Multiple sequence alignment - TraesCS4A01G320800
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS4A01G320800 | chr4A | 100.000 | 3223 | 0 | 0 | 3341 | 6563 | 609082294 | 609079072 | 0.000000e+00 | 5952.0 |
1 | TraesCS4A01G320800 | chr4A | 100.000 | 1720 | 0 | 0 | 1 | 1720 | 609085634 | 609083915 | 0.000000e+00 | 3177.0 |
2 | TraesCS4A01G320800 | chr4A | 100.000 | 1002 | 0 | 0 | 2025 | 3026 | 609083610 | 609082609 | 0.000000e+00 | 1851.0 |
3 | TraesCS4A01G320800 | chr4A | 78.082 | 365 | 50 | 17 | 3576 | 3916 | 607184919 | 607185277 | 3.100000e-48 | 204.0 |
4 | TraesCS4A01G320800 | chr5B | 93.681 | 2532 | 120 | 19 | 4046 | 6563 | 705620516 | 705623021 | 0.000000e+00 | 3753.0 |
5 | TraesCS4A01G320800 | chr5B | 92.061 | 1121 | 38 | 24 | 629 | 1716 | 705616826 | 705617928 | 0.000000e+00 | 1530.0 |
6 | TraesCS4A01G320800 | chr5B | 93.804 | 1033 | 33 | 10 | 2025 | 3026 | 705618071 | 705619103 | 0.000000e+00 | 1524.0 |
7 | TraesCS4A01G320800 | chr5B | 89.951 | 617 | 53 | 4 | 3352 | 3967 | 705619395 | 705620003 | 0.000000e+00 | 787.0 |
8 | TraesCS4A01G320800 | chr5B | 91.003 | 289 | 18 | 5 | 181 | 468 | 677665015 | 677664734 | 3.710000e-102 | 383.0 |
9 | TraesCS4A01G320800 | chr5B | 86.321 | 212 | 25 | 4 | 3579 | 3788 | 119120491 | 119120700 | 1.840000e-55 | 228.0 |
10 | TraesCS4A01G320800 | chr5B | 83.333 | 216 | 26 | 6 | 3576 | 3788 | 170678525 | 170678733 | 2.420000e-44 | 191.0 |
11 | TraesCS4A01G320800 | chr5B | 98.039 | 51 | 0 | 1 | 3967 | 4016 | 705620055 | 705620105 | 3.260000e-13 | 87.9 |
12 | TraesCS4A01G320800 | chr5D | 93.123 | 2530 | 137 | 22 | 4046 | 6563 | 563401632 | 563404136 | 0.000000e+00 | 3674.0 |
13 | TraesCS4A01G320800 | chr5D | 90.785 | 1096 | 42 | 17 | 629 | 1720 | 563398397 | 563399437 | 0.000000e+00 | 1410.0 |
14 | TraesCS4A01G320800 | chr5D | 91.710 | 772 | 27 | 15 | 2282 | 3026 | 563400036 | 563400797 | 0.000000e+00 | 1037.0 |
15 | TraesCS4A01G320800 | chr5D | 86.427 | 641 | 50 | 13 | 3352 | 3967 | 563400828 | 563401456 | 0.000000e+00 | 667.0 |
16 | TraesCS4A01G320800 | chr5D | 81.138 | 334 | 38 | 15 | 3587 | 3898 | 108374098 | 108374428 | 1.830000e-60 | 244.0 |
17 | TraesCS4A01G320800 | chr5D | 79.916 | 239 | 25 | 10 | 3685 | 3901 | 386952544 | 386952781 | 3.170000e-33 | 154.0 |
18 | TraesCS4A01G320800 | chr5D | 82.692 | 156 | 22 | 4 | 5603 | 5757 | 114623950 | 114623799 | 4.130000e-27 | 134.0 |
19 | TraesCS4A01G320800 | chr5A | 93.151 | 292 | 19 | 1 | 178 | 468 | 577949991 | 577950282 | 1.690000e-115 | 427.0 |
20 | TraesCS4A01G320800 | chr5A | 96.154 | 182 | 7 | 0 | 1 | 182 | 312274106 | 312273925 | 1.380000e-76 | 298.0 |
21 | TraesCS4A01G320800 | chr5A | 98.969 | 97 | 1 | 0 | 514 | 610 | 577950266 | 577950362 | 2.430000e-39 | 174.0 |
22 | TraesCS4A01G320800 | chr5A | 81.657 | 169 | 26 | 4 | 5594 | 5761 | 633991711 | 633991875 | 1.150000e-27 | 135.0 |
23 | TraesCS4A01G320800 | chr7A | 93.706 | 286 | 14 | 3 | 181 | 465 | 725215423 | 725215141 | 6.080000e-115 | 425.0 |
24 | TraesCS4A01G320800 | chr7A | 95.556 | 180 | 8 | 0 | 1 | 180 | 191173012 | 191172833 | 8.330000e-74 | 289.0 |
25 | TraesCS4A01G320800 | chr7A | 86.957 | 115 | 14 | 1 | 3788 | 3901 | 249286174 | 249286060 | 1.920000e-25 | 128.0 |
26 | TraesCS4A01G320800 | chr7A | 100.000 | 31 | 0 | 0 | 581 | 611 | 725215059 | 725215029 | 2.560000e-04 | 58.4 |
27 | TraesCS4A01G320800 | chr6A | 93.080 | 289 | 19 | 1 | 181 | 468 | 287306286 | 287305998 | 7.870000e-114 | 422.0 |
28 | TraesCS4A01G320800 | chr6A | 82.081 | 173 | 27 | 3 | 5587 | 5759 | 609592946 | 609593114 | 1.910000e-30 | 145.0 |
29 | TraesCS4A01G320800 | chr1B | 92.759 | 290 | 19 | 2 | 181 | 468 | 69353587 | 69353298 | 1.020000e-112 | 418.0 |
30 | TraesCS4A01G320800 | chr1B | 96.907 | 97 | 3 | 0 | 517 | 613 | 69353311 | 69353215 | 5.270000e-36 | 163.0 |
31 | TraesCS4A01G320800 | chr1B | 82.692 | 156 | 25 | 2 | 5602 | 5757 | 585678072 | 585678225 | 3.190000e-28 | 137.0 |
32 | TraesCS4A01G320800 | chr3B | 90.785 | 293 | 21 | 5 | 181 | 468 | 765087583 | 765087292 | 2.870000e-103 | 387.0 |
33 | TraesCS4A01G320800 | chr3B | 90.164 | 61 | 6 | 0 | 3586 | 3646 | 18471818 | 18471758 | 5.460000e-11 | 80.5 |
34 | TraesCS4A01G320800 | chr6D | 90.508 | 295 | 23 | 5 | 178 | 468 | 436731100 | 436731393 | 1.030000e-102 | 385.0 |
35 | TraesCS4A01G320800 | chr6D | 81.579 | 228 | 19 | 10 | 3693 | 3898 | 3495192 | 3495418 | 4.070000e-37 | 167.0 |
36 | TraesCS4A01G320800 | chr6D | 79.508 | 244 | 25 | 13 | 3677 | 3898 | 450353526 | 450353286 | 4.100000e-32 | 150.0 |
37 | TraesCS4A01G320800 | chr6D | 80.184 | 217 | 20 | 6 | 3710 | 3904 | 387789466 | 387789681 | 2.470000e-29 | 141.0 |
38 | TraesCS4A01G320800 | chr6D | 90.476 | 105 | 8 | 2 | 3685 | 3788 | 379757642 | 379757539 | 3.190000e-28 | 137.0 |
39 | TraesCS4A01G320800 | chr2A | 90.068 | 292 | 24 | 5 | 181 | 468 | 51660520 | 51660230 | 2.230000e-99 | 374.0 |
40 | TraesCS4A01G320800 | chr2A | 95.082 | 183 | 8 | 1 | 1 | 182 | 615490270 | 615490452 | 2.990000e-73 | 287.0 |
41 | TraesCS4A01G320800 | chr2A | 89.583 | 96 | 9 | 1 | 517 | 612 | 85811668 | 85811574 | 3.210000e-23 | 121.0 |
42 | TraesCS4A01G320800 | chr1A | 90.068 | 292 | 24 | 5 | 181 | 468 | 409958087 | 409957797 | 2.230000e-99 | 374.0 |
43 | TraesCS4A01G320800 | chr1A | 95.000 | 180 | 9 | 0 | 1 | 180 | 104433835 | 104434014 | 3.870000e-72 | 283.0 |
44 | TraesCS4A01G320800 | chr1A | 95.000 | 180 | 9 | 0 | 1 | 180 | 262930836 | 262931015 | 3.870000e-72 | 283.0 |
45 | TraesCS4A01G320800 | chr1A | 96.970 | 99 | 3 | 0 | 514 | 612 | 471708236 | 471708334 | 4.070000e-37 | 167.0 |
46 | TraesCS4A01G320800 | chr1D | 97.778 | 180 | 4 | 0 | 1 | 180 | 267592485 | 267592306 | 1.780000e-80 | 311.0 |
47 | TraesCS4A01G320800 | chr1D | 76.991 | 339 | 46 | 16 | 3586 | 3904 | 461206779 | 461206453 | 1.460000e-36 | 165.0 |
48 | TraesCS4A01G320800 | chr6B | 97.765 | 179 | 4 | 0 | 2 | 180 | 26784246 | 26784068 | 6.390000e-80 | 309.0 |
49 | TraesCS4A01G320800 | chr6B | 81.166 | 223 | 16 | 8 | 3590 | 3788 | 22713291 | 22713511 | 8.810000e-34 | 156.0 |
50 | TraesCS4A01G320800 | chr6B | 81.325 | 166 | 27 | 3 | 5594 | 5758 | 192060108 | 192059946 | 1.480000e-26 | 132.0 |
51 | TraesCS4A01G320800 | chr3A | 84.084 | 333 | 31 | 10 | 3588 | 3898 | 423974028 | 423974360 | 1.070000e-77 | 302.0 |
52 | TraesCS4A01G320800 | chr3A | 96.685 | 181 | 6 | 0 | 1 | 181 | 696065053 | 696065233 | 1.070000e-77 | 302.0 |
53 | TraesCS4A01G320800 | chr7D | 95.580 | 181 | 6 | 2 | 1 | 180 | 52945011 | 52945190 | 8.330000e-74 | 289.0 |
54 | TraesCS4A01G320800 | chr2B | 81.050 | 343 | 35 | 18 | 3579 | 3898 | 120534902 | 120535237 | 5.080000e-61 | 246.0 |
55 | TraesCS4A01G320800 | chr2B | 79.098 | 244 | 25 | 13 | 3676 | 3898 | 26716762 | 26717000 | 1.910000e-30 | 145.0 |
56 | TraesCS4A01G320800 | chr4B | 77.297 | 370 | 40 | 15 | 3576 | 3902 | 387336988 | 387337356 | 1.880000e-40 | 178.0 |
57 | TraesCS4A01G320800 | chr7B | 82.738 | 168 | 24 | 4 | 5591 | 5757 | 289266399 | 289266236 | 1.910000e-30 | 145.0 |
58 | TraesCS4A01G320800 | chr2D | 81.287 | 171 | 25 | 6 | 5589 | 5757 | 95517325 | 95517490 | 1.480000e-26 | 132.0 |
59 | TraesCS4A01G320800 | chr3D | 100.000 | 28 | 0 | 0 | 1514 | 1541 | 355425974 | 355426001 | 1.200000e-02 | 52.8 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS4A01G320800 | chr4A | 609079072 | 609085634 | 6562 | True | 3660.00 | 5952 | 100.00000 | 1 | 6563 | 3 | chr4A.!!$R1 | 6562 |
1 | TraesCS4A01G320800 | chr5B | 705616826 | 705623021 | 6195 | False | 1536.38 | 3753 | 93.50720 | 629 | 6563 | 5 | chr5B.!!$F3 | 5934 |
2 | TraesCS4A01G320800 | chr5D | 563398397 | 563404136 | 5739 | False | 1697.00 | 3674 | 90.51125 | 629 | 6563 | 4 | chr5D.!!$F3 | 5934 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
621 | 622 | 0.030638 | GCACTTTTCGAGCTTGCCAA | 59.969 | 50.000 | 0.00 | 0.0 | 0.00 | 4.52 | F |
826 | 829 | 0.321122 | CCAACAGTGTCCTGAGCTCC | 60.321 | 60.000 | 12.15 | 0.0 | 41.50 | 4.70 | F |
1015 | 1018 | 0.780637 | TCCCCCTACCAAATTGTGCA | 59.219 | 50.000 | 0.00 | 0.0 | 0.00 | 4.57 | F |
1653 | 1697 | 1.064946 | CGGCTCCTCGTCATCAGAC | 59.935 | 63.158 | 0.00 | 0.0 | 41.46 | 3.51 | F |
2962 | 3293 | 0.179137 | CGGAGAGTAGCACGCAATGA | 60.179 | 55.000 | 0.00 | 0.0 | 0.00 | 2.57 | F |
3635 | 3970 | 0.109272 | TGCTAACTTCTGACGAGCGG | 60.109 | 55.000 | 0.00 | 0.0 | 35.88 | 5.52 | F |
5085 | 5892 | 1.107114 | ACGTCGAGCAGATCAATCCT | 58.893 | 50.000 | 0.00 | 0.0 | 0.00 | 3.24 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1644 | 1688 | 1.478510 | ACCTGGTGATCGTCTGATGAC | 59.521 | 52.381 | 0.00 | 0.00 | 37.92 | 3.06 | R |
2819 | 3150 | 5.182190 | TGAAACACTGCAAGAAACACTAACA | 59.818 | 36.000 | 0.00 | 0.00 | 37.43 | 2.41 | R |
2962 | 3293 | 1.004745 | CAAGGTGCCAAGAGGGTGTAT | 59.995 | 52.381 | 0.00 | 0.00 | 39.65 | 2.29 | R |
3345 | 3676 | 0.104037 | TGTAACCCCAACCCTACCCA | 60.104 | 55.000 | 0.00 | 0.00 | 0.00 | 4.51 | R |
4016 | 4447 | 0.451783 | CAGCAACTATTTGGGACGCC | 59.548 | 55.000 | 0.00 | 0.00 | 32.81 | 5.68 | R |
5234 | 6041 | 1.136992 | CGTAGACGTTTGCACTTGTCG | 60.137 | 52.381 | 0.00 | 1.01 | 36.49 | 4.35 | R |
6441 | 7264 | 1.076332 | GCAACGACGGTATCTTGCTT | 58.924 | 50.000 | 11.55 | 0.00 | 37.93 | 3.91 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
126 | 127 | 9.771534 | TTTTGAGTTATGGAAAAGGTATTTTGG | 57.228 | 29.630 | 0.00 | 0.00 | 38.74 | 3.28 |
127 | 128 | 6.930731 | TGAGTTATGGAAAAGGTATTTTGGC | 58.069 | 36.000 | 0.00 | 0.00 | 38.74 | 4.52 |
128 | 129 | 6.723977 | TGAGTTATGGAAAAGGTATTTTGGCT | 59.276 | 34.615 | 0.00 | 0.00 | 38.74 | 4.75 |
129 | 130 | 6.935167 | AGTTATGGAAAAGGTATTTTGGCTG | 58.065 | 36.000 | 0.00 | 0.00 | 38.74 | 4.85 |
130 | 131 | 6.723977 | AGTTATGGAAAAGGTATTTTGGCTGA | 59.276 | 34.615 | 0.00 | 0.00 | 38.74 | 4.26 |
131 | 132 | 7.400052 | AGTTATGGAAAAGGTATTTTGGCTGAT | 59.600 | 33.333 | 0.00 | 0.00 | 38.74 | 2.90 |
132 | 133 | 8.691797 | GTTATGGAAAAGGTATTTTGGCTGATA | 58.308 | 33.333 | 0.00 | 0.00 | 38.74 | 2.15 |
133 | 134 | 7.732222 | ATGGAAAAGGTATTTTGGCTGATAA | 57.268 | 32.000 | 0.00 | 0.00 | 38.74 | 1.75 |
134 | 135 | 7.546250 | TGGAAAAGGTATTTTGGCTGATAAA | 57.454 | 32.000 | 0.00 | 0.00 | 38.74 | 1.40 |
135 | 136 | 8.144862 | TGGAAAAGGTATTTTGGCTGATAAAT | 57.855 | 30.769 | 0.00 | 0.00 | 38.74 | 1.40 |
136 | 137 | 8.040132 | TGGAAAAGGTATTTTGGCTGATAAATG | 58.960 | 33.333 | 0.00 | 0.00 | 38.74 | 2.32 |
137 | 138 | 8.040727 | GGAAAAGGTATTTTGGCTGATAAATGT | 58.959 | 33.333 | 0.00 | 0.00 | 38.74 | 2.71 |
146 | 147 | 7.938140 | TTTGGCTGATAAATGTATATAGGGC | 57.062 | 36.000 | 0.00 | 0.00 | 0.00 | 5.19 |
147 | 148 | 6.891306 | TGGCTGATAAATGTATATAGGGCT | 57.109 | 37.500 | 0.00 | 0.00 | 0.00 | 5.19 |
148 | 149 | 6.889198 | TGGCTGATAAATGTATATAGGGCTC | 58.111 | 40.000 | 0.00 | 0.00 | 0.00 | 4.70 |
149 | 150 | 6.443527 | TGGCTGATAAATGTATATAGGGCTCA | 59.556 | 38.462 | 0.00 | 0.00 | 0.00 | 4.26 |
150 | 151 | 7.037658 | TGGCTGATAAATGTATATAGGGCTCAA | 60.038 | 37.037 | 0.00 | 0.00 | 0.00 | 3.02 |
151 | 152 | 7.995488 | GGCTGATAAATGTATATAGGGCTCAAT | 59.005 | 37.037 | 0.00 | 0.00 | 0.00 | 2.57 |
152 | 153 | 8.834465 | GCTGATAAATGTATATAGGGCTCAATG | 58.166 | 37.037 | 0.00 | 0.00 | 0.00 | 2.82 |
153 | 154 | 9.334947 | CTGATAAATGTATATAGGGCTCAATGG | 57.665 | 37.037 | 0.00 | 0.00 | 0.00 | 3.16 |
154 | 155 | 9.056799 | TGATAAATGTATATAGGGCTCAATGGA | 57.943 | 33.333 | 0.00 | 0.00 | 0.00 | 3.41 |
155 | 156 | 9.553064 | GATAAATGTATATAGGGCTCAATGGAG | 57.447 | 37.037 | 0.00 | 0.00 | 44.33 | 3.86 |
163 | 164 | 2.906458 | CTCAATGGAGCTCGGCCT | 59.094 | 61.111 | 7.83 | 0.00 | 33.67 | 5.19 |
164 | 165 | 1.227497 | CTCAATGGAGCTCGGCCTC | 60.227 | 63.158 | 7.83 | 0.00 | 33.67 | 4.70 |
165 | 166 | 1.684386 | CTCAATGGAGCTCGGCCTCT | 61.684 | 60.000 | 7.83 | 0.00 | 33.67 | 3.69 |
166 | 167 | 1.523258 | CAATGGAGCTCGGCCTCTG | 60.523 | 63.158 | 7.83 | 0.00 | 32.43 | 3.35 |
167 | 168 | 3.397613 | AATGGAGCTCGGCCTCTGC | 62.398 | 63.158 | 7.83 | 1.79 | 32.43 | 4.26 |
169 | 170 | 4.527583 | GGAGCTCGGCCTCTGCAG | 62.528 | 72.222 | 7.63 | 7.63 | 40.13 | 4.41 |
177 | 178 | 3.769201 | GCCTCTGCAGCCACTTTT | 58.231 | 55.556 | 9.47 | 0.00 | 37.47 | 2.27 |
178 | 179 | 1.583477 | GCCTCTGCAGCCACTTTTC | 59.417 | 57.895 | 9.47 | 0.00 | 37.47 | 2.29 |
179 | 180 | 1.871772 | CCTCTGCAGCCACTTTTCG | 59.128 | 57.895 | 9.47 | 0.00 | 0.00 | 3.46 |
180 | 181 | 0.603707 | CCTCTGCAGCCACTTTTCGA | 60.604 | 55.000 | 9.47 | 0.00 | 0.00 | 3.71 |
181 | 182 | 1.446907 | CTCTGCAGCCACTTTTCGAT | 58.553 | 50.000 | 9.47 | 0.00 | 0.00 | 3.59 |
182 | 183 | 2.621338 | CTCTGCAGCCACTTTTCGATA | 58.379 | 47.619 | 9.47 | 0.00 | 0.00 | 2.92 |
183 | 184 | 3.201290 | CTCTGCAGCCACTTTTCGATAT | 58.799 | 45.455 | 9.47 | 0.00 | 0.00 | 1.63 |
184 | 185 | 3.609853 | TCTGCAGCCACTTTTCGATATT | 58.390 | 40.909 | 9.47 | 0.00 | 0.00 | 1.28 |
185 | 186 | 4.009675 | TCTGCAGCCACTTTTCGATATTT | 58.990 | 39.130 | 9.47 | 0.00 | 0.00 | 1.40 |
186 | 187 | 5.182487 | TCTGCAGCCACTTTTCGATATTTA | 58.818 | 37.500 | 9.47 | 0.00 | 0.00 | 1.40 |
187 | 188 | 5.645929 | TCTGCAGCCACTTTTCGATATTTAA | 59.354 | 36.000 | 9.47 | 0.00 | 0.00 | 1.52 |
188 | 189 | 6.150307 | TCTGCAGCCACTTTTCGATATTTAAA | 59.850 | 34.615 | 9.47 | 0.00 | 0.00 | 1.52 |
189 | 190 | 6.090129 | TGCAGCCACTTTTCGATATTTAAAC | 58.910 | 36.000 | 0.00 | 0.00 | 0.00 | 2.01 |
190 | 191 | 6.090129 | GCAGCCACTTTTCGATATTTAAACA | 58.910 | 36.000 | 0.00 | 0.00 | 0.00 | 2.83 |
191 | 192 | 6.751888 | GCAGCCACTTTTCGATATTTAAACAT | 59.248 | 34.615 | 0.00 | 0.00 | 0.00 | 2.71 |
192 | 193 | 7.275560 | GCAGCCACTTTTCGATATTTAAACATT | 59.724 | 33.333 | 0.00 | 0.00 | 0.00 | 2.71 |
193 | 194 | 9.139174 | CAGCCACTTTTCGATATTTAAACATTT | 57.861 | 29.630 | 0.00 | 0.00 | 0.00 | 2.32 |
194 | 195 | 9.705290 | AGCCACTTTTCGATATTTAAACATTTT | 57.295 | 25.926 | 0.00 | 0.00 | 0.00 | 1.82 |
195 | 196 | 9.739786 | GCCACTTTTCGATATTTAAACATTTTG | 57.260 | 29.630 | 0.00 | 0.00 | 0.00 | 2.44 |
210 | 211 | 9.760660 | TTAAACATTTTGAAATTCGTGTTTTGG | 57.239 | 25.926 | 17.08 | 0.00 | 29.40 | 3.28 |
211 | 212 | 7.602517 | AACATTTTGAAATTCGTGTTTTGGA | 57.397 | 28.000 | 0.00 | 0.00 | 0.00 | 3.53 |
212 | 213 | 7.602517 | ACATTTTGAAATTCGTGTTTTGGAA | 57.397 | 28.000 | 0.00 | 0.00 | 0.00 | 3.53 |
213 | 214 | 7.683746 | ACATTTTGAAATTCGTGTTTTGGAAG | 58.316 | 30.769 | 0.00 | 0.00 | 0.00 | 3.46 |
214 | 215 | 7.333174 | ACATTTTGAAATTCGTGTTTTGGAAGT | 59.667 | 29.630 | 0.00 | 0.00 | 0.00 | 3.01 |
215 | 216 | 7.659652 | TTTTGAAATTCGTGTTTTGGAAGTT | 57.340 | 28.000 | 0.00 | 0.00 | 33.68 | 2.66 |
216 | 217 | 7.659652 | TTTGAAATTCGTGTTTTGGAAGTTT | 57.340 | 28.000 | 0.00 | 0.00 | 31.45 | 2.66 |
217 | 218 | 6.879188 | TGAAATTCGTGTTTTGGAAGTTTC | 57.121 | 33.333 | 0.00 | 0.00 | 31.45 | 2.78 |
218 | 219 | 6.390721 | TGAAATTCGTGTTTTGGAAGTTTCA | 58.609 | 32.000 | 0.00 | 0.00 | 31.45 | 2.69 |
219 | 220 | 6.868864 | TGAAATTCGTGTTTTGGAAGTTTCAA | 59.131 | 30.769 | 0.00 | 0.00 | 32.86 | 2.69 |
220 | 221 | 7.385205 | TGAAATTCGTGTTTTGGAAGTTTCAAA | 59.615 | 29.630 | 5.15 | 5.15 | 32.86 | 2.69 |
221 | 222 | 7.659652 | AATTCGTGTTTTGGAAGTTTCAAAA | 57.340 | 28.000 | 16.59 | 16.59 | 40.46 | 2.44 |
222 | 223 | 7.659652 | ATTCGTGTTTTGGAAGTTTCAAAAA | 57.340 | 28.000 | 21.10 | 8.12 | 43.08 | 1.94 |
258 | 259 | 8.918202 | TTTTCAGGGGATACATATACACATTC | 57.082 | 34.615 | 0.00 | 0.00 | 39.74 | 2.67 |
259 | 260 | 6.620877 | TCAGGGGATACATATACACATTCC | 57.379 | 41.667 | 0.00 | 0.00 | 39.74 | 3.01 |
260 | 261 | 5.186992 | TCAGGGGATACATATACACATTCCG | 59.813 | 44.000 | 0.00 | 0.00 | 39.74 | 4.30 |
261 | 262 | 5.186992 | CAGGGGATACATATACACATTCCGA | 59.813 | 44.000 | 0.00 | 0.00 | 39.74 | 4.55 |
262 | 263 | 5.783360 | AGGGGATACATATACACATTCCGAA | 59.217 | 40.000 | 0.00 | 0.00 | 39.74 | 4.30 |
263 | 264 | 6.443849 | AGGGGATACATATACACATTCCGAAT | 59.556 | 38.462 | 0.00 | 0.00 | 39.74 | 3.34 |
264 | 265 | 7.622081 | AGGGGATACATATACACATTCCGAATA | 59.378 | 37.037 | 0.00 | 0.00 | 39.74 | 1.75 |
265 | 266 | 7.709613 | GGGGATACATATACACATTCCGAATAC | 59.290 | 40.741 | 0.00 | 0.00 | 39.74 | 1.89 |
266 | 267 | 7.709613 | GGGATACATATACACATTCCGAATACC | 59.290 | 40.741 | 0.00 | 0.00 | 39.74 | 2.73 |
267 | 268 | 7.709613 | GGATACATATACACATTCCGAATACCC | 59.290 | 40.741 | 0.00 | 0.00 | 0.00 | 3.69 |
268 | 269 | 5.475719 | ACATATACACATTCCGAATACCCG | 58.524 | 41.667 | 0.00 | 0.00 | 0.00 | 5.28 |
269 | 270 | 5.011329 | ACATATACACATTCCGAATACCCGT | 59.989 | 40.000 | 0.00 | 0.00 | 0.00 | 5.28 |
270 | 271 | 2.018542 | ACACATTCCGAATACCCGTG | 57.981 | 50.000 | 7.45 | 7.45 | 0.00 | 4.94 |
271 | 272 | 1.295792 | CACATTCCGAATACCCGTGG | 58.704 | 55.000 | 0.00 | 0.00 | 0.00 | 4.94 |
272 | 273 | 0.463116 | ACATTCCGAATACCCGTGGC | 60.463 | 55.000 | 0.00 | 0.00 | 0.00 | 5.01 |
273 | 274 | 0.462937 | CATTCCGAATACCCGTGGCA | 60.463 | 55.000 | 0.00 | 0.00 | 0.00 | 4.92 |
274 | 275 | 0.253610 | ATTCCGAATACCCGTGGCAA | 59.746 | 50.000 | 0.00 | 0.00 | 0.00 | 4.52 |
275 | 276 | 0.391927 | TTCCGAATACCCGTGGCAAG | 60.392 | 55.000 | 0.00 | 0.00 | 0.00 | 4.01 |
276 | 277 | 1.078708 | CCGAATACCCGTGGCAAGT | 60.079 | 57.895 | 0.00 | 0.00 | 0.00 | 3.16 |
277 | 278 | 0.675522 | CCGAATACCCGTGGCAAGTT | 60.676 | 55.000 | 0.00 | 0.00 | 0.00 | 2.66 |
278 | 279 | 1.161843 | CGAATACCCGTGGCAAGTTT | 58.838 | 50.000 | 0.00 | 0.00 | 0.00 | 2.66 |
279 | 280 | 1.538075 | CGAATACCCGTGGCAAGTTTT | 59.462 | 47.619 | 0.00 | 0.00 | 0.00 | 2.43 |
280 | 281 | 2.667171 | CGAATACCCGTGGCAAGTTTTG | 60.667 | 50.000 | 0.00 | 0.00 | 0.00 | 2.44 |
281 | 282 | 1.253100 | ATACCCGTGGCAAGTTTTGG | 58.747 | 50.000 | 0.00 | 0.00 | 0.00 | 3.28 |
282 | 283 | 0.106619 | TACCCGTGGCAAGTTTTGGT | 60.107 | 50.000 | 0.00 | 2.20 | 0.00 | 3.67 |
283 | 284 | 0.106619 | ACCCGTGGCAAGTTTTGGTA | 60.107 | 50.000 | 0.00 | 0.00 | 0.00 | 3.25 |
284 | 285 | 0.596082 | CCCGTGGCAAGTTTTGGTAG | 59.404 | 55.000 | 0.00 | 0.00 | 0.00 | 3.18 |
285 | 286 | 1.600023 | CCGTGGCAAGTTTTGGTAGA | 58.400 | 50.000 | 0.00 | 0.00 | 0.00 | 2.59 |
286 | 287 | 1.950909 | CCGTGGCAAGTTTTGGTAGAA | 59.049 | 47.619 | 0.00 | 0.00 | 0.00 | 2.10 |
287 | 288 | 2.359531 | CCGTGGCAAGTTTTGGTAGAAA | 59.640 | 45.455 | 0.00 | 0.00 | 0.00 | 2.52 |
288 | 289 | 3.005367 | CCGTGGCAAGTTTTGGTAGAAAT | 59.995 | 43.478 | 0.00 | 0.00 | 0.00 | 2.17 |
289 | 290 | 4.226761 | CGTGGCAAGTTTTGGTAGAAATC | 58.773 | 43.478 | 0.00 | 0.00 | 0.00 | 2.17 |
290 | 291 | 4.023193 | CGTGGCAAGTTTTGGTAGAAATCT | 60.023 | 41.667 | 0.00 | 0.00 | 0.00 | 2.40 |
291 | 292 | 5.461526 | GTGGCAAGTTTTGGTAGAAATCTC | 58.538 | 41.667 | 0.00 | 0.00 | 0.00 | 2.75 |
292 | 293 | 4.215399 | TGGCAAGTTTTGGTAGAAATCTCG | 59.785 | 41.667 | 0.00 | 0.00 | 0.00 | 4.04 |
293 | 294 | 4.159120 | GCAAGTTTTGGTAGAAATCTCGC | 58.841 | 43.478 | 0.00 | 0.00 | 0.00 | 5.03 |
294 | 295 | 4.083271 | GCAAGTTTTGGTAGAAATCTCGCT | 60.083 | 41.667 | 0.00 | 0.00 | 0.00 | 4.93 |
295 | 296 | 5.562890 | GCAAGTTTTGGTAGAAATCTCGCTT | 60.563 | 40.000 | 0.00 | 0.00 | 0.00 | 4.68 |
296 | 297 | 6.438763 | CAAGTTTTGGTAGAAATCTCGCTTT | 58.561 | 36.000 | 0.00 | 0.00 | 0.00 | 3.51 |
297 | 298 | 6.002062 | AGTTTTGGTAGAAATCTCGCTTTG | 57.998 | 37.500 | 0.00 | 0.00 | 0.00 | 2.77 |
298 | 299 | 5.531287 | AGTTTTGGTAGAAATCTCGCTTTGT | 59.469 | 36.000 | 0.00 | 0.00 | 0.00 | 2.83 |
299 | 300 | 6.039382 | AGTTTTGGTAGAAATCTCGCTTTGTT | 59.961 | 34.615 | 0.00 | 0.00 | 0.00 | 2.83 |
300 | 301 | 6.385649 | TTTGGTAGAAATCTCGCTTTGTTT | 57.614 | 33.333 | 0.00 | 0.00 | 0.00 | 2.83 |
301 | 302 | 6.385649 | TTGGTAGAAATCTCGCTTTGTTTT | 57.614 | 33.333 | 0.00 | 0.00 | 0.00 | 2.43 |
302 | 303 | 5.757886 | TGGTAGAAATCTCGCTTTGTTTTG | 58.242 | 37.500 | 0.00 | 0.00 | 0.00 | 2.44 |
303 | 304 | 5.154222 | GGTAGAAATCTCGCTTTGTTTTGG | 58.846 | 41.667 | 0.00 | 0.00 | 0.00 | 3.28 |
304 | 305 | 4.243007 | AGAAATCTCGCTTTGTTTTGGG | 57.757 | 40.909 | 0.00 | 0.00 | 0.00 | 4.12 |
305 | 306 | 2.438868 | AATCTCGCTTTGTTTTGGGC | 57.561 | 45.000 | 0.00 | 0.00 | 0.00 | 5.36 |
306 | 307 | 1.620822 | ATCTCGCTTTGTTTTGGGCT | 58.379 | 45.000 | 0.00 | 0.00 | 0.00 | 5.19 |
307 | 308 | 2.264005 | TCTCGCTTTGTTTTGGGCTA | 57.736 | 45.000 | 0.00 | 0.00 | 0.00 | 3.93 |
308 | 309 | 2.790433 | TCTCGCTTTGTTTTGGGCTAT | 58.210 | 42.857 | 0.00 | 0.00 | 0.00 | 2.97 |
309 | 310 | 3.945346 | TCTCGCTTTGTTTTGGGCTATA | 58.055 | 40.909 | 0.00 | 0.00 | 0.00 | 1.31 |
310 | 311 | 3.938963 | TCTCGCTTTGTTTTGGGCTATAG | 59.061 | 43.478 | 0.00 | 0.00 | 0.00 | 1.31 |
311 | 312 | 3.938963 | CTCGCTTTGTTTTGGGCTATAGA | 59.061 | 43.478 | 3.21 | 0.00 | 0.00 | 1.98 |
312 | 313 | 4.328536 | TCGCTTTGTTTTGGGCTATAGAA | 58.671 | 39.130 | 3.21 | 0.00 | 0.00 | 2.10 |
313 | 314 | 4.762765 | TCGCTTTGTTTTGGGCTATAGAAA | 59.237 | 37.500 | 3.21 | 0.00 | 0.00 | 2.52 |
314 | 315 | 5.241949 | TCGCTTTGTTTTGGGCTATAGAAAA | 59.758 | 36.000 | 3.21 | 0.00 | 0.00 | 2.29 |
315 | 316 | 5.923684 | CGCTTTGTTTTGGGCTATAGAAAAA | 59.076 | 36.000 | 3.21 | 4.36 | 0.00 | 1.94 |
353 | 354 | 9.066892 | TGACAATATATAAGAGAAAATGGGTGC | 57.933 | 33.333 | 0.00 | 0.00 | 0.00 | 5.01 |
354 | 355 | 8.409358 | ACAATATATAAGAGAAAATGGGTGCC | 57.591 | 34.615 | 0.00 | 0.00 | 0.00 | 5.01 |
355 | 356 | 8.004215 | ACAATATATAAGAGAAAATGGGTGCCA | 58.996 | 33.333 | 0.00 | 0.00 | 38.19 | 4.92 |
366 | 367 | 2.079170 | TGGGTGCCATTTTTGTCAGA | 57.921 | 45.000 | 0.00 | 0.00 | 0.00 | 3.27 |
367 | 368 | 2.392662 | TGGGTGCCATTTTTGTCAGAA | 58.607 | 42.857 | 0.00 | 0.00 | 0.00 | 3.02 |
368 | 369 | 2.768527 | TGGGTGCCATTTTTGTCAGAAA | 59.231 | 40.909 | 0.00 | 0.00 | 0.00 | 2.52 |
369 | 370 | 3.390639 | TGGGTGCCATTTTTGTCAGAAAT | 59.609 | 39.130 | 0.00 | 0.00 | 0.00 | 2.17 |
370 | 371 | 4.141528 | TGGGTGCCATTTTTGTCAGAAATT | 60.142 | 37.500 | 0.00 | 0.00 | 0.00 | 1.82 |
371 | 372 | 4.821260 | GGGTGCCATTTTTGTCAGAAATTT | 59.179 | 37.500 | 0.00 | 0.00 | 0.00 | 1.82 |
372 | 373 | 5.049474 | GGGTGCCATTTTTGTCAGAAATTTC | 60.049 | 40.000 | 10.33 | 10.33 | 0.00 | 2.17 |
373 | 374 | 5.759763 | GGTGCCATTTTTGTCAGAAATTTCT | 59.240 | 36.000 | 15.11 | 15.11 | 38.25 | 2.52 |
374 | 375 | 6.073602 | GGTGCCATTTTTGTCAGAAATTTCTC | 60.074 | 38.462 | 17.91 | 8.67 | 34.74 | 2.87 |
375 | 376 | 6.703165 | GTGCCATTTTTGTCAGAAATTTCTCT | 59.297 | 34.615 | 17.91 | 0.00 | 34.74 | 3.10 |
376 | 377 | 7.225341 | GTGCCATTTTTGTCAGAAATTTCTCTT | 59.775 | 33.333 | 17.91 | 0.00 | 34.74 | 2.85 |
377 | 378 | 7.769970 | TGCCATTTTTGTCAGAAATTTCTCTTT | 59.230 | 29.630 | 17.91 | 0.00 | 34.74 | 2.52 |
378 | 379 | 8.615211 | GCCATTTTTGTCAGAAATTTCTCTTTT | 58.385 | 29.630 | 17.91 | 0.00 | 34.74 | 2.27 |
425 | 426 | 9.908152 | AGTATTTCTTTTTCAGATTTTTACCGG | 57.092 | 29.630 | 0.00 | 0.00 | 0.00 | 5.28 |
426 | 427 | 9.135843 | GTATTTCTTTTTCAGATTTTTACCGGG | 57.864 | 33.333 | 6.32 | 0.00 | 0.00 | 5.73 |
427 | 428 | 5.128992 | TCTTTTTCAGATTTTTACCGGGC | 57.871 | 39.130 | 6.32 | 0.00 | 0.00 | 6.13 |
428 | 429 | 3.945981 | TTTTCAGATTTTTACCGGGCC | 57.054 | 42.857 | 6.32 | 0.00 | 0.00 | 5.80 |
429 | 430 | 2.891191 | TTCAGATTTTTACCGGGCCT | 57.109 | 45.000 | 6.32 | 0.00 | 0.00 | 5.19 |
430 | 431 | 2.891191 | TCAGATTTTTACCGGGCCTT | 57.109 | 45.000 | 6.32 | 0.00 | 0.00 | 4.35 |
431 | 432 | 2.442413 | TCAGATTTTTACCGGGCCTTG | 58.558 | 47.619 | 6.32 | 0.00 | 0.00 | 3.61 |
432 | 433 | 1.476488 | CAGATTTTTACCGGGCCTTGG | 59.524 | 52.381 | 6.32 | 12.37 | 0.00 | 3.61 |
433 | 434 | 0.821517 | GATTTTTACCGGGCCTTGGG | 59.178 | 55.000 | 17.30 | 12.06 | 0.00 | 4.12 |
434 | 435 | 0.410270 | ATTTTTACCGGGCCTTGGGA | 59.590 | 50.000 | 17.30 | 7.42 | 0.00 | 4.37 |
435 | 436 | 0.187851 | TTTTTACCGGGCCTTGGGAA | 59.812 | 50.000 | 17.30 | 12.93 | 0.00 | 3.97 |
436 | 437 | 0.410270 | TTTTACCGGGCCTTGGGAAT | 59.590 | 50.000 | 17.30 | 1.31 | 0.00 | 3.01 |
437 | 438 | 0.323908 | TTTACCGGGCCTTGGGAATG | 60.324 | 55.000 | 17.30 | 0.00 | 0.00 | 2.67 |
438 | 439 | 1.502527 | TTACCGGGCCTTGGGAATGT | 61.503 | 55.000 | 17.30 | 0.66 | 0.00 | 2.71 |
439 | 440 | 2.204865 | TACCGGGCCTTGGGAATGTG | 62.205 | 60.000 | 17.30 | 0.00 | 0.00 | 3.21 |
440 | 441 | 2.035626 | CGGGCCTTGGGAATGTGT | 59.964 | 61.111 | 0.84 | 0.00 | 0.00 | 3.72 |
441 | 442 | 2.046285 | CGGGCCTTGGGAATGTGTC | 61.046 | 63.158 | 0.84 | 0.00 | 0.00 | 3.67 |
442 | 443 | 1.384191 | GGGCCTTGGGAATGTGTCT | 59.616 | 57.895 | 0.84 | 0.00 | 0.00 | 3.41 |
443 | 444 | 0.623723 | GGGCCTTGGGAATGTGTCTA | 59.376 | 55.000 | 0.84 | 0.00 | 0.00 | 2.59 |
444 | 445 | 1.215423 | GGGCCTTGGGAATGTGTCTAT | 59.785 | 52.381 | 0.84 | 0.00 | 0.00 | 1.98 |
445 | 446 | 2.301346 | GGCCTTGGGAATGTGTCTATG | 58.699 | 52.381 | 0.00 | 0.00 | 0.00 | 2.23 |
446 | 447 | 1.678101 | GCCTTGGGAATGTGTCTATGC | 59.322 | 52.381 | 0.00 | 0.00 | 0.00 | 3.14 |
447 | 448 | 2.945440 | GCCTTGGGAATGTGTCTATGCA | 60.945 | 50.000 | 0.00 | 0.00 | 0.00 | 3.96 |
448 | 449 | 3.559069 | CCTTGGGAATGTGTCTATGCAT | 58.441 | 45.455 | 3.79 | 3.79 | 0.00 | 3.96 |
449 | 450 | 3.956199 | CCTTGGGAATGTGTCTATGCATT | 59.044 | 43.478 | 3.54 | 0.00 | 37.94 | 3.56 |
450 | 451 | 4.037208 | CCTTGGGAATGTGTCTATGCATTC | 59.963 | 45.833 | 3.54 | 8.30 | 45.97 | 2.67 |
459 | 460 | 9.177304 | GAATGTGTCTATGCATTCACATATTTG | 57.823 | 33.333 | 28.09 | 0.80 | 46.33 | 2.32 |
460 | 461 | 7.862512 | TGTGTCTATGCATTCACATATTTGA | 57.137 | 32.000 | 20.22 | 0.00 | 36.17 | 2.69 |
461 | 462 | 8.454570 | TGTGTCTATGCATTCACATATTTGAT | 57.545 | 30.769 | 20.22 | 0.00 | 36.17 | 2.57 |
462 | 463 | 8.905850 | TGTGTCTATGCATTCACATATTTGATT | 58.094 | 29.630 | 20.22 | 0.00 | 36.17 | 2.57 |
463 | 464 | 9.740239 | GTGTCTATGCATTCACATATTTGATTT | 57.260 | 29.630 | 3.54 | 0.00 | 32.26 | 2.17 |
554 | 555 | 4.705337 | TTTTTAGCAACCGAAGTGTGTT | 57.295 | 36.364 | 0.00 | 0.00 | 0.00 | 3.32 |
555 | 556 | 4.705337 | TTTTAGCAACCGAAGTGTGTTT | 57.295 | 36.364 | 0.00 | 0.00 | 0.00 | 2.83 |
556 | 557 | 4.705337 | TTTAGCAACCGAAGTGTGTTTT | 57.295 | 36.364 | 0.00 | 0.00 | 0.00 | 2.43 |
557 | 558 | 4.705337 | TTAGCAACCGAAGTGTGTTTTT | 57.295 | 36.364 | 0.00 | 0.00 | 0.00 | 1.94 |
584 | 585 | 8.782339 | AAAAATTTCAAATATCAAGAGCCCTG | 57.218 | 30.769 | 0.00 | 0.00 | 0.00 | 4.45 |
585 | 586 | 6.475596 | AATTTCAAATATCAAGAGCCCTGG | 57.524 | 37.500 | 0.00 | 0.00 | 0.00 | 4.45 |
586 | 587 | 4.860802 | TTCAAATATCAAGAGCCCTGGA | 57.139 | 40.909 | 0.00 | 0.00 | 0.00 | 3.86 |
587 | 588 | 4.428294 | TCAAATATCAAGAGCCCTGGAG | 57.572 | 45.455 | 0.00 | 0.00 | 0.00 | 3.86 |
588 | 589 | 2.883386 | CAAATATCAAGAGCCCTGGAGC | 59.117 | 50.000 | 0.00 | 0.00 | 0.00 | 4.70 |
589 | 590 | 1.063183 | ATATCAAGAGCCCTGGAGCC | 58.937 | 55.000 | 0.00 | 0.00 | 0.00 | 4.70 |
590 | 591 | 1.056700 | TATCAAGAGCCCTGGAGCCC | 61.057 | 60.000 | 0.00 | 0.00 | 0.00 | 5.19 |
591 | 592 | 4.479993 | CAAGAGCCCTGGAGCCCG | 62.480 | 72.222 | 0.00 | 0.00 | 0.00 | 6.13 |
598 | 599 | 3.854669 | CCTGGAGCCCGGTAGCTG | 61.855 | 72.222 | 10.17 | 0.00 | 45.15 | 4.24 |
602 | 603 | 2.512515 | GAGCCCGGTAGCTGCAAG | 60.513 | 66.667 | 10.17 | 0.00 | 45.15 | 4.01 |
614 | 615 | 3.083213 | CTGCAAGCACTTTTCGAGC | 57.917 | 52.632 | 0.00 | 0.00 | 0.00 | 5.03 |
615 | 616 | 0.590195 | CTGCAAGCACTTTTCGAGCT | 59.410 | 50.000 | 0.00 | 0.00 | 41.53 | 4.09 |
618 | 619 | 3.853623 | AAGCACTTTTCGAGCTTGC | 57.146 | 47.368 | 7.93 | 5.35 | 45.82 | 4.01 |
619 | 620 | 0.312102 | AAGCACTTTTCGAGCTTGCC | 59.688 | 50.000 | 7.93 | 0.00 | 45.82 | 4.52 |
620 | 621 | 0.819259 | AGCACTTTTCGAGCTTGCCA | 60.819 | 50.000 | 0.00 | 0.00 | 36.02 | 4.92 |
621 | 622 | 0.030638 | GCACTTTTCGAGCTTGCCAA | 59.969 | 50.000 | 0.00 | 0.00 | 0.00 | 4.52 |
622 | 623 | 1.927710 | GCACTTTTCGAGCTTGCCAAG | 60.928 | 52.381 | 0.00 | 0.00 | 0.00 | 3.61 |
662 | 663 | 3.953612 | CTCTCTCTCTCATAAGTGCCACT | 59.046 | 47.826 | 0.00 | 0.00 | 0.00 | 4.00 |
663 | 664 | 3.951037 | TCTCTCTCTCATAAGTGCCACTC | 59.049 | 47.826 | 0.00 | 0.00 | 0.00 | 3.51 |
664 | 665 | 3.027412 | TCTCTCTCATAAGTGCCACTCC | 58.973 | 50.000 | 0.00 | 0.00 | 0.00 | 3.85 |
665 | 666 | 2.762887 | CTCTCTCATAAGTGCCACTCCA | 59.237 | 50.000 | 0.00 | 0.00 | 0.00 | 3.86 |
666 | 667 | 2.497675 | TCTCTCATAAGTGCCACTCCAC | 59.502 | 50.000 | 0.00 | 0.00 | 35.98 | 4.02 |
673 | 674 | 2.034879 | GTGCCACTCCACCATGTCG | 61.035 | 63.158 | 0.00 | 0.00 | 0.00 | 4.35 |
681 | 682 | 2.436646 | CACCATGTCGCTGTCCCC | 60.437 | 66.667 | 0.00 | 0.00 | 0.00 | 4.81 |
693 | 694 | 1.814248 | GCTGTCCCCTTGTCGTTTTCT | 60.814 | 52.381 | 0.00 | 0.00 | 0.00 | 2.52 |
826 | 829 | 0.321122 | CCAACAGTGTCCTGAGCTCC | 60.321 | 60.000 | 12.15 | 0.00 | 41.50 | 4.70 |
961 | 964 | 4.819630 | GGTTAGTCCATGAAAAGACACACA | 59.180 | 41.667 | 0.00 | 0.00 | 35.38 | 3.72 |
979 | 982 | 1.959226 | ACGCACTTACCTTGCACCG | 60.959 | 57.895 | 0.00 | 0.00 | 40.20 | 4.94 |
998 | 1001 | 1.302033 | CAGCAGCGTATCCCCATCC | 60.302 | 63.158 | 0.00 | 0.00 | 0.00 | 3.51 |
1003 | 1006 | 1.229400 | GCGTATCCCCATCCCCCTA | 60.229 | 63.158 | 0.00 | 0.00 | 0.00 | 3.53 |
1015 | 1018 | 0.780637 | TCCCCCTACCAAATTGTGCA | 59.219 | 50.000 | 0.00 | 0.00 | 0.00 | 4.57 |
1185 | 1223 | 9.694137 | CAAAGACTAGGCTGGTAATAGTATAAC | 57.306 | 37.037 | 2.53 | 0.00 | 30.04 | 1.89 |
1356 | 1394 | 2.858974 | ACCACCACCTCCCCCTTG | 60.859 | 66.667 | 0.00 | 0.00 | 0.00 | 3.61 |
1618 | 1662 | 1.300465 | CATGAGGATCTCGCCACCG | 60.300 | 63.158 | 0.00 | 0.00 | 34.92 | 4.94 |
1653 | 1697 | 1.064946 | CGGCTCCTCGTCATCAGAC | 59.935 | 63.158 | 0.00 | 0.00 | 41.46 | 3.51 |
2065 | 2109 | 7.042950 | TCTATGCATTTCCATTGGTTCATTTG | 58.957 | 34.615 | 3.54 | 0.00 | 0.00 | 2.32 |
2110 | 2154 | 9.878599 | ACTGAAAGAACAATTAAATACTTCACG | 57.121 | 29.630 | 0.00 | 0.00 | 37.43 | 4.35 |
2229 | 2528 | 8.879227 | TGTTTCTCCCCTTTCAAATTAAATCAT | 58.121 | 29.630 | 0.00 | 0.00 | 0.00 | 2.45 |
2685 | 3015 | 6.162079 | TGTTTTGCTGTCAACTCAAATTTCA | 58.838 | 32.000 | 0.00 | 0.00 | 30.89 | 2.69 |
2703 | 3033 | 8.887717 | CAAATTTCACCAAGTTTTCCACATTTA | 58.112 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
2778 | 3108 | 1.200020 | CTTCCTTGTGGATTTGGACGC | 59.800 | 52.381 | 0.00 | 0.00 | 42.81 | 5.19 |
2819 | 3150 | 4.142359 | TGGTGTTTGTTGCGTTTACTCATT | 60.142 | 37.500 | 0.00 | 0.00 | 0.00 | 2.57 |
2870 | 3201 | 3.951663 | AGGAAAGGGATGTTAAGGAACG | 58.048 | 45.455 | 0.00 | 0.00 | 38.51 | 3.95 |
2877 | 3208 | 3.259902 | GGATGTTAAGGAACGTGAGGAC | 58.740 | 50.000 | 0.00 | 0.00 | 38.51 | 3.85 |
2962 | 3293 | 0.179137 | CGGAGAGTAGCACGCAATGA | 60.179 | 55.000 | 0.00 | 0.00 | 0.00 | 2.57 |
3018 | 3349 | 2.425592 | CGAGGGTGGAACTGCACA | 59.574 | 61.111 | 3.68 | 0.00 | 36.74 | 4.57 |
3442 | 3773 | 2.058595 | TCCGGTTAGAGAGCCAGCC | 61.059 | 63.158 | 0.00 | 0.00 | 0.00 | 4.85 |
3490 | 3821 | 2.100749 | TGTGACATAGGGCGTGAGTATG | 59.899 | 50.000 | 0.00 | 0.00 | 0.00 | 2.39 |
3493 | 3824 | 3.449377 | TGACATAGGGCGTGAGTATGAAA | 59.551 | 43.478 | 0.00 | 0.00 | 0.00 | 2.69 |
3568 | 3903 | 7.169158 | TCAACCAGGGAAATCATTTATCAAC | 57.831 | 36.000 | 0.00 | 0.00 | 0.00 | 3.18 |
3610 | 3945 | 9.787532 | CGTTGTGATCCAAATTCAAGTATAAAT | 57.212 | 29.630 | 0.00 | 0.00 | 34.07 | 1.40 |
3635 | 3970 | 0.109272 | TGCTAACTTCTGACGAGCGG | 60.109 | 55.000 | 0.00 | 0.00 | 35.88 | 5.52 |
3763 | 4098 | 6.434340 | GGAAAAGTTGATCAGTTGTAATCCCT | 59.566 | 38.462 | 0.00 | 0.00 | 0.00 | 4.20 |
3765 | 4100 | 5.762179 | AGTTGATCAGTTGTAATCCCTGA | 57.238 | 39.130 | 0.00 | 0.00 | 39.38 | 3.86 |
3767 | 4102 | 4.123497 | TGATCAGTTGTAATCCCTGACG | 57.877 | 45.455 | 0.00 | 0.00 | 38.00 | 4.35 |
3780 | 4115 | 1.346722 | CCCTGACGTTTGTAACCTCCT | 59.653 | 52.381 | 0.00 | 0.00 | 0.00 | 3.69 |
3794 | 4147 | 2.203640 | TCCTCCGATATGGCGCCT | 60.204 | 61.111 | 29.70 | 15.76 | 37.80 | 5.52 |
3798 | 4151 | 2.087462 | CTCCGATATGGCGCCTGTGA | 62.087 | 60.000 | 29.70 | 7.47 | 37.80 | 3.58 |
3802 | 4155 | 1.195448 | CGATATGGCGCCTGTGATTTC | 59.805 | 52.381 | 29.70 | 15.43 | 0.00 | 2.17 |
3843 | 4197 | 4.690280 | GGGTTTTCCACGTAAAATCTCGTA | 59.310 | 41.667 | 6.73 | 0.00 | 42.91 | 3.43 |
3847 | 4201 | 5.587388 | TTCCACGTAAAATCTCGTATCCT | 57.413 | 39.130 | 0.00 | 0.00 | 38.52 | 3.24 |
3861 | 4215 | 5.084818 | TCGTATCCTCTGATTGCTTTTCA | 57.915 | 39.130 | 0.00 | 0.00 | 32.18 | 2.69 |
3871 | 4225 | 3.255395 | TGATTGCTTTTCATTCTTCGCCA | 59.745 | 39.130 | 0.00 | 0.00 | 0.00 | 5.69 |
3888 | 4242 | 1.273048 | GCCATGTTGATTTGCCTGTCA | 59.727 | 47.619 | 0.00 | 0.00 | 0.00 | 3.58 |
4033 | 4464 | 1.427819 | CGGCGTCCCAAATAGTTGC | 59.572 | 57.895 | 0.00 | 0.00 | 33.01 | 4.17 |
4044 | 4475 | 8.188139 | CGTCCCAAATAGTTGCTGTATAAATTT | 58.812 | 33.333 | 0.00 | 0.00 | 33.01 | 1.82 |
4091 | 4887 | 8.681486 | TGATTTGGTATTGTCTATCTTCATGG | 57.319 | 34.615 | 0.00 | 0.00 | 0.00 | 3.66 |
4116 | 4912 | 7.367285 | GTTTTGTATATCTGCTTGGTCAAACA | 58.633 | 34.615 | 0.00 | 0.00 | 0.00 | 2.83 |
4180 | 4976 | 8.347771 | TCTTTGACATTCTGTTCTCAAAATCAG | 58.652 | 33.333 | 0.00 | 0.00 | 0.00 | 2.90 |
4287 | 5085 | 7.217200 | GCTCTAACCACAGGATGATAACATTA | 58.783 | 38.462 | 0.00 | 0.00 | 39.69 | 1.90 |
4418 | 5217 | 7.842887 | AAACTGCAGGGGTAATTAACTAAAA | 57.157 | 32.000 | 19.93 | 0.00 | 0.00 | 1.52 |
4523 | 5322 | 5.878332 | TTACTCAATTGTGTGGCTATGTG | 57.122 | 39.130 | 20.54 | 0.00 | 0.00 | 3.21 |
4536 | 5335 | 4.455877 | GTGGCTATGTGTTTCTAGCTGTTT | 59.544 | 41.667 | 0.00 | 0.00 | 40.17 | 2.83 |
4579 | 5378 | 5.170021 | TGCACATTTTTGCCTTAGCTAATG | 58.830 | 37.500 | 6.64 | 5.46 | 42.25 | 1.90 |
4603 | 5402 | 4.617530 | GCTGTGAAATTGTGCATCTGTCAT | 60.618 | 41.667 | 0.00 | 0.00 | 0.00 | 3.06 |
4685 | 5489 | 3.011119 | ACGCACACAAAAGGACAGTTTA | 58.989 | 40.909 | 0.00 | 0.00 | 0.00 | 2.01 |
4727 | 5531 | 8.726988 | GCTGTGTAATTAACTTGATCCACTTAA | 58.273 | 33.333 | 0.00 | 0.00 | 0.00 | 1.85 |
4813 | 5620 | 6.142798 | CGATAGAATATTTTTGGTGCATGCAC | 59.857 | 38.462 | 37.29 | 37.29 | 42.22 | 4.57 |
4866 | 5673 | 3.326578 | TGCCTAGCCCGGAAGCAA | 61.327 | 61.111 | 0.73 | 0.00 | 34.23 | 3.91 |
5085 | 5892 | 1.107114 | ACGTCGAGCAGATCAATCCT | 58.893 | 50.000 | 0.00 | 0.00 | 0.00 | 3.24 |
5234 | 6041 | 7.009179 | TGGAGACTGATAATAATCCCATGAC | 57.991 | 40.000 | 0.00 | 0.00 | 0.00 | 3.06 |
5336 | 6143 | 2.738213 | ATCAATCGATCAGGGCGGCC | 62.738 | 60.000 | 22.67 | 22.67 | 0.00 | 6.13 |
5393 | 6200 | 6.044046 | TCATACATATCTTAAAACGCACGGT | 58.956 | 36.000 | 0.00 | 0.00 | 0.00 | 4.83 |
5400 | 6207 | 3.740513 | AAACGCACGGTTTCTCCC | 58.259 | 55.556 | 0.00 | 0.00 | 45.60 | 4.30 |
5681 | 6490 | 7.959651 | GCAAAATGAGTGAATCTACACACTAAG | 59.040 | 37.037 | 0.00 | 0.00 | 45.54 | 2.18 |
5733 | 6542 | 4.807304 | TGTATCGAATTCGCTAAAAGGTCC | 59.193 | 41.667 | 22.90 | 4.86 | 39.60 | 4.46 |
5766 | 6575 | 8.602472 | AGAATCAGAAGGAGTACTATTCAAGT | 57.398 | 34.615 | 17.95 | 8.40 | 42.62 | 3.16 |
5842 | 6651 | 7.360361 | CCAACTAACACCAAGTCACTTATTTC | 58.640 | 38.462 | 0.00 | 0.00 | 0.00 | 2.17 |
5850 | 6659 | 3.611766 | AGTCACTTATTTCGGGACTGG | 57.388 | 47.619 | 0.00 | 0.00 | 37.43 | 4.00 |
5947 | 6756 | 5.941647 | CCTGTGTGCATATATTCATGATCCA | 59.058 | 40.000 | 0.00 | 0.00 | 0.00 | 3.41 |
5965 | 6774 | 6.003326 | TGATCCAAAGTGAAATGCTTGAGTA | 58.997 | 36.000 | 0.00 | 0.00 | 0.00 | 2.59 |
6297 | 7118 | 2.172679 | TGGTACATCTTAGCACGGTGA | 58.827 | 47.619 | 13.29 | 0.00 | 0.00 | 4.02 |
6441 | 7264 | 3.931907 | ATGTAAGCTAGCCACCATTGA | 57.068 | 42.857 | 12.13 | 0.00 | 0.00 | 2.57 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
100 | 101 | 9.771534 | CCAAAATACCTTTTCCATAACTCAAAA | 57.228 | 29.630 | 0.00 | 0.00 | 32.21 | 2.44 |
101 | 102 | 7.875554 | GCCAAAATACCTTTTCCATAACTCAAA | 59.124 | 33.333 | 0.00 | 0.00 | 32.21 | 2.69 |
102 | 103 | 7.234577 | AGCCAAAATACCTTTTCCATAACTCAA | 59.765 | 33.333 | 0.00 | 0.00 | 32.21 | 3.02 |
103 | 104 | 6.723977 | AGCCAAAATACCTTTTCCATAACTCA | 59.276 | 34.615 | 0.00 | 0.00 | 32.21 | 3.41 |
104 | 105 | 7.035612 | CAGCCAAAATACCTTTTCCATAACTC | 58.964 | 38.462 | 0.00 | 0.00 | 32.21 | 3.01 |
105 | 106 | 6.723977 | TCAGCCAAAATACCTTTTCCATAACT | 59.276 | 34.615 | 0.00 | 0.00 | 32.21 | 2.24 |
106 | 107 | 6.930731 | TCAGCCAAAATACCTTTTCCATAAC | 58.069 | 36.000 | 0.00 | 0.00 | 32.21 | 1.89 |
107 | 108 | 7.732222 | ATCAGCCAAAATACCTTTTCCATAA | 57.268 | 32.000 | 0.00 | 0.00 | 32.21 | 1.90 |
108 | 109 | 8.830915 | TTATCAGCCAAAATACCTTTTCCATA | 57.169 | 30.769 | 0.00 | 0.00 | 32.21 | 2.74 |
109 | 110 | 7.732222 | TTATCAGCCAAAATACCTTTTCCAT | 57.268 | 32.000 | 0.00 | 0.00 | 32.21 | 3.41 |
110 | 111 | 7.546250 | TTTATCAGCCAAAATACCTTTTCCA | 57.454 | 32.000 | 0.00 | 0.00 | 32.21 | 3.53 |
111 | 112 | 8.040727 | ACATTTATCAGCCAAAATACCTTTTCC | 58.959 | 33.333 | 0.00 | 0.00 | 32.21 | 3.13 |
120 | 121 | 8.971073 | GCCCTATATACATTTATCAGCCAAAAT | 58.029 | 33.333 | 0.00 | 0.00 | 0.00 | 1.82 |
121 | 122 | 8.170061 | AGCCCTATATACATTTATCAGCCAAAA | 58.830 | 33.333 | 0.00 | 0.00 | 0.00 | 2.44 |
122 | 123 | 7.698912 | AGCCCTATATACATTTATCAGCCAAA | 58.301 | 34.615 | 0.00 | 0.00 | 0.00 | 3.28 |
123 | 124 | 7.037658 | TGAGCCCTATATACATTTATCAGCCAA | 60.038 | 37.037 | 0.00 | 0.00 | 0.00 | 4.52 |
124 | 125 | 6.443527 | TGAGCCCTATATACATTTATCAGCCA | 59.556 | 38.462 | 0.00 | 0.00 | 0.00 | 4.75 |
125 | 126 | 6.889198 | TGAGCCCTATATACATTTATCAGCC | 58.111 | 40.000 | 0.00 | 0.00 | 0.00 | 4.85 |
126 | 127 | 8.834465 | CATTGAGCCCTATATACATTTATCAGC | 58.166 | 37.037 | 0.00 | 0.00 | 0.00 | 4.26 |
127 | 128 | 9.334947 | CCATTGAGCCCTATATACATTTATCAG | 57.665 | 37.037 | 0.00 | 0.00 | 0.00 | 2.90 |
128 | 129 | 9.056799 | TCCATTGAGCCCTATATACATTTATCA | 57.943 | 33.333 | 0.00 | 0.00 | 0.00 | 2.15 |
129 | 130 | 9.553064 | CTCCATTGAGCCCTATATACATTTATC | 57.447 | 37.037 | 0.00 | 0.00 | 0.00 | 1.75 |
146 | 147 | 1.227497 | GAGGCCGAGCTCCATTGAG | 60.227 | 63.158 | 8.47 | 0.00 | 41.84 | 3.02 |
147 | 148 | 1.687146 | AGAGGCCGAGCTCCATTGA | 60.687 | 57.895 | 8.47 | 0.00 | 0.00 | 2.57 |
148 | 149 | 1.523258 | CAGAGGCCGAGCTCCATTG | 60.523 | 63.158 | 8.47 | 0.00 | 0.00 | 2.82 |
149 | 150 | 2.906458 | CAGAGGCCGAGCTCCATT | 59.094 | 61.111 | 8.47 | 0.00 | 0.00 | 3.16 |
150 | 151 | 3.859414 | GCAGAGGCCGAGCTCCAT | 61.859 | 66.667 | 8.47 | 0.00 | 0.00 | 3.41 |
152 | 153 | 4.527583 | CTGCAGAGGCCGAGCTCC | 62.528 | 72.222 | 8.42 | 0.00 | 40.13 | 4.70 |
160 | 161 | 1.583477 | GAAAAGTGGCTGCAGAGGC | 59.417 | 57.895 | 20.43 | 5.00 | 45.19 | 4.70 |
161 | 162 | 0.603707 | TCGAAAAGTGGCTGCAGAGG | 60.604 | 55.000 | 20.43 | 0.00 | 0.00 | 3.69 |
162 | 163 | 1.446907 | ATCGAAAAGTGGCTGCAGAG | 58.553 | 50.000 | 20.43 | 0.00 | 0.00 | 3.35 |
163 | 164 | 2.760634 | TATCGAAAAGTGGCTGCAGA | 57.239 | 45.000 | 20.43 | 0.00 | 0.00 | 4.26 |
164 | 165 | 4.361451 | AAATATCGAAAAGTGGCTGCAG | 57.639 | 40.909 | 10.11 | 10.11 | 0.00 | 4.41 |
165 | 166 | 5.888691 | TTAAATATCGAAAAGTGGCTGCA | 57.111 | 34.783 | 0.50 | 0.00 | 0.00 | 4.41 |
166 | 167 | 6.090129 | TGTTTAAATATCGAAAAGTGGCTGC | 58.910 | 36.000 | 0.00 | 0.00 | 0.00 | 5.25 |
167 | 168 | 8.687824 | AATGTTTAAATATCGAAAAGTGGCTG | 57.312 | 30.769 | 0.00 | 0.00 | 0.00 | 4.85 |
168 | 169 | 9.705290 | AAAATGTTTAAATATCGAAAAGTGGCT | 57.295 | 25.926 | 0.00 | 0.00 | 0.00 | 4.75 |
169 | 170 | 9.739786 | CAAAATGTTTAAATATCGAAAAGTGGC | 57.260 | 29.630 | 0.00 | 0.00 | 0.00 | 5.01 |
184 | 185 | 9.760660 | CCAAAACACGAATTTCAAAATGTTTAA | 57.239 | 25.926 | 13.78 | 0.00 | 0.00 | 1.52 |
185 | 186 | 9.151471 | TCCAAAACACGAATTTCAAAATGTTTA | 57.849 | 25.926 | 13.78 | 2.80 | 0.00 | 2.01 |
186 | 187 | 8.034058 | TCCAAAACACGAATTTCAAAATGTTT | 57.966 | 26.923 | 10.13 | 10.13 | 0.00 | 2.83 |
187 | 188 | 7.602517 | TCCAAAACACGAATTTCAAAATGTT | 57.397 | 28.000 | 0.00 | 0.00 | 0.00 | 2.71 |
188 | 189 | 7.333174 | ACTTCCAAAACACGAATTTCAAAATGT | 59.667 | 29.630 | 0.00 | 0.00 | 0.00 | 2.71 |
189 | 190 | 7.683746 | ACTTCCAAAACACGAATTTCAAAATG | 58.316 | 30.769 | 0.00 | 0.00 | 0.00 | 2.32 |
190 | 191 | 7.841915 | ACTTCCAAAACACGAATTTCAAAAT | 57.158 | 28.000 | 0.00 | 0.00 | 0.00 | 1.82 |
191 | 192 | 7.659652 | AACTTCCAAAACACGAATTTCAAAA | 57.340 | 28.000 | 0.00 | 0.00 | 0.00 | 2.44 |
192 | 193 | 7.385205 | TGAAACTTCCAAAACACGAATTTCAAA | 59.615 | 29.630 | 0.00 | 0.00 | 30.95 | 2.69 |
193 | 194 | 6.868864 | TGAAACTTCCAAAACACGAATTTCAA | 59.131 | 30.769 | 0.00 | 0.00 | 30.95 | 2.69 |
194 | 195 | 6.390721 | TGAAACTTCCAAAACACGAATTTCA | 58.609 | 32.000 | 0.00 | 0.00 | 31.15 | 2.69 |
195 | 196 | 6.879188 | TGAAACTTCCAAAACACGAATTTC | 57.121 | 33.333 | 0.00 | 0.00 | 0.00 | 2.17 |
196 | 197 | 7.659652 | TTTGAAACTTCCAAAACACGAATTT | 57.340 | 28.000 | 0.00 | 0.00 | 31.36 | 1.82 |
197 | 198 | 7.659652 | TTTTGAAACTTCCAAAACACGAATT | 57.340 | 28.000 | 0.00 | 0.00 | 38.23 | 2.17 |
198 | 199 | 7.659652 | TTTTTGAAACTTCCAAAACACGAAT | 57.340 | 28.000 | 0.00 | 0.00 | 41.48 | 3.34 |
232 | 233 | 9.349713 | GAATGTGTATATGTATCCCCTGAAAAA | 57.650 | 33.333 | 0.00 | 0.00 | 0.00 | 1.94 |
233 | 234 | 7.942341 | GGAATGTGTATATGTATCCCCTGAAAA | 59.058 | 37.037 | 0.00 | 0.00 | 0.00 | 2.29 |
234 | 235 | 7.458397 | GGAATGTGTATATGTATCCCCTGAAA | 58.542 | 38.462 | 0.00 | 0.00 | 0.00 | 2.69 |
235 | 236 | 6.295632 | CGGAATGTGTATATGTATCCCCTGAA | 60.296 | 42.308 | 0.00 | 0.00 | 0.00 | 3.02 |
236 | 237 | 5.186992 | CGGAATGTGTATATGTATCCCCTGA | 59.813 | 44.000 | 0.00 | 0.00 | 0.00 | 3.86 |
237 | 238 | 5.186992 | TCGGAATGTGTATATGTATCCCCTG | 59.813 | 44.000 | 0.00 | 0.00 | 0.00 | 4.45 |
238 | 239 | 5.338632 | TCGGAATGTGTATATGTATCCCCT | 58.661 | 41.667 | 0.00 | 0.00 | 0.00 | 4.79 |
239 | 240 | 5.670792 | TCGGAATGTGTATATGTATCCCC | 57.329 | 43.478 | 0.00 | 0.00 | 0.00 | 4.81 |
240 | 241 | 7.709613 | GGTATTCGGAATGTGTATATGTATCCC | 59.290 | 40.741 | 13.37 | 0.00 | 0.00 | 3.85 |
241 | 242 | 7.709613 | GGGTATTCGGAATGTGTATATGTATCC | 59.290 | 40.741 | 13.37 | 0.00 | 0.00 | 2.59 |
242 | 243 | 7.434307 | CGGGTATTCGGAATGTGTATATGTATC | 59.566 | 40.741 | 13.37 | 0.00 | 0.00 | 2.24 |
243 | 244 | 7.093640 | ACGGGTATTCGGAATGTGTATATGTAT | 60.094 | 37.037 | 13.37 | 0.00 | 0.00 | 2.29 |
244 | 245 | 6.209192 | ACGGGTATTCGGAATGTGTATATGTA | 59.791 | 38.462 | 13.37 | 0.00 | 0.00 | 2.29 |
245 | 246 | 5.011329 | ACGGGTATTCGGAATGTGTATATGT | 59.989 | 40.000 | 13.37 | 0.00 | 0.00 | 2.29 |
246 | 247 | 5.347635 | CACGGGTATTCGGAATGTGTATATG | 59.652 | 44.000 | 13.37 | 0.34 | 0.00 | 1.78 |
247 | 248 | 5.475719 | CACGGGTATTCGGAATGTGTATAT | 58.524 | 41.667 | 13.37 | 0.00 | 0.00 | 0.86 |
248 | 249 | 4.262121 | CCACGGGTATTCGGAATGTGTATA | 60.262 | 45.833 | 13.37 | 0.00 | 0.00 | 1.47 |
249 | 250 | 3.493699 | CCACGGGTATTCGGAATGTGTAT | 60.494 | 47.826 | 13.37 | 0.00 | 0.00 | 2.29 |
250 | 251 | 2.159071 | CCACGGGTATTCGGAATGTGTA | 60.159 | 50.000 | 13.37 | 0.00 | 0.00 | 2.90 |
251 | 252 | 1.406341 | CCACGGGTATTCGGAATGTGT | 60.406 | 52.381 | 13.37 | 3.79 | 0.00 | 3.72 |
252 | 253 | 1.295792 | CCACGGGTATTCGGAATGTG | 58.704 | 55.000 | 13.37 | 11.64 | 0.00 | 3.21 |
253 | 254 | 0.463116 | GCCACGGGTATTCGGAATGT | 60.463 | 55.000 | 13.37 | 0.00 | 0.00 | 2.71 |
254 | 255 | 0.462937 | TGCCACGGGTATTCGGAATG | 60.463 | 55.000 | 13.37 | 0.00 | 0.00 | 2.67 |
255 | 256 | 0.253610 | TTGCCACGGGTATTCGGAAT | 59.746 | 50.000 | 8.49 | 8.49 | 0.00 | 3.01 |
256 | 257 | 0.391927 | CTTGCCACGGGTATTCGGAA | 60.392 | 55.000 | 0.00 | 0.00 | 0.00 | 4.30 |
257 | 258 | 1.219664 | CTTGCCACGGGTATTCGGA | 59.780 | 57.895 | 0.00 | 0.00 | 0.00 | 4.55 |
258 | 259 | 0.675522 | AACTTGCCACGGGTATTCGG | 60.676 | 55.000 | 0.00 | 0.00 | 0.00 | 4.30 |
259 | 260 | 1.161843 | AAACTTGCCACGGGTATTCG | 58.838 | 50.000 | 0.00 | 0.00 | 0.00 | 3.34 |
260 | 261 | 2.352323 | CCAAAACTTGCCACGGGTATTC | 60.352 | 50.000 | 0.00 | 0.00 | 0.00 | 1.75 |
261 | 262 | 1.616374 | CCAAAACTTGCCACGGGTATT | 59.384 | 47.619 | 0.00 | 0.00 | 0.00 | 1.89 |
262 | 263 | 1.253100 | CCAAAACTTGCCACGGGTAT | 58.747 | 50.000 | 0.00 | 0.00 | 0.00 | 2.73 |
263 | 264 | 0.106619 | ACCAAAACTTGCCACGGGTA | 60.107 | 50.000 | 0.00 | 0.00 | 0.00 | 3.69 |
264 | 265 | 0.106619 | TACCAAAACTTGCCACGGGT | 60.107 | 50.000 | 0.00 | 0.00 | 0.00 | 5.28 |
265 | 266 | 0.596082 | CTACCAAAACTTGCCACGGG | 59.404 | 55.000 | 0.00 | 0.00 | 0.00 | 5.28 |
266 | 267 | 1.600023 | TCTACCAAAACTTGCCACGG | 58.400 | 50.000 | 0.00 | 0.00 | 0.00 | 4.94 |
267 | 268 | 3.701532 | TTTCTACCAAAACTTGCCACG | 57.298 | 42.857 | 0.00 | 0.00 | 0.00 | 4.94 |
268 | 269 | 5.453567 | AGATTTCTACCAAAACTTGCCAC | 57.546 | 39.130 | 0.00 | 0.00 | 0.00 | 5.01 |
269 | 270 | 4.215399 | CGAGATTTCTACCAAAACTTGCCA | 59.785 | 41.667 | 0.00 | 0.00 | 0.00 | 4.92 |
270 | 271 | 4.723248 | CGAGATTTCTACCAAAACTTGCC | 58.277 | 43.478 | 0.00 | 0.00 | 0.00 | 4.52 |
271 | 272 | 4.083271 | AGCGAGATTTCTACCAAAACTTGC | 60.083 | 41.667 | 7.99 | 7.99 | 32.60 | 4.01 |
272 | 273 | 5.613358 | AGCGAGATTTCTACCAAAACTTG | 57.387 | 39.130 | 0.00 | 0.00 | 0.00 | 3.16 |
273 | 274 | 6.039382 | ACAAAGCGAGATTTCTACCAAAACTT | 59.961 | 34.615 | 0.00 | 0.00 | 0.00 | 2.66 |
274 | 275 | 5.531287 | ACAAAGCGAGATTTCTACCAAAACT | 59.469 | 36.000 | 0.00 | 0.00 | 0.00 | 2.66 |
275 | 276 | 5.758924 | ACAAAGCGAGATTTCTACCAAAAC | 58.241 | 37.500 | 0.00 | 0.00 | 0.00 | 2.43 |
276 | 277 | 6.385649 | AACAAAGCGAGATTTCTACCAAAA | 57.614 | 33.333 | 0.00 | 0.00 | 0.00 | 2.44 |
277 | 278 | 6.385649 | AAACAAAGCGAGATTTCTACCAAA | 57.614 | 33.333 | 0.00 | 0.00 | 0.00 | 3.28 |
278 | 279 | 6.205784 | CAAAACAAAGCGAGATTTCTACCAA | 58.794 | 36.000 | 0.00 | 0.00 | 0.00 | 3.67 |
279 | 280 | 5.278266 | CCAAAACAAAGCGAGATTTCTACCA | 60.278 | 40.000 | 0.00 | 0.00 | 0.00 | 3.25 |
280 | 281 | 5.154222 | CCAAAACAAAGCGAGATTTCTACC | 58.846 | 41.667 | 0.00 | 0.00 | 0.00 | 3.18 |
281 | 282 | 5.154222 | CCCAAAACAAAGCGAGATTTCTAC | 58.846 | 41.667 | 0.00 | 0.00 | 0.00 | 2.59 |
282 | 283 | 4.320935 | GCCCAAAACAAAGCGAGATTTCTA | 60.321 | 41.667 | 0.00 | 0.00 | 0.00 | 2.10 |
283 | 284 | 3.552890 | GCCCAAAACAAAGCGAGATTTCT | 60.553 | 43.478 | 0.00 | 0.00 | 0.00 | 2.52 |
284 | 285 | 2.731451 | GCCCAAAACAAAGCGAGATTTC | 59.269 | 45.455 | 0.00 | 0.00 | 0.00 | 2.17 |
285 | 286 | 2.365293 | AGCCCAAAACAAAGCGAGATTT | 59.635 | 40.909 | 0.00 | 0.00 | 0.00 | 2.17 |
286 | 287 | 1.963515 | AGCCCAAAACAAAGCGAGATT | 59.036 | 42.857 | 0.00 | 0.00 | 0.00 | 2.40 |
287 | 288 | 1.620822 | AGCCCAAAACAAAGCGAGAT | 58.379 | 45.000 | 0.00 | 0.00 | 0.00 | 2.75 |
288 | 289 | 2.264005 | TAGCCCAAAACAAAGCGAGA | 57.736 | 45.000 | 0.00 | 0.00 | 0.00 | 4.04 |
289 | 290 | 3.938963 | TCTATAGCCCAAAACAAAGCGAG | 59.061 | 43.478 | 0.00 | 0.00 | 0.00 | 5.03 |
290 | 291 | 3.945346 | TCTATAGCCCAAAACAAAGCGA | 58.055 | 40.909 | 0.00 | 0.00 | 0.00 | 4.93 |
291 | 292 | 4.695217 | TTCTATAGCCCAAAACAAAGCG | 57.305 | 40.909 | 0.00 | 0.00 | 0.00 | 4.68 |
327 | 328 | 9.066892 | GCACCCATTTTCTCTTATATATTGTCA | 57.933 | 33.333 | 0.00 | 0.00 | 0.00 | 3.58 |
328 | 329 | 8.515414 | GGCACCCATTTTCTCTTATATATTGTC | 58.485 | 37.037 | 0.00 | 0.00 | 0.00 | 3.18 |
329 | 330 | 8.004215 | TGGCACCCATTTTCTCTTATATATTGT | 58.996 | 33.333 | 0.00 | 0.00 | 0.00 | 2.71 |
330 | 331 | 8.408043 | TGGCACCCATTTTCTCTTATATATTG | 57.592 | 34.615 | 0.00 | 0.00 | 0.00 | 1.90 |
347 | 348 | 2.079170 | TCTGACAAAAATGGCACCCA | 57.921 | 45.000 | 0.00 | 0.00 | 38.19 | 4.51 |
348 | 349 | 3.467374 | TTTCTGACAAAAATGGCACCC | 57.533 | 42.857 | 0.00 | 0.00 | 0.00 | 4.61 |
349 | 350 | 5.759763 | AGAAATTTCTGACAAAAATGGCACC | 59.240 | 36.000 | 19.86 | 0.00 | 35.89 | 5.01 |
350 | 351 | 6.703165 | AGAGAAATTTCTGACAAAAATGGCAC | 59.297 | 34.615 | 25.12 | 5.64 | 37.73 | 5.01 |
351 | 352 | 6.819284 | AGAGAAATTTCTGACAAAAATGGCA | 58.181 | 32.000 | 25.12 | 0.00 | 37.73 | 4.92 |
352 | 353 | 7.719778 | AAGAGAAATTTCTGACAAAAATGGC | 57.280 | 32.000 | 25.12 | 6.25 | 37.73 | 4.40 |
399 | 400 | 9.908152 | CCGGTAAAAATCTGAAAAAGAAATACT | 57.092 | 29.630 | 0.00 | 0.00 | 38.79 | 2.12 |
400 | 401 | 9.135843 | CCCGGTAAAAATCTGAAAAAGAAATAC | 57.864 | 33.333 | 0.00 | 0.00 | 38.79 | 1.89 |
401 | 402 | 7.815549 | GCCCGGTAAAAATCTGAAAAAGAAATA | 59.184 | 33.333 | 0.00 | 0.00 | 38.79 | 1.40 |
402 | 403 | 6.649141 | GCCCGGTAAAAATCTGAAAAAGAAAT | 59.351 | 34.615 | 0.00 | 0.00 | 38.79 | 2.17 |
403 | 404 | 5.986741 | GCCCGGTAAAAATCTGAAAAAGAAA | 59.013 | 36.000 | 0.00 | 0.00 | 38.79 | 2.52 |
404 | 405 | 5.510009 | GGCCCGGTAAAAATCTGAAAAAGAA | 60.510 | 40.000 | 0.00 | 0.00 | 38.79 | 2.52 |
405 | 406 | 4.021807 | GGCCCGGTAAAAATCTGAAAAAGA | 60.022 | 41.667 | 0.00 | 0.00 | 39.94 | 2.52 |
406 | 407 | 4.021456 | AGGCCCGGTAAAAATCTGAAAAAG | 60.021 | 41.667 | 0.00 | 0.00 | 0.00 | 2.27 |
407 | 408 | 3.898741 | AGGCCCGGTAAAAATCTGAAAAA | 59.101 | 39.130 | 0.00 | 0.00 | 0.00 | 1.94 |
408 | 409 | 3.502356 | AGGCCCGGTAAAAATCTGAAAA | 58.498 | 40.909 | 0.00 | 0.00 | 0.00 | 2.29 |
409 | 410 | 3.163616 | AGGCCCGGTAAAAATCTGAAA | 57.836 | 42.857 | 0.00 | 0.00 | 0.00 | 2.69 |
410 | 411 | 2.823154 | CAAGGCCCGGTAAAAATCTGAA | 59.177 | 45.455 | 0.00 | 0.00 | 0.00 | 3.02 |
411 | 412 | 2.442413 | CAAGGCCCGGTAAAAATCTGA | 58.558 | 47.619 | 0.00 | 0.00 | 0.00 | 3.27 |
412 | 413 | 1.476488 | CCAAGGCCCGGTAAAAATCTG | 59.524 | 52.381 | 0.00 | 0.00 | 0.00 | 2.90 |
413 | 414 | 1.618616 | CCCAAGGCCCGGTAAAAATCT | 60.619 | 52.381 | 0.00 | 0.00 | 0.00 | 2.40 |
414 | 415 | 0.821517 | CCCAAGGCCCGGTAAAAATC | 59.178 | 55.000 | 0.00 | 0.00 | 0.00 | 2.17 |
415 | 416 | 0.410270 | TCCCAAGGCCCGGTAAAAAT | 59.590 | 50.000 | 0.00 | 0.00 | 0.00 | 1.82 |
416 | 417 | 0.187851 | TTCCCAAGGCCCGGTAAAAA | 59.812 | 50.000 | 0.00 | 0.00 | 0.00 | 1.94 |
417 | 418 | 0.410270 | ATTCCCAAGGCCCGGTAAAA | 59.590 | 50.000 | 0.00 | 0.00 | 0.00 | 1.52 |
418 | 419 | 0.323908 | CATTCCCAAGGCCCGGTAAA | 60.324 | 55.000 | 0.00 | 0.00 | 0.00 | 2.01 |
419 | 420 | 1.304952 | CATTCCCAAGGCCCGGTAA | 59.695 | 57.895 | 0.00 | 0.00 | 0.00 | 2.85 |
420 | 421 | 1.926489 | ACATTCCCAAGGCCCGGTA | 60.926 | 57.895 | 0.00 | 0.00 | 0.00 | 4.02 |
421 | 422 | 3.264845 | ACATTCCCAAGGCCCGGT | 61.265 | 61.111 | 0.00 | 0.00 | 0.00 | 5.28 |
422 | 423 | 2.755469 | CACATTCCCAAGGCCCGG | 60.755 | 66.667 | 0.00 | 0.00 | 0.00 | 5.73 |
423 | 424 | 2.035626 | ACACATTCCCAAGGCCCG | 59.964 | 61.111 | 0.00 | 0.00 | 0.00 | 6.13 |
424 | 425 | 0.623723 | TAGACACATTCCCAAGGCCC | 59.376 | 55.000 | 0.00 | 0.00 | 0.00 | 5.80 |
425 | 426 | 2.301346 | CATAGACACATTCCCAAGGCC | 58.699 | 52.381 | 0.00 | 0.00 | 0.00 | 5.19 |
426 | 427 | 1.678101 | GCATAGACACATTCCCAAGGC | 59.322 | 52.381 | 0.00 | 0.00 | 0.00 | 4.35 |
427 | 428 | 3.003394 | TGCATAGACACATTCCCAAGG | 57.997 | 47.619 | 0.00 | 0.00 | 0.00 | 3.61 |
428 | 429 | 5.179045 | GAATGCATAGACACATTCCCAAG | 57.821 | 43.478 | 0.00 | 0.00 | 44.09 | 3.61 |
433 | 434 | 9.177304 | CAAATATGTGAATGCATAGACACATTC | 57.823 | 33.333 | 31.80 | 15.42 | 46.98 | 2.67 |
434 | 435 | 8.905850 | TCAAATATGTGAATGCATAGACACATT | 58.094 | 29.630 | 31.80 | 21.67 | 46.98 | 2.71 |
436 | 437 | 7.862512 | TCAAATATGTGAATGCATAGACACA | 57.137 | 32.000 | 25.19 | 25.19 | 45.06 | 3.72 |
437 | 438 | 9.740239 | AAATCAAATATGTGAATGCATAGACAC | 57.260 | 29.630 | 18.36 | 18.36 | 35.16 | 3.67 |
533 | 534 | 4.705337 | AACACACTTCGGTTGCTAAAAA | 57.295 | 36.364 | 0.00 | 0.00 | 0.00 | 1.94 |
534 | 535 | 4.705337 | AAACACACTTCGGTTGCTAAAA | 57.295 | 36.364 | 0.00 | 0.00 | 0.00 | 1.52 |
535 | 536 | 4.705337 | AAAACACACTTCGGTTGCTAAA | 57.295 | 36.364 | 0.00 | 0.00 | 0.00 | 1.85 |
536 | 537 | 4.705337 | AAAAACACACTTCGGTTGCTAA | 57.295 | 36.364 | 0.00 | 0.00 | 0.00 | 3.09 |
558 | 559 | 9.874205 | CAGGGCTCTTGATATTTGAAATTTTTA | 57.126 | 29.630 | 0.00 | 0.00 | 0.00 | 1.52 |
559 | 560 | 7.825761 | CCAGGGCTCTTGATATTTGAAATTTTT | 59.174 | 33.333 | 0.00 | 0.00 | 0.00 | 1.94 |
560 | 561 | 7.180766 | TCCAGGGCTCTTGATATTTGAAATTTT | 59.819 | 33.333 | 0.00 | 0.00 | 0.00 | 1.82 |
561 | 562 | 6.669154 | TCCAGGGCTCTTGATATTTGAAATTT | 59.331 | 34.615 | 0.00 | 0.00 | 0.00 | 1.82 |
562 | 563 | 6.197168 | TCCAGGGCTCTTGATATTTGAAATT | 58.803 | 36.000 | 0.00 | 0.00 | 0.00 | 1.82 |
563 | 564 | 5.769835 | TCCAGGGCTCTTGATATTTGAAAT | 58.230 | 37.500 | 0.00 | 0.00 | 0.00 | 2.17 |
564 | 565 | 5.191727 | TCCAGGGCTCTTGATATTTGAAA | 57.808 | 39.130 | 0.00 | 0.00 | 0.00 | 2.69 |
565 | 566 | 4.785301 | CTCCAGGGCTCTTGATATTTGAA | 58.215 | 43.478 | 0.00 | 0.00 | 0.00 | 2.69 |
566 | 567 | 3.434167 | GCTCCAGGGCTCTTGATATTTGA | 60.434 | 47.826 | 0.00 | 0.00 | 0.00 | 2.69 |
567 | 568 | 2.883386 | GCTCCAGGGCTCTTGATATTTG | 59.117 | 50.000 | 0.00 | 0.00 | 0.00 | 2.32 |
568 | 569 | 2.158549 | GGCTCCAGGGCTCTTGATATTT | 60.159 | 50.000 | 0.00 | 0.00 | 37.53 | 1.40 |
569 | 570 | 1.423161 | GGCTCCAGGGCTCTTGATATT | 59.577 | 52.381 | 0.00 | 0.00 | 37.53 | 1.28 |
570 | 571 | 1.063183 | GGCTCCAGGGCTCTTGATAT | 58.937 | 55.000 | 0.00 | 0.00 | 37.53 | 1.63 |
571 | 572 | 1.056700 | GGGCTCCAGGGCTCTTGATA | 61.057 | 60.000 | 0.00 | 0.00 | 40.65 | 2.15 |
572 | 573 | 2.381941 | GGGCTCCAGGGCTCTTGAT | 61.382 | 63.158 | 0.00 | 0.00 | 40.65 | 2.57 |
573 | 574 | 3.011517 | GGGCTCCAGGGCTCTTGA | 61.012 | 66.667 | 0.00 | 0.00 | 40.65 | 3.02 |
574 | 575 | 4.479993 | CGGGCTCCAGGGCTCTTG | 62.480 | 72.222 | 0.00 | 0.00 | 40.65 | 3.02 |
581 | 582 | 3.854669 | CAGCTACCGGGCTCCAGG | 61.855 | 72.222 | 6.32 | 3.47 | 41.00 | 4.45 |
582 | 583 | 4.537433 | GCAGCTACCGGGCTCCAG | 62.537 | 72.222 | 6.32 | 0.00 | 41.00 | 3.86 |
584 | 585 | 4.096003 | TTGCAGCTACCGGGCTCC | 62.096 | 66.667 | 6.32 | 0.00 | 41.00 | 4.70 |
585 | 586 | 2.512515 | CTTGCAGCTACCGGGCTC | 60.513 | 66.667 | 6.32 | 1.03 | 41.00 | 4.70 |
586 | 587 | 4.785453 | GCTTGCAGCTACCGGGCT | 62.785 | 66.667 | 6.32 | 1.97 | 44.10 | 5.19 |
588 | 589 | 3.127533 | GTGCTTGCAGCTACCGGG | 61.128 | 66.667 | 6.32 | 0.00 | 42.97 | 5.73 |
589 | 590 | 1.237285 | AAAGTGCTTGCAGCTACCGG | 61.237 | 55.000 | 0.00 | 0.00 | 42.97 | 5.28 |
590 | 591 | 0.593128 | AAAAGTGCTTGCAGCTACCG | 59.407 | 50.000 | 9.12 | 0.00 | 42.97 | 4.02 |
591 | 592 | 1.400242 | CGAAAAGTGCTTGCAGCTACC | 60.400 | 52.381 | 9.12 | 0.00 | 42.97 | 3.18 |
592 | 593 | 1.531149 | TCGAAAAGTGCTTGCAGCTAC | 59.469 | 47.619 | 9.12 | 6.29 | 42.97 | 3.58 |
593 | 594 | 1.800586 | CTCGAAAAGTGCTTGCAGCTA | 59.199 | 47.619 | 9.12 | 0.00 | 42.97 | 3.32 |
594 | 595 | 0.590195 | CTCGAAAAGTGCTTGCAGCT | 59.410 | 50.000 | 9.12 | 0.00 | 42.97 | 4.24 |
595 | 596 | 1.000736 | GCTCGAAAAGTGCTTGCAGC | 61.001 | 55.000 | 0.00 | 1.70 | 42.82 | 5.25 |
596 | 597 | 0.590195 | AGCTCGAAAAGTGCTTGCAG | 59.410 | 50.000 | 0.00 | 0.00 | 46.35 | 4.41 |
597 | 598 | 2.706636 | AGCTCGAAAAGTGCTTGCA | 58.293 | 47.368 | 0.00 | 0.00 | 46.35 | 4.08 |
602 | 603 | 0.030638 | TTGGCAAGCTCGAAAAGTGC | 59.969 | 50.000 | 0.00 | 0.00 | 39.48 | 4.40 |
603 | 604 | 2.042104 | CTTGGCAAGCTCGAAAAGTG | 57.958 | 50.000 | 15.25 | 0.00 | 0.00 | 3.16 |
614 | 615 | 0.908198 | AGAGAGTAGGGCTTGGCAAG | 59.092 | 55.000 | 22.75 | 22.75 | 0.00 | 4.01 |
615 | 616 | 0.905357 | GAGAGAGTAGGGCTTGGCAA | 59.095 | 55.000 | 0.00 | 0.00 | 0.00 | 4.52 |
616 | 617 | 0.041833 | AGAGAGAGTAGGGCTTGGCA | 59.958 | 55.000 | 0.00 | 0.00 | 0.00 | 4.92 |
617 | 618 | 0.750249 | GAGAGAGAGTAGGGCTTGGC | 59.250 | 60.000 | 0.00 | 0.00 | 0.00 | 4.52 |
618 | 619 | 2.091885 | AGAGAGAGAGAGTAGGGCTTGG | 60.092 | 54.545 | 0.00 | 0.00 | 0.00 | 3.61 |
619 | 620 | 3.117888 | AGAGAGAGAGAGAGTAGGGCTTG | 60.118 | 52.174 | 0.00 | 0.00 | 0.00 | 4.01 |
620 | 621 | 3.123273 | AGAGAGAGAGAGAGTAGGGCTT | 58.877 | 50.000 | 0.00 | 0.00 | 0.00 | 4.35 |
621 | 622 | 2.706190 | GAGAGAGAGAGAGAGTAGGGCT | 59.294 | 54.545 | 0.00 | 0.00 | 0.00 | 5.19 |
622 | 623 | 2.706190 | AGAGAGAGAGAGAGAGTAGGGC | 59.294 | 54.545 | 0.00 | 0.00 | 0.00 | 5.19 |
623 | 624 | 4.227197 | AGAGAGAGAGAGAGAGAGTAGGG | 58.773 | 52.174 | 0.00 | 0.00 | 0.00 | 3.53 |
624 | 625 | 5.144100 | AGAGAGAGAGAGAGAGAGAGTAGG | 58.856 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
625 | 626 | 6.068010 | AGAGAGAGAGAGAGAGAGAGAGTAG | 58.932 | 48.000 | 0.00 | 0.00 | 0.00 | 2.57 |
626 | 627 | 6.019656 | AGAGAGAGAGAGAGAGAGAGAGTA | 57.980 | 45.833 | 0.00 | 0.00 | 0.00 | 2.59 |
627 | 628 | 4.877773 | AGAGAGAGAGAGAGAGAGAGAGT | 58.122 | 47.826 | 0.00 | 0.00 | 0.00 | 3.24 |
665 | 666 | 2.224159 | AAGGGGACAGCGACATGGT | 61.224 | 57.895 | 0.00 | 0.00 | 0.00 | 3.55 |
666 | 667 | 1.746615 | CAAGGGGACAGCGACATGG | 60.747 | 63.158 | 0.00 | 0.00 | 0.00 | 3.66 |
673 | 674 | 0.591659 | GAAAACGACAAGGGGACAGC | 59.408 | 55.000 | 0.00 | 0.00 | 0.00 | 4.40 |
961 | 964 | 1.959226 | CGGTGCAAGGTAAGTGCGT | 60.959 | 57.895 | 0.00 | 0.00 | 45.27 | 5.24 |
993 | 996 | 2.387757 | CACAATTTGGTAGGGGGATGG | 58.612 | 52.381 | 0.78 | 0.00 | 0.00 | 3.51 |
994 | 997 | 1.756538 | GCACAATTTGGTAGGGGGATG | 59.243 | 52.381 | 0.78 | 0.00 | 0.00 | 3.51 |
998 | 1001 | 0.894835 | GGTGCACAATTTGGTAGGGG | 59.105 | 55.000 | 20.43 | 0.00 | 0.00 | 4.79 |
1003 | 1006 | 2.433604 | TGACAATGGTGCACAATTTGGT | 59.566 | 40.909 | 17.11 | 12.72 | 0.00 | 3.67 |
1015 | 1018 | 2.834113 | AGGTAGCTAGGTGACAATGGT | 58.166 | 47.619 | 4.27 | 0.00 | 0.00 | 3.55 |
1125 | 1163 | 2.394563 | CCACACACACACACACGCA | 61.395 | 57.895 | 0.00 | 0.00 | 0.00 | 5.24 |
1126 | 1164 | 2.403186 | CCACACACACACACACGC | 59.597 | 61.111 | 0.00 | 0.00 | 0.00 | 5.34 |
1127 | 1165 | 0.808060 | TAGCCACACACACACACACG | 60.808 | 55.000 | 0.00 | 0.00 | 0.00 | 4.49 |
1128 | 1166 | 1.330521 | CTTAGCCACACACACACACAC | 59.669 | 52.381 | 0.00 | 0.00 | 0.00 | 3.82 |
1129 | 1167 | 1.662517 | CTTAGCCACACACACACACA | 58.337 | 50.000 | 0.00 | 0.00 | 0.00 | 3.72 |
1130 | 1168 | 0.307760 | GCTTAGCCACACACACACAC | 59.692 | 55.000 | 0.00 | 0.00 | 0.00 | 3.82 |
1185 | 1223 | 4.332268 | GCTCTCTGCTGTATCTTTTCTTGG | 59.668 | 45.833 | 0.00 | 0.00 | 38.95 | 3.61 |
1365 | 1403 | 0.318784 | GTAGGGGATCATGACGCGAC | 60.319 | 60.000 | 15.93 | 7.62 | 0.00 | 5.19 |
1477 | 1521 | 4.547367 | GCCGCCGCCAGAAGGTAT | 62.547 | 66.667 | 0.00 | 0.00 | 37.19 | 2.73 |
1498 | 1542 | 4.624364 | TGCGGCAGCCCATATCCG | 62.624 | 66.667 | 5.63 | 0.00 | 44.33 | 4.18 |
1644 | 1688 | 1.478510 | ACCTGGTGATCGTCTGATGAC | 59.521 | 52.381 | 0.00 | 0.00 | 37.92 | 3.06 |
1653 | 1697 | 8.888579 | ATTAAGAGTTAATAACCTGGTGATCG | 57.111 | 34.615 | 0.00 | 0.00 | 34.22 | 3.69 |
2031 | 2075 | 8.636213 | CCAATGGAAATGCATAGAAAGAACTAT | 58.364 | 33.333 | 0.00 | 0.00 | 33.95 | 2.12 |
2065 | 2109 | 6.974932 | TCAGTCTAGTGAAAAATGATGCTC | 57.025 | 37.500 | 0.00 | 0.00 | 0.00 | 4.26 |
2085 | 2129 | 9.878599 | ACGTGAAGTATTTAATTGTTCTTTCAG | 57.121 | 29.630 | 0.00 | 0.00 | 0.00 | 3.02 |
2110 | 2154 | 7.747799 | CAGACACAGAATGACAATTTCACATAC | 59.252 | 37.037 | 0.00 | 0.00 | 39.69 | 2.39 |
2112 | 2156 | 6.675026 | CAGACACAGAATGACAATTTCACAT | 58.325 | 36.000 | 0.00 | 0.00 | 39.69 | 3.21 |
2168 | 2214 | 5.319140 | TGCATCAAATGTCAGGAATTCAG | 57.681 | 39.130 | 7.93 | 0.00 | 0.00 | 3.02 |
2229 | 2528 | 7.707624 | ACATCATGAAAGGATTAAAGAAGCA | 57.292 | 32.000 | 0.00 | 0.00 | 33.46 | 3.91 |
2239 | 2538 | 7.356680 | TCCTCCAATAAACATCATGAAAGGAT | 58.643 | 34.615 | 0.00 | 0.00 | 38.24 | 3.24 |
2555 | 2854 | 8.918202 | ACCAAACTAAGACATCAGATGTTAAA | 57.082 | 30.769 | 17.43 | 5.20 | 45.03 | 1.52 |
2685 | 3015 | 6.039941 | TGTCGATTAAATGTGGAAAACTTGGT | 59.960 | 34.615 | 0.00 | 0.00 | 0.00 | 3.67 |
2703 | 3033 | 9.520204 | GTCAAATCATAAATTTCCATGTCGATT | 57.480 | 29.630 | 0.00 | 0.00 | 0.00 | 3.34 |
2819 | 3150 | 5.182190 | TGAAACACTGCAAGAAACACTAACA | 59.818 | 36.000 | 0.00 | 0.00 | 37.43 | 2.41 |
2870 | 3201 | 2.106683 | CGGCCCAAATCGTCCTCAC | 61.107 | 63.158 | 0.00 | 0.00 | 0.00 | 3.51 |
2877 | 3208 | 2.332312 | TATCCCACCGGCCCAAATCG | 62.332 | 60.000 | 0.00 | 0.00 | 0.00 | 3.34 |
2962 | 3293 | 1.004745 | CAAGGTGCCAAGAGGGTGTAT | 59.995 | 52.381 | 0.00 | 0.00 | 39.65 | 2.29 |
3340 | 3671 | 0.548197 | CCCCAACCCTACCCACTACA | 60.548 | 60.000 | 0.00 | 0.00 | 0.00 | 2.74 |
3341 | 3672 | 0.548439 | ACCCCAACCCTACCCACTAC | 60.548 | 60.000 | 0.00 | 0.00 | 0.00 | 2.73 |
3342 | 3673 | 0.196631 | AACCCCAACCCTACCCACTA | 59.803 | 55.000 | 0.00 | 0.00 | 0.00 | 2.74 |
3343 | 3674 | 0.196631 | TAACCCCAACCCTACCCACT | 59.803 | 55.000 | 0.00 | 0.00 | 0.00 | 4.00 |
3344 | 3675 | 0.329261 | GTAACCCCAACCCTACCCAC | 59.671 | 60.000 | 0.00 | 0.00 | 0.00 | 4.61 |
3345 | 3676 | 0.104037 | TGTAACCCCAACCCTACCCA | 60.104 | 55.000 | 0.00 | 0.00 | 0.00 | 4.51 |
3346 | 3677 | 1.074766 | TTGTAACCCCAACCCTACCC | 58.925 | 55.000 | 0.00 | 0.00 | 0.00 | 3.69 |
3347 | 3678 | 1.424684 | TGTTGTAACCCCAACCCTACC | 59.575 | 52.381 | 0.00 | 0.00 | 43.22 | 3.18 |
3348 | 3679 | 2.955342 | TGTTGTAACCCCAACCCTAC | 57.045 | 50.000 | 0.00 | 0.00 | 43.22 | 3.18 |
3349 | 3680 | 3.054576 | TCTTGTTGTAACCCCAACCCTA | 58.945 | 45.455 | 0.00 | 0.00 | 43.22 | 3.53 |
3350 | 3681 | 1.854280 | TCTTGTTGTAACCCCAACCCT | 59.146 | 47.619 | 0.00 | 0.00 | 43.22 | 4.34 |
3442 | 3773 | 2.094494 | ACACACTCTATTGCTCCGTCTG | 60.094 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
3490 | 3821 | 4.501400 | CCACCTCCCACAAAAGTCAATTTC | 60.501 | 45.833 | 0.00 | 0.00 | 0.00 | 2.17 |
3493 | 3824 | 2.597455 | CCACCTCCCACAAAAGTCAAT | 58.403 | 47.619 | 0.00 | 0.00 | 0.00 | 2.57 |
3568 | 3903 | 6.489127 | TCACAACGGAACAACCTTATATTG | 57.511 | 37.500 | 0.00 | 0.00 | 36.31 | 1.90 |
3576 | 3911 | 1.600023 | TGGATCACAACGGAACAACC | 58.400 | 50.000 | 0.00 | 0.00 | 0.00 | 3.77 |
3583 | 3918 | 4.503741 | ACTTGAATTTGGATCACAACGG | 57.496 | 40.909 | 0.00 | 0.00 | 39.19 | 4.44 |
3584 | 3919 | 9.787532 | ATTTATACTTGAATTTGGATCACAACG | 57.212 | 29.630 | 0.00 | 0.00 | 39.19 | 4.10 |
3610 | 3945 | 5.103000 | GCTCGTCAGAAGTTAGCATTTCTA | 58.897 | 41.667 | 0.00 | 0.00 | 32.62 | 2.10 |
3616 | 3951 | 0.109272 | CCGCTCGTCAGAAGTTAGCA | 60.109 | 55.000 | 0.00 | 0.00 | 32.69 | 3.49 |
3652 | 3987 | 3.003173 | AGCCCAAGCCTACTCGCA | 61.003 | 61.111 | 0.00 | 0.00 | 41.25 | 5.10 |
3654 | 3989 | 0.460987 | CTTCAGCCCAAGCCTACTCG | 60.461 | 60.000 | 0.00 | 0.00 | 41.25 | 4.18 |
3655 | 3990 | 0.746204 | GCTTCAGCCCAAGCCTACTC | 60.746 | 60.000 | 6.02 | 0.00 | 42.68 | 2.59 |
3656 | 3991 | 1.301293 | GCTTCAGCCCAAGCCTACT | 59.699 | 57.895 | 6.02 | 0.00 | 42.68 | 2.57 |
3741 | 4076 | 6.431234 | GTCAGGGATTACAACTGATCAACTTT | 59.569 | 38.462 | 0.00 | 0.00 | 42.54 | 2.66 |
3763 | 4098 | 1.000060 | CGGAGGAGGTTACAAACGTCA | 60.000 | 52.381 | 12.81 | 0.00 | 45.48 | 4.35 |
3765 | 4100 | 1.331214 | TCGGAGGAGGTTACAAACGT | 58.669 | 50.000 | 0.00 | 0.00 | 0.00 | 3.99 |
3767 | 4102 | 4.377897 | CCATATCGGAGGAGGTTACAAAC | 58.622 | 47.826 | 0.00 | 0.00 | 36.56 | 2.93 |
3780 | 4115 | 1.471829 | ATCACAGGCGCCATATCGGA | 61.472 | 55.000 | 31.54 | 16.82 | 36.56 | 4.55 |
3843 | 4197 | 6.183360 | CGAAGAATGAAAAGCAATCAGAGGAT | 60.183 | 38.462 | 0.00 | 0.00 | 34.43 | 3.24 |
3847 | 4201 | 4.379813 | GGCGAAGAATGAAAAGCAATCAGA | 60.380 | 41.667 | 0.00 | 0.00 | 0.00 | 3.27 |
3861 | 4215 | 3.514645 | GCAAATCAACATGGCGAAGAAT | 58.485 | 40.909 | 0.00 | 0.00 | 0.00 | 2.40 |
3871 | 4225 | 6.363065 | AGAGATATGACAGGCAAATCAACAT | 58.637 | 36.000 | 0.00 | 0.00 | 0.00 | 2.71 |
3922 | 4276 | 9.729281 | AATAGCACCAATCTCAAATTTTCATTT | 57.271 | 25.926 | 0.00 | 0.00 | 32.36 | 2.32 |
3923 | 4277 | 9.729281 | AAATAGCACCAATCTCAAATTTTCATT | 57.271 | 25.926 | 0.00 | 0.00 | 0.00 | 2.57 |
3925 | 4279 | 9.638239 | GTAAATAGCACCAATCTCAAATTTTCA | 57.362 | 29.630 | 0.00 | 0.00 | 0.00 | 2.69 |
3926 | 4280 | 9.087424 | GGTAAATAGCACCAATCTCAAATTTTC | 57.913 | 33.333 | 0.00 | 0.00 | 36.01 | 2.29 |
3927 | 4281 | 8.815912 | AGGTAAATAGCACCAATCTCAAATTTT | 58.184 | 29.630 | 0.00 | 0.00 | 38.62 | 1.82 |
3931 | 4285 | 5.652014 | CCAGGTAAATAGCACCAATCTCAAA | 59.348 | 40.000 | 0.00 | 0.00 | 38.62 | 2.69 |
4012 | 4443 | 2.203153 | CTATTTGGGACGCCGGGG | 60.203 | 66.667 | 18.33 | 18.33 | 0.00 | 5.73 |
4016 | 4447 | 0.451783 | CAGCAACTATTTGGGACGCC | 59.548 | 55.000 | 0.00 | 0.00 | 32.81 | 5.68 |
4018 | 4449 | 6.671614 | TTTATACAGCAACTATTTGGGACG | 57.328 | 37.500 | 0.00 | 0.00 | 32.81 | 4.79 |
4080 | 4876 | 9.499479 | AGCAGATATACAAAACCATGAAGATAG | 57.501 | 33.333 | 0.00 | 0.00 | 0.00 | 2.08 |
4091 | 4887 | 7.367285 | TGTTTGACCAAGCAGATATACAAAAC | 58.633 | 34.615 | 0.00 | 0.00 | 0.00 | 2.43 |
4240 | 5038 | 5.356751 | AGCCGATTGCATAATGAAACAACTA | 59.643 | 36.000 | 0.00 | 0.00 | 44.83 | 2.24 |
4360 | 5159 | 9.513906 | TTGGACATGTCTTAGTTCAAATATTGA | 57.486 | 29.630 | 24.50 | 0.00 | 38.04 | 2.57 |
4365 | 5164 | 7.138736 | CGTTTTGGACATGTCTTAGTTCAAAT | 58.861 | 34.615 | 24.50 | 0.00 | 41.45 | 2.32 |
4418 | 5217 | 7.068103 | TGTGTAGAATGATTGTGTTTTGGTTCT | 59.932 | 33.333 | 0.00 | 0.00 | 0.00 | 3.01 |
4536 | 5335 | 7.398829 | TGTGCAACTACCCAGATAAAGAAATA | 58.601 | 34.615 | 0.00 | 0.00 | 38.04 | 1.40 |
4579 | 5378 | 2.029649 | ACAGATGCACAATTTCACAGCC | 60.030 | 45.455 | 0.00 | 0.00 | 0.00 | 4.85 |
4603 | 5402 | 2.108157 | GGTGTGGTCGTGTGCAGA | 59.892 | 61.111 | 0.00 | 0.00 | 0.00 | 4.26 |
4792 | 5599 | 4.175516 | CGTGCATGCACCAAAAATATTCT | 58.824 | 39.130 | 37.92 | 0.00 | 43.49 | 2.40 |
4813 | 5620 | 1.806623 | GCATCTGTAGTAACCCCTGCG | 60.807 | 57.143 | 0.00 | 0.00 | 0.00 | 5.18 |
5085 | 5892 | 3.147595 | AGCTGGTCGCCGCAGATA | 61.148 | 61.111 | 12.25 | 0.00 | 40.39 | 1.98 |
5234 | 6041 | 1.136992 | CGTAGACGTTTGCACTTGTCG | 60.137 | 52.381 | 0.00 | 1.01 | 36.49 | 4.35 |
5336 | 6143 | 5.036737 | TCGAGCATGCATATATGTATCACG | 58.963 | 41.667 | 21.98 | 16.21 | 30.47 | 4.35 |
5393 | 6200 | 6.374588 | TGTTGTACAAATAAAGGGGGAGAAA | 58.625 | 36.000 | 10.51 | 0.00 | 0.00 | 2.52 |
5396 | 6203 | 4.705023 | CCTGTTGTACAAATAAAGGGGGAG | 59.295 | 45.833 | 10.51 | 0.00 | 0.00 | 4.30 |
5398 | 6205 | 4.668636 | TCCTGTTGTACAAATAAAGGGGG | 58.331 | 43.478 | 10.51 | 4.36 | 0.00 | 5.40 |
5399 | 6206 | 7.614192 | AGTTATCCTGTTGTACAAATAAAGGGG | 59.386 | 37.037 | 10.51 | 5.33 | 0.00 | 4.79 |
5400 | 6207 | 8.575649 | AGTTATCCTGTTGTACAAATAAAGGG | 57.424 | 34.615 | 10.51 | 6.64 | 0.00 | 3.95 |
5504 | 6311 | 6.933521 | GGCATGACACATGTAGATATTTCTCT | 59.066 | 38.462 | 0.00 | 0.00 | 33.17 | 3.10 |
5652 | 6461 | 6.148480 | GTGTGTAGATTCACTCATTTTGCTCT | 59.852 | 38.462 | 0.00 | 0.00 | 38.90 | 4.09 |
5704 | 6513 | 7.595502 | CCTTTTAGCGAATTCGATACAGACTAT | 59.404 | 37.037 | 31.01 | 5.61 | 40.10 | 2.12 |
5842 | 6651 | 0.032813 | TTACTACTCCCCCAGTCCCG | 60.033 | 60.000 | 0.00 | 0.00 | 36.43 | 5.14 |
5905 | 6714 | 3.589288 | ACAGGTCCAGAATCTAAGCCTTT | 59.411 | 43.478 | 0.00 | 0.00 | 0.00 | 3.11 |
5906 | 6715 | 3.054802 | CACAGGTCCAGAATCTAAGCCTT | 60.055 | 47.826 | 0.00 | 0.00 | 0.00 | 4.35 |
5907 | 6716 | 2.503356 | CACAGGTCCAGAATCTAAGCCT | 59.497 | 50.000 | 0.00 | 0.00 | 0.00 | 4.58 |
5915 | 6724 | 3.939740 | ATATGCACACAGGTCCAGAAT | 57.060 | 42.857 | 0.00 | 0.00 | 0.00 | 2.40 |
5958 | 6767 | 5.358160 | CCTCCCAAAATTTAGGCTACTCAAG | 59.642 | 44.000 | 0.00 | 0.00 | 0.00 | 3.02 |
5965 | 6774 | 4.337264 | ACATCCTCCCAAAATTTAGGCT | 57.663 | 40.909 | 0.00 | 0.00 | 0.00 | 4.58 |
6239 | 7059 | 9.360093 | GAGATTATGACTATATTAGTGCACACC | 57.640 | 37.037 | 21.04 | 0.00 | 39.59 | 4.16 |
6387 | 7208 | 9.224267 | CATATGATGTTTTCGGAGGAATAAGAT | 57.776 | 33.333 | 0.00 | 0.00 | 30.88 | 2.40 |
6398 | 7219 | 5.818136 | ACTTCACCATATGATGTTTTCGG | 57.182 | 39.130 | 3.65 | 0.00 | 41.68 | 4.30 |
6441 | 7264 | 1.076332 | GCAACGACGGTATCTTGCTT | 58.924 | 50.000 | 11.55 | 0.00 | 37.93 | 3.91 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.