Multiple sequence alignment - TraesCS4A01G322000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G322000 chr4A 100.000 3834 0 0 1 3834 610133777 610129944 0.000000e+00 7081.0
1 TraesCS4A01G322000 chr4A 90.826 1864 144 6 1067 2903 610091037 610089174 0.000000e+00 2470.0
2 TraesCS4A01G322000 chr4A 89.155 876 90 5 1 874 196554223 196553351 0.000000e+00 1086.0
3 TraesCS4A01G322000 chr4A 77.833 1412 270 28 1400 2782 616017159 616015762 0.000000e+00 833.0
4 TraesCS4A01G322000 chr4A 87.818 550 67 0 2245 2794 610257069 610256520 0.000000e+00 645.0
5 TraesCS4A01G322000 chr4A 88.533 375 34 7 2843 3209 610256271 610255898 2.720000e-121 446.0
6 TraesCS4A01G322000 chr4A 94.545 55 3 0 3780 3834 642952546 642952492 6.820000e-13 86.1
7 TraesCS4A01G322000 chr5D 91.719 1751 139 5 1067 2811 557923499 557925249 0.000000e+00 2425.0
8 TraesCS4A01G322000 chr5D 83.594 1408 216 12 1397 2795 557891294 557889893 0.000000e+00 1306.0
9 TraesCS4A01G322000 chr5D 88.820 966 96 7 1088 2043 557803159 557804122 0.000000e+00 1175.0
10 TraesCS4A01G322000 chr5D 87.422 803 95 6 2035 2836 557821425 557822222 0.000000e+00 918.0
11 TraesCS4A01G322000 chr5D 80.920 870 150 14 1409 2269 558722106 558722968 0.000000e+00 673.0
12 TraesCS4A01G322000 chr5D 81.818 418 57 9 2381 2796 557889089 557888689 2.210000e-87 333.0
13 TraesCS4A01G322000 chr5D 85.165 182 24 3 3209 3389 59947843 59947664 2.350000e-42 183.0
14 TraesCS4A01G322000 chr5B 92.458 1684 101 10 2177 3834 705031497 705033180 0.000000e+00 2383.0
15 TraesCS4A01G322000 chr5B 92.377 669 50 1 1512 2180 705027432 705028099 0.000000e+00 952.0
16 TraesCS4A01G322000 chr5B 76.939 1418 264 37 1400 2782 699294635 699293246 0.000000e+00 749.0
17 TraesCS4A01G322000 chr5B 80.000 870 159 15 1409 2269 704093143 704092280 2.510000e-176 628.0
18 TraesCS4A01G322000 chr1D 90.982 876 75 4 1 873 16337462 16338336 0.000000e+00 1177.0
19 TraesCS4A01G322000 chr1D 90.753 876 76 5 1 873 16347650 16348523 0.000000e+00 1164.0
20 TraesCS4A01G322000 chrUn 90.753 876 76 5 1 873 305007017 305007890 0.000000e+00 1164.0
21 TraesCS4A01G322000 chrUn 88.686 875 92 6 1 871 115113551 115114422 0.000000e+00 1061.0
22 TraesCS4A01G322000 chr3D 90.319 878 82 3 1 876 70684373 70683497 0.000000e+00 1147.0
23 TraesCS4A01G322000 chr3D 88.584 876 92 7 1 871 275837748 275838620 0.000000e+00 1057.0
24 TraesCS4A01G322000 chr3D 90.741 54 5 0 3780 3833 371872257 371872204 5.310000e-09 73.1
25 TraesCS4A01G322000 chr2D 89.671 881 84 6 1 876 617136469 617135591 0.000000e+00 1116.0
26 TraesCS4A01G322000 chr2D 89.371 875 86 6 1 871 610109950 610110821 0.000000e+00 1094.0
27 TraesCS4A01G322000 chr2D 88.957 163 16 2 3209 3370 336511134 336511295 2.340000e-47 200.0
28 TraesCS4A01G322000 chr2D 94.545 55 3 0 3780 3834 533126207 533126153 6.820000e-13 86.1
29 TraesCS4A01G322000 chr4D 89.873 158 13 2 3209 3365 369111388 369111543 2.340000e-47 200.0
30 TraesCS4A01G322000 chr1A 90.260 154 14 1 3209 3361 71070595 71070748 2.340000e-47 200.0
31 TraesCS4A01G322000 chr6D 87.719 171 20 1 3209 3378 462227282 462227452 8.400000e-47 198.0
32 TraesCS4A01G322000 chr6A 88.608 158 17 1 3209 3365 549536977 549536820 1.410000e-44 191.0
33 TraesCS4A01G322000 chr5A 85.027 187 21 6 3209 3391 558675497 558675680 2.350000e-42 183.0
34 TraesCS4A01G322000 chr5A 91.304 46 4 0 3781 3826 442712283 442712328 3.200000e-06 63.9
35 TraesCS4A01G322000 chr3B 87.500 160 19 1 3208 3366 226081169 226081328 2.350000e-42 183.0
36 TraesCS4A01G322000 chr3B 75.240 416 86 7 2381 2794 751058376 751057976 8.460000e-42 182.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G322000 chr4A 610129944 610133777 3833 True 7081.0 7081 100.0000 1 3834 1 chr4A.!!$R3 3833
1 TraesCS4A01G322000 chr4A 610089174 610091037 1863 True 2470.0 2470 90.8260 1067 2903 1 chr4A.!!$R2 1836
2 TraesCS4A01G322000 chr4A 196553351 196554223 872 True 1086.0 1086 89.1550 1 874 1 chr4A.!!$R1 873
3 TraesCS4A01G322000 chr4A 616015762 616017159 1397 True 833.0 833 77.8330 1400 2782 1 chr4A.!!$R4 1382
4 TraesCS4A01G322000 chr4A 610255898 610257069 1171 True 545.5 645 88.1755 2245 3209 2 chr4A.!!$R6 964
5 TraesCS4A01G322000 chr5D 557923499 557925249 1750 False 2425.0 2425 91.7190 1067 2811 1 chr5D.!!$F3 1744
6 TraesCS4A01G322000 chr5D 557803159 557804122 963 False 1175.0 1175 88.8200 1088 2043 1 chr5D.!!$F1 955
7 TraesCS4A01G322000 chr5D 557821425 557822222 797 False 918.0 918 87.4220 2035 2836 1 chr5D.!!$F2 801
8 TraesCS4A01G322000 chr5D 557888689 557891294 2605 True 819.5 1306 82.7060 1397 2796 2 chr5D.!!$R2 1399
9 TraesCS4A01G322000 chr5D 558722106 558722968 862 False 673.0 673 80.9200 1409 2269 1 chr5D.!!$F4 860
10 TraesCS4A01G322000 chr5B 705027432 705033180 5748 False 1667.5 2383 92.4175 1512 3834 2 chr5B.!!$F1 2322
11 TraesCS4A01G322000 chr5B 699293246 699294635 1389 True 749.0 749 76.9390 1400 2782 1 chr5B.!!$R1 1382
12 TraesCS4A01G322000 chr5B 704092280 704093143 863 True 628.0 628 80.0000 1409 2269 1 chr5B.!!$R2 860
13 TraesCS4A01G322000 chr1D 16337462 16338336 874 False 1177.0 1177 90.9820 1 873 1 chr1D.!!$F1 872
14 TraesCS4A01G322000 chr1D 16347650 16348523 873 False 1164.0 1164 90.7530 1 873 1 chr1D.!!$F2 872
15 TraesCS4A01G322000 chrUn 305007017 305007890 873 False 1164.0 1164 90.7530 1 873 1 chrUn.!!$F2 872
16 TraesCS4A01G322000 chrUn 115113551 115114422 871 False 1061.0 1061 88.6860 1 871 1 chrUn.!!$F1 870
17 TraesCS4A01G322000 chr3D 70683497 70684373 876 True 1147.0 1147 90.3190 1 876 1 chr3D.!!$R1 875
18 TraesCS4A01G322000 chr3D 275837748 275838620 872 False 1057.0 1057 88.5840 1 871 1 chr3D.!!$F1 870
19 TraesCS4A01G322000 chr2D 617135591 617136469 878 True 1116.0 1116 89.6710 1 876 1 chr2D.!!$R2 875
20 TraesCS4A01G322000 chr2D 610109950 610110821 871 False 1094.0 1094 89.3710 1 871 1 chr2D.!!$F2 870

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
101 102 0.173708 AGCTGTCGAACTCCCGAATC 59.826 55.0 0.0 0.0 40.51 2.52 F
342 343 0.250513 ATGTTCCTCTTCCTGGACGC 59.749 55.0 0.0 0.0 32.65 5.19 F
1015 1025 0.300789 GCGCTGTGGCTTCGTTATAC 59.699 55.0 0.0 0.0 36.09 1.47 F
1316 1332 0.463295 CAGCCATCCATGCGAGAAGT 60.463 55.0 0.0 0.0 0.00 3.01 F
2017 2061 0.620556 GGTCTCCCAGGATGAAAGCA 59.379 55.0 0.0 0.0 39.69 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1061 1071 0.451628 CAAGCTGTTGCGTGTGATCG 60.452 55.000 0.00 0.0 45.42 3.69 R
1150 1166 0.609957 TTCTTGGTCATGCAGCTGGG 60.610 55.000 17.12 0.0 0.00 4.45 R
2543 5994 1.003580 TGAACCCCATGAAGAGAGCAC 59.996 52.381 0.00 0.0 0.00 4.40 R
2554 6005 1.295423 CGACGGAGTTGAACCCCAT 59.705 57.895 0.00 0.0 47.00 4.00 R
3504 7196 1.539929 GCTGCTCCGCTGACTATCATT 60.540 52.381 0.00 0.0 0.00 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
98 99 0.322277 AGTAGCTGTCGAACTCCCGA 60.322 55.000 0.00 0.00 36.06 5.14
101 102 0.173708 AGCTGTCGAACTCCCGAATC 59.826 55.000 0.00 0.00 40.51 2.52
130 131 6.129179 TCACAATCCTGAGGAAAAGTTTTCT 58.871 36.000 23.89 12.56 34.34 2.52
146 147 3.793797 TTTCTGCTCATCCGATAACGA 57.206 42.857 0.00 0.00 42.66 3.85
170 171 2.540769 CCGAAATGTTTTGTCGCTGTGT 60.541 45.455 0.00 0.00 33.46 3.72
184 185 2.181021 GTGTAGTGGAGCGTCGGG 59.819 66.667 0.00 0.00 0.00 5.14
217 218 3.300388 AGTAGAGCATGCAGTAGCCTTA 58.700 45.455 21.98 0.00 41.13 2.69
289 290 1.460743 CTGCGTCTTTTCATTGCTCGA 59.539 47.619 0.00 0.00 0.00 4.04
342 343 0.250513 ATGTTCCTCTTCCTGGACGC 59.749 55.000 0.00 0.00 32.65 5.19
389 390 2.258591 GTGAGCGCTTCCTCGTCA 59.741 61.111 13.26 0.00 34.56 4.35
463 466 1.433064 CGTACCCGCCGCTAAACTA 59.567 57.895 0.00 0.00 0.00 2.24
484 487 2.257371 CTCCGCGACCAGAAACGA 59.743 61.111 8.23 0.00 0.00 3.85
486 489 2.355363 CCGCGACCAGAAACGACA 60.355 61.111 8.23 0.00 0.00 4.35
537 540 1.587054 CCTCGACGAACCTCTGCTT 59.413 57.895 0.00 0.00 0.00 3.91
577 580 2.219458 CTATCTAGCGGTGAAGGACGA 58.781 52.381 0.00 0.00 0.00 4.20
583 586 2.668632 GGTGAAGGACGATGGGCA 59.331 61.111 0.00 0.00 0.00 5.36
699 704 2.599875 TGCATTTCCCTTGCGCCA 60.600 55.556 4.18 0.00 43.10 5.69
733 740 4.077184 CCTAGTGCGCCGGGTTCA 62.077 66.667 4.18 0.00 0.00 3.18
788 796 2.125673 CGGATTTCGGCGTCCTGT 60.126 61.111 6.85 0.00 34.75 4.00
792 800 2.798148 GATTTCGGCGTCCTGTGGGT 62.798 60.000 6.85 0.00 0.00 4.51
853 863 2.814805 CCTAGGGGCATATTGATGGG 57.185 55.000 0.00 0.00 33.26 4.00
876 886 2.036992 CGGCTGGAGATGCTCTAATCTT 59.963 50.000 0.00 0.00 37.03 2.40
877 887 3.663025 GGCTGGAGATGCTCTAATCTTC 58.337 50.000 0.00 0.00 37.03 2.87
878 888 3.316283 GCTGGAGATGCTCTAATCTTCG 58.684 50.000 0.00 0.00 37.03 3.79
879 889 3.243704 GCTGGAGATGCTCTAATCTTCGT 60.244 47.826 0.00 0.00 37.03 3.85
880 890 4.545610 CTGGAGATGCTCTAATCTTCGTC 58.454 47.826 0.00 0.00 37.03 4.20
881 891 3.003793 TGGAGATGCTCTAATCTTCGTCG 59.996 47.826 0.00 0.00 37.03 5.12
882 892 2.977169 GAGATGCTCTAATCTTCGTCGC 59.023 50.000 0.00 0.00 37.03 5.19
883 893 2.359214 AGATGCTCTAATCTTCGTCGCA 59.641 45.455 0.00 0.00 32.88 5.10
884 894 2.647529 TGCTCTAATCTTCGTCGCAA 57.352 45.000 0.00 0.00 0.00 4.85
885 895 3.165058 TGCTCTAATCTTCGTCGCAAT 57.835 42.857 0.00 0.00 0.00 3.56
886 896 2.860136 TGCTCTAATCTTCGTCGCAATG 59.140 45.455 0.00 0.00 0.00 2.82
887 897 2.860735 GCTCTAATCTTCGTCGCAATGT 59.139 45.455 0.00 0.00 0.00 2.71
888 898 3.307242 GCTCTAATCTTCGTCGCAATGTT 59.693 43.478 0.00 0.00 0.00 2.71
889 899 4.503007 GCTCTAATCTTCGTCGCAATGTTA 59.497 41.667 0.00 0.00 0.00 2.41
890 900 5.554696 GCTCTAATCTTCGTCGCAATGTTAC 60.555 44.000 0.00 0.00 0.00 2.50
891 901 5.404096 TCTAATCTTCGTCGCAATGTTACA 58.596 37.500 0.00 0.00 0.00 2.41
892 902 5.865013 TCTAATCTTCGTCGCAATGTTACAA 59.135 36.000 0.00 0.00 0.00 2.41
893 903 5.351233 AATCTTCGTCGCAATGTTACAAA 57.649 34.783 0.00 0.00 0.00 2.83
894 904 4.797693 TCTTCGTCGCAATGTTACAAAA 57.202 36.364 0.00 0.00 0.00 2.44
895 905 5.351233 TCTTCGTCGCAATGTTACAAAAT 57.649 34.783 0.00 0.00 0.00 1.82
896 906 5.753744 TCTTCGTCGCAATGTTACAAAATT 58.246 33.333 0.00 0.00 0.00 1.82
897 907 5.623264 TCTTCGTCGCAATGTTACAAAATTG 59.377 36.000 1.17 1.17 36.95 2.32
898 908 5.096954 TCGTCGCAATGTTACAAAATTGA 57.903 34.783 8.71 0.00 36.13 2.57
899 909 4.907010 TCGTCGCAATGTTACAAAATTGAC 59.093 37.500 8.71 1.01 36.13 3.18
900 910 4.909305 CGTCGCAATGTTACAAAATTGACT 59.091 37.500 8.71 0.00 36.13 3.41
901 911 5.164292 CGTCGCAATGTTACAAAATTGACTG 60.164 40.000 8.71 0.00 36.13 3.51
902 912 5.685511 GTCGCAATGTTACAAAATTGACTGT 59.314 36.000 8.71 0.00 36.13 3.55
903 913 6.198216 GTCGCAATGTTACAAAATTGACTGTT 59.802 34.615 8.71 0.00 36.13 3.16
904 914 6.754209 TCGCAATGTTACAAAATTGACTGTTT 59.246 30.769 8.71 0.00 36.13 2.83
905 915 7.276658 TCGCAATGTTACAAAATTGACTGTTTT 59.723 29.630 8.71 0.00 36.13 2.43
906 916 7.902403 CGCAATGTTACAAAATTGACTGTTTTT 59.098 29.630 8.71 0.00 36.13 1.94
925 935 5.365403 TTTTTGTTTGAGTGACGACTGTT 57.635 34.783 0.00 0.00 30.16 3.16
926 936 5.365403 TTTTGTTTGAGTGACGACTGTTT 57.635 34.783 0.00 0.00 30.16 2.83
927 937 5.365403 TTTGTTTGAGTGACGACTGTTTT 57.635 34.783 0.00 0.00 30.16 2.43
928 938 5.365403 TTGTTTGAGTGACGACTGTTTTT 57.635 34.783 0.00 0.00 30.16 1.94
959 969 3.527434 GGTGGAAATCGACCGAGTT 57.473 52.632 4.76 4.76 35.09 3.01
960 970 1.804601 GGTGGAAATCGACCGAGTTT 58.195 50.000 6.56 3.70 35.09 2.66
961 971 2.963432 GGTGGAAATCGACCGAGTTTA 58.037 47.619 6.56 0.00 35.09 2.01
962 972 2.928116 GGTGGAAATCGACCGAGTTTAG 59.072 50.000 6.56 0.00 35.09 1.85
963 973 3.367703 GGTGGAAATCGACCGAGTTTAGA 60.368 47.826 6.56 0.00 35.09 2.10
964 974 4.240096 GTGGAAATCGACCGAGTTTAGAA 58.760 43.478 6.56 0.00 32.32 2.10
965 975 4.091075 GTGGAAATCGACCGAGTTTAGAAC 59.909 45.833 6.56 0.86 32.32 3.01
966 976 4.021719 TGGAAATCGACCGAGTTTAGAACT 60.022 41.667 6.56 0.00 46.38 3.01
967 977 4.928020 GGAAATCGACCGAGTTTAGAACTT 59.072 41.667 6.56 0.00 43.03 2.66
968 978 5.163982 GGAAATCGACCGAGTTTAGAACTTG 60.164 44.000 6.56 1.82 43.03 3.16
969 979 4.778534 ATCGACCGAGTTTAGAACTTGA 57.221 40.909 9.16 0.00 44.20 3.02
970 980 4.778534 TCGACCGAGTTTAGAACTTGAT 57.221 40.909 9.16 0.00 44.20 2.57
971 981 5.885230 TCGACCGAGTTTAGAACTTGATA 57.115 39.130 9.16 0.00 44.20 2.15
972 982 6.446781 TCGACCGAGTTTAGAACTTGATAT 57.553 37.500 9.16 0.00 44.20 1.63
973 983 6.860080 TCGACCGAGTTTAGAACTTGATATT 58.140 36.000 9.16 0.00 44.20 1.28
974 984 7.988737 TCGACCGAGTTTAGAACTTGATATTA 58.011 34.615 9.16 0.00 44.20 0.98
975 985 8.461222 TCGACCGAGTTTAGAACTTGATATTAA 58.539 33.333 9.16 0.00 44.20 1.40
976 986 8.744011 CGACCGAGTTTAGAACTTGATATTAAG 58.256 37.037 5.73 5.73 44.20 1.85
977 987 8.421673 ACCGAGTTTAGAACTTGATATTAAGC 57.578 34.615 7.13 0.00 44.20 3.09
978 988 7.494952 ACCGAGTTTAGAACTTGATATTAAGCC 59.505 37.037 7.13 0.52 44.20 4.35
979 989 7.041984 CCGAGTTTAGAACTTGATATTAAGCCC 60.042 40.741 7.13 0.20 44.20 5.19
980 990 7.494625 CGAGTTTAGAACTTGATATTAAGCCCA 59.505 37.037 7.13 0.00 44.20 5.36
981 991 8.738645 AGTTTAGAACTTGATATTAAGCCCAG 57.261 34.615 7.13 0.00 39.04 4.45
982 992 7.283354 AGTTTAGAACTTGATATTAAGCCCAGC 59.717 37.037 7.13 0.00 39.04 4.85
983 993 4.464947 AGAACTTGATATTAAGCCCAGCC 58.535 43.478 7.13 0.00 0.00 4.85
984 994 3.229697 ACTTGATATTAAGCCCAGCCC 57.770 47.619 7.13 0.00 0.00 5.19
985 995 2.154462 CTTGATATTAAGCCCAGCCCG 58.846 52.381 0.00 0.00 0.00 6.13
986 996 1.429930 TGATATTAAGCCCAGCCCGA 58.570 50.000 0.00 0.00 0.00 5.14
987 997 1.071699 TGATATTAAGCCCAGCCCGAC 59.928 52.381 0.00 0.00 0.00 4.79
988 998 1.348036 GATATTAAGCCCAGCCCGACT 59.652 52.381 0.00 0.00 0.00 4.18
989 999 0.756903 TATTAAGCCCAGCCCGACTC 59.243 55.000 0.00 0.00 0.00 3.36
990 1000 2.311688 ATTAAGCCCAGCCCGACTCG 62.312 60.000 0.00 0.00 0.00 4.18
1002 1012 4.057428 GACTCGGAGTGGCGCTGT 62.057 66.667 16.72 0.00 0.00 4.40
1003 1013 4.363990 ACTCGGAGTGGCGCTGTG 62.364 66.667 10.41 0.00 0.00 3.66
1008 1018 3.426568 GAGTGGCGCTGTGGCTTC 61.427 66.667 15.95 9.68 45.14 3.86
1011 1021 4.927782 TGGCGCTGTGGCTTCGTT 62.928 61.111 15.95 0.00 45.14 3.85
1012 1022 2.740826 GGCGCTGTGGCTTCGTTA 60.741 61.111 7.64 0.00 40.72 3.18
1013 1023 2.106683 GGCGCTGTGGCTTCGTTAT 61.107 57.895 7.64 0.00 40.72 1.89
1014 1024 0.808453 GGCGCTGTGGCTTCGTTATA 60.808 55.000 7.64 0.00 40.72 0.98
1015 1025 0.300789 GCGCTGTGGCTTCGTTATAC 59.699 55.000 0.00 0.00 36.09 1.47
1016 1026 1.922570 CGCTGTGGCTTCGTTATACT 58.077 50.000 0.00 0.00 36.09 2.12
1017 1027 1.852895 CGCTGTGGCTTCGTTATACTC 59.147 52.381 0.00 0.00 36.09 2.59
1018 1028 2.479730 CGCTGTGGCTTCGTTATACTCT 60.480 50.000 0.00 0.00 36.09 3.24
1019 1029 3.117046 GCTGTGGCTTCGTTATACTCTC 58.883 50.000 0.00 0.00 35.22 3.20
1020 1030 3.364062 CTGTGGCTTCGTTATACTCTCG 58.636 50.000 0.00 0.00 0.00 4.04
1021 1031 2.751259 TGTGGCTTCGTTATACTCTCGT 59.249 45.455 0.00 0.00 0.00 4.18
1022 1032 3.106672 GTGGCTTCGTTATACTCTCGTG 58.893 50.000 0.00 0.00 0.00 4.35
1023 1033 3.011818 TGGCTTCGTTATACTCTCGTGA 58.988 45.455 0.00 0.00 0.00 4.35
1024 1034 3.630769 TGGCTTCGTTATACTCTCGTGAT 59.369 43.478 0.00 0.00 0.00 3.06
1025 1035 4.818005 TGGCTTCGTTATACTCTCGTGATA 59.182 41.667 0.00 0.00 0.00 2.15
1026 1036 5.472478 TGGCTTCGTTATACTCTCGTGATAT 59.528 40.000 0.00 0.00 0.00 1.63
1027 1037 6.652062 TGGCTTCGTTATACTCTCGTGATATA 59.348 38.462 0.00 0.00 0.00 0.86
1028 1038 6.960431 GGCTTCGTTATACTCTCGTGATATAC 59.040 42.308 0.00 0.00 0.00 1.47
1029 1039 7.360691 GGCTTCGTTATACTCTCGTGATATACA 60.361 40.741 0.00 0.00 0.00 2.29
1030 1040 8.176365 GCTTCGTTATACTCTCGTGATATACAT 58.824 37.037 0.00 0.00 0.00 2.29
1031 1041 9.479278 CTTCGTTATACTCTCGTGATATACATG 57.521 37.037 0.00 0.00 36.90 3.21
1032 1042 7.461918 TCGTTATACTCTCGTGATATACATGC 58.538 38.462 0.00 0.00 35.66 4.06
1033 1043 7.118680 TCGTTATACTCTCGTGATATACATGCA 59.881 37.037 0.00 0.00 35.66 3.96
1034 1044 7.216505 CGTTATACTCTCGTGATATACATGCAC 59.783 40.741 0.00 0.00 35.66 4.57
1040 1050 1.455786 GTGATATACATGCACGTCCGC 59.544 52.381 0.00 0.00 0.00 5.54
1041 1051 1.068474 GATATACATGCACGTCCGCC 58.932 55.000 0.00 0.00 0.00 6.13
1042 1052 0.666274 ATATACATGCACGTCCGCCG 60.666 55.000 0.00 0.00 44.03 6.46
1052 1062 3.992317 GTCCGCCGCCCTCCTATC 61.992 72.222 0.00 0.00 0.00 2.08
1079 1089 1.568612 CCGATCACACGCAACAGCTT 61.569 55.000 0.00 0.00 0.00 3.74
1107 1117 0.590682 CGCAACAACCAGCATACACA 59.409 50.000 0.00 0.00 0.00 3.72
1313 1329 1.913951 AACCAGCCATCCATGCGAGA 61.914 55.000 0.00 0.00 0.00 4.04
1316 1332 0.463295 CAGCCATCCATGCGAGAAGT 60.463 55.000 0.00 0.00 0.00 3.01
1326 1345 2.504244 CGAGAAGTCGTGCCGTCC 60.504 66.667 0.00 0.00 41.57 4.79
1370 1389 3.710722 AAGCCAGGCCACCGAGAG 61.711 66.667 8.22 0.00 0.00 3.20
1452 1471 2.354103 CCTGTTCACCATCATGTCGTCT 60.354 50.000 0.00 0.00 0.00 4.18
1527 1546 2.949106 CACAACGCCTTCTGCCTG 59.051 61.111 0.00 0.00 36.24 4.85
1911 1943 1.320344 TTGCCATCTCTACGACCGCT 61.320 55.000 0.00 0.00 0.00 5.52
2017 2061 0.620556 GGTCTCCCAGGATGAAAGCA 59.379 55.000 0.00 0.00 39.69 3.91
2106 2153 6.980051 ATTGGTACTTTAAATCTCCGTGAC 57.020 37.500 0.00 0.00 0.00 3.67
2143 2190 0.952280 CATGATCATGGGCAGAGTGC 59.048 55.000 25.37 0.00 44.08 4.40
2391 5842 1.334869 GAACTATGGGAAGCCAATGCG 59.665 52.381 0.00 0.00 44.33 4.73
2413 5864 4.436332 GAATGACCAAGAAATTGATGGGC 58.564 43.478 8.72 6.40 42.92 5.36
2472 5923 2.498644 TTGTTGACAAGGTCACCACA 57.501 45.000 0.00 0.00 42.60 4.17
2543 5994 0.810031 CTAAGGGACATTGGCGACCG 60.810 60.000 0.00 0.00 0.00 4.79
2554 6005 2.258591 GCGACCGTGCTCTCTTCA 59.741 61.111 0.00 0.00 0.00 3.02
2731 6182 0.179124 TGACGTTTGGCCAAACTTGC 60.179 50.000 42.87 33.64 46.21 4.01
2785 6236 4.511826 GGATCACGCCAAGGTTTTAGATAG 59.488 45.833 0.00 0.00 0.00 2.08
2971 6624 8.634335 TGTTCATGATTTCATCTAAGGAAACA 57.366 30.769 0.00 0.00 37.10 2.83
3160 6817 7.051623 AGAAAACAGTAATATTGGCCACGATA 58.948 34.615 3.88 1.20 0.00 2.92
3167 6824 7.173218 CAGTAATATTGGCCACGATAACAGATT 59.827 37.037 3.88 0.00 0.00 2.40
3182 6842 8.497554 CGATAACAGATTACTAGTGACTCCTAC 58.502 40.741 5.39 0.00 0.00 3.18
3310 6998 5.233988 AGTGTAGATTCACTCACTTTGCTC 58.766 41.667 0.00 0.00 44.07 4.26
3311 6999 5.011533 AGTGTAGATTCACTCACTTTGCTCT 59.988 40.000 0.00 0.00 44.07 4.09
3320 7008 7.646548 TCACTCACTTTGCTCTATATGTAGT 57.353 36.000 0.00 0.00 0.00 2.73
3322 7010 6.920758 CACTCACTTTGCTCTATATGTAGTCC 59.079 42.308 0.00 0.00 0.00 3.85
3335 7023 9.268282 TCTATATGTAGTCCCTTATTGGAATCC 57.732 37.037 0.00 0.00 35.80 3.01
3342 7033 7.051696 AGTCCCTTATTGGAATCCCTAAAAA 57.948 36.000 0.00 0.00 35.80 1.94
3343 7034 7.662083 AGTCCCTTATTGGAATCCCTAAAAAT 58.338 34.615 0.00 0.00 35.80 1.82
3377 7068 1.267121 ACGGAGGAAGTAGTGTGCAT 58.733 50.000 0.00 0.00 0.00 3.96
3450 7142 1.474879 CCGGTTTTGTTTCACCAGTGT 59.525 47.619 0.00 0.00 31.84 3.55
3504 7196 4.487714 AAATTCGGAGCAGGTAGAATGA 57.512 40.909 4.20 0.00 34.06 2.57
3541 7233 3.198635 AGCAGCAACCTAGAAGAATAGCA 59.801 43.478 0.00 0.00 0.00 3.49
3561 7253 4.776837 AGCATAGCATAGCATAGACTCCTT 59.223 41.667 0.00 0.00 0.00 3.36
3591 7283 5.125356 CAATGCCATCCATACTTCACAGTA 58.875 41.667 0.00 0.00 39.94 2.74
3599 7291 6.605471 TCCATACTTCACAGTACATCAACT 57.395 37.500 0.00 0.00 38.38 3.16
3632 7324 2.609459 ACAAGATATCAAAGCTTCGCGG 59.391 45.455 6.13 0.00 0.00 6.46
3721 7413 1.133482 CCACTTTGTCCCTTCCCTTGT 60.133 52.381 0.00 0.00 0.00 3.16
3783 7475 0.691078 TAGCATGGTCCCTCACTCCC 60.691 60.000 0.00 0.00 0.00 4.30
3795 7487 1.289530 CTCACTCCCTCTTACCTCCCT 59.710 57.143 0.00 0.00 0.00 4.20
3814 7506 7.059156 CCTCCCTTTTTCACATGAGAGATAAT 58.941 38.462 0.00 0.00 0.00 1.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 0.736325 AAGTGCACGACAGCGGATAC 60.736 55.000 12.01 0.00 43.17 2.24
11 12 1.738099 GAAGTGCACGACAGCGGAT 60.738 57.895 12.01 0.00 43.17 4.18
12 13 2.355837 GAAGTGCACGACAGCGGA 60.356 61.111 12.01 0.00 43.17 5.54
13 14 2.356313 AGAAGTGCACGACAGCGG 60.356 61.111 12.01 0.00 43.17 5.52
98 99 5.102953 TCCTCAGGATTGTGAATTCGATT 57.897 39.130 0.04 0.00 0.00 3.34
101 102 5.182001 ACTTTTCCTCAGGATTGTGAATTCG 59.818 40.000 0.00 0.00 0.00 3.34
130 131 0.594028 GCGTCGTTATCGGATGAGCA 60.594 55.000 0.00 0.00 37.69 4.26
146 147 0.659123 GCGACAAAACATTTCGGCGT 60.659 50.000 6.85 0.00 33.28 5.68
170 171 2.036098 TTCCCCGACGCTCCACTA 59.964 61.111 0.00 0.00 0.00 2.74
184 185 2.641305 TGCTCTACTCCGACTACTTCC 58.359 52.381 0.00 0.00 0.00 3.46
217 218 0.608640 AAAGAACCGGCATCGTCTCT 59.391 50.000 0.00 0.00 33.95 3.10
270 271 1.194547 GTCGAGCAATGAAAAGACGCA 59.805 47.619 0.00 0.00 0.00 5.24
289 290 3.710722 CCCTCGAAGCCCTGCTGT 61.711 66.667 0.00 0.00 39.62 4.40
299 300 3.760035 GTCCTCGCAGCCCTCGAA 61.760 66.667 0.00 0.00 35.38 3.71
308 309 0.904649 AACATCTCATGGTCCTCGCA 59.095 50.000 0.00 0.00 33.60 5.10
373 374 1.139734 GATGACGAGGAAGCGCTCA 59.860 57.895 12.06 2.28 33.86 4.26
484 487 1.537990 GCAGTTGGGCGTTTTTCATGT 60.538 47.619 0.00 0.00 0.00 3.21
486 489 1.039856 AGCAGTTGGGCGTTTTTCAT 58.960 45.000 0.00 0.00 39.27 2.57
546 549 0.977395 GCTAGATAGCCAATCCCCGT 59.023 55.000 0.09 0.00 43.39 5.28
583 586 0.987294 AACAGCTGTATCCTGGCACT 59.013 50.000 22.01 0.00 34.65 4.40
640 645 6.866248 TCAAGCGAAAAGTCAAGTTTTTCTTT 59.134 30.769 8.32 0.00 40.60 2.52
685 690 2.048603 GCTCTGGCGCAAGGGAAAT 61.049 57.895 18.30 0.00 38.28 2.17
792 800 4.189539 AAAAATGCCCCAGTCGCA 57.810 50.000 0.00 0.00 41.28 5.10
815 823 2.190841 CCACTTTTTCGGCACCGGT 61.191 57.895 0.00 0.00 40.25 5.28
837 847 1.466526 GCCCCATCAATATGCCCCT 59.533 57.895 0.00 0.00 0.00 4.79
843 853 1.075482 CCAGCCGCCCCATCAATAT 59.925 57.895 0.00 0.00 0.00 1.28
845 855 3.419580 TCCAGCCGCCCCATCAAT 61.420 61.111 0.00 0.00 0.00 2.57
849 859 3.882326 CATCTCCAGCCGCCCCAT 61.882 66.667 0.00 0.00 0.00 4.00
876 886 4.907010 GTCAATTTTGTAACATTGCGACGA 59.093 37.500 0.00 0.00 31.47 4.20
877 887 4.909305 AGTCAATTTTGTAACATTGCGACG 59.091 37.500 0.00 0.00 31.47 5.12
878 888 5.685511 ACAGTCAATTTTGTAACATTGCGAC 59.314 36.000 0.00 0.00 31.47 5.19
879 889 5.826586 ACAGTCAATTTTGTAACATTGCGA 58.173 33.333 0.00 0.00 31.47 5.10
880 890 6.509317 AACAGTCAATTTTGTAACATTGCG 57.491 33.333 0.00 0.00 31.47 4.85
903 913 5.365403 AACAGTCGTCACTCAAACAAAAA 57.635 34.783 0.00 0.00 0.00 1.94
904 914 5.365403 AAACAGTCGTCACTCAAACAAAA 57.635 34.783 0.00 0.00 0.00 2.44
905 915 5.365403 AAAACAGTCGTCACTCAAACAAA 57.635 34.783 0.00 0.00 0.00 2.83
906 916 5.365403 AAAAACAGTCGTCACTCAAACAA 57.635 34.783 0.00 0.00 0.00 2.83
934 944 2.550606 CGGTCGATTTCCACCTCAAAAA 59.449 45.455 0.00 0.00 0.00 1.94
935 945 2.147958 CGGTCGATTTCCACCTCAAAA 58.852 47.619 0.00 0.00 0.00 2.44
936 946 1.345089 TCGGTCGATTTCCACCTCAAA 59.655 47.619 0.00 0.00 0.00 2.69
937 947 0.970640 TCGGTCGATTTCCACCTCAA 59.029 50.000 0.00 0.00 0.00 3.02
938 948 0.530744 CTCGGTCGATTTCCACCTCA 59.469 55.000 0.00 0.00 0.00 3.86
939 949 0.531200 ACTCGGTCGATTTCCACCTC 59.469 55.000 0.00 0.00 0.00 3.85
940 950 0.974383 AACTCGGTCGATTTCCACCT 59.026 50.000 0.00 0.00 0.00 4.00
941 951 1.804601 AAACTCGGTCGATTTCCACC 58.195 50.000 0.00 0.00 0.00 4.61
942 952 3.841643 TCTAAACTCGGTCGATTTCCAC 58.158 45.455 0.00 0.00 0.00 4.02
943 953 4.021719 AGTTCTAAACTCGGTCGATTTCCA 60.022 41.667 0.00 0.00 37.02 3.53
944 954 4.492611 AGTTCTAAACTCGGTCGATTTCC 58.507 43.478 0.00 0.00 37.02 3.13
945 955 5.632347 TCAAGTTCTAAACTCGGTCGATTTC 59.368 40.000 0.00 0.00 41.91 2.17
946 956 5.535333 TCAAGTTCTAAACTCGGTCGATTT 58.465 37.500 0.00 0.00 41.91 2.17
947 957 5.130292 TCAAGTTCTAAACTCGGTCGATT 57.870 39.130 0.00 0.00 41.91 3.34
948 958 4.778534 TCAAGTTCTAAACTCGGTCGAT 57.221 40.909 0.00 0.00 41.91 3.59
949 959 4.778534 ATCAAGTTCTAAACTCGGTCGA 57.221 40.909 0.00 0.00 41.91 4.20
950 960 8.624701 TTAATATCAAGTTCTAAACTCGGTCG 57.375 34.615 0.00 0.00 41.91 4.79
951 961 8.541312 GCTTAATATCAAGTTCTAAACTCGGTC 58.459 37.037 0.00 0.00 41.91 4.79
952 962 7.494952 GGCTTAATATCAAGTTCTAAACTCGGT 59.505 37.037 0.00 0.00 41.91 4.69
953 963 7.041984 GGGCTTAATATCAAGTTCTAAACTCGG 60.042 40.741 0.00 0.00 41.91 4.63
954 964 7.494625 TGGGCTTAATATCAAGTTCTAAACTCG 59.505 37.037 0.00 0.00 41.91 4.18
955 965 8.732746 TGGGCTTAATATCAAGTTCTAAACTC 57.267 34.615 0.00 0.00 41.91 3.01
956 966 7.283354 GCTGGGCTTAATATCAAGTTCTAAACT 59.717 37.037 0.00 0.00 45.46 2.66
957 967 7.418408 GCTGGGCTTAATATCAAGTTCTAAAC 58.582 38.462 0.00 0.00 0.00 2.01
958 968 6.546034 GGCTGGGCTTAATATCAAGTTCTAAA 59.454 38.462 0.00 0.00 0.00 1.85
959 969 6.062095 GGCTGGGCTTAATATCAAGTTCTAA 58.938 40.000 0.00 0.00 0.00 2.10
960 970 5.456186 GGGCTGGGCTTAATATCAAGTTCTA 60.456 44.000 0.00 0.00 0.00 2.10
961 971 4.464947 GGCTGGGCTTAATATCAAGTTCT 58.535 43.478 0.00 0.00 0.00 3.01
962 972 3.570125 GGGCTGGGCTTAATATCAAGTTC 59.430 47.826 0.00 0.00 0.00 3.01
963 973 3.566351 GGGCTGGGCTTAATATCAAGTT 58.434 45.455 0.00 0.00 0.00 2.66
964 974 2.487265 CGGGCTGGGCTTAATATCAAGT 60.487 50.000 0.00 0.00 0.00 3.16
965 975 2.154462 CGGGCTGGGCTTAATATCAAG 58.846 52.381 0.00 0.00 0.00 3.02
966 976 1.771854 TCGGGCTGGGCTTAATATCAA 59.228 47.619 0.00 0.00 0.00 2.57
967 977 1.071699 GTCGGGCTGGGCTTAATATCA 59.928 52.381 0.00 0.00 0.00 2.15
968 978 1.348036 AGTCGGGCTGGGCTTAATATC 59.652 52.381 0.00 0.00 0.00 1.63
969 979 1.348036 GAGTCGGGCTGGGCTTAATAT 59.652 52.381 0.00 0.00 0.00 1.28
970 980 0.756903 GAGTCGGGCTGGGCTTAATA 59.243 55.000 0.00 0.00 0.00 0.98
971 981 1.527370 GAGTCGGGCTGGGCTTAAT 59.473 57.895 0.00 0.00 0.00 1.40
972 982 2.987125 GAGTCGGGCTGGGCTTAA 59.013 61.111 0.00 0.00 0.00 1.85
973 983 3.458163 CGAGTCGGGCTGGGCTTA 61.458 66.667 4.10 0.00 0.00 3.09
985 995 4.057428 ACAGCGCCACTCCGAGTC 62.057 66.667 2.29 0.00 0.00 3.36
986 996 4.363990 CACAGCGCCACTCCGAGT 62.364 66.667 2.29 0.00 0.00 4.18
991 1001 3.426568 GAAGCCACAGCGCCACTC 61.427 66.667 2.29 0.00 46.67 3.51
994 1004 2.796483 ATAACGAAGCCACAGCGCCA 62.796 55.000 2.29 0.00 46.67 5.69
995 1005 0.808453 TATAACGAAGCCACAGCGCC 60.808 55.000 2.29 0.00 46.67 6.53
996 1006 0.300789 GTATAACGAAGCCACAGCGC 59.699 55.000 0.00 0.00 46.67 5.92
997 1007 1.852895 GAGTATAACGAAGCCACAGCG 59.147 52.381 0.00 0.00 46.67 5.18
998 1008 3.117046 GAGAGTATAACGAAGCCACAGC 58.883 50.000 0.00 0.00 40.32 4.40
999 1009 3.181499 ACGAGAGTATAACGAAGCCACAG 60.181 47.826 0.00 0.00 46.88 3.66
1000 1010 2.751259 ACGAGAGTATAACGAAGCCACA 59.249 45.455 0.00 0.00 46.88 4.17
1001 1011 3.417690 ACGAGAGTATAACGAAGCCAC 57.582 47.619 0.00 0.00 46.88 5.01
1020 1030 1.455786 GCGGACGTGCATGTATATCAC 59.544 52.381 12.53 0.00 34.15 3.06
1021 1031 1.604438 GGCGGACGTGCATGTATATCA 60.604 52.381 12.53 0.00 36.28 2.15
1022 1032 1.068474 GGCGGACGTGCATGTATATC 58.932 55.000 12.53 0.00 36.28 1.63
1023 1033 0.666274 CGGCGGACGTGCATGTATAT 60.666 55.000 12.53 0.00 37.93 0.86
1024 1034 1.299544 CGGCGGACGTGCATGTATA 60.300 57.895 12.53 0.00 37.93 1.47
1025 1035 2.584970 CGGCGGACGTGCATGTAT 60.585 61.111 12.53 0.00 37.93 2.29
1035 1045 3.992317 GATAGGAGGGCGGCGGAC 61.992 72.222 9.78 0.00 0.00 4.79
1057 1067 3.799755 GTTGCGTGTGATCGGCCC 61.800 66.667 0.00 0.00 0.00 5.80
1058 1068 3.027170 CTGTTGCGTGTGATCGGCC 62.027 63.158 0.00 0.00 0.00 6.13
1059 1069 2.476051 CTGTTGCGTGTGATCGGC 59.524 61.111 0.00 0.00 0.00 5.54
1060 1070 1.568612 AAGCTGTTGCGTGTGATCGG 61.569 55.000 0.00 0.00 45.42 4.18
1061 1071 0.451628 CAAGCTGTTGCGTGTGATCG 60.452 55.000 0.00 0.00 45.42 3.69
1062 1072 3.373020 CAAGCTGTTGCGTGTGATC 57.627 52.632 0.00 0.00 45.42 2.92
1107 1117 1.194781 ACGACAGGACTGCTCCCATT 61.195 55.000 0.00 0.00 37.25 3.16
1150 1166 0.609957 TTCTTGGTCATGCAGCTGGG 60.610 55.000 17.12 0.00 0.00 4.45
1318 1334 4.849329 CGCGTAGGAGGACGGCAC 62.849 72.222 0.00 0.00 43.13 5.01
1358 1377 3.141488 CGTAGCTCTCGGTGGCCT 61.141 66.667 3.32 0.00 0.00 5.19
1553 1572 1.658686 CTCCTCGCAGGCGTAGAACT 61.659 60.000 13.83 0.00 40.74 3.01
1581 1600 2.150837 GTAGAGTGCGGCGTCGTTC 61.151 63.158 12.58 6.96 38.89 3.95
1885 1917 2.766263 TCGTAGAGATGGCAACCTGAAT 59.234 45.455 0.00 0.00 0.00 2.57
1911 1943 1.018752 CGGTGCATTCCGTCACATCA 61.019 55.000 7.56 0.00 44.77 3.07
2134 2181 1.071567 GACGAACGTAGCACTCTGCC 61.072 60.000 0.00 0.00 46.52 4.85
2143 2190 1.528586 ACGATATCCGGACGAACGTAG 59.471 52.381 18.64 2.98 43.93 3.51
2391 5842 4.436332 GCCCATCAATTTCTTGGTCATTC 58.564 43.478 0.00 0.00 32.95 2.67
2472 5923 4.204012 CCTTGAAGACTAGGATCTCGTCT 58.796 47.826 0.00 6.36 40.51 4.18
2543 5994 1.003580 TGAACCCCATGAAGAGAGCAC 59.996 52.381 0.00 0.00 0.00 4.40
2554 6005 1.295423 CGACGGAGTTGAACCCCAT 59.705 57.895 0.00 0.00 47.00 4.00
2731 6182 2.813754 CCGGTAAATGTAGCCATGGATG 59.186 50.000 18.40 0.00 0.00 3.51
2785 6236 2.674796 AGTATCGCTTCCTGAACCAC 57.325 50.000 0.00 0.00 0.00 4.16
2837 6465 6.149129 AGAAAAGTTCTTGACAAATCCACC 57.851 37.500 0.00 0.00 36.36 4.61
3001 6654 9.620660 AAGGAACGTAAAAACAATGCTAATTAG 57.379 29.630 8.20 8.20 0.00 1.73
3078 6732 1.754803 CCCTAGTATGGACTTCGCACA 59.245 52.381 0.00 0.00 37.10 4.57
3083 6737 3.958798 TGTGTAGCCCTAGTATGGACTTC 59.041 47.826 0.00 0.00 37.10 3.01
3160 6817 6.491383 TGGTAGGAGTCACTAGTAATCTGTT 58.509 40.000 0.00 0.00 0.00 3.16
3167 6824 6.942976 CCAAAATTGGTAGGAGTCACTAGTA 58.057 40.000 3.95 0.00 43.43 1.82
3288 6976 5.233988 AGAGCAAAGTGAGTGAATCTACAC 58.766 41.667 0.00 0.00 40.60 2.90
3303 6991 9.429359 CAATAAGGGACTACATATAGAGCAAAG 57.571 37.037 0.00 0.00 38.49 2.77
3310 6998 8.487028 GGGATTCCAATAAGGGACTACATATAG 58.513 40.741 4.80 0.00 38.49 1.31
3311 6999 8.191110 AGGGATTCCAATAAGGGACTACATATA 58.809 37.037 4.80 0.00 36.46 0.86
3320 7008 8.570470 TGTATTTTTAGGGATTCCAATAAGGGA 58.430 33.333 4.80 0.00 38.24 4.20
3411 7103 2.802057 CGGGTGTAAGAGCCTATTTCGG 60.802 54.545 0.00 0.00 40.45 4.30
3450 7142 8.458951 AGTACTAATTAAAAGGAAGGGAGGAA 57.541 34.615 0.00 0.00 0.00 3.36
3486 7178 3.450817 TCATTCATTCTACCTGCTCCGAA 59.549 43.478 0.00 0.00 0.00 4.30
3504 7196 1.539929 GCTGCTCCGCTGACTATCATT 60.540 52.381 0.00 0.00 0.00 2.57
3541 7233 7.552050 AAAGAAGGAGTCTATGCTATGCTAT 57.448 36.000 0.00 0.00 34.56 2.97
3561 7253 5.052693 AGTATGGATGGCATTGCTAAAGA 57.947 39.130 8.82 0.00 0.00 2.52
3591 7283 3.222603 GTTGGTTCTTCCCAGTTGATGT 58.777 45.455 0.00 0.00 35.49 3.06
3599 7291 5.512942 TGATATCTTGTTGGTTCTTCCCA 57.487 39.130 3.98 0.00 34.77 4.37
3632 7324 4.462834 AGTTCAATTTTCCGGAGAATTCCC 59.537 41.667 25.69 17.10 40.67 3.97
3668 7360 7.510630 AGCGCACGAATATATAAGAATTTCAC 58.489 34.615 11.47 0.00 0.00 3.18
3687 7379 2.050985 GTGGACAGCAAAGCGCAC 60.051 61.111 11.47 0.00 46.13 5.34
3721 7413 6.010850 ACTGTACTCTAGAACAGAACCATGA 58.989 40.000 24.83 0.00 44.79 3.07
3783 7475 5.560724 TCATGTGAAAAAGGGAGGTAAGAG 58.439 41.667 0.00 0.00 0.00 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.