Multiple sequence alignment - TraesCS4A01G321000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G321000 chr4A 100.000 2840 0 0 1 2840 609184530 609181691 0.000000e+00 5245.0
1 TraesCS4A01G321000 chr5D 93.539 1424 69 12 672 2087 563120863 563122271 0.000000e+00 2098.0
2 TraesCS4A01G321000 chr5B 90.285 1441 80 30 672 2079 705518148 705519561 0.000000e+00 1831.0
3 TraesCS4A01G321000 chr5B 90.716 377 20 6 2138 2509 705533728 705534094 3.290000e-134 488.0
4 TraesCS4A01G321000 chr5B 89.683 378 26 6 2138 2512 711055481 711055114 1.190000e-128 470.0
5 TraesCS4A01G321000 chr5B 88.462 312 8 7 2512 2795 711054405 711054094 4.500000e-93 351.0
6 TraesCS4A01G321000 chr5B 92.593 243 8 2 2563 2795 705534640 705534882 9.740000e-90 340.0
7 TraesCS4A01G321000 chr5B 86.765 136 4 6 2006 2139 711058627 711058504 3.820000e-29 139.0
8 TraesCS4A01G321000 chr5B 86.765 136 4 6 2006 2139 711064613 711064736 3.820000e-29 139.0
9 TraesCS4A01G321000 chr5B 97.059 68 2 0 315 382 705518062 705518129 6.430000e-22 115.0
10 TraesCS4A01G321000 chr5B 96.078 51 2 0 2512 2562 705534564 705534614 1.810000e-12 84.2
11 TraesCS4A01G321000 chr5B 97.727 44 1 0 2797 2840 711054002 711053959 3.030000e-10 76.8
12 TraesCS4A01G321000 chr3A 98.374 246 4 0 434 679 528986552 528986797 1.560000e-117 433.0
13 TraesCS4A01G321000 chr3A 95.420 262 12 0 419 680 715767404 715767665 4.380000e-113 418.0
14 TraesCS4A01G321000 chr3A 96.787 249 7 1 433 681 730881080 730880833 5.660000e-112 414.0
15 TraesCS4A01G321000 chr3A 95.331 257 12 0 434 690 345981349 345981605 2.630000e-110 409.0
16 TraesCS4A01G321000 chr6A 96.887 257 8 0 427 683 258132254 258131998 5.620000e-117 431.0
17 TraesCS4A01G321000 chr6A 95.785 261 8 3 422 679 592470021 592470281 4.380000e-113 418.0
18 TraesCS4A01G321000 chr7A 90.966 321 22 5 1 318 211727590 211727906 2.620000e-115 425.0
19 TraesCS4A01G321000 chr7A 97.154 246 7 0 434 679 393692107 393691862 1.570000e-112 416.0
20 TraesCS4A01G321000 chr7A 96.787 249 8 0 431 679 663428247 663427999 1.570000e-112 416.0
21 TraesCS4A01G321000 chr3B 90.312 320 26 3 1 318 678390338 678390022 5.660000e-112 414.0
22 TraesCS4A01G321000 chr5A 96.341 246 9 0 434 679 5182794 5183039 3.410000e-109 405.0
23 TraesCS4A01G321000 chr7B 88.125 320 22 7 1 318 658196631 658196936 1.610000e-97 366.0
24 TraesCS4A01G321000 chr1B 83.180 327 41 4 4 319 501679617 501679294 1.290000e-73 287.0
25 TraesCS4A01G321000 chr2B 88.435 147 12 3 174 318 410064766 410064909 3.760000e-39 172.0
26 TraesCS4A01G321000 chr2B 100.000 28 0 0 2429 2456 337075297 337075270 5.000000e-03 52.8
27 TraesCS4A01G321000 chr1A 78.740 127 23 4 2330 2456 535433794 535433916 6.520000e-12 82.4
28 TraesCS4A01G321000 chr1A 100.000 28 0 0 2429 2456 585828675 585828702 5.000000e-03 52.8
29 TraesCS4A01G321000 chr3D 87.719 57 5 2 2407 2463 580085758 580085704 6.570000e-07 65.8
30 TraesCS4A01G321000 chr2D 86.792 53 6 1 2405 2456 284529376 284529428 1.100000e-04 58.4
31 TraesCS4A01G321000 chr6D 100.000 28 0 0 2429 2456 69940993 69940966 5.000000e-03 52.8
32 TraesCS4A01G321000 chr6B 100.000 28 0 0 2429 2456 144959608 144959581 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G321000 chr4A 609181691 609184530 2839 True 5245.000000 5245 100.00000 1 2840 1 chr4A.!!$R1 2839
1 TraesCS4A01G321000 chr5D 563120863 563122271 1408 False 2098.000000 2098 93.53900 672 2087 1 chr5D.!!$F1 1415
2 TraesCS4A01G321000 chr5B 705518062 705519561 1499 False 973.000000 1831 93.67200 315 2079 2 chr5B.!!$F2 1764
3 TraesCS4A01G321000 chr5B 705533728 705534882 1154 False 304.066667 488 93.12900 2138 2795 3 chr5B.!!$F3 657
4 TraesCS4A01G321000 chr5B 711053959 711058627 4668 True 259.200000 470 90.65925 2006 2840 4 chr5B.!!$R1 834

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
140 141 0.026803 CGCTCTTGCCTAATCAACGC 59.973 55.0 0.0 0.0 35.36 4.84 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2109 2145 0.037139 CGTACCATTGGACCGGAACA 60.037 55.0 9.46 2.96 0.0 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.013842 GGGACAAGGTAAACTTTCAATCAG 57.986 41.667 0.00 0.00 37.29 2.90
24 25 5.768164 GGGACAAGGTAAACTTTCAATCAGA 59.232 40.000 0.00 0.00 37.29 3.27
25 26 6.072452 GGGACAAGGTAAACTTTCAATCAGAG 60.072 42.308 0.00 0.00 37.29 3.35
26 27 6.319141 ACAAGGTAAACTTTCAATCAGAGC 57.681 37.500 0.00 0.00 37.29 4.09
27 28 5.049405 ACAAGGTAAACTTTCAATCAGAGCG 60.049 40.000 0.00 0.00 37.29 5.03
28 29 3.437049 AGGTAAACTTTCAATCAGAGCGC 59.563 43.478 0.00 0.00 0.00 5.92
29 30 3.437049 GGTAAACTTTCAATCAGAGCGCT 59.563 43.478 11.27 11.27 0.00 5.92
30 31 3.549299 AAACTTTCAATCAGAGCGCTG 57.451 42.857 18.48 11.71 43.67 5.18
31 32 2.175878 ACTTTCAATCAGAGCGCTGT 57.824 45.000 18.48 8.56 42.84 4.40
32 33 2.498167 ACTTTCAATCAGAGCGCTGTT 58.502 42.857 18.48 6.26 42.84 3.16
33 34 3.664107 ACTTTCAATCAGAGCGCTGTTA 58.336 40.909 18.48 1.22 42.84 2.41
34 35 3.433615 ACTTTCAATCAGAGCGCTGTTAC 59.566 43.478 18.48 0.00 42.84 2.50
35 36 2.741759 TCAATCAGAGCGCTGTTACA 57.258 45.000 18.48 0.00 42.84 2.41
36 37 3.038788 TCAATCAGAGCGCTGTTACAA 57.961 42.857 18.48 0.00 42.84 2.41
37 38 3.398406 TCAATCAGAGCGCTGTTACAAA 58.602 40.909 18.48 0.00 42.84 2.83
38 39 3.433274 TCAATCAGAGCGCTGTTACAAAG 59.567 43.478 18.48 0.00 42.84 2.77
39 40 2.812358 TCAGAGCGCTGTTACAAAGA 57.188 45.000 18.48 0.00 42.84 2.52
40 41 2.677199 TCAGAGCGCTGTTACAAAGAG 58.323 47.619 18.48 0.00 42.84 2.85
41 42 2.296190 TCAGAGCGCTGTTACAAAGAGA 59.704 45.455 18.48 0.00 42.84 3.10
42 43 3.059884 CAGAGCGCTGTTACAAAGAGAA 58.940 45.455 18.48 0.00 37.37 2.87
43 44 3.494626 CAGAGCGCTGTTACAAAGAGAAA 59.505 43.478 18.48 0.00 37.37 2.52
44 45 4.153117 CAGAGCGCTGTTACAAAGAGAAAT 59.847 41.667 18.48 0.00 37.37 2.17
45 46 5.348724 CAGAGCGCTGTTACAAAGAGAAATA 59.651 40.000 18.48 0.00 37.37 1.40
46 47 5.932303 AGAGCGCTGTTACAAAGAGAAATAA 59.068 36.000 18.48 0.00 0.00 1.40
47 48 6.426937 AGAGCGCTGTTACAAAGAGAAATAAA 59.573 34.615 18.48 0.00 0.00 1.40
48 49 7.119846 AGAGCGCTGTTACAAAGAGAAATAAAT 59.880 33.333 18.48 0.00 0.00 1.40
49 50 7.244192 AGCGCTGTTACAAAGAGAAATAAATC 58.756 34.615 10.39 0.00 0.00 2.17
50 51 7.021196 GCGCTGTTACAAAGAGAAATAAATCA 58.979 34.615 0.00 0.00 0.00 2.57
51 52 7.217070 GCGCTGTTACAAAGAGAAATAAATCAG 59.783 37.037 0.00 0.00 0.00 2.90
52 53 7.217070 CGCTGTTACAAAGAGAAATAAATCAGC 59.783 37.037 0.00 0.00 38.67 4.26
53 54 8.023128 GCTGTTACAAAGAGAAATAAATCAGCA 58.977 33.333 0.00 0.00 40.73 4.41
61 62 9.573133 AAAGAGAAATAAATCAGCATTTAACCG 57.427 29.630 0.00 0.00 37.87 4.44
62 63 7.196331 AGAGAAATAAATCAGCATTTAACCGC 58.804 34.615 0.00 0.00 37.87 5.68
63 64 7.067494 AGAGAAATAAATCAGCATTTAACCGCT 59.933 33.333 0.00 0.00 37.87 5.52
64 65 8.220755 AGAAATAAATCAGCATTTAACCGCTA 57.779 30.769 0.00 0.00 37.87 4.26
65 66 8.345565 AGAAATAAATCAGCATTTAACCGCTAG 58.654 33.333 0.00 0.00 37.87 3.42
66 67 7.568199 AATAAATCAGCATTTAACCGCTAGT 57.432 32.000 0.00 0.00 37.87 2.57
67 68 5.897377 AAATCAGCATTTAACCGCTAGTT 57.103 34.783 0.00 0.00 42.83 2.24
68 69 6.995511 AAATCAGCATTTAACCGCTAGTTA 57.004 33.333 0.00 0.00 40.05 2.24
69 70 7.568199 AAATCAGCATTTAACCGCTAGTTAT 57.432 32.000 0.00 0.00 40.62 1.89
70 71 7.568199 AATCAGCATTTAACCGCTAGTTATT 57.432 32.000 0.00 0.00 40.62 1.40
71 72 8.671384 AATCAGCATTTAACCGCTAGTTATTA 57.329 30.769 0.00 0.00 40.62 0.98
72 73 7.709269 TCAGCATTTAACCGCTAGTTATTAG 57.291 36.000 0.00 0.00 40.62 1.73
73 74 6.704493 TCAGCATTTAACCGCTAGTTATTAGG 59.296 38.462 0.00 0.00 40.62 2.69
74 75 6.704493 CAGCATTTAACCGCTAGTTATTAGGA 59.296 38.462 0.00 0.00 40.62 2.94
75 76 7.387948 CAGCATTTAACCGCTAGTTATTAGGAT 59.612 37.037 0.00 0.00 40.62 3.24
76 77 7.387948 AGCATTTAACCGCTAGTTATTAGGATG 59.612 37.037 0.00 0.00 40.62 3.51
77 78 7.519002 CATTTAACCGCTAGTTATTAGGATGC 58.481 38.462 0.00 0.00 40.62 3.91
78 79 3.679824 ACCGCTAGTTATTAGGATGCC 57.320 47.619 0.00 0.00 0.00 4.40
79 80 3.240302 ACCGCTAGTTATTAGGATGCCT 58.760 45.455 0.00 0.00 37.71 4.75
80 81 3.646637 ACCGCTAGTTATTAGGATGCCTT 59.353 43.478 0.00 0.00 34.61 4.35
81 82 4.102681 ACCGCTAGTTATTAGGATGCCTTT 59.897 41.667 0.00 0.00 34.61 3.11
82 83 5.063880 CCGCTAGTTATTAGGATGCCTTTT 58.936 41.667 0.00 0.00 34.61 2.27
83 84 5.179555 CCGCTAGTTATTAGGATGCCTTTTC 59.820 44.000 0.00 0.00 34.61 2.29
84 85 5.758296 CGCTAGTTATTAGGATGCCTTTTCA 59.242 40.000 0.00 0.00 34.61 2.69
85 86 6.073548 CGCTAGTTATTAGGATGCCTTTTCAG 60.074 42.308 0.00 0.00 34.61 3.02
86 87 6.293680 GCTAGTTATTAGGATGCCTTTTCAGC 60.294 42.308 0.00 0.00 34.61 4.26
87 88 5.760131 AGTTATTAGGATGCCTTTTCAGCT 58.240 37.500 0.00 0.00 34.61 4.24
88 89 5.825151 AGTTATTAGGATGCCTTTTCAGCTC 59.175 40.000 0.00 0.00 34.61 4.09
89 90 4.516652 ATTAGGATGCCTTTTCAGCTCT 57.483 40.909 0.00 0.00 34.61 4.09
90 91 5.636903 ATTAGGATGCCTTTTCAGCTCTA 57.363 39.130 0.00 0.00 34.61 2.43
91 92 3.274095 AGGATGCCTTTTCAGCTCTAC 57.726 47.619 0.00 0.00 0.00 2.59
92 93 2.573462 AGGATGCCTTTTCAGCTCTACA 59.427 45.455 0.00 0.00 0.00 2.74
93 94 3.201708 AGGATGCCTTTTCAGCTCTACAT 59.798 43.478 0.00 0.00 0.00 2.29
94 95 3.314635 GGATGCCTTTTCAGCTCTACATG 59.685 47.826 0.00 0.00 0.00 3.21
95 96 2.086869 TGCCTTTTCAGCTCTACATGC 58.913 47.619 0.00 0.00 0.00 4.06
96 97 2.086869 GCCTTTTCAGCTCTACATGCA 58.913 47.619 0.00 0.00 0.00 3.96
97 98 2.097142 GCCTTTTCAGCTCTACATGCAG 59.903 50.000 0.00 0.00 0.00 4.41
98 99 2.681848 CCTTTTCAGCTCTACATGCAGG 59.318 50.000 0.00 0.00 0.00 4.85
99 100 1.742761 TTTCAGCTCTACATGCAGGC 58.257 50.000 0.00 0.00 0.00 4.85
100 101 0.107508 TTCAGCTCTACATGCAGGCC 60.108 55.000 0.00 0.00 0.00 5.19
101 102 1.525535 CAGCTCTACATGCAGGCCC 60.526 63.158 0.00 0.00 0.00 5.80
102 103 2.590007 GCTCTACATGCAGGCCCG 60.590 66.667 0.00 0.00 0.00 6.13
103 104 2.590007 CTCTACATGCAGGCCCGC 60.590 66.667 3.21 3.21 0.00 6.13
104 105 4.175337 TCTACATGCAGGCCCGCC 62.175 66.667 8.88 0.00 0.00 6.13
106 107 2.766229 TACATGCAGGCCCGCCTA 60.766 61.111 8.88 0.00 46.28 3.93
107 108 2.324014 CTACATGCAGGCCCGCCTAA 62.324 60.000 8.88 0.00 46.28 2.69
108 109 1.705002 TACATGCAGGCCCGCCTAAT 61.705 55.000 8.88 2.59 46.28 1.73
109 110 1.829533 CATGCAGGCCCGCCTAATT 60.830 57.895 8.88 0.00 46.28 1.40
110 111 1.829533 ATGCAGGCCCGCCTAATTG 60.830 57.895 8.88 0.00 46.28 2.32
111 112 3.904479 GCAGGCCCGCCTAATTGC 61.904 66.667 8.18 4.87 46.28 3.56
112 113 2.440065 CAGGCCCGCCTAATTGCA 60.440 61.111 8.18 0.00 46.28 4.08
113 114 1.829533 CAGGCCCGCCTAATTGCAT 60.830 57.895 8.18 0.00 46.28 3.96
114 115 1.829533 AGGCCCGCCTAATTGCATG 60.830 57.895 6.41 0.00 46.14 4.06
115 116 2.127232 GGCCCGCCTAATTGCATGT 61.127 57.895 0.00 0.00 0.00 3.21
116 117 1.066257 GCCCGCCTAATTGCATGTG 59.934 57.895 0.00 0.00 0.00 3.21
117 118 1.383456 GCCCGCCTAATTGCATGTGA 61.383 55.000 0.00 0.00 0.00 3.58
118 119 1.102154 CCCGCCTAATTGCATGTGAA 58.898 50.000 0.00 0.00 0.00 3.18
119 120 1.476085 CCCGCCTAATTGCATGTGAAA 59.524 47.619 0.00 0.00 0.00 2.69
120 121 2.529151 CCGCCTAATTGCATGTGAAAC 58.471 47.619 0.00 0.00 37.35 2.78
121 122 2.529151 CGCCTAATTGCATGTGAAACC 58.471 47.619 0.00 0.00 34.36 3.27
122 123 2.529151 GCCTAATTGCATGTGAAACCG 58.471 47.619 0.00 0.00 34.36 4.44
123 124 2.529151 CCTAATTGCATGTGAAACCGC 58.471 47.619 0.00 0.00 34.36 5.68
124 125 2.164219 CCTAATTGCATGTGAAACCGCT 59.836 45.455 0.00 0.00 35.50 5.52
125 126 2.352503 AATTGCATGTGAAACCGCTC 57.647 45.000 0.00 0.00 35.50 5.03
126 127 1.538047 ATTGCATGTGAAACCGCTCT 58.462 45.000 0.00 0.00 35.50 4.09
127 128 1.317613 TTGCATGTGAAACCGCTCTT 58.682 45.000 0.00 0.00 35.50 2.85
128 129 0.592637 TGCATGTGAAACCGCTCTTG 59.407 50.000 0.00 0.00 35.50 3.02
129 130 0.730494 GCATGTGAAACCGCTCTTGC 60.730 55.000 0.00 0.00 34.36 4.01
130 131 0.109597 CATGTGAAACCGCTCTTGCC 60.110 55.000 0.00 0.00 34.36 4.52
131 132 0.250901 ATGTGAAACCGCTCTTGCCT 60.251 50.000 0.00 0.00 34.36 4.75
132 133 0.394938 TGTGAAACCGCTCTTGCCTA 59.605 50.000 0.00 0.00 34.36 3.93
133 134 1.202710 TGTGAAACCGCTCTTGCCTAA 60.203 47.619 0.00 0.00 34.36 2.69
134 135 2.084546 GTGAAACCGCTCTTGCCTAAT 58.915 47.619 0.00 0.00 35.36 1.73
135 136 2.096013 GTGAAACCGCTCTTGCCTAATC 59.904 50.000 0.00 0.00 35.36 1.75
136 137 2.290008 TGAAACCGCTCTTGCCTAATCA 60.290 45.455 0.00 0.00 35.36 2.57
137 138 2.489938 AACCGCTCTTGCCTAATCAA 57.510 45.000 0.00 0.00 35.36 2.57
138 139 1.739067 ACCGCTCTTGCCTAATCAAC 58.261 50.000 0.00 0.00 35.36 3.18
139 140 0.652592 CCGCTCTTGCCTAATCAACG 59.347 55.000 0.00 0.00 35.36 4.10
140 141 0.026803 CGCTCTTGCCTAATCAACGC 59.973 55.000 0.00 0.00 35.36 4.84
141 142 1.086696 GCTCTTGCCTAATCAACGCA 58.913 50.000 0.00 0.00 0.00 5.24
142 143 1.202076 GCTCTTGCCTAATCAACGCAC 60.202 52.381 0.00 0.00 30.84 5.34
143 144 2.076100 CTCTTGCCTAATCAACGCACA 58.924 47.619 0.00 0.00 30.84 4.57
144 145 2.076100 TCTTGCCTAATCAACGCACAG 58.924 47.619 0.00 0.00 30.84 3.66
145 146 1.131126 CTTGCCTAATCAACGCACAGG 59.869 52.381 0.00 0.00 30.84 4.00
146 147 1.429423 GCCTAATCAACGCACAGGC 59.571 57.895 0.00 0.00 44.54 4.85
147 148 1.026718 GCCTAATCAACGCACAGGCT 61.027 55.000 3.69 0.00 46.70 4.58
148 149 1.009829 CCTAATCAACGCACAGGCTC 58.990 55.000 0.00 0.00 38.10 4.70
149 150 0.647410 CTAATCAACGCACAGGCTCG 59.353 55.000 0.00 0.00 38.10 5.03
150 151 0.037697 TAATCAACGCACAGGCTCGT 60.038 50.000 0.00 0.00 41.06 4.18
153 154 3.649986 AACGCACAGGCTCGTTGC 61.650 61.111 11.10 6.89 45.68 4.17
154 155 4.908687 ACGCACAGGCTCGTTGCA 62.909 61.111 11.61 0.00 45.15 4.08
155 156 3.425713 CGCACAGGCTCGTTGCAT 61.426 61.111 11.61 0.00 45.15 3.96
159 160 2.483745 CAGGCTCGTTGCATGCAG 59.516 61.111 21.50 10.69 46.51 4.41
160 161 2.749044 AGGCTCGTTGCATGCAGG 60.749 61.111 21.50 16.71 45.15 4.85
161 162 3.818787 GGCTCGTTGCATGCAGGG 61.819 66.667 21.50 16.34 45.15 4.45
162 163 3.818787 GCTCGTTGCATGCAGGGG 61.819 66.667 21.50 17.50 42.31 4.79
163 164 2.360350 CTCGTTGCATGCAGGGGT 60.360 61.111 21.50 0.00 0.00 4.95
164 165 1.973281 CTCGTTGCATGCAGGGGTT 60.973 57.895 21.50 0.00 0.00 4.11
165 166 1.526575 CTCGTTGCATGCAGGGGTTT 61.527 55.000 21.50 0.00 0.00 3.27
166 167 1.112315 TCGTTGCATGCAGGGGTTTT 61.112 50.000 21.50 0.00 0.00 2.43
167 168 0.667184 CGTTGCATGCAGGGGTTTTC 60.667 55.000 21.50 4.66 0.00 2.29
168 169 0.392336 GTTGCATGCAGGGGTTTTCA 59.608 50.000 21.50 0.00 0.00 2.69
169 170 0.392336 TTGCATGCAGGGGTTTTCAC 59.608 50.000 21.50 0.00 0.00 3.18
170 171 1.080569 GCATGCAGGGGTTTTCACG 60.081 57.895 14.21 0.00 0.00 4.35
171 172 1.586028 CATGCAGGGGTTTTCACGG 59.414 57.895 0.00 0.00 0.00 4.94
172 173 0.893270 CATGCAGGGGTTTTCACGGA 60.893 55.000 0.00 0.00 0.00 4.69
173 174 0.609131 ATGCAGGGGTTTTCACGGAG 60.609 55.000 0.00 0.00 0.00 4.63
175 176 0.035739 GCAGGGGTTTTCACGGAGTA 59.964 55.000 0.00 0.00 41.61 2.59
176 177 1.944430 GCAGGGGTTTTCACGGAGTAG 60.944 57.143 0.00 0.00 41.61 2.57
177 178 0.981943 AGGGGTTTTCACGGAGTAGG 59.018 55.000 0.00 0.00 41.61 3.18
178 179 0.978907 GGGGTTTTCACGGAGTAGGA 59.021 55.000 0.00 0.00 41.61 2.94
179 180 1.348696 GGGGTTTTCACGGAGTAGGAA 59.651 52.381 0.00 0.00 41.61 3.36
180 181 2.420642 GGGTTTTCACGGAGTAGGAAC 58.579 52.381 0.00 0.00 41.61 3.62
181 182 2.064014 GGTTTTCACGGAGTAGGAACG 58.936 52.381 0.00 0.00 41.61 3.95
182 183 2.288395 GGTTTTCACGGAGTAGGAACGA 60.288 50.000 0.00 0.00 41.61 3.85
183 184 2.985139 GTTTTCACGGAGTAGGAACGAG 59.015 50.000 0.00 0.00 41.61 4.18
184 185 1.171308 TTCACGGAGTAGGAACGAGG 58.829 55.000 0.00 0.00 41.61 4.63
185 186 0.679002 TCACGGAGTAGGAACGAGGG 60.679 60.000 0.00 0.00 41.61 4.30
186 187 0.679002 CACGGAGTAGGAACGAGGGA 60.679 60.000 0.00 0.00 41.61 4.20
187 188 0.038744 ACGGAGTAGGAACGAGGGAA 59.961 55.000 0.00 0.00 41.94 3.97
188 189 1.341778 ACGGAGTAGGAACGAGGGAAT 60.342 52.381 0.00 0.00 41.94 3.01
189 190 1.755380 CGGAGTAGGAACGAGGGAATT 59.245 52.381 0.00 0.00 0.00 2.17
190 191 2.481449 CGGAGTAGGAACGAGGGAATTG 60.481 54.545 0.00 0.00 0.00 2.32
191 192 2.764572 GGAGTAGGAACGAGGGAATTGA 59.235 50.000 0.00 0.00 0.00 2.57
192 193 3.181474 GGAGTAGGAACGAGGGAATTGAG 60.181 52.174 0.00 0.00 0.00 3.02
193 194 2.766828 AGTAGGAACGAGGGAATTGAGG 59.233 50.000 0.00 0.00 0.00 3.86
194 195 0.912486 AGGAACGAGGGAATTGAGGG 59.088 55.000 0.00 0.00 0.00 4.30
195 196 0.107165 GGAACGAGGGAATTGAGGGG 60.107 60.000 0.00 0.00 0.00 4.79
196 197 0.107165 GAACGAGGGAATTGAGGGGG 60.107 60.000 0.00 0.00 0.00 5.40
197 198 0.549169 AACGAGGGAATTGAGGGGGA 60.549 55.000 0.00 0.00 0.00 4.81
198 199 0.549169 ACGAGGGAATTGAGGGGGAA 60.549 55.000 0.00 0.00 0.00 3.97
199 200 0.181350 CGAGGGAATTGAGGGGGAAG 59.819 60.000 0.00 0.00 0.00 3.46
200 201 1.596496 GAGGGAATTGAGGGGGAAGA 58.404 55.000 0.00 0.00 0.00 2.87
201 202 1.492599 GAGGGAATTGAGGGGGAAGAG 59.507 57.143 0.00 0.00 0.00 2.85
202 203 1.082879 AGGGAATTGAGGGGGAAGAGA 59.917 52.381 0.00 0.00 0.00 3.10
203 204 1.923148 GGGAATTGAGGGGGAAGAGAA 59.077 52.381 0.00 0.00 0.00 2.87
204 205 2.357257 GGGAATTGAGGGGGAAGAGAAC 60.357 54.545 0.00 0.00 0.00 3.01
205 206 2.357257 GGAATTGAGGGGGAAGAGAACC 60.357 54.545 0.00 0.00 0.00 3.62
206 207 1.299939 ATTGAGGGGGAAGAGAACCC 58.700 55.000 0.00 0.00 46.59 4.11
209 210 3.310652 GGGGGAAGAGAACCCTCG 58.689 66.667 0.00 0.00 46.51 4.63
210 211 1.612739 GGGGGAAGAGAACCCTCGT 60.613 63.158 0.00 0.00 46.51 4.18
211 212 1.597461 GGGGAAGAGAACCCTCGTG 59.403 63.158 0.00 0.00 46.03 4.35
212 213 0.903454 GGGGAAGAGAACCCTCGTGA 60.903 60.000 0.00 0.00 46.03 4.35
213 214 0.974383 GGGAAGAGAACCCTCGTGAA 59.026 55.000 0.00 0.00 44.08 3.18
214 215 1.337917 GGGAAGAGAACCCTCGTGAAC 60.338 57.143 0.00 0.00 44.08 3.18
215 216 1.669211 GGAAGAGAACCCTCGTGAACG 60.669 57.143 0.00 0.00 44.08 3.95
224 225 2.599281 TCGTGAACGAGGCTGGGA 60.599 61.111 0.50 0.00 44.22 4.37
225 226 2.125912 CGTGAACGAGGCTGGGAG 60.126 66.667 0.51 0.00 43.02 4.30
226 227 2.266055 GTGAACGAGGCTGGGAGG 59.734 66.667 0.51 0.00 0.00 4.30
227 228 3.003173 TGAACGAGGCTGGGAGGG 61.003 66.667 0.51 0.00 0.00 4.30
228 229 4.475135 GAACGAGGCTGGGAGGGC 62.475 72.222 0.51 0.00 0.00 5.19
231 232 4.247380 CGAGGCTGGGAGGGCATC 62.247 72.222 0.00 0.00 37.18 3.91
232 233 3.092511 GAGGCTGGGAGGGCATCA 61.093 66.667 0.08 0.00 39.79 3.07
233 234 2.614969 AGGCTGGGAGGGCATCAA 60.615 61.111 0.08 0.00 0.00 2.57
234 235 2.215451 GAGGCTGGGAGGGCATCAAA 62.215 60.000 0.08 0.00 39.79 2.69
235 236 1.755783 GGCTGGGAGGGCATCAAAG 60.756 63.158 0.08 0.00 0.00 2.77
236 237 1.304282 GCTGGGAGGGCATCAAAGA 59.696 57.895 0.08 0.00 0.00 2.52
237 238 0.750911 GCTGGGAGGGCATCAAAGAG 60.751 60.000 0.08 0.00 0.00 2.85
238 239 0.914644 CTGGGAGGGCATCAAAGAGA 59.085 55.000 0.08 0.00 0.00 3.10
239 240 1.283029 CTGGGAGGGCATCAAAGAGAA 59.717 52.381 0.08 0.00 0.00 2.87
240 241 1.925255 TGGGAGGGCATCAAAGAGAAT 59.075 47.619 0.08 0.00 0.00 2.40
241 242 2.312741 TGGGAGGGCATCAAAGAGAATT 59.687 45.455 0.08 0.00 0.00 2.17
242 243 3.245730 TGGGAGGGCATCAAAGAGAATTT 60.246 43.478 0.08 0.00 0.00 1.82
243 244 4.017591 TGGGAGGGCATCAAAGAGAATTTA 60.018 41.667 0.08 0.00 0.00 1.40
244 245 4.956075 GGGAGGGCATCAAAGAGAATTTAA 59.044 41.667 0.08 0.00 0.00 1.52
245 246 5.600069 GGGAGGGCATCAAAGAGAATTTAAT 59.400 40.000 0.08 0.00 0.00 1.40
246 247 6.462067 GGGAGGGCATCAAAGAGAATTTAATG 60.462 42.308 0.08 0.00 0.00 1.90
247 248 6.097412 GGAGGGCATCAAAGAGAATTTAATGT 59.903 38.462 0.08 0.00 0.00 2.71
248 249 7.364144 GGAGGGCATCAAAGAGAATTTAATGTT 60.364 37.037 0.08 0.00 0.00 2.71
249 250 7.550712 AGGGCATCAAAGAGAATTTAATGTTC 58.449 34.615 0.00 0.00 0.00 3.18
250 251 6.758416 GGGCATCAAAGAGAATTTAATGTTCC 59.242 38.462 0.00 0.00 0.00 3.62
251 252 7.322664 GGCATCAAAGAGAATTTAATGTTCCA 58.677 34.615 0.00 0.00 0.00 3.53
252 253 7.276438 GGCATCAAAGAGAATTTAATGTTCCAC 59.724 37.037 0.00 0.00 0.00 4.02
253 254 7.008628 GCATCAAAGAGAATTTAATGTTCCACG 59.991 37.037 0.00 0.00 0.00 4.94
254 255 6.378582 TCAAAGAGAATTTAATGTTCCACGC 58.621 36.000 0.00 0.00 0.00 5.34
255 256 4.965119 AGAGAATTTAATGTTCCACGCC 57.035 40.909 0.00 0.00 0.00 5.68
256 257 4.331968 AGAGAATTTAATGTTCCACGCCA 58.668 39.130 0.00 0.00 0.00 5.69
257 258 4.764823 AGAGAATTTAATGTTCCACGCCAA 59.235 37.500 0.00 0.00 0.00 4.52
258 259 5.059404 AGAATTTAATGTTCCACGCCAAG 57.941 39.130 0.00 0.00 0.00 3.61
259 260 3.866883 ATTTAATGTTCCACGCCAAGG 57.133 42.857 0.00 0.00 0.00 3.61
260 261 2.279935 TTAATGTTCCACGCCAAGGT 57.720 45.000 0.00 0.00 0.00 3.50
261 262 2.279935 TAATGTTCCACGCCAAGGTT 57.720 45.000 0.00 0.00 0.00 3.50
262 263 1.408969 AATGTTCCACGCCAAGGTTT 58.591 45.000 0.00 0.00 0.00 3.27
263 264 1.408969 ATGTTCCACGCCAAGGTTTT 58.591 45.000 0.00 0.00 0.00 2.43
264 265 0.457851 TGTTCCACGCCAAGGTTTTG 59.542 50.000 0.00 0.00 0.00 2.44
310 311 7.818997 ATGATTTACACATCTACTAGACGGA 57.181 36.000 0.00 0.00 0.00 4.69
311 312 7.260558 TGATTTACACATCTACTAGACGGAG 57.739 40.000 0.00 0.00 0.00 4.63
312 313 7.052248 TGATTTACACATCTACTAGACGGAGA 58.948 38.462 0.00 0.00 0.00 3.71
313 314 6.922247 TTTACACATCTACTAGACGGAGAG 57.078 41.667 0.00 0.00 0.00 3.20
322 323 6.364701 TCTACTAGACGGAGAGAGTACTAGT 58.635 44.000 0.00 0.00 41.73 2.57
356 357 8.023706 GGACTCCTTTGTTATTTCTTTTAGCTG 58.976 37.037 0.00 0.00 0.00 4.24
382 383 6.014499 ACGGATTCCTTTCCTTCGATACATAT 60.014 38.462 0.30 0.00 33.30 1.78
383 384 7.177921 ACGGATTCCTTTCCTTCGATACATATA 59.822 37.037 0.30 0.00 33.30 0.86
474 475 3.922171 CCTAAAGAGGCAGATCCAACT 57.078 47.619 0.00 0.00 35.54 3.16
475 476 3.539604 CCTAAAGAGGCAGATCCAACTG 58.460 50.000 0.00 0.00 35.54 3.16
476 477 3.198635 CCTAAAGAGGCAGATCCAACTGA 59.801 47.826 0.00 0.00 39.35 3.41
477 478 4.141528 CCTAAAGAGGCAGATCCAACTGAT 60.142 45.833 0.00 0.00 39.35 2.90
478 479 5.972256 CCTAAAGAGGCAGATCCAACTGATC 60.972 48.000 0.00 0.00 42.30 2.92
479 480 8.098422 CCTAAAGAGGCAGATCCAACTGATCT 62.098 46.154 0.00 0.00 46.61 2.75
480 481 9.775921 CCTAAAGAGGCAGATCCAACTGATCTC 62.776 48.148 1.80 0.00 45.68 2.75
484 485 3.297391 GATCCAACTGATCTCGGCC 57.703 57.895 0.00 0.00 45.46 6.13
485 486 0.465705 GATCCAACTGATCTCGGCCA 59.534 55.000 2.24 0.00 45.46 5.36
486 487 1.071385 GATCCAACTGATCTCGGCCAT 59.929 52.381 2.24 0.00 45.46 4.40
487 488 0.465705 TCCAACTGATCTCGGCCATC 59.534 55.000 2.24 0.00 0.00 3.51
488 489 0.877649 CCAACTGATCTCGGCCATCG 60.878 60.000 2.24 0.00 40.90 3.84
489 490 0.103026 CAACTGATCTCGGCCATCGA 59.897 55.000 2.24 0.00 46.77 3.59
496 497 3.065306 TCGGCCATCGAACCAAGT 58.935 55.556 2.24 0.00 45.86 3.16
497 498 1.079405 TCGGCCATCGAACCAAGTC 60.079 57.895 2.24 0.00 45.86 3.01
498 499 1.375396 CGGCCATCGAACCAAGTCA 60.375 57.895 2.24 0.00 42.43 3.41
499 500 0.953471 CGGCCATCGAACCAAGTCAA 60.953 55.000 2.24 0.00 42.43 3.18
500 501 1.463674 GGCCATCGAACCAAGTCAAT 58.536 50.000 0.00 0.00 0.00 2.57
501 502 1.401905 GGCCATCGAACCAAGTCAATC 59.598 52.381 0.00 0.00 0.00 2.67
502 503 1.401905 GCCATCGAACCAAGTCAATCC 59.598 52.381 0.00 0.00 0.00 3.01
503 504 2.710377 CCATCGAACCAAGTCAATCCA 58.290 47.619 0.00 0.00 0.00 3.41
504 505 3.081061 CCATCGAACCAAGTCAATCCAA 58.919 45.455 0.00 0.00 0.00 3.53
505 506 3.119849 CCATCGAACCAAGTCAATCCAAC 60.120 47.826 0.00 0.00 0.00 3.77
506 507 2.139917 TCGAACCAAGTCAATCCAACG 58.860 47.619 0.00 0.00 0.00 4.10
507 508 2.139917 CGAACCAAGTCAATCCAACGA 58.860 47.619 0.00 0.00 0.00 3.85
508 509 2.096417 CGAACCAAGTCAATCCAACGAC 60.096 50.000 0.00 0.00 0.00 4.34
509 510 1.892209 ACCAAGTCAATCCAACGACC 58.108 50.000 0.00 0.00 32.33 4.79
510 511 1.420138 ACCAAGTCAATCCAACGACCT 59.580 47.619 0.00 0.00 32.33 3.85
511 512 2.635915 ACCAAGTCAATCCAACGACCTA 59.364 45.455 0.00 0.00 32.33 3.08
512 513 3.262420 CCAAGTCAATCCAACGACCTAG 58.738 50.000 0.00 0.00 32.33 3.02
513 514 3.056107 CCAAGTCAATCCAACGACCTAGA 60.056 47.826 0.00 0.00 32.33 2.43
514 515 3.870633 AGTCAATCCAACGACCTAGAC 57.129 47.619 0.00 0.00 32.33 2.59
515 516 3.432378 AGTCAATCCAACGACCTAGACT 58.568 45.455 0.00 0.00 32.33 3.24
516 517 3.193691 AGTCAATCCAACGACCTAGACTG 59.806 47.826 0.00 0.00 34.17 3.51
517 518 2.094182 TCAATCCAACGACCTAGACTGC 60.094 50.000 0.00 0.00 0.00 4.40
518 519 1.853963 ATCCAACGACCTAGACTGCT 58.146 50.000 0.00 0.00 0.00 4.24
519 520 1.174783 TCCAACGACCTAGACTGCTC 58.825 55.000 0.00 0.00 0.00 4.26
520 521 0.173708 CCAACGACCTAGACTGCTCC 59.826 60.000 0.00 0.00 0.00 4.70
521 522 0.888619 CAACGACCTAGACTGCTCCA 59.111 55.000 0.00 0.00 0.00 3.86
522 523 1.272490 CAACGACCTAGACTGCTCCAA 59.728 52.381 0.00 0.00 0.00 3.53
523 524 1.853963 ACGACCTAGACTGCTCCAAT 58.146 50.000 0.00 0.00 0.00 3.16
524 525 1.478510 ACGACCTAGACTGCTCCAATG 59.521 52.381 0.00 0.00 0.00 2.82
525 526 1.202463 CGACCTAGACTGCTCCAATGG 60.202 57.143 0.00 0.00 0.00 3.16
526 527 0.543749 ACCTAGACTGCTCCAATGGC 59.456 55.000 0.00 0.00 0.00 4.40
527 528 0.531532 CCTAGACTGCTCCAATGGCG 60.532 60.000 0.00 0.00 0.00 5.69
528 529 0.461548 CTAGACTGCTCCAATGGCGA 59.538 55.000 0.00 0.00 0.00 5.54
529 530 0.461548 TAGACTGCTCCAATGGCGAG 59.538 55.000 0.00 0.00 0.00 5.03
533 534 3.127533 GCTCCAATGGCGAGCGTT 61.128 61.111 0.00 0.00 43.04 4.84
534 535 1.813753 GCTCCAATGGCGAGCGTTA 60.814 57.895 0.00 0.00 43.04 3.18
535 536 1.366111 GCTCCAATGGCGAGCGTTAA 61.366 55.000 0.00 0.00 43.04 2.01
536 537 1.083489 CTCCAATGGCGAGCGTTAAA 58.917 50.000 0.00 0.00 0.00 1.52
537 538 0.800012 TCCAATGGCGAGCGTTAAAC 59.200 50.000 0.00 0.00 0.00 2.01
538 539 0.520412 CCAATGGCGAGCGTTAAACG 60.520 55.000 0.00 0.00 45.88 3.60
539 540 0.165079 CAATGGCGAGCGTTAAACGT 59.835 50.000 0.00 0.00 44.73 3.99
540 541 0.165079 AATGGCGAGCGTTAAACGTG 59.835 50.000 0.00 0.00 44.73 4.49
541 542 0.947180 ATGGCGAGCGTTAAACGTGT 60.947 50.000 0.00 0.00 44.73 4.49
542 543 1.152989 TGGCGAGCGTTAAACGTGTT 61.153 50.000 0.00 0.00 44.73 3.32
543 544 0.041926 GGCGAGCGTTAAACGTGTTT 60.042 50.000 3.21 3.21 44.73 2.83
544 545 1.192090 GGCGAGCGTTAAACGTGTTTA 59.808 47.619 1.18 1.18 44.73 2.01
545 546 2.348404 GGCGAGCGTTAAACGTGTTTAA 60.348 45.455 12.58 12.58 44.73 1.52
562 563 7.734538 GTGTTTAACGTGCAATTAATAGCAT 57.265 32.000 5.50 0.00 43.44 3.79
566 567 3.352554 CGTGCAATTAATAGCATGCCA 57.647 42.857 15.66 0.00 43.44 4.92
567 568 3.704512 CGTGCAATTAATAGCATGCCAA 58.295 40.909 15.66 2.91 43.44 4.52
568 569 4.111198 CGTGCAATTAATAGCATGCCAAA 58.889 39.130 15.66 4.00 43.44 3.28
569 570 4.746115 CGTGCAATTAATAGCATGCCAAAT 59.254 37.500 15.66 6.34 43.44 2.32
570 571 5.919707 CGTGCAATTAATAGCATGCCAAATA 59.080 36.000 15.66 0.00 43.44 1.40
571 572 6.587226 CGTGCAATTAATAGCATGCCAAATAT 59.413 34.615 15.66 2.38 43.44 1.28
572 573 7.116662 CGTGCAATTAATAGCATGCCAAATATT 59.883 33.333 15.66 13.87 43.44 1.28
573 574 9.421806 GTGCAATTAATAGCATGCCAAATATTA 57.578 29.630 15.66 12.86 43.44 0.98
574 575 9.421806 TGCAATTAATAGCATGCCAAATATTAC 57.578 29.630 15.66 5.07 38.00 1.89
575 576 9.421806 GCAATTAATAGCATGCCAAATATTACA 57.578 29.630 15.66 7.62 32.73 2.41
582 583 7.822161 AGCATGCCAAATATTACACTAATCA 57.178 32.000 15.66 0.00 0.00 2.57
583 584 7.651808 AGCATGCCAAATATTACACTAATCAC 58.348 34.615 15.66 0.00 0.00 3.06
584 585 7.285172 AGCATGCCAAATATTACACTAATCACA 59.715 33.333 15.66 0.00 0.00 3.58
585 586 7.920151 GCATGCCAAATATTACACTAATCACAA 59.080 33.333 6.36 0.00 0.00 3.33
586 587 9.800433 CATGCCAAATATTACACTAATCACAAA 57.200 29.630 0.00 0.00 0.00 2.83
624 625 9.817809 AATAATAGCATACCTAATATCCACGTG 57.182 33.333 9.08 9.08 0.00 4.49
625 626 3.926616 AGCATACCTAATATCCACGTGC 58.073 45.455 10.91 0.00 0.00 5.34
626 627 3.323691 AGCATACCTAATATCCACGTGCA 59.676 43.478 10.91 0.00 32.82 4.57
627 628 4.062293 GCATACCTAATATCCACGTGCAA 58.938 43.478 10.91 0.00 0.00 4.08
628 629 4.695455 GCATACCTAATATCCACGTGCAAT 59.305 41.667 10.91 8.44 0.00 3.56
629 630 5.181245 GCATACCTAATATCCACGTGCAATT 59.819 40.000 10.91 11.22 0.00 2.32
630 631 6.370442 GCATACCTAATATCCACGTGCAATTA 59.630 38.462 10.91 11.73 0.00 1.40
631 632 7.094975 GCATACCTAATATCCACGTGCAATTAA 60.095 37.037 10.91 0.02 0.00 1.40
632 633 8.946085 CATACCTAATATCCACGTGCAATTAAT 58.054 33.333 10.91 7.09 0.00 1.40
659 660 7.928908 ATTGCCTAAATATTAACGTGCATTG 57.071 32.000 0.00 0.00 0.00 2.82
660 661 5.277825 TGCCTAAATATTAACGTGCATTGC 58.722 37.500 0.46 0.46 0.00 3.56
661 662 5.163612 TGCCTAAATATTAACGTGCATTGCA 60.164 36.000 7.38 7.38 35.60 4.08
670 671 4.040636 TGCATTGCACGTGCGCAT 62.041 55.556 33.22 24.77 45.37 4.73
671 672 2.806198 GCATTGCACGTGCGCATT 60.806 55.556 33.22 16.21 45.83 3.56
672 673 2.374226 GCATTGCACGTGCGCATTT 61.374 52.632 33.22 14.44 45.83 2.32
673 674 1.069924 GCATTGCACGTGCGCATTTA 61.070 50.000 33.22 14.00 45.83 1.40
674 675 0.634731 CATTGCACGTGCGCATTTAC 59.365 50.000 33.22 7.31 45.83 2.01
675 676 0.521291 ATTGCACGTGCGCATTTACT 59.479 45.000 33.22 8.15 45.83 2.24
676 677 1.149148 TTGCACGTGCGCATTTACTA 58.851 45.000 33.22 11.66 45.83 1.82
677 678 0.718904 TGCACGTGCGCATTTACTAG 59.281 50.000 33.22 0.66 45.83 2.57
678 679 0.719465 GCACGTGCGCATTTACTAGT 59.281 50.000 26.77 0.00 0.00 2.57
682 683 3.061322 ACGTGCGCATTTACTAGTGAAA 58.939 40.909 15.91 3.04 0.00 2.69
684 685 4.081761 CGTGCGCATTTACTAGTGAAAAG 58.918 43.478 15.91 2.40 0.00 2.27
688 689 6.635239 GTGCGCATTTACTAGTGAAAAGAAAA 59.365 34.615 15.91 0.00 0.00 2.29
805 806 2.771943 TCCAGCAAATTAGATCGTCCCT 59.228 45.455 0.00 0.00 0.00 4.20
848 853 7.110155 GGGTTTTAGCCAGCAAGCTATATATA 58.890 38.462 8.35 0.00 44.56 0.86
873 878 2.050351 CCGCGTGTGAGTCTTCGT 60.050 61.111 4.92 0.00 0.00 3.85
900 905 4.056050 TCTCGTTCTCCCGAAAAGAAAAG 58.944 43.478 0.00 0.00 36.24 2.27
901 906 4.056050 CTCGTTCTCCCGAAAAGAAAAGA 58.944 43.478 0.00 0.00 36.24 2.52
902 907 4.444536 TCGTTCTCCCGAAAAGAAAAGAA 58.555 39.130 0.00 0.00 34.68 2.52
903 908 4.877251 TCGTTCTCCCGAAAAGAAAAGAAA 59.123 37.500 0.00 0.00 34.68 2.52
904 909 5.354792 TCGTTCTCCCGAAAAGAAAAGAAAA 59.645 36.000 0.00 0.00 34.68 2.29
956 961 2.539688 CCATACACACCACGATCGATTG 59.460 50.000 24.34 16.74 0.00 2.67
1161 1166 0.033796 ACACCCCGACCGAATCTCTA 60.034 55.000 0.00 0.00 0.00 2.43
1302 1310 3.573489 GAACGTCGCCGCCAACTTG 62.573 63.158 0.00 0.00 37.70 3.16
1383 1391 2.073101 GGTCTCCATCCTCCACCCC 61.073 68.421 0.00 0.00 0.00 4.95
1449 1457 1.113517 GCCCCGTGCTGATCCTACTA 61.114 60.000 0.00 0.00 36.87 1.82
1471 1479 1.845627 CTTGGCCCTCTTCCAGCTCA 61.846 60.000 0.00 0.00 34.66 4.26
1653 1661 1.519455 GACCATCTTCTCGGCGGTG 60.519 63.158 7.21 0.00 0.00 4.94
1656 1664 1.513158 CATCTTCTCGGCGGTGTCT 59.487 57.895 7.21 0.00 0.00 3.41
1659 1667 1.153939 CTTCTCGGCGGTGTCTCTG 60.154 63.158 7.21 0.00 0.00 3.35
1751 1759 2.111582 GCAGGCTGCTGGTAGCTTC 61.112 63.158 31.37 0.00 42.97 3.86
1752 1760 1.451028 CAGGCTGCTGGTAGCTTCC 60.451 63.158 0.00 1.68 42.97 3.46
1753 1761 2.512515 GGCTGCTGGTAGCTTCCG 60.513 66.667 4.78 1.23 42.97 4.30
1827 1835 1.283347 TCATGCTCTTCTCCCTGCTT 58.717 50.000 0.00 0.00 0.00 3.91
1918 1954 4.394920 TCCGATAATTGTTGTTCTTCAGGC 59.605 41.667 0.00 0.00 0.00 4.85
1920 1956 4.662145 GATAATTGTTGTTCTTCAGGCGG 58.338 43.478 0.00 0.00 0.00 6.13
1923 1959 2.668212 TTGTTCTTCAGGCGGCCG 60.668 61.111 24.05 24.05 0.00 6.13
1931 1967 0.321741 TTCAGGCGGCCGTTATTCAA 60.322 50.000 28.70 9.57 0.00 2.69
1940 1976 3.517602 GGCCGTTATTCAATTTGTTCCC 58.482 45.455 0.00 0.00 0.00 3.97
1944 1980 5.355910 GCCGTTATTCAATTTGTTCCCTCTA 59.644 40.000 0.00 0.00 0.00 2.43
1945 1981 6.039382 GCCGTTATTCAATTTGTTCCCTCTAT 59.961 38.462 0.00 0.00 0.00 1.98
1947 1983 8.466798 CCGTTATTCAATTTGTTCCCTCTATTT 58.533 33.333 0.00 0.00 0.00 1.40
1948 1984 9.289303 CGTTATTCAATTTGTTCCCTCTATTTG 57.711 33.333 0.00 0.00 0.00 2.32
1967 2003 3.459232 TGTGTGTATAGGCTGCAGATC 57.541 47.619 20.43 8.76 0.00 2.75
2004 2040 2.877097 TGCCATGTGGAGTGTACAAT 57.123 45.000 2.55 0.00 37.39 2.71
2014 2050 3.820467 TGGAGTGTACAATTGCCTTTGAG 59.180 43.478 5.05 0.00 0.00 3.02
2083 2119 2.094762 ACTCCGCTGGTTGTAATGAC 57.905 50.000 0.00 0.00 0.00 3.06
2089 2125 2.930040 CGCTGGTTGTAATGACCTACTG 59.070 50.000 0.00 0.00 38.04 2.74
2106 2142 7.685849 ACCTACTGGTTGCTATCCTTTATTA 57.314 36.000 0.00 0.00 46.05 0.98
2107 2143 8.097791 ACCTACTGGTTGCTATCCTTTATTAA 57.902 34.615 0.00 0.00 46.05 1.40
2108 2144 8.724310 ACCTACTGGTTGCTATCCTTTATTAAT 58.276 33.333 0.00 0.00 46.05 1.40
2109 2145 9.574516 CCTACTGGTTGCTATCCTTTATTAATT 57.425 33.333 0.00 0.00 0.00 1.40
2120 2156 5.817784 TCCTTTATTAATTGTTCCGGTCCA 58.182 37.500 0.00 0.00 0.00 4.02
2123 2159 6.978080 CCTTTATTAATTGTTCCGGTCCAATG 59.022 38.462 17.84 7.29 31.89 2.82
2126 2162 3.443145 AATTGTTCCGGTCCAATGGTA 57.557 42.857 17.84 0.00 31.89 3.25
2184 5244 2.494870 AGGCAAAATCAGGAGTTCATGC 59.505 45.455 0.00 0.00 0.00 4.06
2197 5258 7.496920 TCAGGAGTTCATGCTAGTCAAAATATG 59.503 37.037 0.00 0.00 0.00 1.78
2292 5357 0.245539 TGCCTGCTTACCACGACTAC 59.754 55.000 0.00 0.00 0.00 2.73
2297 5362 3.243336 CTGCTTACCACGACTACTTGTC 58.757 50.000 0.00 0.00 42.06 3.18
2298 5363 2.889045 TGCTTACCACGACTACTTGTCT 59.111 45.455 0.00 0.00 43.25 3.41
2299 5364 3.243336 GCTTACCACGACTACTTGTCTG 58.757 50.000 0.00 0.00 43.25 3.51
2300 5365 3.305199 GCTTACCACGACTACTTGTCTGT 60.305 47.826 0.00 0.00 43.25 3.41
2301 5366 4.474113 CTTACCACGACTACTTGTCTGTC 58.526 47.826 0.00 0.00 43.25 3.51
2401 5466 4.420522 ACATTTGGGCATGAAAACTGTT 57.579 36.364 0.00 0.00 0.00 3.16
2402 5467 4.779696 ACATTTGGGCATGAAAACTGTTT 58.220 34.783 0.00 0.00 0.00 2.83
2403 5468 5.192176 ACATTTGGGCATGAAAACTGTTTT 58.808 33.333 17.71 17.71 35.12 2.43
2474 5539 2.094182 GCATCTACTGACCCGAACTGAA 60.094 50.000 0.00 0.00 0.00 3.02
2489 5554 4.090066 CGAACTGAACCTACTGTCAATTCG 59.910 45.833 3.36 3.36 0.00 3.34
2502 5567 3.500680 TGTCAATTCGGAACTTAACAGCC 59.499 43.478 0.00 0.00 0.00 4.85
2509 5574 2.096417 CGGAACTTAACAGCCGAAACTG 60.096 50.000 0.00 0.00 46.29 3.16
2651 6450 9.812347 TTGTGCTAGGGATTAATCATTTGATAT 57.188 29.630 17.07 0.00 33.73 1.63
2677 6476 5.550232 CAGATGTTGCTTTGCAGTATACA 57.450 39.130 5.50 0.00 40.61 2.29
2715 6523 5.473162 ACATGCTATGTGTTTTGTTCTAGCA 59.527 36.000 4.72 4.72 43.83 3.49
2720 6528 4.630894 TGTGTTTTGTTCTAGCACCAAG 57.369 40.909 0.00 0.00 0.00 3.61
2753 6562 3.958147 TGTGACTTGGAACAGAGTACTCA 59.042 43.478 24.44 0.31 42.39 3.41
2795 6604 3.332761 TTAAACAAAGTGCTGCGAGTG 57.667 42.857 0.00 0.00 0.00 3.51
2810 6709 5.106908 GCTGCGAGTGAACTAAATTCTTCTT 60.107 40.000 0.00 0.00 38.25 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.768164 TCTGATTGAAAGTTTACCTTGTCCC 59.232 40.000 0.00 0.00 32.32 4.46
1 2 6.568653 GCTCTGATTGAAAGTTTACCTTGTCC 60.569 42.308 0.00 0.00 32.32 4.02
2 3 6.374578 GCTCTGATTGAAAGTTTACCTTGTC 58.625 40.000 0.00 0.00 32.32 3.18
3 4 5.049405 CGCTCTGATTGAAAGTTTACCTTGT 60.049 40.000 0.00 0.00 32.32 3.16
4 5 5.385617 CGCTCTGATTGAAAGTTTACCTTG 58.614 41.667 0.00 0.00 32.32 3.61
5 6 4.083271 GCGCTCTGATTGAAAGTTTACCTT 60.083 41.667 0.00 0.00 33.79 3.50
6 7 3.437049 GCGCTCTGATTGAAAGTTTACCT 59.563 43.478 0.00 0.00 0.00 3.08
7 8 3.437049 AGCGCTCTGATTGAAAGTTTACC 59.563 43.478 2.64 0.00 0.00 2.85
8 9 4.083802 ACAGCGCTCTGATTGAAAGTTTAC 60.084 41.667 7.13 0.00 42.95 2.01
9 10 4.065088 ACAGCGCTCTGATTGAAAGTTTA 58.935 39.130 7.13 0.00 42.95 2.01
10 11 2.880890 ACAGCGCTCTGATTGAAAGTTT 59.119 40.909 7.13 0.00 42.95 2.66
11 12 2.498167 ACAGCGCTCTGATTGAAAGTT 58.502 42.857 7.13 0.00 42.95 2.66
12 13 2.175878 ACAGCGCTCTGATTGAAAGT 57.824 45.000 7.13 0.00 42.95 2.66
13 14 3.433274 TGTAACAGCGCTCTGATTGAAAG 59.567 43.478 7.13 0.00 42.95 2.62
14 15 3.398406 TGTAACAGCGCTCTGATTGAAA 58.602 40.909 7.13 0.00 42.95 2.69
15 16 3.038788 TGTAACAGCGCTCTGATTGAA 57.961 42.857 7.13 0.00 42.95 2.69
16 17 2.741759 TGTAACAGCGCTCTGATTGA 57.258 45.000 7.13 0.00 42.95 2.57
17 18 3.433274 TCTTTGTAACAGCGCTCTGATTG 59.567 43.478 7.13 0.00 42.95 2.67
18 19 3.664107 TCTTTGTAACAGCGCTCTGATT 58.336 40.909 7.13 2.05 42.95 2.57
19 20 3.056536 TCTCTTTGTAACAGCGCTCTGAT 60.057 43.478 7.13 0.31 42.95 2.90
20 21 2.296190 TCTCTTTGTAACAGCGCTCTGA 59.704 45.455 7.13 0.00 42.95 3.27
21 22 2.677199 TCTCTTTGTAACAGCGCTCTG 58.323 47.619 7.13 1.19 45.71 3.35
22 23 3.386768 TTCTCTTTGTAACAGCGCTCT 57.613 42.857 7.13 0.00 0.00 4.09
23 24 4.670227 ATTTCTCTTTGTAACAGCGCTC 57.330 40.909 7.13 0.00 0.00 5.03
24 25 6.554334 TTTATTTCTCTTTGTAACAGCGCT 57.446 33.333 2.64 2.64 0.00 5.92
25 26 7.021196 TGATTTATTTCTCTTTGTAACAGCGC 58.979 34.615 0.00 0.00 0.00 5.92
26 27 7.217070 GCTGATTTATTTCTCTTTGTAACAGCG 59.783 37.037 0.00 0.00 35.93 5.18
27 28 8.023128 TGCTGATTTATTTCTCTTTGTAACAGC 58.977 33.333 0.00 0.00 42.74 4.40
35 36 9.573133 CGGTTAAATGCTGATTTATTTCTCTTT 57.427 29.630 0.00 0.00 34.64 2.52
36 37 7.702348 GCGGTTAAATGCTGATTTATTTCTCTT 59.298 33.333 0.00 0.00 34.64 2.85
37 38 7.067494 AGCGGTTAAATGCTGATTTATTTCTCT 59.933 33.333 2.12 0.00 40.62 3.10
38 39 7.196331 AGCGGTTAAATGCTGATTTATTTCTC 58.804 34.615 2.12 0.00 40.62 2.87
39 40 7.100458 AGCGGTTAAATGCTGATTTATTTCT 57.900 32.000 2.12 0.00 40.62 2.52
40 41 8.129211 ACTAGCGGTTAAATGCTGATTTATTTC 58.871 33.333 11.82 0.00 42.46 2.17
41 42 7.996385 ACTAGCGGTTAAATGCTGATTTATTT 58.004 30.769 11.82 0.00 42.46 1.40
42 43 7.568199 ACTAGCGGTTAAATGCTGATTTATT 57.432 32.000 11.82 0.00 42.46 1.40
43 44 7.568199 AACTAGCGGTTAAATGCTGATTTAT 57.432 32.000 11.82 0.00 42.46 1.40
44 45 6.995511 AACTAGCGGTTAAATGCTGATTTA 57.004 33.333 11.82 0.00 42.46 1.40
45 46 5.897377 AACTAGCGGTTAAATGCTGATTT 57.103 34.783 11.82 0.00 42.46 2.17
46 47 7.568199 AATAACTAGCGGTTAAATGCTGATT 57.432 32.000 11.82 8.64 42.74 2.57
47 48 7.387948 CCTAATAACTAGCGGTTAAATGCTGAT 59.612 37.037 11.82 2.58 42.74 2.90
48 49 6.704493 CCTAATAACTAGCGGTTAAATGCTGA 59.296 38.462 11.82 0.00 42.74 4.26
49 50 6.704493 TCCTAATAACTAGCGGTTAAATGCTG 59.296 38.462 11.82 5.82 42.74 4.41
50 51 6.823497 TCCTAATAACTAGCGGTTAAATGCT 58.177 36.000 7.72 7.72 42.74 3.79
51 52 7.519002 CATCCTAATAACTAGCGGTTAAATGC 58.481 38.462 8.83 0.00 42.74 3.56
52 53 7.360946 GGCATCCTAATAACTAGCGGTTAAATG 60.361 40.741 8.83 8.78 42.74 2.32
53 54 6.653740 GGCATCCTAATAACTAGCGGTTAAAT 59.346 38.462 8.83 5.11 42.74 1.40
54 55 5.993441 GGCATCCTAATAACTAGCGGTTAAA 59.007 40.000 8.83 1.97 42.74 1.52
55 56 5.306160 AGGCATCCTAATAACTAGCGGTTAA 59.694 40.000 8.83 0.00 36.67 2.01
56 57 4.836736 AGGCATCCTAATAACTAGCGGTTA 59.163 41.667 0.00 7.54 37.14 2.85
57 58 3.646637 AGGCATCCTAATAACTAGCGGTT 59.353 43.478 0.00 3.83 35.43 4.44
58 59 3.240302 AGGCATCCTAATAACTAGCGGT 58.760 45.455 0.00 0.00 28.47 5.68
59 60 3.963428 AGGCATCCTAATAACTAGCGG 57.037 47.619 0.00 0.00 28.47 5.52
60 61 5.758296 TGAAAAGGCATCCTAATAACTAGCG 59.242 40.000 0.00 0.00 31.13 4.26
61 62 6.293680 GCTGAAAAGGCATCCTAATAACTAGC 60.294 42.308 0.00 0.00 31.13 3.42
62 63 6.995091 AGCTGAAAAGGCATCCTAATAACTAG 59.005 38.462 0.00 0.00 31.13 2.57
63 64 6.900194 AGCTGAAAAGGCATCCTAATAACTA 58.100 36.000 0.00 0.00 31.13 2.24
64 65 5.760131 AGCTGAAAAGGCATCCTAATAACT 58.240 37.500 0.00 0.00 31.13 2.24
65 66 5.825151 AGAGCTGAAAAGGCATCCTAATAAC 59.175 40.000 0.00 0.00 31.13 1.89
66 67 6.006275 AGAGCTGAAAAGGCATCCTAATAA 57.994 37.500 0.00 0.00 31.13 1.40
67 68 5.636903 AGAGCTGAAAAGGCATCCTAATA 57.363 39.130 0.00 0.00 31.13 0.98
68 69 4.516652 AGAGCTGAAAAGGCATCCTAAT 57.483 40.909 0.00 0.00 31.13 1.73
69 70 4.225042 TGTAGAGCTGAAAAGGCATCCTAA 59.775 41.667 0.00 0.00 31.13 2.69
70 71 3.774766 TGTAGAGCTGAAAAGGCATCCTA 59.225 43.478 0.00 0.00 31.13 2.94
71 72 2.573462 TGTAGAGCTGAAAAGGCATCCT 59.427 45.455 0.00 0.00 33.87 3.24
72 73 2.991250 TGTAGAGCTGAAAAGGCATCC 58.009 47.619 0.00 0.00 0.00 3.51
73 74 3.243002 GCATGTAGAGCTGAAAAGGCATC 60.243 47.826 0.00 0.00 0.00 3.91
74 75 2.686915 GCATGTAGAGCTGAAAAGGCAT 59.313 45.455 0.00 0.00 0.00 4.40
75 76 2.086869 GCATGTAGAGCTGAAAAGGCA 58.913 47.619 0.00 0.00 0.00 4.75
76 77 2.086869 TGCATGTAGAGCTGAAAAGGC 58.913 47.619 0.00 0.00 0.00 4.35
77 78 2.681848 CCTGCATGTAGAGCTGAAAAGG 59.318 50.000 12.93 0.00 33.39 3.11
78 79 2.097142 GCCTGCATGTAGAGCTGAAAAG 59.903 50.000 12.93 0.00 33.39 2.27
79 80 2.086869 GCCTGCATGTAGAGCTGAAAA 58.913 47.619 12.93 0.00 33.39 2.29
80 81 1.679944 GGCCTGCATGTAGAGCTGAAA 60.680 52.381 12.93 0.00 33.39 2.69
81 82 0.107508 GGCCTGCATGTAGAGCTGAA 60.108 55.000 12.93 0.00 33.39 3.02
82 83 1.524002 GGCCTGCATGTAGAGCTGA 59.476 57.895 12.93 0.00 33.39 4.26
83 84 1.525535 GGGCCTGCATGTAGAGCTG 60.526 63.158 12.93 0.00 0.00 4.24
84 85 2.914289 GGGCCTGCATGTAGAGCT 59.086 61.111 12.93 0.00 0.00 4.09
85 86 2.590007 CGGGCCTGCATGTAGAGC 60.590 66.667 12.93 13.16 0.00 4.09
86 87 2.590007 GCGGGCCTGCATGTAGAG 60.590 66.667 32.13 3.77 34.15 2.43
87 88 4.175337 GGCGGGCCTGCATGTAGA 62.175 66.667 36.64 0.00 36.28 2.59
88 89 4.181010 AGGCGGGCCTGCATGTAG 62.181 66.667 36.64 3.45 46.22 2.74
97 98 2.127232 ACATGCAATTAGGCGGGCC 61.127 57.895 0.18 0.18 36.28 5.80
98 99 1.066257 CACATGCAATTAGGCGGGC 59.934 57.895 0.00 0.00 36.28 6.13
99 100 1.102154 TTCACATGCAATTAGGCGGG 58.898 50.000 0.00 0.00 36.28 6.13
100 101 2.529151 GTTTCACATGCAATTAGGCGG 58.471 47.619 0.00 0.00 36.28 6.13
101 102 2.529151 GGTTTCACATGCAATTAGGCG 58.471 47.619 0.00 0.00 36.28 5.52
102 103 2.529151 CGGTTTCACATGCAATTAGGC 58.471 47.619 0.00 0.00 0.00 3.93
103 104 2.164219 AGCGGTTTCACATGCAATTAGG 59.836 45.455 0.00 0.00 0.00 2.69
104 105 3.127548 AGAGCGGTTTCACATGCAATTAG 59.872 43.478 0.00 0.00 0.00 1.73
105 106 3.081061 AGAGCGGTTTCACATGCAATTA 58.919 40.909 0.00 0.00 0.00 1.40
106 107 1.888512 AGAGCGGTTTCACATGCAATT 59.111 42.857 0.00 0.00 0.00 2.32
107 108 1.538047 AGAGCGGTTTCACATGCAAT 58.462 45.000 0.00 0.00 0.00 3.56
108 109 1.001487 CAAGAGCGGTTTCACATGCAA 60.001 47.619 0.00 0.00 0.00 4.08
109 110 0.592637 CAAGAGCGGTTTCACATGCA 59.407 50.000 0.00 0.00 0.00 3.96
110 111 0.730494 GCAAGAGCGGTTTCACATGC 60.730 55.000 0.00 0.00 0.00 4.06
111 112 0.109597 GGCAAGAGCGGTTTCACATG 60.110 55.000 0.00 0.00 43.41 3.21
112 113 0.250901 AGGCAAGAGCGGTTTCACAT 60.251 50.000 0.00 0.00 43.41 3.21
113 114 0.394938 TAGGCAAGAGCGGTTTCACA 59.605 50.000 0.00 0.00 43.41 3.58
114 115 1.519408 TTAGGCAAGAGCGGTTTCAC 58.481 50.000 0.00 0.00 43.41 3.18
115 116 2.290008 TGATTAGGCAAGAGCGGTTTCA 60.290 45.455 0.00 0.00 43.41 2.69
116 117 2.356135 TGATTAGGCAAGAGCGGTTTC 58.644 47.619 0.00 0.00 43.41 2.78
117 118 2.488153 GTTGATTAGGCAAGAGCGGTTT 59.512 45.455 0.00 0.00 43.41 3.27
118 119 2.084546 GTTGATTAGGCAAGAGCGGTT 58.915 47.619 0.00 0.00 43.41 4.44
119 120 1.739067 GTTGATTAGGCAAGAGCGGT 58.261 50.000 0.00 0.00 43.41 5.68
120 121 0.652592 CGTTGATTAGGCAAGAGCGG 59.347 55.000 0.00 0.00 43.41 5.52
121 122 0.026803 GCGTTGATTAGGCAAGAGCG 59.973 55.000 0.00 0.00 43.41 5.03
122 123 1.086696 TGCGTTGATTAGGCAAGAGC 58.913 50.000 0.00 0.00 44.07 4.09
127 128 2.853159 CCTGTGCGTTGATTAGGCA 58.147 52.632 0.00 0.00 44.77 4.75
128 129 1.429423 GCCTGTGCGTTGATTAGGC 59.571 57.895 0.00 0.00 46.04 3.93
129 130 1.009829 GAGCCTGTGCGTTGATTAGG 58.990 55.000 0.00 0.00 44.33 2.69
130 131 0.647410 CGAGCCTGTGCGTTGATTAG 59.353 55.000 0.00 0.00 44.33 1.73
131 132 0.037697 ACGAGCCTGTGCGTTGATTA 60.038 50.000 0.00 0.00 44.33 1.75
132 133 1.301716 ACGAGCCTGTGCGTTGATT 60.302 52.632 0.00 0.00 44.33 2.57
133 134 2.343758 ACGAGCCTGTGCGTTGAT 59.656 55.556 0.00 0.00 44.33 2.57
137 138 4.908687 TGCAACGAGCCTGTGCGT 62.909 61.111 0.00 0.00 44.83 5.24
138 139 3.425713 ATGCAACGAGCCTGTGCG 61.426 61.111 0.00 0.00 44.83 5.34
139 140 2.177531 CATGCAACGAGCCTGTGC 59.822 61.111 0.00 0.00 44.83 4.57
140 141 2.177531 GCATGCAACGAGCCTGTG 59.822 61.111 14.21 5.20 44.83 3.66
141 142 2.281692 TGCATGCAACGAGCCTGT 60.282 55.556 20.30 0.00 44.83 4.00
142 143 2.483745 CTGCATGCAACGAGCCTG 59.516 61.111 22.88 3.14 44.83 4.85
143 144 2.749044 CCTGCATGCAACGAGCCT 60.749 61.111 22.88 0.00 44.83 4.58
144 145 3.818787 CCCTGCATGCAACGAGCC 61.819 66.667 22.88 0.00 44.83 4.70
145 146 3.818787 CCCCTGCATGCAACGAGC 61.819 66.667 22.88 0.00 45.96 5.03
146 147 1.526575 AAACCCCTGCATGCAACGAG 61.527 55.000 22.88 12.91 0.00 4.18
147 148 1.112315 AAAACCCCTGCATGCAACGA 61.112 50.000 22.88 0.00 0.00 3.85
148 149 0.667184 GAAAACCCCTGCATGCAACG 60.667 55.000 22.88 14.28 0.00 4.10
149 150 0.392336 TGAAAACCCCTGCATGCAAC 59.608 50.000 22.88 6.38 0.00 4.17
150 151 0.392336 GTGAAAACCCCTGCATGCAA 59.608 50.000 22.88 5.74 0.00 4.08
151 152 1.804396 CGTGAAAACCCCTGCATGCA 61.804 55.000 21.29 21.29 0.00 3.96
152 153 1.080569 CGTGAAAACCCCTGCATGC 60.081 57.895 11.82 11.82 0.00 4.06
153 154 0.893270 TCCGTGAAAACCCCTGCATG 60.893 55.000 0.00 0.00 0.00 4.06
154 155 0.609131 CTCCGTGAAAACCCCTGCAT 60.609 55.000 0.00 0.00 0.00 3.96
155 156 1.228124 CTCCGTGAAAACCCCTGCA 60.228 57.895 0.00 0.00 0.00 4.41
156 157 0.035739 TACTCCGTGAAAACCCCTGC 59.964 55.000 0.00 0.00 0.00 4.85
157 158 1.338769 CCTACTCCGTGAAAACCCCTG 60.339 57.143 0.00 0.00 0.00 4.45
158 159 0.981943 CCTACTCCGTGAAAACCCCT 59.018 55.000 0.00 0.00 0.00 4.79
159 160 0.978907 TCCTACTCCGTGAAAACCCC 59.021 55.000 0.00 0.00 0.00 4.95
160 161 2.420642 GTTCCTACTCCGTGAAAACCC 58.579 52.381 0.00 0.00 0.00 4.11
161 162 2.064014 CGTTCCTACTCCGTGAAAACC 58.936 52.381 0.00 0.00 0.00 3.27
162 163 2.985139 CTCGTTCCTACTCCGTGAAAAC 59.015 50.000 0.00 0.00 0.00 2.43
163 164 2.029649 CCTCGTTCCTACTCCGTGAAAA 60.030 50.000 0.00 0.00 0.00 2.29
164 165 1.542915 CCTCGTTCCTACTCCGTGAAA 59.457 52.381 0.00 0.00 0.00 2.69
165 166 1.171308 CCTCGTTCCTACTCCGTGAA 58.829 55.000 0.00 0.00 0.00 3.18
166 167 0.679002 CCCTCGTTCCTACTCCGTGA 60.679 60.000 0.00 0.00 0.00 4.35
167 168 0.679002 TCCCTCGTTCCTACTCCGTG 60.679 60.000 0.00 0.00 0.00 4.94
168 169 0.038744 TTCCCTCGTTCCTACTCCGT 59.961 55.000 0.00 0.00 0.00 4.69
169 170 1.400737 ATTCCCTCGTTCCTACTCCG 58.599 55.000 0.00 0.00 0.00 4.63
170 171 2.764572 TCAATTCCCTCGTTCCTACTCC 59.235 50.000 0.00 0.00 0.00 3.85
171 172 3.181474 CCTCAATTCCCTCGTTCCTACTC 60.181 52.174 0.00 0.00 0.00 2.59
172 173 2.766828 CCTCAATTCCCTCGTTCCTACT 59.233 50.000 0.00 0.00 0.00 2.57
173 174 2.158943 CCCTCAATTCCCTCGTTCCTAC 60.159 54.545 0.00 0.00 0.00 3.18
174 175 2.116238 CCCTCAATTCCCTCGTTCCTA 58.884 52.381 0.00 0.00 0.00 2.94
175 176 0.912486 CCCTCAATTCCCTCGTTCCT 59.088 55.000 0.00 0.00 0.00 3.36
176 177 0.107165 CCCCTCAATTCCCTCGTTCC 60.107 60.000 0.00 0.00 0.00 3.62
177 178 0.107165 CCCCCTCAATTCCCTCGTTC 60.107 60.000 0.00 0.00 0.00 3.95
178 179 0.549169 TCCCCCTCAATTCCCTCGTT 60.549 55.000 0.00 0.00 0.00 3.85
179 180 0.549169 TTCCCCCTCAATTCCCTCGT 60.549 55.000 0.00 0.00 0.00 4.18
180 181 0.181350 CTTCCCCCTCAATTCCCTCG 59.819 60.000 0.00 0.00 0.00 4.63
181 182 1.492599 CTCTTCCCCCTCAATTCCCTC 59.507 57.143 0.00 0.00 0.00 4.30
182 183 1.082879 TCTCTTCCCCCTCAATTCCCT 59.917 52.381 0.00 0.00 0.00 4.20
183 184 1.596496 TCTCTTCCCCCTCAATTCCC 58.404 55.000 0.00 0.00 0.00 3.97
184 185 2.357257 GGTTCTCTTCCCCCTCAATTCC 60.357 54.545 0.00 0.00 0.00 3.01
185 186 2.357257 GGGTTCTCTTCCCCCTCAATTC 60.357 54.545 0.00 0.00 39.08 2.17
186 187 1.641192 GGGTTCTCTTCCCCCTCAATT 59.359 52.381 0.00 0.00 39.08 2.32
187 188 1.203622 AGGGTTCTCTTCCCCCTCAAT 60.204 52.381 0.00 0.00 45.98 2.57
188 189 0.196118 AGGGTTCTCTTCCCCCTCAA 59.804 55.000 0.00 0.00 45.98 3.02
189 190 1.876296 AGGGTTCTCTTCCCCCTCA 59.124 57.895 0.00 0.00 45.98 3.86
190 191 4.922067 AGGGTTCTCTTCCCCCTC 57.078 61.111 0.00 0.00 45.98 4.30
192 193 1.612739 ACGAGGGTTCTCTTCCCCC 60.613 63.158 0.00 0.00 45.64 5.40
193 194 0.903454 TCACGAGGGTTCTCTTCCCC 60.903 60.000 0.00 0.00 45.64 4.81
194 195 0.974383 TTCACGAGGGTTCTCTTCCC 59.026 55.000 0.00 0.00 44.90 3.97
195 196 1.669211 CGTTCACGAGGGTTCTCTTCC 60.669 57.143 0.00 0.00 43.02 3.46
196 197 1.268899 TCGTTCACGAGGGTTCTCTTC 59.731 52.381 0.00 0.00 44.22 2.87
197 198 1.325355 TCGTTCACGAGGGTTCTCTT 58.675 50.000 0.00 0.00 44.22 2.85
198 199 3.031916 TCGTTCACGAGGGTTCTCT 57.968 52.632 0.00 0.00 44.22 3.10
208 209 2.125912 CTCCCAGCCTCGTTCACG 60.126 66.667 0.00 0.00 41.45 4.35
209 210 2.266055 CCTCCCAGCCTCGTTCAC 59.734 66.667 0.00 0.00 0.00 3.18
210 211 3.003173 CCCTCCCAGCCTCGTTCA 61.003 66.667 0.00 0.00 0.00 3.18
211 212 4.475135 GCCCTCCCAGCCTCGTTC 62.475 72.222 0.00 0.00 0.00 3.95
214 215 4.247380 GATGCCCTCCCAGCCTCG 62.247 72.222 0.00 0.00 0.00 4.63
215 216 2.215451 TTTGATGCCCTCCCAGCCTC 62.215 60.000 0.00 0.00 0.00 4.70
216 217 2.220786 CTTTGATGCCCTCCCAGCCT 62.221 60.000 0.00 0.00 0.00 4.58
217 218 1.755783 CTTTGATGCCCTCCCAGCC 60.756 63.158 0.00 0.00 0.00 4.85
218 219 0.750911 CTCTTTGATGCCCTCCCAGC 60.751 60.000 0.00 0.00 0.00 4.85
219 220 0.914644 TCTCTTTGATGCCCTCCCAG 59.085 55.000 0.00 0.00 0.00 4.45
220 221 1.371467 TTCTCTTTGATGCCCTCCCA 58.629 50.000 0.00 0.00 0.00 4.37
221 222 2.744352 ATTCTCTTTGATGCCCTCCC 57.256 50.000 0.00 0.00 0.00 4.30
222 223 6.097412 ACATTAAATTCTCTTTGATGCCCTCC 59.903 38.462 3.29 0.00 31.15 4.30
223 224 7.105241 ACATTAAATTCTCTTTGATGCCCTC 57.895 36.000 3.29 0.00 31.15 4.30
224 225 7.364144 GGAACATTAAATTCTCTTTGATGCCCT 60.364 37.037 3.29 0.00 31.15 5.19
225 226 6.758416 GGAACATTAAATTCTCTTTGATGCCC 59.242 38.462 3.29 2.37 31.15 5.36
226 227 7.276438 GTGGAACATTAAATTCTCTTTGATGCC 59.724 37.037 3.29 0.00 44.52 4.40
227 228 7.008628 CGTGGAACATTAAATTCTCTTTGATGC 59.991 37.037 3.29 0.00 44.52 3.91
228 229 7.008628 GCGTGGAACATTAAATTCTCTTTGATG 59.991 37.037 3.60 2.14 44.52 3.07
229 230 7.029563 GCGTGGAACATTAAATTCTCTTTGAT 58.970 34.615 3.60 0.00 44.52 2.57
230 231 6.378582 GCGTGGAACATTAAATTCTCTTTGA 58.621 36.000 3.60 0.00 44.52 2.69
231 232 5.572896 GGCGTGGAACATTAAATTCTCTTTG 59.427 40.000 3.60 0.00 44.52 2.77
232 233 5.242838 TGGCGTGGAACATTAAATTCTCTTT 59.757 36.000 3.60 0.00 44.52 2.52
233 234 4.764823 TGGCGTGGAACATTAAATTCTCTT 59.235 37.500 3.60 0.00 44.52 2.85
234 235 4.331968 TGGCGTGGAACATTAAATTCTCT 58.668 39.130 3.60 0.00 44.52 3.10
235 236 4.695217 TGGCGTGGAACATTAAATTCTC 57.305 40.909 3.60 0.00 44.52 2.87
236 237 4.082245 CCTTGGCGTGGAACATTAAATTCT 60.082 41.667 3.60 0.00 44.52 2.40
237 238 4.173256 CCTTGGCGTGGAACATTAAATTC 58.827 43.478 0.00 0.00 44.52 2.17
238 239 3.576550 ACCTTGGCGTGGAACATTAAATT 59.423 39.130 2.55 0.00 44.52 1.82
239 240 3.161866 ACCTTGGCGTGGAACATTAAAT 58.838 40.909 2.55 0.00 44.52 1.40
240 241 2.588620 ACCTTGGCGTGGAACATTAAA 58.411 42.857 2.55 0.00 44.52 1.52
241 242 2.279935 ACCTTGGCGTGGAACATTAA 57.720 45.000 2.55 0.00 44.52 1.40
242 243 2.279935 AACCTTGGCGTGGAACATTA 57.720 45.000 2.55 0.00 44.52 1.90
243 244 1.408969 AAACCTTGGCGTGGAACATT 58.591 45.000 2.55 0.00 44.52 2.71
244 245 1.068434 CAAAACCTTGGCGTGGAACAT 59.932 47.619 2.55 0.00 44.52 2.71
245 246 0.457851 CAAAACCTTGGCGTGGAACA 59.542 50.000 2.55 0.00 35.74 3.18
246 247 0.249280 CCAAAACCTTGGCGTGGAAC 60.249 55.000 2.55 0.00 45.67 3.62
247 248 2.119886 CCAAAACCTTGGCGTGGAA 58.880 52.632 2.55 0.00 45.67 3.53
248 249 3.849064 CCAAAACCTTGGCGTGGA 58.151 55.556 2.55 0.00 45.67 4.02
283 284 8.353684 CCGTCTAGTAGATGTGTAAATCATCTT 58.646 37.037 16.49 0.90 46.39 2.40
285 286 7.872881 TCCGTCTAGTAGATGTGTAAATCATC 58.127 38.462 16.49 0.00 41.11 2.92
286 287 7.720074 TCTCCGTCTAGTAGATGTGTAAATCAT 59.280 37.037 16.49 0.00 29.27 2.45
287 288 7.052248 TCTCCGTCTAGTAGATGTGTAAATCA 58.948 38.462 16.49 0.00 29.27 2.57
288 289 7.441760 TCTCTCCGTCTAGTAGATGTGTAAATC 59.558 40.741 16.49 0.00 29.27 2.17
289 290 7.281098 TCTCTCCGTCTAGTAGATGTGTAAAT 58.719 38.462 16.49 0.00 29.27 1.40
290 291 6.647229 TCTCTCCGTCTAGTAGATGTGTAAA 58.353 40.000 16.49 0.00 29.27 2.01
291 292 6.127111 ACTCTCTCCGTCTAGTAGATGTGTAA 60.127 42.308 16.49 1.18 29.27 2.41
292 293 5.363292 ACTCTCTCCGTCTAGTAGATGTGTA 59.637 44.000 16.49 3.24 29.27 2.90
293 294 4.162698 ACTCTCTCCGTCTAGTAGATGTGT 59.837 45.833 16.49 4.77 29.27 3.72
294 295 4.699637 ACTCTCTCCGTCTAGTAGATGTG 58.300 47.826 16.49 9.93 29.27 3.21
295 296 5.599656 AGTACTCTCTCCGTCTAGTAGATGT 59.400 44.000 16.49 1.16 29.27 3.06
296 297 6.092955 AGTACTCTCTCCGTCTAGTAGATG 57.907 45.833 11.85 11.85 0.00 2.90
297 298 7.006509 ACTAGTACTCTCTCCGTCTAGTAGAT 58.993 42.308 0.00 0.00 37.10 1.98
298 299 6.364701 ACTAGTACTCTCTCCGTCTAGTAGA 58.635 44.000 0.00 0.00 37.10 2.59
299 300 6.639632 ACTAGTACTCTCTCCGTCTAGTAG 57.360 45.833 0.00 0.00 37.10 2.57
300 301 7.287061 ACTACTAGTACTCTCTCCGTCTAGTA 58.713 42.308 0.00 0.00 38.85 1.82
301 302 6.129179 ACTACTAGTACTCTCTCCGTCTAGT 58.871 44.000 0.00 0.00 40.35 2.57
302 303 6.639632 ACTACTAGTACTCTCTCCGTCTAG 57.360 45.833 0.00 0.00 0.00 2.43
303 304 7.504924 GTACTACTAGTACTCTCTCCGTCTA 57.495 44.000 16.30 0.00 45.70 2.59
304 305 6.391227 GTACTACTAGTACTCTCTCCGTCT 57.609 45.833 16.30 0.00 45.70 4.18
312 313 7.182568 AAGGAGTCCTTGTACTACTAGTACTCT 59.817 40.741 24.01 13.82 42.96 3.24
313 314 7.337938 AAGGAGTCCTTGTACTACTAGTACTC 58.662 42.308 24.01 13.91 42.96 2.59
322 323 8.877195 AGAAATAACAAAGGAGTCCTTGTACTA 58.123 33.333 25.25 13.93 43.92 1.82
356 357 2.667473 TCGAAGGAAAGGAATCCGTC 57.333 50.000 0.00 0.00 44.60 4.79
444 445 8.211629 GGATCTGCCTCTTTAGGTCTTTTTATA 58.788 37.037 0.00 0.00 45.64 0.98
445 446 7.057264 GGATCTGCCTCTTTAGGTCTTTTTAT 58.943 38.462 0.00 0.00 45.64 1.40
446 447 6.012858 TGGATCTGCCTCTTTAGGTCTTTTTA 60.013 38.462 0.00 0.00 45.64 1.52
449 450 3.846588 TGGATCTGCCTCTTTAGGTCTTT 59.153 43.478 0.00 0.00 45.64 2.52
450 451 3.454858 TGGATCTGCCTCTTTAGGTCTT 58.545 45.455 0.00 0.00 45.64 3.01
451 452 3.121929 TGGATCTGCCTCTTTAGGTCT 57.878 47.619 0.00 0.00 45.64 3.85
452 453 3.198853 AGTTGGATCTGCCTCTTTAGGTC 59.801 47.826 0.00 0.00 45.64 3.85
453 454 3.054802 CAGTTGGATCTGCCTCTTTAGGT 60.055 47.826 0.00 0.00 45.64 3.08
454 455 3.198635 TCAGTTGGATCTGCCTCTTTAGG 59.801 47.826 0.00 0.00 46.76 2.69
455 456 4.478206 TCAGTTGGATCTGCCTCTTTAG 57.522 45.455 0.00 0.00 37.63 1.85
467 468 1.071385 GATGGCCGAGATCAGTTGGAT 59.929 52.381 0.00 0.00 39.53 3.41
468 469 0.465705 GATGGCCGAGATCAGTTGGA 59.534 55.000 0.00 0.00 0.00 3.53
469 470 0.877649 CGATGGCCGAGATCAGTTGG 60.878 60.000 0.00 0.00 41.76 3.77
470 471 0.103026 TCGATGGCCGAGATCAGTTG 59.897 55.000 0.00 0.00 43.23 3.16
471 472 2.504920 TCGATGGCCGAGATCAGTT 58.495 52.632 0.00 0.00 43.23 3.16
472 473 4.259952 TCGATGGCCGAGATCAGT 57.740 55.556 0.00 0.00 43.23 3.41
479 480 1.079405 GACTTGGTTCGATGGCCGA 60.079 57.895 0.00 0.00 46.94 5.54
480 481 0.953471 TTGACTTGGTTCGATGGCCG 60.953 55.000 0.00 0.00 40.25 6.13
481 482 1.401905 GATTGACTTGGTTCGATGGCC 59.598 52.381 0.00 0.00 0.00 5.36
482 483 1.401905 GGATTGACTTGGTTCGATGGC 59.598 52.381 0.00 0.00 0.00 4.40
483 484 2.710377 TGGATTGACTTGGTTCGATGG 58.290 47.619 0.00 0.00 0.00 3.51
484 485 3.424829 CGTTGGATTGACTTGGTTCGATG 60.425 47.826 0.00 0.00 0.00 3.84
485 486 2.742053 CGTTGGATTGACTTGGTTCGAT 59.258 45.455 0.00 0.00 0.00 3.59
486 487 2.139917 CGTTGGATTGACTTGGTTCGA 58.860 47.619 0.00 0.00 0.00 3.71
487 488 2.096417 GTCGTTGGATTGACTTGGTTCG 60.096 50.000 0.00 0.00 32.37 3.95
488 489 2.225727 GGTCGTTGGATTGACTTGGTTC 59.774 50.000 0.00 0.00 35.45 3.62
489 490 2.158667 AGGTCGTTGGATTGACTTGGTT 60.159 45.455 0.00 0.00 35.45 3.67
490 491 1.420138 AGGTCGTTGGATTGACTTGGT 59.580 47.619 0.00 0.00 35.45 3.67
491 492 2.185004 AGGTCGTTGGATTGACTTGG 57.815 50.000 0.00 0.00 35.45 3.61
492 493 3.927142 GTCTAGGTCGTTGGATTGACTTG 59.073 47.826 0.00 0.00 35.45 3.16
493 494 3.833070 AGTCTAGGTCGTTGGATTGACTT 59.167 43.478 0.00 0.00 35.45 3.01
494 495 3.193691 CAGTCTAGGTCGTTGGATTGACT 59.806 47.826 0.00 0.00 35.45 3.41
495 496 3.512680 CAGTCTAGGTCGTTGGATTGAC 58.487 50.000 0.00 0.00 0.00 3.18
496 497 2.094182 GCAGTCTAGGTCGTTGGATTGA 60.094 50.000 0.00 0.00 0.00 2.57
497 498 2.093973 AGCAGTCTAGGTCGTTGGATTG 60.094 50.000 0.00 0.00 0.00 2.67
498 499 2.166664 GAGCAGTCTAGGTCGTTGGATT 59.833 50.000 0.00 0.00 0.00 3.01
499 500 1.751924 GAGCAGTCTAGGTCGTTGGAT 59.248 52.381 0.00 0.00 0.00 3.41
500 501 1.174783 GAGCAGTCTAGGTCGTTGGA 58.825 55.000 0.00 0.00 0.00 3.53
501 502 0.173708 GGAGCAGTCTAGGTCGTTGG 59.826 60.000 0.00 0.00 36.90 3.77
502 503 0.888619 TGGAGCAGTCTAGGTCGTTG 59.111 55.000 0.00 0.00 36.90 4.10
503 504 1.629043 TTGGAGCAGTCTAGGTCGTT 58.371 50.000 0.00 0.00 36.90 3.85
504 505 1.478510 CATTGGAGCAGTCTAGGTCGT 59.521 52.381 0.00 0.00 36.90 4.34
505 506 1.202463 CCATTGGAGCAGTCTAGGTCG 60.202 57.143 0.00 0.00 36.90 4.79
506 507 1.474143 GCCATTGGAGCAGTCTAGGTC 60.474 57.143 6.95 0.00 35.36 3.85
507 508 0.543749 GCCATTGGAGCAGTCTAGGT 59.456 55.000 6.95 0.00 0.00 3.08
508 509 0.531532 CGCCATTGGAGCAGTCTAGG 60.532 60.000 6.95 0.00 0.00 3.02
509 510 0.461548 TCGCCATTGGAGCAGTCTAG 59.538 55.000 6.95 0.00 0.00 2.43
510 511 0.461548 CTCGCCATTGGAGCAGTCTA 59.538 55.000 6.95 0.00 0.00 2.59
511 512 1.220206 CTCGCCATTGGAGCAGTCT 59.780 57.895 6.95 0.00 0.00 3.24
512 513 3.805267 CTCGCCATTGGAGCAGTC 58.195 61.111 6.95 0.00 0.00 3.51
517 518 1.083489 TTTAACGCTCGCCATTGGAG 58.917 50.000 6.95 2.84 34.62 3.86
518 519 0.800012 GTTTAACGCTCGCCATTGGA 59.200 50.000 6.95 0.00 0.00 3.53
519 520 0.520412 CGTTTAACGCTCGCCATTGG 60.520 55.000 4.11 0.00 33.65 3.16
520 521 2.911198 CGTTTAACGCTCGCCATTG 58.089 52.632 4.11 0.00 33.65 2.82
538 539 7.600039 CATGCTATTAATTGCACGTTAAACAC 58.400 34.615 23.67 2.34 40.99 3.32
539 540 6.252441 GCATGCTATTAATTGCACGTTAAACA 59.748 34.615 23.67 1.60 40.99 2.83
540 541 6.291585 GGCATGCTATTAATTGCACGTTAAAC 60.292 38.462 23.67 10.08 40.99 2.01
541 542 5.746245 GGCATGCTATTAATTGCACGTTAAA 59.254 36.000 23.67 2.94 40.99 1.52
542 543 5.163612 TGGCATGCTATTAATTGCACGTTAA 60.164 36.000 23.67 8.77 40.99 2.01
543 544 4.336713 TGGCATGCTATTAATTGCACGTTA 59.663 37.500 23.67 10.53 40.99 3.18
544 545 3.130164 TGGCATGCTATTAATTGCACGTT 59.870 39.130 23.67 8.42 40.99 3.99
545 546 2.687425 TGGCATGCTATTAATTGCACGT 59.313 40.909 23.67 9.08 40.99 4.49
546 547 3.352554 TGGCATGCTATTAATTGCACG 57.647 42.857 23.67 18.12 40.99 5.34
547 548 7.894376 ATATTTGGCATGCTATTAATTGCAC 57.106 32.000 23.67 13.58 40.99 4.57
548 549 9.421806 GTAATATTTGGCATGCTATTAATTGCA 57.578 29.630 23.47 23.47 42.25 4.08
549 550 9.421806 TGTAATATTTGGCATGCTATTAATTGC 57.578 29.630 18.92 14.01 0.00 3.56
556 557 9.519191 TGATTAGTGTAATATTTGGCATGCTAT 57.481 29.630 18.92 11.19 0.00 2.97
557 558 8.783093 GTGATTAGTGTAATATTTGGCATGCTA 58.217 33.333 18.92 9.16 0.00 3.49
558 559 7.285172 TGTGATTAGTGTAATATTTGGCATGCT 59.715 33.333 18.92 0.00 0.00 3.79
559 560 7.424803 TGTGATTAGTGTAATATTTGGCATGC 58.575 34.615 9.90 9.90 0.00 4.06
560 561 9.800433 TTTGTGATTAGTGTAATATTTGGCATG 57.200 29.630 0.00 0.00 0.00 4.06
598 599 9.817809 CACGTGGATATTAGGTATGCTATTATT 57.182 33.333 7.95 0.00 32.76 1.40
599 600 7.926555 GCACGTGGATATTAGGTATGCTATTAT 59.073 37.037 18.88 0.00 32.76 1.28
600 601 7.093684 TGCACGTGGATATTAGGTATGCTATTA 60.094 37.037 18.88 0.00 32.76 0.98
601 602 6.106673 GCACGTGGATATTAGGTATGCTATT 58.893 40.000 18.88 0.00 32.76 1.73
602 603 5.186992 TGCACGTGGATATTAGGTATGCTAT 59.813 40.000 18.88 0.00 32.76 2.97
603 604 4.525100 TGCACGTGGATATTAGGTATGCTA 59.475 41.667 18.88 0.00 32.76 3.49
604 605 3.323691 TGCACGTGGATATTAGGTATGCT 59.676 43.478 18.88 0.00 32.76 3.79
605 606 3.659786 TGCACGTGGATATTAGGTATGC 58.340 45.455 18.88 0.00 0.00 3.14
606 607 6.801539 AATTGCACGTGGATATTAGGTATG 57.198 37.500 18.88 0.00 0.00 2.39
633 634 9.624697 CAATGCACGTTAATATTTAGGCAATAT 57.375 29.630 0.00 0.00 39.43 1.28
634 635 7.593273 GCAATGCACGTTAATATTTAGGCAATA 59.407 33.333 0.00 0.00 33.33 1.90
635 636 6.420604 GCAATGCACGTTAATATTTAGGCAAT 59.579 34.615 0.00 0.00 33.33 3.56
636 637 5.746245 GCAATGCACGTTAATATTTAGGCAA 59.254 36.000 0.00 0.00 33.33 4.52
637 638 5.163612 TGCAATGCACGTTAATATTTAGGCA 60.164 36.000 2.72 0.00 31.71 4.75
638 639 5.277825 TGCAATGCACGTTAATATTTAGGC 58.722 37.500 2.72 0.00 31.71 3.93
659 660 0.719465 ACTAGTAAATGCGCACGTGC 59.281 50.000 30.42 30.42 37.78 5.34
660 661 1.989864 TCACTAGTAAATGCGCACGTG 59.010 47.619 14.90 12.28 0.00 4.49
661 662 2.357327 TCACTAGTAAATGCGCACGT 57.643 45.000 14.90 5.96 0.00 4.49
662 663 3.715618 TTTCACTAGTAAATGCGCACG 57.284 42.857 14.90 0.00 0.00 5.34
663 664 5.277601 TCTTTTCACTAGTAAATGCGCAC 57.722 39.130 14.90 0.00 0.00 5.34
664 665 5.933187 TTCTTTTCACTAGTAAATGCGCA 57.067 34.783 14.96 14.96 0.00 6.09
665 666 7.166804 TGTTTTTCTTTTCACTAGTAAATGCGC 59.833 33.333 0.00 0.00 0.00 6.09
666 667 8.555166 TGTTTTTCTTTTCACTAGTAAATGCG 57.445 30.769 0.00 0.00 0.00 4.73
682 683 9.366216 GTGTCTGGAAATTAAGTTGTTTTTCTT 57.634 29.630 0.00 0.00 0.00 2.52
684 685 7.762159 TGGTGTCTGGAAATTAAGTTGTTTTTC 59.238 33.333 0.00 0.00 0.00 2.29
688 689 5.220970 CGTGGTGTCTGGAAATTAAGTTGTT 60.221 40.000 0.00 0.00 0.00 2.83
873 878 1.624336 TTCGGGAGAACGAGAAGGAA 58.376 50.000 0.00 0.00 45.39 3.36
956 961 0.102663 GAGGGTTCCGGTCGAGATTC 59.897 60.000 0.00 0.00 0.00 2.52
996 1001 1.095807 GGTCCTTGTTCGCCATAGGC 61.096 60.000 0.00 0.00 46.75 3.93
1047 1052 3.885521 CGGCGGTAGGTCGGAGTC 61.886 72.222 0.00 0.00 40.91 3.36
1449 1457 1.931007 GCTGGAAGAGGGCCAAGGAT 61.931 60.000 6.18 0.00 34.07 3.24
1471 1479 4.115199 GTGGAGCTTCCCGGCCAT 62.115 66.667 2.24 0.00 35.03 4.40
1585 1593 1.591703 CGCACCTGTAGAGGCTGAA 59.408 57.895 5.68 0.00 44.33 3.02
1617 1625 2.481854 GTCATGGAGAGCATGCAGTAG 58.518 52.381 21.98 2.84 30.11 2.57
1653 1661 2.811317 CGCGGCAGGAACAGAGAC 60.811 66.667 0.00 0.00 0.00 3.36
1827 1835 5.754406 CCAAAAACAGCATCAAAAGATGACA 59.246 36.000 9.49 0.00 41.93 3.58
1897 1909 4.334443 CGCCTGAAGAACAACAATTATCG 58.666 43.478 0.00 0.00 0.00 2.92
1902 1938 0.598065 GCCGCCTGAAGAACAACAAT 59.402 50.000 0.00 0.00 0.00 2.71
1914 1950 0.738389 AATTGAATAACGGCCGCCTG 59.262 50.000 28.58 0.00 0.00 4.85
1918 1954 3.175929 GGAACAAATTGAATAACGGCCG 58.824 45.455 26.86 26.86 0.00 6.13
1920 1956 4.157840 AGAGGGAACAAATTGAATAACGGC 59.842 41.667 0.00 0.00 0.00 5.68
1931 1967 9.396022 CTATACACACAAATAGAGGGAACAAAT 57.604 33.333 0.00 0.00 0.00 2.32
1940 1976 5.359756 TGCAGCCTATACACACAAATAGAG 58.640 41.667 0.00 0.00 0.00 2.43
1944 1980 4.220693 TCTGCAGCCTATACACACAAAT 57.779 40.909 9.47 0.00 0.00 2.32
1945 1981 3.694043 TCTGCAGCCTATACACACAAA 57.306 42.857 9.47 0.00 0.00 2.83
1947 1983 2.103094 GGATCTGCAGCCTATACACACA 59.897 50.000 9.47 0.00 0.00 3.72
1948 1984 2.103094 TGGATCTGCAGCCTATACACAC 59.897 50.000 9.47 0.00 0.00 3.82
1967 2003 3.056393 TGGCAAAAGATTTCTGAGCATGG 60.056 43.478 0.00 0.00 0.00 3.66
2004 2040 1.614903 CCAATGACTGCTCAAAGGCAA 59.385 47.619 0.00 0.00 39.12 4.52
2014 2050 2.352127 GCAAAACCTCTCCAATGACTGC 60.352 50.000 0.00 0.00 0.00 4.40
2083 2119 9.574516 AATTAATAAAGGATAGCAACCAGTAGG 57.425 33.333 0.00 0.00 42.21 3.18
2089 2125 7.860872 CGGAACAATTAATAAAGGATAGCAACC 59.139 37.037 0.00 0.00 0.00 3.77
2106 2142 2.302587 ACCATTGGACCGGAACAATT 57.697 45.000 20.37 9.05 35.26 2.32
2107 2143 2.718563 GTACCATTGGACCGGAACAAT 58.281 47.619 9.46 15.41 37.78 2.71
2108 2144 1.608542 CGTACCATTGGACCGGAACAA 60.609 52.381 9.46 13.57 0.00 2.83
2109 2145 0.037139 CGTACCATTGGACCGGAACA 60.037 55.000 9.46 2.96 0.00 3.18
2120 2156 4.833380 AGATCTATACAGTGCCGTACCATT 59.167 41.667 0.00 0.00 0.00 3.16
2123 2159 5.954296 TTAGATCTATACAGTGCCGTACC 57.046 43.478 2.58 0.00 0.00 3.34
2126 2162 5.304614 ACCAATTAGATCTATACAGTGCCGT 59.695 40.000 2.58 0.00 0.00 5.68
2197 5258 3.585862 TCAGCGAGACCTGATTGTTTAC 58.414 45.455 0.00 0.00 36.96 2.01
2208 5269 1.662629 CATCAACACATCAGCGAGACC 59.337 52.381 0.00 0.00 0.00 3.85
2292 5357 5.536260 TGAAGATGTTCTCTGACAGACAAG 58.464 41.667 0.00 0.00 33.29 3.16
2297 5362 6.365789 GTCTCTTTGAAGATGTTCTCTGACAG 59.634 42.308 4.03 0.00 33.29 3.51
2298 5363 6.219473 GTCTCTTTGAAGATGTTCTCTGACA 58.781 40.000 4.03 0.00 33.29 3.58
2299 5364 5.637387 GGTCTCTTTGAAGATGTTCTCTGAC 59.363 44.000 4.03 5.52 33.29 3.51
2300 5365 5.279708 GGGTCTCTTTGAAGATGTTCTCTGA 60.280 44.000 4.03 0.00 33.29 3.27
2301 5366 4.934602 GGGTCTCTTTGAAGATGTTCTCTG 59.065 45.833 4.03 0.00 33.29 3.35
2337 5402 3.057526 GCCCTAAAGTAAGGCAGTTGTTG 60.058 47.826 0.00 0.00 46.34 3.33
2338 5403 3.154710 GCCCTAAAGTAAGGCAGTTGTT 58.845 45.455 0.00 0.00 46.34 2.83
2339 5404 2.791655 GCCCTAAAGTAAGGCAGTTGT 58.208 47.619 0.00 0.00 46.34 3.32
2381 5446 5.754543 AAAACAGTTTTCATGCCCAAATG 57.245 34.783 5.37 0.00 0.00 2.32
2419 5484 1.961277 CTGTTGGAGACGGCGCTTT 60.961 57.895 6.90 0.00 0.00 3.51
2458 5523 2.005370 AGGTTCAGTTCGGGTCAGTA 57.995 50.000 0.00 0.00 0.00 2.74
2462 5527 1.617357 ACAGTAGGTTCAGTTCGGGTC 59.383 52.381 0.00 0.00 0.00 4.46
2474 5539 4.618920 AAGTTCCGAATTGACAGTAGGT 57.381 40.909 0.00 0.00 0.00 3.08
2489 5554 3.135994 TCAGTTTCGGCTGTTAAGTTCC 58.864 45.455 0.00 0.00 37.70 3.62
2502 5567 5.577164 CAGGGTAATCTGTACTTCAGTTTCG 59.423 44.000 0.00 0.00 43.97 3.46
2509 5574 5.128008 AGAAGAGCAGGGTAATCTGTACTTC 59.872 44.000 16.56 16.56 42.11 3.01
2527 6301 6.481644 GTGCTTACTTATTGGATGGAGAAGAG 59.518 42.308 0.00 0.00 0.00 2.85
2720 6528 4.060038 TCCAAGTCACACAAGAGAACTC 57.940 45.455 0.00 0.00 0.00 3.01
2770 6579 4.286910 TCGCAGCACTTTGTTTAAACATC 58.713 39.130 21.17 8.84 38.95 3.06
2788 6597 6.146184 CAGAAGAAGAATTTAGTTCACTCGCA 59.854 38.462 0.00 0.00 39.39 5.10
2795 6604 9.495572 TTTCTCCTCAGAAGAAGAATTTAGTTC 57.504 33.333 0.00 0.00 39.90 3.01
2810 6709 5.305386 TGATCAAGACAACTTTCTCCTCAGA 59.695 40.000 0.00 0.00 33.70 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.