 59.076 55.000 0.00 0.00 45.59 3.51
2640 2778 9.891828 TTACAAGTTACAGCTGATAACAAATTG 57.108 29.630 26.59 23.83 35.39 2.32
2645 2783 4.726416 ACAGCTGATAACAAATTGCTTCG 58.274 39.130 23.35 0.00 0.00 3.79
2679 2817 7.659652 AGTACATCTTAAGAACTTTCTGTGC 57.340 36.000 9.71 11.28 37.65 4.57
2686 2824 6.823689 TCTTAAGAACTTTCTGTGCCATATCC 59.176 38.462 1.68 0.00 37.65 2.59
2695 2833 5.939764 TCTGTGCCATATCCCATATCTAC 57.060 43.478 0.00 0.00 0.00 2.59
2701 2839 8.924303 TGTGCCATATCCCATATCTACTAATAC 58.076 37.037 0.00 0.00 0.00 1.89
2801 2942 2.930109 AGCTAAGAGGAGAAGGACCA 57.070 50.000 0.00 0.00 0.00 4.02
2936 3081 2.715046 CAGTAGCACCACAATGTCCAT 58.285 47.619 0.00 0.00 0.00 3.41
3022 3167 3.636231 TTCTGCGGTCCCAGTGGG 61.636 66.667 23.57 23.57 46.11 4.61
3049 3194 4.737855 AGGTGATGTTGAAGCTATACGT 57.262 40.909 0.00 0.00 0.00 3.57
3200 3354 4.279671 TCAAAATTTGTCGGGTGCATAAGT 59.720 37.500 5.56 0.00 0.00 2.24
3208 3362 5.736813 TGTCGGGTGCATAAGTAGTTTATT 58.263 37.500 0.00 0.00 29.37 1.40
3211 3365 7.278424 TGTCGGGTGCATAAGTAGTTTATTAAC 59.722 37.037 0.00 0.00 29.37 2.01
3344 3498 5.172205 CAAGACTTCCTTGCTAACTACTCC 58.828 45.833 0.00 0.00 44.90 3.85
3345 3499 4.417437 AGACTTCCTTGCTAACTACTCCA 58.583 43.478 0.00 0.00 0.00 3.86
3346 3500 5.026790 AGACTTCCTTGCTAACTACTCCAT 58.973 41.667 0.00 0.00 0.00 3.41
3347 3501 5.485708 AGACTTCCTTGCTAACTACTCCATT 59.514 40.000 0.00 0.00 0.00 3.16
3348 3502 6.013293 AGACTTCCTTGCTAACTACTCCATTT 60.013 38.462 0.00 0.00 0.00 2.32
3349 3503 6.174049 ACTTCCTTGCTAACTACTCCATTTC 58.826 40.000 0.00 0.00 0.00 2.17
3350 3504 6.013293 ACTTCCTTGCTAACTACTCCATTTCT 60.013 38.462 0.00 0.00 0.00 2.52
3351 3505 7.180408 ACTTCCTTGCTAACTACTCCATTTCTA 59.820 37.037 0.00 0.00 0.00 2.10
3352 3506 7.676683 TCCTTGCTAACTACTCCATTTCTAT 57.323 36.000 0.00 0.00 0.00 1.98
3353 3507 7.727181 TCCTTGCTAACTACTCCATTTCTATC 58.273 38.462 0.00 0.00 0.00 2.08
3354 3508 6.931840 CCTTGCTAACTACTCCATTTCTATCC 59.068 42.308 0.00 0.00 0.00 2.59
3355 3509 7.419057 CCTTGCTAACTACTCCATTTCTATCCA 60.419 40.741 0.00 0.00 0.00 3.41
3356 3510 7.618019 TGCTAACTACTCCATTTCTATCCAT 57.382 36.000 0.00 0.00 0.00 3.41
3357 3511 8.034313 TGCTAACTACTCCATTTCTATCCATT 57.966 34.615 0.00 0.00 0.00 3.16
3358 3512 8.494433 TGCTAACTACTCCATTTCTATCCATTT 58.506 33.333 0.00 0.00 0.00 2.32
3359 3513 8.994170 GCTAACTACTCCATTTCTATCCATTTC 58.006 37.037 0.00 0.00 0.00 2.17
3361 3515 8.970859 AACTACTCCATTTCTATCCATTTCTG 57.029 34.615 0.00 0.00 0.00 3.02
3362 3516 6.995091 ACTACTCCATTTCTATCCATTTCTGC 59.005 38.462 0.00 0.00 0.00 4.26
3363 3517 4.818546 ACTCCATTTCTATCCATTTCTGCG 59.181 41.667 0.00 0.00 0.00 5.18
3364 3518 5.034852 TCCATTTCTATCCATTTCTGCGA 57.965 39.130 0.00 0.00 0.00 5.10
3365 3519 4.816385 TCCATTTCTATCCATTTCTGCGAC 59.184 41.667 0.00 0.00 0.00 5.19
3366 3520 4.576053 CCATTTCTATCCATTTCTGCGACA 59.424 41.667 0.00 0.00 0.00 4.35
3367 3521 5.066375 CCATTTCTATCCATTTCTGCGACAA 59.934 40.000 0.00 0.00 0.00 3.18
3368 3522 5.801350 TTTCTATCCATTTCTGCGACAAG 57.199 39.130 0.00 0.00 0.00 3.16
3369 3523 4.471904 TCTATCCATTTCTGCGACAAGT 57.528 40.909 0.00 0.00 0.00 3.16
3370 3524 5.592104 TCTATCCATTTCTGCGACAAGTA 57.408 39.130 0.00 0.00 0.00 2.24
3371 3525 5.972935 TCTATCCATTTCTGCGACAAGTAA 58.027 37.500 0.00 0.00 0.00 2.24
3372 3526 6.582636 TCTATCCATTTCTGCGACAAGTAAT 58.417 36.000 0.00 0.00 0.00 1.89
3373 3527 7.047891 TCTATCCATTTCTGCGACAAGTAATT 58.952 34.615 0.00 0.00 0.00 1.40
3374 3528 8.201464 TCTATCCATTTCTGCGACAAGTAATTA 58.799 33.333 0.00 0.00 0.00 1.40
3375 3529 7.807977 ATCCATTTCTGCGACAAGTAATTAT 57.192 32.000 0.00 0.00 0.00 1.28
3376 3530 7.015226 TCCATTTCTGCGACAAGTAATTATG 57.985 36.000 0.00 0.00 0.00 1.90
3377 3531 6.038161 TCCATTTCTGCGACAAGTAATTATGG 59.962 38.462 0.00 0.00 0.00 2.74
3378 3532 6.038161 CCATTTCTGCGACAAGTAATTATGGA 59.962 38.462 0.00 0.00 0.00 3.41
3379 3533 7.255242 CCATTTCTGCGACAAGTAATTATGGAT 60.255 37.037 0.00 0.00 0.00 3.41
3380 3534 6.603237 TTCTGCGACAAGTAATTATGGATG 57.397 37.500 0.00 0.00 0.00 3.51
3381 3535 5.670485 TCTGCGACAAGTAATTATGGATGT 58.330 37.500 0.00 0.00 0.00 3.06
3382 3536 6.811954 TCTGCGACAAGTAATTATGGATGTA 58.188 36.000 0.00 0.00 0.00 2.29
3383 3537 6.923508 TCTGCGACAAGTAATTATGGATGTAG 59.076 38.462 0.00 0.00 0.00 2.74
3437 3593 5.774498 AGCAGGCTGTAAATATTTAAGCC 57.226 39.130 30.19 30.19 41.69 4.35
3453 3609 7.759489 ATTTAAGCCATTTGTAGACTCACAA 57.241 32.000 0.00 0.00 36.65 3.33
3462 3618 5.818678 TTGTAGACTCACAACCCAATACT 57.181 39.130 0.00 0.00 33.55 2.12
3476 3632 3.181493 CCCAATACTTGCTGAACTGCATC 60.181 47.826 7.15 0.00 42.96 3.91
3514 3670 8.730680 AGTTCATTTATGGTGTCTTACATTGTC 58.269 33.333 0.00 0.00 0.00 3.18
3546 3702 8.306313 TGATTATCTTTAACCTACTGAGCAGA 57.694 34.615 4.21 0.00 0.00 4.26
3562 3718 4.094887 TGAGCAGAATGGAAAAACGATAGC 59.905 41.667 0.00 0.00 36.19 2.97
3594 3751 7.404671 AAGTGTTGTCCAGAAAAGTTTATGT 57.595 32.000 0.00 0.00 0.00 2.29
3597 3754 7.122055 AGTGTTGTCCAGAAAAGTTTATGTTGA 59.878 33.333 0.00 0.00 0.00 3.18
3639 3796 8.943909 AATACTTACAGTACTAAACTCCATGC 57.056 34.615 0.00 0.00 35.76 4.06
3640 3797 5.731591 ACTTACAGTACTAAACTCCATGCC 58.268 41.667 0.00 0.00 35.76 4.40
3660 3817 9.391006 CCATGCCTTCAGTTATAAACTACTTAA 57.609 33.333 0.00 0.00 40.46 1.85
3682 3839 2.463752 AGTAGTAAACTCCATGCCGGA 58.536 47.619 5.05 0.00 43.61 5.14
3686 3843 4.073293 AGTAAACTCCATGCCGGATAAG 57.927 45.455 5.05 0.00 45.19 1.73
3690 3847 4.706842 AACTCCATGCCGGATAAGTATT 57.293 40.909 5.05 0.00 45.19 1.89
3817 3981 6.147821 GCACTTGTGACATTGTGACTTACTAT 59.852 38.462 18.72 0.00 32.72 2.12
3888 4056 4.577693 TGGCTATCATCTTGTGAAATGCTC 59.422 41.667 0.00 0.00 40.97 4.26
3940 4112 6.041409 ACATTGTTATCTCGTCAGGATCTCAT 59.959 38.462 0.00 0.00 0.00 2.90
3941 4113 7.231519 ACATTGTTATCTCGTCAGGATCTCATA 59.768 37.037 0.00 0.00 0.00 2.15
3942 4114 7.582667 TTGTTATCTCGTCAGGATCTCATAA 57.417 36.000 0.00 0.00 0.00 1.90
4037 4210 0.315251 GCTTTTTGAGGCTCACCCAC 59.685 55.000 18.55 2.24 36.11 4.61
4043 4216 1.896660 GAGGCTCACCCACGCAAAA 60.897 57.895 10.25 0.00 36.11 2.44
4047 4220 1.732917 CTCACCCACGCAAAAGCAA 59.267 52.632 0.00 0.00 0.00 3.91
4048 4221 0.314935 CTCACCCACGCAAAAGCAAT 59.685 50.000 0.00 0.00 0.00 3.56
4052 4225 0.171007 CCCACGCAAAAGCAATCGAT 59.829 50.000 0.00 0.00 0.00 3.59
4061 4234 3.485110 GCAATCGATGCGACACCA 58.515 55.556 0.00 0.00 46.87 4.17
4068 4241 1.000394 TCGATGCGACACCAAAGAAGA 60.000 47.619 0.00 0.00 0.00 2.87
4107 4280 0.593128 CGGCACTCCAAAACAGAAGG 59.407 55.000 0.00 0.00 0.00 3.46
4136 4309 4.335647 CCAGGCAGCAAGTCCCGT 62.336 66.667 0.00 0.00 0.00 5.28
4293 4466 1.529152 TAGCGAGACGGGACAAAGCA 61.529 55.000 0.00 0.00 0.00 3.91
4295 4468 1.860078 CGAGACGGGACAAAGCAAC 59.140 57.895 0.00 0.00 0.00 4.17
4420 4593 1.205893 CAAGAAGGCGAGGAAGTAGCT 59.794 52.381 0.00 0.00 0.00 3.32
4421 4594 0.820871 AGAAGGCGAGGAAGTAGCTG 59.179 55.000 0.00 0.00 0.00 4.24
4422 4595 0.533032 GAAGGCGAGGAAGTAGCTGT 59.467 55.000 0.00 0.00 0.00 4.40
4436 4615 1.576577 AGCTGTCCTGTGATGGATCA 58.423 50.000 0.00 0.00 38.52 2.92
4440 4619 3.474600 CTGTCCTGTGATGGATCATTCC 58.525 50.000 0.00 0.00 42.94 3.01
4446 4625 2.505407 TGTGATGGATCATTCCCTTCGT 59.495 45.455 0.00 0.00 41.83 3.85
4448 4627 4.163268 TGTGATGGATCATTCCCTTCGTTA 59.837 41.667 0.00 0.00 41.83 3.18
4463 4642 6.040166 TCCCTTCGTTATGTAATAGGAGTGTC 59.960 42.308 0.00 0.00 0.00 3.67
4464 4643 6.183360 CCCTTCGTTATGTAATAGGAGTGTCA 60.183 42.308 0.00 0.00 0.00 3.58
4466 4645 7.762615 CCTTCGTTATGTAATAGGAGTGTCAAA 59.237 37.037 0.00 0.00 0.00 2.69
4513 4699 1.160137 CTTTGGTTCAGCGAGGGAAG 58.840 55.000 0.00 0.00 0.00 3.46
4548 4734 4.888038 TGATGTTGCTGATGTAATGCTC 57.112 40.909 0.00 0.00 0.00 4.26
4587 4773 2.875933 TCGTTTGGTACTTGCCTTTGAG 59.124 45.455 0.00 0.00 0.00 3.02
4668 4854 3.377798 CACCATTTTTGCCTTGCTTGTTT 59.622 39.130 0.00 0.00 0.00 2.83
4678 4864 2.555325 CCTTGCTTGTTTCTCATGCTGA 59.445 45.455 7.11 0.00 44.28 4.26
4680 4866 4.321750 CCTTGCTTGTTTCTCATGCTGATT 60.322 41.667 7.11 0.00 44.28 2.57
4689 4875 4.432980 TCTCATGCTGATTCCATGTCAT 57.567 40.909 0.00 0.00 40.63 3.06
4712 4898 7.819415 TCATTCAAGTGATGGAACTACAAGTAG 59.181 37.037 5.72 5.72 39.04 2.57
4723 4909 5.106673 GGAACTACAAGTAGCATGTTTGGTC 60.107 44.000 7.14 0.00 36.66 4.02
4724 4910 4.968259 ACTACAAGTAGCATGTTTGGTCA 58.032 39.130 7.14 0.00 36.66 4.02
4725 4911 5.373222 ACTACAAGTAGCATGTTTGGTCAA 58.627 37.500 7.14 0.00 36.66 3.18
4729 4915 6.042143 ACAAGTAGCATGTTTGGTCAAAAAG 58.958 36.000 0.00 0.00 34.79 2.27
4732 4918 6.872920 AGTAGCATGTTTGGTCAAAAAGAAA 58.127 32.000 0.00 0.00 34.79 2.52
4734 4920 7.986889 AGTAGCATGTTTGGTCAAAAAGAAAAT 59.013 29.630 0.00 0.00 34.79 1.82
4756 4942 8.664669 AAATTCATTGGTCTTGGTAAATACCT 57.335 30.769 10.77 0.00 46.58 3.08
4757 4943 8.664669 AATTCATTGGTCTTGGTAAATACCTT 57.335 30.769 10.77 0.00 46.58 3.50
4758 4944 8.664669 ATTCATTGGTCTTGGTAAATACCTTT 57.335 30.769 10.77 0.00 46.58 3.11
4759 4945 8.485578 TTCATTGGTCTTGGTAAATACCTTTT 57.514 30.769 10.77 0.00 46.58 2.27
4760 4946 7.891561 TCATTGGTCTTGGTAAATACCTTTTG 58.108 34.615 10.77 0.00 46.58 2.44
4761 4947 6.658188 TTGGTCTTGGTAAATACCTTTTGG 57.342 37.500 10.77 0.00 46.58 3.28
4762 4948 4.525100 TGGTCTTGGTAAATACCTTTTGGC 59.475 41.667 10.77 0.88 46.58 4.52
4763 4949 4.525100 GGTCTTGGTAAATACCTTTTGGCA 59.475 41.667 10.77 0.00 46.58 4.92
4764 4950 5.186992 GGTCTTGGTAAATACCTTTTGGCAT 59.813 40.000 10.77 0.00 46.58 4.40
4765 4951 6.099341 GTCTTGGTAAATACCTTTTGGCATG 58.901 40.000 10.77 0.00 46.58 4.06
4766 4952 5.186797 TCTTGGTAAATACCTTTTGGCATGG 59.813 40.000 10.77 0.00 46.58 3.66
4767 4953 4.421131 TGGTAAATACCTTTTGGCATGGT 58.579 39.130 10.77 11.16 46.58 3.55
4768 4954 4.841246 TGGTAAATACCTTTTGGCATGGTT 59.159 37.500 10.77 0.00 46.58 3.67
4769 4955 5.308237 TGGTAAATACCTTTTGGCATGGTTT 59.692 36.000 10.77 5.29 46.58 3.27
4770 4956 6.183361 TGGTAAATACCTTTTGGCATGGTTTT 60.183 34.615 10.77 12.71 46.58 2.43
4771 4957 6.712998 GGTAAATACCTTTTGGCATGGTTTTT 59.287 34.615 18.71 18.71 45.59 1.94
4801 4987 3.401033 GGCTTTTGGCATGGTTTTAGT 57.599 42.857 0.00 0.00 45.26 2.24
4802 4988 3.738982 GGCTTTTGGCATGGTTTTAGTT 58.261 40.909 0.00 0.00 45.26 2.24
4803 4989 3.745975 GGCTTTTGGCATGGTTTTAGTTC 59.254 43.478 0.00 0.00 45.26 3.01
4804 4990 3.745975 GCTTTTGGCATGGTTTTAGTTCC 59.254 43.478 0.00 0.00 41.35 3.62
4805 4991 4.742138 GCTTTTGGCATGGTTTTAGTTCCA 60.742 41.667 0.00 0.00 41.35 3.53
4806 4992 5.359194 TTTTGGCATGGTTTTAGTTCCAA 57.641 34.783 0.00 0.00 37.27 3.53
4807 4993 5.559148 TTTGGCATGGTTTTAGTTCCAAT 57.441 34.783 0.00 0.00 37.27 3.16
4808 4994 4.533919 TGGCATGGTTTTAGTTCCAATG 57.466 40.909 0.00 0.00 37.27 2.82
4809 4995 3.260380 TGGCATGGTTTTAGTTCCAATGG 59.740 43.478 0.00 0.00 37.27 3.16
4810 4996 3.513515 GGCATGGTTTTAGTTCCAATGGA 59.486 43.478 0.00 0.00 37.27 3.41
4811 4997 4.020662 GGCATGGTTTTAGTTCCAATGGAA 60.021 41.667 11.23 11.23 39.66 3.53
4829 5015 5.261040 TGGAACAGAGGGATTTTGATTCT 57.739 39.130 0.00 0.00 0.00 2.40
4830 5016 5.256474 TGGAACAGAGGGATTTTGATTCTC 58.744 41.667 0.00 0.00 0.00 2.87
4831 5017 5.222109 TGGAACAGAGGGATTTTGATTCTCA 60.222 40.000 0.00 0.00 0.00 3.27
4832 5018 5.711976 GGAACAGAGGGATTTTGATTCTCAA 59.288 40.000 0.00 0.00 34.03 3.02
4833 5019 6.127786 GGAACAGAGGGATTTTGATTCTCAAG 60.128 42.308 0.00 0.00 37.70 3.02
4834 5020 4.704057 ACAGAGGGATTTTGATTCTCAAGC 59.296 41.667 0.00 0.00 37.70 4.01
4835 5021 4.948621 CAGAGGGATTTTGATTCTCAAGCT 59.051 41.667 0.00 0.00 37.70 3.74
4836 5022 5.066246 CAGAGGGATTTTGATTCTCAAGCTC 59.934 44.000 0.00 0.00 37.70 4.09
4837 5023 4.927049 AGGGATTTTGATTCTCAAGCTCA 58.073 39.130 0.00 0.00 37.70 4.26
4838 5024 5.327732 AGGGATTTTGATTCTCAAGCTCAA 58.672 37.500 0.00 0.00 37.70 3.02
4839 5025 5.776716 AGGGATTTTGATTCTCAAGCTCAAA 59.223 36.000 0.00 0.00 37.70 2.69
4840 5026 5.866092 GGGATTTTGATTCTCAAGCTCAAAC 59.134 40.000 0.00 0.00 38.30 2.93
4841 5027 6.449698 GGATTTTGATTCTCAAGCTCAAACA 58.550 36.000 0.00 0.00 38.30 2.83
4842 5028 7.095270 GGATTTTGATTCTCAAGCTCAAACAT 58.905 34.615 0.00 0.00 38.30 2.71
4843 5029 7.063074 GGATTTTGATTCTCAAGCTCAAACATG 59.937 37.037 0.00 0.00 38.30 3.21
4844 5030 5.381174 TTGATTCTCAAGCTCAAACATGG 57.619 39.130 0.00 0.00 31.83 3.66
4845 5031 3.760151 TGATTCTCAAGCTCAAACATGGG 59.240 43.478 0.00 0.00 0.00 4.00
4846 5032 2.957402 TCTCAAGCTCAAACATGGGT 57.043 45.000 0.00 0.00 0.00 4.51
4847 5033 3.228188 TCTCAAGCTCAAACATGGGTT 57.772 42.857 0.00 0.00 39.43 4.11
4848 5034 9.042477 TTGATTCTCAAGCTCAAACATGGGTTT 62.042 37.037 0.00 0.00 38.50 3.27
4849 5035 4.724399 TCTCAAGCTCAAACATGGGTTTA 58.276 39.130 0.00 0.00 45.18 2.01
4850 5036 4.761739 TCTCAAGCTCAAACATGGGTTTAG 59.238 41.667 0.00 0.00 45.18 1.85
4851 5037 3.826157 TCAAGCTCAAACATGGGTTTAGG 59.174 43.478 0.00 0.00 45.18 2.69
4852 5038 3.525800 AGCTCAAACATGGGTTTAGGT 57.474 42.857 0.00 0.00 45.18 3.08
4983 5169 3.753815 TGTTCACTGAATTGCCTCATGA 58.246 40.909 0.00 0.00 0.00 3.07
5188 5385 1.294659 CGGTCAGGAAGCTTCAGCAC 61.295 60.000 27.02 18.02 45.16 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 1.106285 CTACTTGGGCTGCAAATCCC 58.894 55.000 10.55 10.55 42.93 3.85
50 51 2.669910 TTGTGGGCGCGCAATGTA 60.670 55.556 34.42 12.87 0.00 2.29
130 131 2.351888 GCGTTGTGTCGTGTTGCC 60.352 61.111 0.00 0.00 0.00 4.52
145 146 2.277247 CGTGGCCTTAAATGCGCG 60.277 61.111 3.32 0.00 0.00 6.86
159 160 2.274437 ACAGCTTATCAGTGATGCGTG 58.726 47.619 16.15 12.59 0.00 5.34
161 162 3.447742 TGTACAGCTTATCAGTGATGCG 58.552 45.455 16.15 9.93 0.00 4.73
176 177 1.366679 CATCACTGCTGGCTGTACAG 58.633 55.000 18.93 18.93 41.41 2.74
177 178 0.036105 CCATCACTGCTGGCTGTACA 60.036 55.000 4.89 0.00 0.00 2.90
178 179 2.772739 CCATCACTGCTGGCTGTAC 58.227 57.895 4.89 0.00 0.00 2.90
184 185 0.963856 ACATGTGCCATCACTGCTGG 60.964 55.000 0.00 0.00 43.49 4.85
185 186 0.170339 CACATGTGCCATCACTGCTG 59.830 55.000 13.94 0.00 43.49 4.41
186 187 0.251033 ACACATGTGCCATCACTGCT 60.251 50.000 25.68 0.00 43.49 4.24
187 188 1.131126 GTACACATGTGCCATCACTGC 59.869 52.381 25.68 4.27 43.49 4.40
188 189 2.425539 TGTACACATGTGCCATCACTG 58.574 47.619 25.68 0.00 43.49 3.66
189 190 2.857186 TGTACACATGTGCCATCACT 57.143 45.000 25.68 6.93 43.49 3.41
190 191 3.825308 CTTTGTACACATGTGCCATCAC 58.175 45.455 25.68 15.09 43.40 3.06
191 192 2.228582 GCTTTGTACACATGTGCCATCA 59.771 45.455 25.68 15.54 0.00 3.07
192 193 2.228582 TGCTTTGTACACATGTGCCATC 59.771 45.455 25.68 13.28 0.00 3.51
193 194 2.237643 TGCTTTGTACACATGTGCCAT 58.762 42.857 25.68 9.21 0.00 4.40
194 195 1.685148 TGCTTTGTACACATGTGCCA 58.315 45.000 25.68 18.83 0.00 4.92
195 196 2.791383 TTGCTTTGTACACATGTGCC 57.209 45.000 25.68 16.44 0.00 5.01
219 220 1.612463 CCTCTGCTTGCTCTTGCTTTT 59.388 47.619 0.00 0.00 40.48 2.27
221 222 0.399454 TCCTCTGCTTGCTCTTGCTT 59.601 50.000 0.00 0.00 40.48 3.91
228 229 1.002379 CAGCCTTCCTCTGCTTGCT 60.002 57.895 0.00 0.00 35.12 3.91
402 408 0.107410 TGTCACCGGCTGTTTGTTCT 60.107 50.000 0.00 0.00 0.00 3.01
403 409 0.028902 GTGTCACCGGCTGTTTGTTC 59.971 55.000 0.00 0.00 0.00 3.18
639 645 4.565850 GCGAGGGGAGGGAGGGAT 62.566 72.222 0.00 0.00 0.00 3.85
815 843 1.374125 CGATCTGTCACCAACGGCA 60.374 57.895 0.00 0.00 33.94 5.69
822 850 2.348888 ACCCGTCCGATCTGTCACC 61.349 63.158 0.00 0.00 0.00 4.02
826 854 4.129737 CGCACCCGTCCGATCTGT 62.130 66.667 0.00 0.00 0.00 3.41
1080 1112 3.119096 GACTCCTTGCGGCGGAAC 61.119 66.667 10.55 0.00 0.00 3.62
1396 1461 2.490685 GAACGCCTCGTCCTCCTC 59.509 66.667 0.00 0.00 39.99 3.71
1397 1462 3.441290 CGAACGCCTCGTCCTCCT 61.441 66.667 0.00 0.00 42.89 3.69
1644 1709 0.391661 GCGGAATCTTGGTCTGCAGA 60.392 55.000 13.74 13.74 45.14 4.26
1699 1764 2.658707 GCACTCACTTGTCGACCGC 61.659 63.158 14.12 0.00 0.00 5.68
1700 1765 0.667487 ATGCACTCACTTGTCGACCG 60.667 55.000 14.12 6.76 0.00 4.79
1733 1805 2.719739 ACAATGCACTGCTAGCAATCT 58.280 42.857 19.86 0.81 46.27 2.40
1744 1816 5.678616 GCAATAATAACCCGAACAATGCACT 60.679 40.000 0.00 0.00 0.00 4.40
1792 1867 6.239629 GGGGAAAATCGTCTATCTATCCAAGT 60.240 42.308 0.00 0.00 0.00 3.16
1801 1876 3.748568 GCAGATGGGGAAAATCGTCTATC 59.251 47.826 0.00 0.00 0.00 2.08
1865 1944 2.076100 TGCAATCAGGTGCTTCTTACG 58.924 47.619 0.00 0.00 45.17 3.18
1881 1960 5.404946 GCAGCTCTGAATTTCTAATTGCAA 58.595 37.500 0.00 0.00 0.00 4.08
1900 1979 1.308783 GCTCTAACAACAGGGGCAGC 61.309 60.000 0.00 0.00 0.00 5.25
1903 1982 1.168714 CAAGCTCTAACAACAGGGGC 58.831 55.000 0.00 0.00 0.00 5.80
1925 2004 2.928801 TGCAGGAGTAGCACAGAAAA 57.071 45.000 0.00 0.00 37.02 2.29
1939 2018 6.769822 ACAGAGGAATAATTAGTCATTGCAGG 59.230 38.462 14.35 0.79 0.00 4.85
1948 2027 6.786967 ACCGTGTACAGAGGAATAATTAGT 57.213 37.500 20.59 0.00 0.00 2.24
1963 2042 5.823209 ATTAAGGCCATTTAACCGTGTAC 57.177 39.130 5.01 0.00 0.00 2.90
1965 2044 8.407832 GTTATAATTAAGGCCATTTAACCGTGT 58.592 33.333 5.01 0.00 0.00 4.49
2099 2183 5.617187 CGAAAATTATGTGACGCTGAATAGC 59.383 40.000 0.00 0.00 46.62 2.97
2100 2184 6.624917 CACGAAAATTATGTGACGCTGAATAG 59.375 38.462 0.00 0.00 35.66 1.73
2122 2206 5.340439 AGGGACTAAGGAATAGTTTCACG 57.660 43.478 0.00 0.00 45.00 4.35
2134 2218 3.485463 TGTGTGAACAAGGGACTAAGG 57.515 47.619 0.00 0.00 38.49 2.69
2136 2220 4.431416 ACATGTGTGAACAAGGGACTAA 57.569 40.909 0.00 0.00 38.49 2.24
2203 2337 3.007614 AGCGCAGAGGGACTAAACTAAAA 59.992 43.478 11.47 0.00 41.55 1.52
2232 2367 5.593095 TCAGTACCATATATAGCCTAAGCGG 59.407 44.000 0.00 0.00 46.67 5.52
2265 2400 7.009631 GTGTCACTGTGCTACTAGATATTTGTG 59.990 40.741 2.12 0.00 0.00 3.33
2267 2402 6.477033 GGTGTCACTGTGCTACTAGATATTTG 59.523 42.308 2.12 0.00 0.00 2.32
2277 2412 2.526304 TTCTGGTGTCACTGTGCTAC 57.474 50.000 2.12 4.45 0.00 3.58
2318 2453 6.817765 ATACAGTACTTGTGACCAAAATGG 57.182 37.500 0.00 0.00 41.43 3.16
2320 2455 7.817418 ACAATACAGTACTTGTGACCAAAAT 57.183 32.000 0.00 0.00 41.10 1.82
2321 2456 8.734218 TTACAATACAGTACTTGTGACCAAAA 57.266 30.769 7.97 0.00 41.10 2.44
2323 2458 6.932400 CCTTACAATACAGTACTTGTGACCAA 59.068 38.462 7.97 0.00 41.10 3.67
2324 2459 6.460781 CCTTACAATACAGTACTTGTGACCA 58.539 40.000 7.97 0.00 41.10 4.02
2325 2460 5.873164 CCCTTACAATACAGTACTTGTGACC 59.127 44.000 7.97 0.00 41.10 4.02
2326 2461 6.461640 ACCCTTACAATACAGTACTTGTGAC 58.538 40.000 7.97 0.00 41.10 3.67
2327 2462 6.675413 ACCCTTACAATACAGTACTTGTGA 57.325 37.500 7.97 0.00 41.10 3.58
2328 2463 7.739498 AAACCCTTACAATACAGTACTTGTG 57.261 36.000 7.97 0.32 41.10 3.33
2329 2464 8.215736 AGAAAACCCTTACAATACAGTACTTGT 58.784 33.333 0.00 0.00 43.96 3.16
2330 2465 8.617290 AGAAAACCCTTACAATACAGTACTTG 57.383 34.615 0.00 0.00 0.00 3.16
2332 2467 9.939802 CTAAGAAAACCCTTACAATACAGTACT 57.060 33.333 0.00 0.00 0.00 2.73
2333 2468 8.663025 GCTAAGAAAACCCTTACAATACAGTAC 58.337 37.037 0.00 0.00 0.00 2.73
2334 2469 8.599792 AGCTAAGAAAACCCTTACAATACAGTA 58.400 33.333 0.00 0.00 0.00 2.74
2335 2470 7.459234 AGCTAAGAAAACCCTTACAATACAGT 58.541 34.615 0.00 0.00 0.00 3.55
2336 2471 7.923414 AGCTAAGAAAACCCTTACAATACAG 57.077 36.000 0.00 0.00 0.00 2.74
2337 2472 8.700439 AAAGCTAAGAAAACCCTTACAATACA 57.300 30.769 0.00 0.00 0.00 2.29
2338 2473 8.789762 TGAAAGCTAAGAAAACCCTTACAATAC 58.210 33.333 0.00 0.00 0.00 1.89
2339 2474 8.927675 TGAAAGCTAAGAAAACCCTTACAATA 57.072 30.769 0.00 0.00 0.00 1.90
2340 2475 7.833285 TGAAAGCTAAGAAAACCCTTACAAT 57.167 32.000 0.00 0.00 0.00 2.71
2341 2476 7.286775 ACATGAAAGCTAAGAAAACCCTTACAA 59.713 33.333 0.00 0.00 0.00 2.41
2342 2477 6.775629 ACATGAAAGCTAAGAAAACCCTTACA 59.224 34.615 0.00 0.00 0.00 2.41
2343 2478 7.215719 ACATGAAAGCTAAGAAAACCCTTAC 57.784 36.000 0.00 0.00 0.00 2.34
2344 2479 7.724061 AGAACATGAAAGCTAAGAAAACCCTTA 59.276 33.333 0.00 0.00 0.00 2.69
2345 2480 6.551227 AGAACATGAAAGCTAAGAAAACCCTT 59.449 34.615 0.00 0.00 0.00 3.95
2346 2481 6.071320 AGAACATGAAAGCTAAGAAAACCCT 58.929 36.000 0.00 0.00 0.00 4.34
2347 2482 6.332735 AGAACATGAAAGCTAAGAAAACCC 57.667 37.500 0.00 0.00 0.00 4.11
2348 2483 6.642540 CCAAGAACATGAAAGCTAAGAAAACC 59.357 38.462 0.00 0.00 0.00 3.27
2349 2484 7.203218 ACCAAGAACATGAAAGCTAAGAAAAC 58.797 34.615 0.00 0.00 0.00 2.43
2350 2485 7.346751 ACCAAGAACATGAAAGCTAAGAAAA 57.653 32.000 0.00 0.00 0.00 2.29
2351 2486 6.959639 ACCAAGAACATGAAAGCTAAGAAA 57.040 33.333 0.00 0.00 0.00 2.52
2352 2487 9.733556 TTATACCAAGAACATGAAAGCTAAGAA 57.266 29.630 0.00 0.00 0.00 2.52
2353 2488 9.733556 TTTATACCAAGAACATGAAAGCTAAGA 57.266 29.630 0.00 0.00 0.00 2.10
2357 2492 9.686683 ACTATTTATACCAAGAACATGAAAGCT 57.313 29.630 0.00 0.00 0.00 3.74
2402 2537 7.001674 ACAACACAGTGGTCTATTAATTTGGA 58.998 34.615 5.31 0.00 0.00 3.53
2419 2554 4.494484 TCCATCATCGTCTTACAACACAG 58.506 43.478 0.00 0.00 0.00 3.66
2471 2607 3.056393 AGCAGGCATACAGTACGTTTGTA 60.056 43.478 12.98 12.98 35.66 2.41
2492 2628 4.932200 AGACGATAAGAGTTGGAAAAGCAG 59.068 41.667 0.00 0.00 0.00 4.24
2512 2648 9.599322 GCATGTACACTGCAAATAATATAAGAC 57.401 33.333 19.12 0.00 39.46 3.01
2521 2657 4.837972 TGTAGGCATGTACACTGCAAATA 58.162 39.130 22.92 13.92 41.47 1.40
2522 2658 3.684908 TGTAGGCATGTACACTGCAAAT 58.315 40.909 22.92 14.60 41.47 2.32
2640 2778 7.292129 AAGATGTACTTAAGCTTTACGAAGC 57.708 36.000 3.20 3.04 46.16 3.86
2801 2942 6.183361 ACACTGTCCTCTTTCTGTCATAAAGT 60.183 38.462 9.73 0.00 35.79 2.66
2953 3098 3.068590 CCACCAAGAAGCAAAGTTGACAT 59.931 43.478 0.00 0.00 0.00 3.06
3022 3167 1.336240 GCTTCAACATCACCTTGTGGC 60.336 52.381 0.00 0.00 36.63 5.01
3049 3194 5.485620 CTTGAATCTGGATCTCTGACAACA 58.514 41.667 0.00 0.00 0.00 3.33
3119 3264 4.881850 GCGGGAAGATGAAGGATAAGAAAA 59.118 41.667 0.00 0.00 0.00 2.29
3228 3382 4.446994 TGTTTTGCACAATCACACAAGA 57.553 36.364 0.00 0.00 29.87 3.02
3339 3493 5.991606 CGCAGAAATGGATAGAAATGGAGTA 59.008 40.000 0.00 0.00 0.00 2.59
3340 3494 4.818546 CGCAGAAATGGATAGAAATGGAGT 59.181 41.667 0.00 0.00 0.00 3.85
3341 3495 5.049818 GTCGCAGAAATGGATAGAAATGGAG 60.050 44.000 0.00 0.00 39.69 3.86
3342 3496 4.816385 GTCGCAGAAATGGATAGAAATGGA 59.184 41.667 0.00 0.00 39.69 3.41
3343 3497 4.576053 TGTCGCAGAAATGGATAGAAATGG 59.424 41.667 0.00 0.00 39.69 3.16
3344 3498 5.739752 TGTCGCAGAAATGGATAGAAATG 57.260 39.130 0.00 0.00 39.69 2.32
3345 3499 5.882557 ACTTGTCGCAGAAATGGATAGAAAT 59.117 36.000 0.00 0.00 39.69 2.17
3346 3500 5.245531 ACTTGTCGCAGAAATGGATAGAAA 58.754 37.500 0.00 0.00 39.69 2.52
3347 3501 4.832248 ACTTGTCGCAGAAATGGATAGAA 58.168 39.130 0.00 0.00 39.69 2.10
3348 3502 4.471904 ACTTGTCGCAGAAATGGATAGA 57.528 40.909 0.00 0.00 39.69 1.98
3349 3503 6.851222 ATTACTTGTCGCAGAAATGGATAG 57.149 37.500 0.00 0.00 39.69 2.08
3350 3504 8.773645 CATAATTACTTGTCGCAGAAATGGATA 58.226 33.333 0.00 0.00 39.69 2.59
3351 3505 7.255242 CCATAATTACTTGTCGCAGAAATGGAT 60.255 37.037 0.00 0.00 39.69 3.41
3352 3506 6.038161 CCATAATTACTTGTCGCAGAAATGGA 59.962 38.462 0.00 0.00 39.69 3.41
3353 3507 6.038161 TCCATAATTACTTGTCGCAGAAATGG 59.962 38.462 0.00 0.00 39.69 3.16
3354 3508 7.015226 TCCATAATTACTTGTCGCAGAAATG 57.985 36.000 0.00 0.00 39.69 2.32
3355 3509 7.283127 ACATCCATAATTACTTGTCGCAGAAAT 59.717 33.333 0.00 0.00 39.69 2.17
3356 3510 6.597672 ACATCCATAATTACTTGTCGCAGAAA 59.402 34.615 0.00 0.00 39.69 2.52
3357 3511 6.112734 ACATCCATAATTACTTGTCGCAGAA 58.887 36.000 0.00 0.00 39.69 3.02
3358 3512 5.670485 ACATCCATAATTACTTGTCGCAGA 58.330 37.500 0.00 0.00 0.00 4.26
3359 3513 5.991328 ACATCCATAATTACTTGTCGCAG 57.009 39.130 0.00 0.00 0.00 5.18
3360 3514 6.578944 ACTACATCCATAATTACTTGTCGCA 58.421 36.000 0.00 0.00 0.00 5.10
3361 3515 7.650504 TGTACTACATCCATAATTACTTGTCGC 59.349 37.037 0.00 0.00 0.00 5.19
3362 3516 9.692749 ATGTACTACATCCATAATTACTTGTCG 57.307 33.333 0.00 0.00 32.38 4.35
3373 3527 9.917129 CCGTTGTAAATATGTACTACATCCATA 57.083 33.333 15.18 0.00 39.88 2.74
3374 3528 8.644216 TCCGTTGTAAATATGTACTACATCCAT 58.356 33.333 15.18 0.00 39.88 3.41
3375 3529 8.009622 TCCGTTGTAAATATGTACTACATCCA 57.990 34.615 15.18 0.00 39.88 3.41
3376 3530 8.876275 TTCCGTTGTAAATATGTACTACATCC 57.124 34.615 15.18 0.00 39.88 3.51
3378 3532 9.656040 TGTTTCCGTTGTAAATATGTACTACAT 57.344 29.630 15.18 6.90 42.35 2.29
3379 3533 9.656040 ATGTTTCCGTTGTAAATATGTACTACA 57.344 29.630 15.18 0.00 31.65 2.74
3381 3535 9.872721 TGATGTTTCCGTTGTAAATATGTACTA 57.127 29.630 4.68 0.00 0.00 1.82
3382 3536 8.780846 TGATGTTTCCGTTGTAAATATGTACT 57.219 30.769 4.68 0.00 0.00 2.73
3383 3537 8.662141 ACTGATGTTTCCGTTGTAAATATGTAC 58.338 33.333 0.00 0.00 0.00 2.90
3437 3593 5.964958 ATTGGGTTGTGAGTCTACAAATG 57.035 39.130 8.95 0.00 41.75 2.32
3514 3670 8.808529 CAGTAGGTTAAAGATAATCAACACTCG 58.191 37.037 0.00 0.00 0.00 4.18
3546 3702 6.515272 ACAAGATGCTATCGTTTTTCCATT 57.485 33.333 0.00 0.00 0.00 3.16
3562 3718 6.618287 TTTCTGGACAACACTTACAAGATG 57.382 37.500 0.00 0.00 0.00 2.90
3618 3775 5.978814 AGGCATGGAGTTTAGTACTGTAAG 58.021 41.667 5.39 0.00 37.17 2.34
3621 3778 4.286032 TGAAGGCATGGAGTTTAGTACTGT 59.714 41.667 5.39 0.00 37.17 3.55
3622 3779 4.832248 TGAAGGCATGGAGTTTAGTACTG 58.168 43.478 5.39 0.00 37.17 2.74
3623 3780 4.532521 ACTGAAGGCATGGAGTTTAGTACT 59.467 41.667 0.00 0.00 40.71 2.73
3624 3781 4.833390 ACTGAAGGCATGGAGTTTAGTAC 58.167 43.478 0.00 0.00 0.00 2.73
3625 3782 5.499004 AACTGAAGGCATGGAGTTTAGTA 57.501 39.130 0.00 0.00 0.00 1.82
3626 3783 4.373156 AACTGAAGGCATGGAGTTTAGT 57.627 40.909 0.00 0.00 0.00 2.24
3627 3784 8.398665 GTTTATAACTGAAGGCATGGAGTTTAG 58.601 37.037 0.00 0.00 31.25 1.85
3628 3785 8.107095 AGTTTATAACTGAAGGCATGGAGTTTA 58.893 33.333 0.00 0.00 41.01 2.01
3631 3788 6.067217 AGTTTATAACTGAAGGCATGGAGT 57.933 37.500 0.00 0.00 41.01 3.85
3633 3790 7.195374 AGTAGTTTATAACTGAAGGCATGGA 57.805 36.000 2.45 0.00 42.84 3.41
3634 3791 7.865706 AAGTAGTTTATAACTGAAGGCATGG 57.134 36.000 2.45 0.00 42.84 3.66
3637 3794 9.871238 CTCTTAAGTAGTTTATAACTGAAGGCA 57.129 33.333 1.63 0.00 42.84 4.75
3638 3795 9.872721 ACTCTTAAGTAGTTTATAACTGAAGGC 57.127 33.333 1.63 0.00 42.84 4.35
3674 3831 7.441157 TCAAAGTAGAAATACTTATCCGGCATG 59.559 37.037 0.00 0.00 39.18 4.06
3690 3847 9.561069 GGATCATAATAAGCCTTCAAAGTAGAA 57.439 33.333 0.00 0.00 0.00 2.10
3817 3981 4.407621 TGTTCCTCAGAAAACAGAGTACCA 59.592 41.667 0.00 0.00 32.58 3.25
3888 4056 5.632347 GCAGAGAATGTGGAAAATTGTTCAG 59.368 40.000 0.00 0.00 0.00 3.02
3941 4113 9.464714 TGCGTAACACACATTAAAACAATTATT 57.535 25.926 0.00 0.00 0.00 1.40
3942 4114 9.123709 CTGCGTAACACACATTAAAACAATTAT 57.876 29.630 0.00 0.00 0.00 1.28
4047 4220 2.002586 CTTCTTTGGTGTCGCATCGAT 58.997 47.619 0.00 0.00 38.42 3.59
4048 4221 1.000394 TCTTCTTTGGTGTCGCATCGA 60.000 47.619 0.00 0.00 0.00 3.59
4052 4225 1.138069 TCTGTCTTCTTTGGTGTCGCA 59.862 47.619 0.00 0.00 0.00 5.10
4058 4231 3.652869 TCCCAGAATCTGTCTTCTTTGGT 59.347 43.478 9.63 0.00 33.18 3.67
4061 4234 6.239148 GCTTTTTCCCAGAATCTGTCTTCTTT 60.239 38.462 9.63 0.00 33.18 2.52
4068 4241 1.541588 GCGCTTTTTCCCAGAATCTGT 59.458 47.619 9.63 0.00 0.00 3.41
4107 4280 4.043200 GCCTGGCGTGAAAGGTGC 62.043 66.667 1.35 0.00 35.86 5.01
4136 4309 2.110835 TTGCTGTCGCTGCCTTCA 59.889 55.556 0.00 0.00 36.97 3.02
4259 4432 2.124403 CTAGGCCTGCCTTGCTGG 60.124 66.667 17.99 7.55 45.70 4.85
4346 4519 1.742831 TGCTTGCGTTTCTTGTTCAGT 59.257 42.857 0.00 0.00 0.00 3.41
4420 4593 3.565764 GGAATGATCCATCACAGGACA 57.434 47.619 0.00 0.00 45.79 4.02
4436 4615 7.070821 ACACTCCTATTACATAACGAAGGGAAT 59.929 37.037 0.00 0.00 0.00 3.01
4440 4619 6.802608 TGACACTCCTATTACATAACGAAGG 58.197 40.000 0.00 0.00 0.00 3.46
4448 4627 8.739972 GTCCAAAATTTGACACTCCTATTACAT 58.260 33.333 7.37 0.00 0.00 2.29
4513 4699 5.569059 CAGCAACATCAACCTCGTATTTTTC 59.431 40.000 0.00 0.00 0.00 2.29
4548 4734 3.886549 ACGACTACACTCGACTCTTTTG 58.113 45.455 0.00 0.00 37.11 2.44
4587 4773 1.282382 TTAGTACAGGGGCCAAGACC 58.718 55.000 4.39 0.00 0.00 3.85
4678 4864 5.512298 TCCATCACTTGAATGACATGGAAT 58.488 37.500 0.00 0.00 35.67 3.01
4680 4866 4.573021 TCCATCACTTGAATGACATGGA 57.427 40.909 0.00 0.00 36.05 3.41
4689 4875 5.932303 GCTACTTGTAGTTCCATCACTTGAA 59.068 40.000 9.22 0.00 0.00 2.69
4712 4898 7.470900 TGAATTTTCTTTTTGACCAAACATGC 58.529 30.769 0.00 0.00 0.00 4.06
4723 4909 8.212317 ACCAAGACCAATGAATTTTCTTTTTG 57.788 30.769 0.00 0.00 0.00 2.44
4724 4910 9.898152 TTACCAAGACCAATGAATTTTCTTTTT 57.102 25.926 0.00 0.00 0.00 1.94
4725 4911 9.898152 TTTACCAAGACCAATGAATTTTCTTTT 57.102 25.926 0.00 0.00 0.00 2.27
4729 4915 9.366216 GGTATTTACCAAGACCAATGAATTTTC 57.634 33.333 1.79 0.00 42.99 2.29
4732 4918 8.664669 AAGGTATTTACCAAGACCAATGAATT 57.335 30.769 9.36 0.00 45.53 2.17
4734 4920 8.364142 CAAAAGGTATTTACCAAGACCAATGAA 58.636 33.333 9.36 0.00 45.53 2.57
4773 4959 3.212685 CCATGCCAAAAGCCTTCAAAAA 58.787 40.909 0.00 0.00 42.71 1.94
4774 4960 2.172293 ACCATGCCAAAAGCCTTCAAAA 59.828 40.909 0.00 0.00 42.71 2.44
4775 4961 1.767681 ACCATGCCAAAAGCCTTCAAA 59.232 42.857 0.00 0.00 42.71 2.69
4776 4962 1.422531 ACCATGCCAAAAGCCTTCAA 58.577 45.000 0.00 0.00 42.71 2.69
4777 4963 1.422531 AACCATGCCAAAAGCCTTCA 58.577 45.000 0.00 0.00 42.71 3.02
4778 4964 2.549064 AAACCATGCCAAAAGCCTTC 57.451 45.000 0.00 0.00 42.71 3.46
4779 4965 3.390967 ACTAAAACCATGCCAAAAGCCTT 59.609 39.130 0.00 0.00 42.71 4.35
4780 4966 2.972021 ACTAAAACCATGCCAAAAGCCT 59.028 40.909 0.00 0.00 42.71 4.58
4781 4967 3.401033 ACTAAAACCATGCCAAAAGCC 57.599 42.857 0.00 0.00 42.71 4.35
4782 4968 3.745975 GGAACTAAAACCATGCCAAAAGC 59.254 43.478 0.00 0.00 44.14 3.51
4783 4969 4.954875 TGGAACTAAAACCATGCCAAAAG 58.045 39.130 0.00 0.00 0.00 2.27
4784 4970 5.359194 TTGGAACTAAAACCATGCCAAAA 57.641 34.783 0.00 0.00 36.02 2.44
4785 4971 5.303971 CATTGGAACTAAAACCATGCCAAA 58.696 37.500 0.00 0.00 37.46 3.28
4786 4972 4.262808 CCATTGGAACTAAAACCATGCCAA 60.263 41.667 0.00 0.00 38.19 4.52
4787 4973 3.260380 CCATTGGAACTAAAACCATGCCA 59.740 43.478 0.00 0.00 36.02 4.92
4788 4974 3.513515 TCCATTGGAACTAAAACCATGCC 59.486 43.478 1.94 0.00 36.02 4.40
4789 4975 4.799564 TCCATTGGAACTAAAACCATGC 57.200 40.909 1.94 0.00 36.02 4.06
4801 4987 4.402616 AAATCCCTCTGTTCCATTGGAA 57.597 40.909 14.24 14.24 39.66 3.53
4802 4988 4.088634 CAAAATCCCTCTGTTCCATTGGA 58.911 43.478 0.00 0.00 0.00 3.53
4803 4989 4.088634 TCAAAATCCCTCTGTTCCATTGG 58.911 43.478 0.00 0.00 0.00 3.16
4804 4990 5.927281 ATCAAAATCCCTCTGTTCCATTG 57.073 39.130 0.00 0.00 0.00 2.82
4805 4991 6.259123 AGAATCAAAATCCCTCTGTTCCATT 58.741 36.000 0.00 0.00 0.00 3.16
4806 4992 5.835582 AGAATCAAAATCCCTCTGTTCCAT 58.164 37.500 0.00 0.00 0.00 3.41
4807 4993 5.222109 TGAGAATCAAAATCCCTCTGTTCCA 60.222 40.000 0.00 0.00 45.97 3.53
4808 4994 5.256474 TGAGAATCAAAATCCCTCTGTTCC 58.744 41.667 0.00 0.00 45.97 3.62
4823 5009 7.645102 AAACCCATGTTTGAGCTTGAGAATCA 61.645 38.462 0.00 0.00 43.16 2.57
4824 5010 3.760684 ACCCATGTTTGAGCTTGAGAATC 59.239 43.478 0.00 0.00 0.00 2.52
4825 5011 3.771216 ACCCATGTTTGAGCTTGAGAAT 58.229 40.909 0.00 0.00 0.00 2.40
4826 5012 3.228188 ACCCATGTTTGAGCTTGAGAA 57.772 42.857 0.00 0.00 0.00 2.87
4827 5013 2.957402 ACCCATGTTTGAGCTTGAGA 57.043 45.000 0.00 0.00 0.00 3.27
4828 5014 4.082571 CCTAAACCCATGTTTGAGCTTGAG 60.083 45.833 1.14 0.00 44.27 3.02
4829 5015 3.826157 CCTAAACCCATGTTTGAGCTTGA 59.174 43.478 1.14 0.00 44.27 3.02
4830 5016 3.573967 ACCTAAACCCATGTTTGAGCTTG 59.426 43.478 1.14 0.00 44.27 4.01
4831 5017 3.844640 ACCTAAACCCATGTTTGAGCTT 58.155 40.909 1.14 0.00 44.27 3.74
4832 5018 3.525800 ACCTAAACCCATGTTTGAGCT 57.474 42.857 0.00 0.00 44.27 4.09
4833 5019 5.466819 GTTAACCTAAACCCATGTTTGAGC 58.533 41.667 0.00 0.00 44.27 4.26
4834 5020 5.695818 CGTTAACCTAAACCCATGTTTGAG 58.304 41.667 0.00 0.00 44.27 3.02
4835 5021 4.023021 GCGTTAACCTAAACCCATGTTTGA 60.023 41.667 0.00 0.00 44.27 2.69
4836 5022 4.022676 AGCGTTAACCTAAACCCATGTTTG 60.023 41.667 0.00 0.00 44.27 2.93
4837 5023 4.022676 CAGCGTTAACCTAAACCCATGTTT 60.023 41.667 0.00 0.00 46.22 2.83
4838 5024 3.504520 CAGCGTTAACCTAAACCCATGTT 59.495 43.478 0.00 0.00 35.82 2.71
4839 5025 3.078837 CAGCGTTAACCTAAACCCATGT 58.921 45.455 0.00 0.00 0.00 3.21
4840 5026 2.159435 GCAGCGTTAACCTAAACCCATG 60.159 50.000 0.00 0.00 0.00 3.66
4841 5027 2.089201 GCAGCGTTAACCTAAACCCAT 58.911 47.619 0.00 0.00 0.00 4.00
4842 5028 1.525941 GCAGCGTTAACCTAAACCCA 58.474 50.000 0.00 0.00 0.00 4.51
4843 5029 0.445043 CGCAGCGTTAACCTAAACCC 59.555 55.000 6.65 0.00 0.00 4.11
4844 5030 1.150827 ACGCAGCGTTAACCTAAACC 58.849 50.000 16.61 0.00 36.35 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.