Multiple sequence alignment - TraesCS4A01G320800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G320800 chr4A 100.000 3223 0 0 3341 6563 609082294 609079072 0.000000e+00 5952.0
1 TraesCS4A01G320800 chr4A 100.000 1720 0 0 1 1720 609085634 609083915 0.000000e+00 3177.0
2 TraesCS4A01G320800 chr4A 100.000 1002 0 0 2025 3026 609083610 609082609 0.000000e+00 1851.0
3 TraesCS4A01G320800 chr4A 78.082 365 50 17 3576 3916 607184919 607185277 3.100000e-48 204.0
4 TraesCS4A01G320800 chr5B 93.681 2532 120 19 4046 6563 705620516 705623021 0.000000e+00 3753.0
5 TraesCS4A01G320800 chr5B 92.061 1121 38 24 629 1716 705616826 705617928 0.000000e+00 1530.0
6 TraesCS4A01G320800 chr5B 93.804 1033 33 10 2025 3026 705618071 705619103 0.000000e+00 1524.0
7 TraesCS4A01G320800 chr5B 89.951 617 53 4 3352 3967 705619395 705620003 0.000000e+00 787.0
8 TraesCS4A01G320800 chr5B 91.003 289 18 5 181 468 677665015 677664734 3.710000e-102 383.0
9 TraesCS4A01G320800 chr5B 86.321 212 25 4 3579 3788 119120491 119120700 1.840000e-55 228.0
10 TraesCS4A01G320800 chr5B 83.333 216 26 6 3576 3788 170678525 170678733 2.420000e-44 191.0
11 TraesCS4A01G320800 chr5B 98.039 51 0 1 3967 4016 705620055 705620105 3.260000e-13 87.9
12 TraesCS4A01G320800 chr5D 93.123 2530 137 22 4046 6563 563401632 563404136 0.000000e+00 3674.0
13 TraesCS4A01G320800 chr5D 90.785 1096 42 17 629 1720 563398397 563399437 0.000000e+00 1410.0
14 TraesCS4A01G320800 chr5D 91.710 772 27 15 2282 3026 563400036 563400797 0.000000e+00 1037.0
15 TraesCS4A01G320800 chr5D 86.427 641 50 13 3352 3967 563400828 563401456 0.000000e+00 667.0
16 TraesCS4A01G320800 chr5D 81.138 334 38 15 3587 3898 108374098 108374428 1.830000e-60 244.0
17 TraesCS4A01G320800 chr5D 79.916 239 25 10 3685 3901 386952544 386952781 3.170000e-33 154.0
18 TraesCS4A01G320800 chr5D 82.692 156 22 4 5603 5757 114623950 114623799 4.130000e-27 134.0
19 TraesCS4A01G320800 chr5A 93.151 292 19 1 178 468 577949991 577950282 1.690000e-115 427.0
20 TraesCS4A01G320800 chr5A 96.154 182 7 0 1 182 312274106 312273925 1.380000e-76 298.0
21 TraesCS4A01G320800 chr5A 98.969 97 1 0 514 610 577950266 577950362 2.430000e-39 174.0
22 TraesCS4A01G320800 chr5A 81.657 169 26 4 5594 5761 633991711 633991875 1.150000e-27 135.0
23 TraesCS4A01G320800 chr7A 93.706 286 14 3 181 465 725215423 725215141 6.080000e-115 425.0
24 TraesCS4A01G320800 chr7A 95.556 180 8 0 1 180 191173012 191172833 8.330000e-74 289.0
25 TraesCS4A01G320800 chr7A 86.957 115 14 1 3788 3901 249286174 249286060 1.920000e-25 128.0
26 TraesCS4A01G320800 chr7A 100.000 31 0 0 581 611 725215059 725215029 2.560000e-04 58.4
27 TraesCS4A01G320800 chr6A 93.080 289 19 1 181 468 287306286 287305998 7.870000e-114 422.0
28 TraesCS4A01G320800 chr6A 82.081 173 27 3 5587 5759 609592946 609593114 1.910000e-30 145.0
29 TraesCS4A01G320800 chr1B 92.759 290 19 2 181 468 69353587 69353298 1.020000e-112 418.0
30 TraesCS4A01G320800 chr1B 96.907 97 3 0 517 613 69353311 69353215 5.270000e-36 163.0
31 TraesCS4A01G320800 chr1B 82.692 156 25 2 5602 5757 585678072 585678225 3.190000e-28 137.0
32 TraesCS4A01G320800 chr3B 90.785 293 21 5 181 468 765087583 765087292 2.870000e-103 387.0
33 TraesCS4A01G320800 chr3B 90.164 61 6 0 3586 3646 18471818 18471758 5.460000e-11 80.5
34 TraesCS4A01G320800 chr6D 90.508 295 23 5 178 468 436731100 436731393 1.030000e-102 385.0
35 TraesCS4A01G320800 chr6D 81.579 228 19 10 3693 3898 3495192 3495418 4.070000e-37 167.0
36 TraesCS4A01G320800 chr6D 79.508 244 25 13 3677 3898 450353526 450353286 4.100000e-32 150.0
37 TraesCS4A01G320800 chr6D 80.184 217 20 6 3710 3904 387789466 387789681 2.470000e-29 141.0
38 TraesCS4A01G320800 chr6D 90.476 105 8 2 3685 3788 379757642 379757539 3.190000e-28 137.0
39 TraesCS4A01G320800 chr2A 90.068 292 24 5 181 468 51660520 51660230 2.230000e-99 374.0
40 TraesCS4A01G320800 chr2A 95.082 183 8 1 1 182 615490270 615490452 2.990000e-73 287.0
41 TraesCS4A01G320800 chr2A 89.583 96 9 1 517 612 85811668 85811574 3.210000e-23 121.0
42 TraesCS4A01G320800 chr1A 90.068 292 24 5 181 468 409958087 409957797 2.230000e-99 374.0
43 TraesCS4A01G320800 chr1A 95.000 180 9 0 1 180 104433835 104434014 3.870000e-72 283.0
44 TraesCS4A01G320800 chr1A 95.000 180 9 0 1 180 262930836 262931015 3.870000e-72 283.0
45 TraesCS4A01G320800 chr1A 96.970 99 3 0 514 612 471708236 471708334 4.070000e-37 167.0
46 TraesCS4A01G320800 chr1D 97.778 180 4 0 1 180 267592485 267592306 1.780000e-80 311.0
47 TraesCS4A01G320800 chr1D 76.991 339 46 16 3586 3904 461206779 461206453 1.460000e-36 165.0
48 TraesCS4A01G320800 chr6B 97.765 179 4 0 2 180 26784246 26784068 6.390000e-80 309.0
49 TraesCS4A01G320800 chr6B 81.166 223 16 8 3590 3788 22713291 22713511 8.810000e-34 156.0
50 TraesCS4A01G320800 chr6B 81.325 166 27 3 5594 5758 192060108 192059946 1.480000e-26 132.0
51 TraesCS4A01G320800 chr3A 84.084 333 31 10 3588 3898 423974028 423974360 1.070000e-77 302.0
52 TraesCS4A01G320800 chr3A 96.685 181 6 0 1 181 696065053 696065233 1.070000e-77 302.0
53 TraesCS4A01G320800 chr7D 95.580 181 6 2 1 180 52945011 52945190 8.330000e-74 289.0
54 TraesCS4A01G320800 chr2B 81.050 343 35 18 3579 3898 120534902 120535237 5.080000e-61 246.0
55 TraesCS4A01G320800 chr2B 79.098 244 25 13 3676 3898 26716762 26717000 1.910000e-30 145.0
56 TraesCS4A01G320800 chr4B 77.297 370 40 15 3576 3902 387336988 387337356 1.880000e-40 178.0
57 TraesCS4A01G320800 chr7B 82.738 168 24 4 5591 5757 289266399 289266236 1.910000e-30 145.0
58 TraesCS4A01G320800 chr2D 81.287 171 25 6 5589 5757 95517325 95517490 1.480000e-26 132.0
59 TraesCS4A01G320800 chr3D 100.000 28 0 0 1514 1541 355425974 355426001 1.200000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G320800 chr4A 609079072 609085634 6562 True 3660.00 5952 100.00000 1 6563 3 chr4A.!!$R1 6562
1 TraesCS4A01G320800 chr5B 705616826 705623021 6195 False 1536.38 3753 93.50720 629 6563 5 chr5B.!!$F3 5934
2 TraesCS4A01G320800 chr5D 563398397 563404136 5739 False 1697.00 3674 90.51125 629 6563 4 chr5D.!!$F3 5934


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
621 622 0.030638 GCACTTTTCGAGCTTGCCAA 59.969 50.000 0.00 0.0 0.00 4.52 F
826 829 0.321122 CCAACAGTGTCCTGAGCTCC 60.321 60.000 12.15 0.0 41.50 4.70 F
1015 1018 0.780637 TCCCCCTACCAAATTGTGCA 59.219 50.000 0.00 0.0 0.00 4.57 F
1653 1697 1.064946 CGGCTCCTCGTCATCAGAC 59.935 63.158 0.00 0.0 41.46 3.51 F
2962 3293 0.179137 CGGAGAGTAGCACGCAATGA 60.179 55.000 0.00 0.0 0.00 2.57 F
3635 3970 0.109272 TGCTAACTTCTGACGAGCGG 60.109 55.000 0.00 0.0 35.88 5.52 F
5085 5892 1.107114 ACGTCGAGCAGATCAATCCT 58.893 50.000 0.00 0.0 0.00 3.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1644 1688 1.478510 ACCTGGTGATCGTCTGATGAC 59.521 52.381 0.00 0.00 37.92 3.06 R
2819 3150 5.182190 TGAAACACTGCAAGAAACACTAACA 59.818 36.000 0.00 0.00 37.43 2.41 R
2962 3293 1.004745 CAAGGTGCCAAGAGGGTGTAT 59.995 52.381 0.00 0.00 39.65 2.29 R
3345 3676 0.104037 TGTAACCCCAACCCTACCCA 60.104 55.000 0.00 0.00 0.00 4.51 R
4016 4447 0.451783 CAGCAACTATTTGGGACGCC 59.548 55.000 0.00 0.00 32.81 5.68 R
5234 6041 1.136992 CGTAGACGTTTGCACTTGTCG 60.137 52.381 0.00 1.01 36.49 4.35 R
6441 7264 1.076332 GCAACGACGGTATCTTGCTT 58.924 50.000 11.55 0.00 37.93 3.91 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
126 127 9.771534 TTTTGAGTTATGGAAAAGGTATTTTGG 57.228 29.630 0.00 0.00 38.74 3.28
127 128 6.930731 TGAGTTATGGAAAAGGTATTTTGGC 58.069 36.000 0.00 0.00 38.74 4.52
128 129 6.723977 TGAGTTATGGAAAAGGTATTTTGGCT 59.276 34.615 0.00 0.00 38.74 4.75
129 130 6.935167 AGTTATGGAAAAGGTATTTTGGCTG 58.065 36.000 0.00 0.00 38.74 4.85
130 131 6.723977 AGTTATGGAAAAGGTATTTTGGCTGA 59.276 34.615 0.00 0.00 38.74 4.26
131 132 7.400052 AGTTATGGAAAAGGTATTTTGGCTGAT 59.600 33.333 0.00 0.00 38.74 2.90
132 133 8.691797 GTTATGGAAAAGGTATTTTGGCTGATA 58.308 33.333 0.00 0.00 38.74 2.15
133 134 7.732222 ATGGAAAAGGTATTTTGGCTGATAA 57.268 32.000 0.00 0.00 38.74 1.75
134 135 7.546250 TGGAAAAGGTATTTTGGCTGATAAA 57.454 32.000 0.00 0.00 38.74 1.40
135 136 8.144862 TGGAAAAGGTATTTTGGCTGATAAAT 57.855 30.769 0.00 0.00 38.74 1.40
136 137 8.040132 TGGAAAAGGTATTTTGGCTGATAAATG 58.960 33.333 0.00 0.00 38.74 2.32
137 138 8.040727 GGAAAAGGTATTTTGGCTGATAAATGT 58.959 33.333 0.00 0.00 38.74 2.71
146 147 7.938140 TTTGGCTGATAAATGTATATAGGGC 57.062 36.000 0.00 0.00 0.00 5.19
147 148 6.891306 TGGCTGATAAATGTATATAGGGCT 57.109 37.500 0.00 0.00 0.00 5.19
148 149 6.889198 TGGCTGATAAATGTATATAGGGCTC 58.111 40.000 0.00 0.00 0.00 4.70
149 150 6.443527 TGGCTGATAAATGTATATAGGGCTCA 59.556 38.462 0.00 0.00 0.00 4.26
150 151 7.037658 TGGCTGATAAATGTATATAGGGCTCAA 60.038 37.037 0.00 0.00 0.00 3.02
151 152 7.995488 GGCTGATAAATGTATATAGGGCTCAAT 59.005 37.037 0.00 0.00 0.00 2.57
152 153 8.834465 GCTGATAAATGTATATAGGGCTCAATG 58.166 37.037 0.00 0.00 0.00 2.82
153 154 9.334947 CTGATAAATGTATATAGGGCTCAATGG 57.665 37.037 0.00 0.00 0.00 3.16
154 155 9.056799 TGATAAATGTATATAGGGCTCAATGGA 57.943 33.333 0.00 0.00 0.00 3.41
155 156 9.553064 GATAAATGTATATAGGGCTCAATGGAG 57.447 37.037 0.00 0.00 44.33 3.86
163 164 2.906458 CTCAATGGAGCTCGGCCT 59.094 61.111 7.83 0.00 33.67 5.19
164 165 1.227497 CTCAATGGAGCTCGGCCTC 60.227 63.158 7.83 0.00 33.67 4.70
165 166 1.684386 CTCAATGGAGCTCGGCCTCT 61.684 60.000 7.83 0.00 33.67 3.69
166 167 1.523258 CAATGGAGCTCGGCCTCTG 60.523 63.158 7.83 0.00 32.43 3.35
167 168 3.397613 AATGGAGCTCGGCCTCTGC 62.398 63.158 7.83 1.79 32.43 4.26
169 170 4.527583 GGAGCTCGGCCTCTGCAG 62.528 72.222 7.63 7.63 40.13 4.41
177 178 3.769201 GCCTCTGCAGCCACTTTT 58.231 55.556 9.47 0.00 37.47 2.27
178 179 1.583477 GCCTCTGCAGCCACTTTTC 59.417 57.895 9.47 0.00 37.47 2.29
179 180 1.871772 CCTCTGCAGCCACTTTTCG 59.128 57.895 9.47 0.00 0.00 3.46
180 181 0.603707 CCTCTGCAGCCACTTTTCGA 60.604 55.000 9.47 0.00 0.00 3.71
181 182 1.446907 CTCTGCAGCCACTTTTCGAT 58.553 50.000 9.47 0.00 0.00 3.59
182 183 2.621338 CTCTGCAGCCACTTTTCGATA 58.379 47.619 9.47 0.00 0.00 2.92
183 184 3.201290 CTCTGCAGCCACTTTTCGATAT 58.799 45.455 9.47 0.00 0.00 1.63
184 185 3.609853 TCTGCAGCCACTTTTCGATATT 58.390 40.909 9.47 0.00 0.00 1.28
185 186 4.009675 TCTGCAGCCACTTTTCGATATTT 58.990 39.130 9.47 0.00 0.00 1.40
186 187 5.182487 TCTGCAGCCACTTTTCGATATTTA 58.818 37.500 9.47 0.00 0.00 1.40
187 188 5.645929 TCTGCAGCCACTTTTCGATATTTAA 59.354 36.000 9.47 0.00 0.00 1.52
188 189 6.150307 TCTGCAGCCACTTTTCGATATTTAAA 59.850 34.615 9.47 0.00 0.00 1.52
189 190 6.090129 TGCAGCCACTTTTCGATATTTAAAC 58.910 36.000 0.00 0.00 0.00 2.01
190 191 6.090129 GCAGCCACTTTTCGATATTTAAACA 58.910 36.000 0.00 0.00 0.00 2.83
191 192 6.751888 GCAGCCACTTTTCGATATTTAAACAT 59.248 34.615 0.00 0.00 0.00 2.71
192 193 7.275560 GCAGCCACTTTTCGATATTTAAACATT 59.724 33.333 0.00 0.00 0.00 2.71
193 194 9.139174 CAGCCACTTTTCGATATTTAAACATTT 57.861 29.630 0.00 0.00 0.00 2.32
194 195 9.705290 AGCCACTTTTCGATATTTAAACATTTT 57.295 25.926 0.00 0.00 0.00 1.82
195 196 9.739786 GCCACTTTTCGATATTTAAACATTTTG 57.260 29.630 0.00 0.00 0.00 2.44
210 211 9.760660 TTAAACATTTTGAAATTCGTGTTTTGG 57.239 25.926 17.08 0.00 29.40 3.28
211 212 7.602517 AACATTTTGAAATTCGTGTTTTGGA 57.397 28.000 0.00 0.00 0.00 3.53
212 213 7.602517 ACATTTTGAAATTCGTGTTTTGGAA 57.397 28.000 0.00 0.00 0.00 3.53
213 214 7.683746 ACATTTTGAAATTCGTGTTTTGGAAG 58.316 30.769 0.00 0.00 0.00 3.46
214 215 7.333174 ACATTTTGAAATTCGTGTTTTGGAAGT 59.667 29.630 0.00 0.00 0.00 3.01
215 216 7.659652 TTTTGAAATTCGTGTTTTGGAAGTT 57.340 28.000 0.00 0.00 33.68 2.66
216 217 7.659652 TTTGAAATTCGTGTTTTGGAAGTTT 57.340 28.000 0.00 0.00 31.45 2.66
217 218 6.879188 TGAAATTCGTGTTTTGGAAGTTTC 57.121 33.333 0.00 0.00 31.45 2.78
218 219 6.390721 TGAAATTCGTGTTTTGGAAGTTTCA 58.609 32.000 0.00 0.00 31.45 2.69
219 220 6.868864 TGAAATTCGTGTTTTGGAAGTTTCAA 59.131 30.769 0.00 0.00 32.86 2.69
220 221 7.385205 TGAAATTCGTGTTTTGGAAGTTTCAAA 59.615 29.630 5.15 5.15 32.86 2.69
221 222 7.659652 AATTCGTGTTTTGGAAGTTTCAAAA 57.340 28.000 16.59 16.59 40.46 2.44
222 223 7.659652 ATTCGTGTTTTGGAAGTTTCAAAAA 57.340 28.000 21.10 8.12 43.08 1.94
258 259 8.918202 TTTTCAGGGGATACATATACACATTC 57.082 34.615 0.00 0.00 39.74 2.67
259 260 6.620877 TCAGGGGATACATATACACATTCC 57.379 41.667 0.00 0.00 39.74 3.01
260 261 5.186992 TCAGGGGATACATATACACATTCCG 59.813 44.000 0.00 0.00 39.74 4.30
261 262 5.186992 CAGGGGATACATATACACATTCCGA 59.813 44.000 0.00 0.00 39.74 4.55
262 263 5.783360 AGGGGATACATATACACATTCCGAA 59.217 40.000 0.00 0.00 39.74 4.30
263 264 6.443849 AGGGGATACATATACACATTCCGAAT 59.556 38.462 0.00 0.00 39.74 3.34
264 265 7.622081 AGGGGATACATATACACATTCCGAATA 59.378 37.037 0.00 0.00 39.74 1.75
265 266 7.709613 GGGGATACATATACACATTCCGAATAC 59.290 40.741 0.00 0.00 39.74 1.89
266 267 7.709613 GGGATACATATACACATTCCGAATACC 59.290 40.741 0.00 0.00 39.74 2.73
267 268 7.709613 GGATACATATACACATTCCGAATACCC 59.290 40.741 0.00 0.00 0.00 3.69
268 269 5.475719 ACATATACACATTCCGAATACCCG 58.524 41.667 0.00 0.00 0.00 5.28
269 270 5.011329 ACATATACACATTCCGAATACCCGT 59.989 40.000 0.00 0.00 0.00 5.28
270 271 2.018542 ACACATTCCGAATACCCGTG 57.981 50.000 7.45 7.45 0.00 4.94
271 272 1.295792 CACATTCCGAATACCCGTGG 58.704 55.000 0.00 0.00 0.00 4.94
272 273 0.463116 ACATTCCGAATACCCGTGGC 60.463 55.000 0.00 0.00 0.00 5.01
273 274 0.462937 CATTCCGAATACCCGTGGCA 60.463 55.000 0.00 0.00 0.00 4.92
274 275 0.253610 ATTCCGAATACCCGTGGCAA 59.746 50.000 0.00 0.00 0.00 4.52
275 276 0.391927 TTCCGAATACCCGTGGCAAG 60.392 55.000 0.00 0.00 0.00 4.01
276 277 1.078708 CCGAATACCCGTGGCAAGT 60.079 57.895 0.00 0.00 0.00 3.16
277 278 0.675522 CCGAATACCCGTGGCAAGTT 60.676 55.000 0.00 0.00 0.00 2.66
278 279 1.161843 CGAATACCCGTGGCAAGTTT 58.838 50.000 0.00 0.00 0.00 2.66
279 280 1.538075 CGAATACCCGTGGCAAGTTTT 59.462 47.619 0.00 0.00 0.00 2.43
280 281 2.667171 CGAATACCCGTGGCAAGTTTTG 60.667 50.000 0.00 0.00 0.00 2.44
281 282 1.253100 ATACCCGTGGCAAGTTTTGG 58.747 50.000 0.00 0.00 0.00 3.28
282 283 0.106619 TACCCGTGGCAAGTTTTGGT 60.107 50.000 0.00 2.20 0.00 3.67
283 284 0.106619 ACCCGTGGCAAGTTTTGGTA 60.107 50.000 0.00 0.00 0.00 3.25
284 285 0.596082 CCCGTGGCAAGTTTTGGTAG 59.404 55.000 0.00 0.00 0.00 3.18
285 286 1.600023 CCGTGGCAAGTTTTGGTAGA 58.400 50.000 0.00 0.00 0.00 2.59
286 287 1.950909 CCGTGGCAAGTTTTGGTAGAA 59.049 47.619 0.00 0.00 0.00 2.10
287 288 2.359531 CCGTGGCAAGTTTTGGTAGAAA 59.640 45.455 0.00 0.00 0.00 2.52
288 289 3.005367 CCGTGGCAAGTTTTGGTAGAAAT 59.995 43.478 0.00 0.00 0.00 2.17
289 290 4.226761 CGTGGCAAGTTTTGGTAGAAATC 58.773 43.478 0.00 0.00 0.00 2.17
290 291 4.023193 CGTGGCAAGTTTTGGTAGAAATCT 60.023 41.667 0.00 0.00 0.00 2.40
291 292 5.461526 GTGGCAAGTTTTGGTAGAAATCTC 58.538 41.667 0.00 0.00 0.00 2.75
292 293 4.215399 TGGCAAGTTTTGGTAGAAATCTCG 59.785 41.667 0.00 0.00 0.00 4.04
293 294 4.159120 GCAAGTTTTGGTAGAAATCTCGC 58.841 43.478 0.00 0.00 0.00 5.03
294 295 4.083271 GCAAGTTTTGGTAGAAATCTCGCT 60.083 41.667 0.00 0.00 0.00 4.93
295 296 5.562890 GCAAGTTTTGGTAGAAATCTCGCTT 60.563 40.000 0.00 0.00 0.00 4.68
296 297 6.438763 CAAGTTTTGGTAGAAATCTCGCTTT 58.561 36.000 0.00 0.00 0.00 3.51
297 298 6.002062 AGTTTTGGTAGAAATCTCGCTTTG 57.998 37.500 0.00 0.00 0.00 2.77
298 299 5.531287 AGTTTTGGTAGAAATCTCGCTTTGT 59.469 36.000 0.00 0.00 0.00 2.83
299 300 6.039382 AGTTTTGGTAGAAATCTCGCTTTGTT 59.961 34.615 0.00 0.00 0.00 2.83
300 301 6.385649 TTTGGTAGAAATCTCGCTTTGTTT 57.614 33.333 0.00 0.00 0.00 2.83
301 302 6.385649 TTGGTAGAAATCTCGCTTTGTTTT 57.614 33.333 0.00 0.00 0.00 2.43
302 303 5.757886 TGGTAGAAATCTCGCTTTGTTTTG 58.242 37.500 0.00 0.00 0.00 2.44
303 304 5.154222 GGTAGAAATCTCGCTTTGTTTTGG 58.846 41.667 0.00 0.00 0.00 3.28
304 305 4.243007 AGAAATCTCGCTTTGTTTTGGG 57.757 40.909 0.00 0.00 0.00 4.12
305 306 2.438868 AATCTCGCTTTGTTTTGGGC 57.561 45.000 0.00 0.00 0.00 5.36
306 307 1.620822 ATCTCGCTTTGTTTTGGGCT 58.379 45.000 0.00 0.00 0.00 5.19
307 308 2.264005 TCTCGCTTTGTTTTGGGCTA 57.736 45.000 0.00 0.00 0.00 3.93
308 309 2.790433 TCTCGCTTTGTTTTGGGCTAT 58.210 42.857 0.00 0.00 0.00 2.97
309 310 3.945346 TCTCGCTTTGTTTTGGGCTATA 58.055 40.909 0.00 0.00 0.00 1.31
310 311 3.938963 TCTCGCTTTGTTTTGGGCTATAG 59.061 43.478 0.00 0.00 0.00 1.31
311 312 3.938963 CTCGCTTTGTTTTGGGCTATAGA 59.061 43.478 3.21 0.00 0.00 1.98
312 313 4.328536 TCGCTTTGTTTTGGGCTATAGAA 58.671 39.130 3.21 0.00 0.00 2.10
313 314 4.762765 TCGCTTTGTTTTGGGCTATAGAAA 59.237 37.500 3.21 0.00 0.00 2.52
314 315 5.241949 TCGCTTTGTTTTGGGCTATAGAAAA 59.758 36.000 3.21 0.00 0.00 2.29
315 316 5.923684 CGCTTTGTTTTGGGCTATAGAAAAA 59.076 36.000 3.21 4.36 0.00 1.94
353 354 9.066892 TGACAATATATAAGAGAAAATGGGTGC 57.933 33.333 0.00 0.00 0.00 5.01
354 355 8.409358 ACAATATATAAGAGAAAATGGGTGCC 57.591 34.615 0.00 0.00 0.00 5.01
355 356 8.004215 ACAATATATAAGAGAAAATGGGTGCCA 58.996 33.333 0.00 0.00 38.19 4.92
366 367 2.079170 TGGGTGCCATTTTTGTCAGA 57.921 45.000 0.00 0.00 0.00 3.27
367 368 2.392662 TGGGTGCCATTTTTGTCAGAA 58.607 42.857 0.00 0.00 0.00 3.02
368 369 2.768527 TGGGTGCCATTTTTGTCAGAAA 59.231 40.909 0.00 0.00 0.00 2.52
369 370 3.390639 TGGGTGCCATTTTTGTCAGAAAT 59.609 39.130 0.00 0.00 0.00 2.17
370 371 4.141528 TGGGTGCCATTTTTGTCAGAAATT 60.142 37.500 0.00 0.00 0.00 1.82
371 372 4.821260 GGGTGCCATTTTTGTCAGAAATTT 59.179 37.500 0.00 0.00 0.00 1.82
372 373 5.049474 GGGTGCCATTTTTGTCAGAAATTTC 60.049 40.000 10.33 10.33 0.00 2.17
373 374 5.759763 GGTGCCATTTTTGTCAGAAATTTCT 59.240 36.000 15.11 15.11 38.25 2.52
374 375 6.073602 GGTGCCATTTTTGTCAGAAATTTCTC 60.074 38.462 17.91 8.67 34.74 2.87
375 376 6.703165 GTGCCATTTTTGTCAGAAATTTCTCT 59.297 34.615 17.91 0.00 34.74 3.10
376 377 7.225341 GTGCCATTTTTGTCAGAAATTTCTCTT 59.775 33.333 17.91 0.00 34.74 2.85
377 378 7.769970 TGCCATTTTTGTCAGAAATTTCTCTTT 59.230 29.630 17.91 0.00 34.74 2.52
378 379 8.615211 GCCATTTTTGTCAGAAATTTCTCTTTT 58.385 29.630 17.91 0.00 34.74 2.27
425 426 9.908152 AGTATTTCTTTTTCAGATTTTTACCGG 57.092 29.630 0.00 0.00 0.00 5.28
426 427 9.135843 GTATTTCTTTTTCAGATTTTTACCGGG 57.864 33.333 6.32 0.00 0.00 5.73
427 428 5.128992 TCTTTTTCAGATTTTTACCGGGC 57.871 39.130 6.32 0.00 0.00 6.13
428 429 3.945981 TTTTCAGATTTTTACCGGGCC 57.054 42.857 6.32 0.00 0.00 5.80
429 430 2.891191 TTCAGATTTTTACCGGGCCT 57.109 45.000 6.32 0.00 0.00 5.19
430 431 2.891191 TCAGATTTTTACCGGGCCTT 57.109 45.000 6.32 0.00 0.00 4.35
431 432 2.442413 TCAGATTTTTACCGGGCCTTG 58.558 47.619 6.32 0.00 0.00 3.61
432 433 1.476488 CAGATTTTTACCGGGCCTTGG 59.524 52.381 6.32 12.37 0.00 3.61
433 434 0.821517 GATTTTTACCGGGCCTTGGG 59.178 55.000 17.30 12.06 0.00 4.12
434 435 0.410270 ATTTTTACCGGGCCTTGGGA 59.590 50.000 17.30 7.42 0.00 4.37
435 436 0.187851 TTTTTACCGGGCCTTGGGAA 59.812 50.000 17.30 12.93 0.00 3.97
436 437 0.410270 TTTTACCGGGCCTTGGGAAT 59.590 50.000 17.30 1.31 0.00 3.01
437 438 0.323908 TTTACCGGGCCTTGGGAATG 60.324 55.000 17.30 0.00 0.00 2.67
438 439 1.502527 TTACCGGGCCTTGGGAATGT 61.503 55.000 17.30 0.66 0.00 2.71
439 440 2.204865 TACCGGGCCTTGGGAATGTG 62.205 60.000 17.30 0.00 0.00 3.21
440 441 2.035626 CGGGCCTTGGGAATGTGT 59.964 61.111 0.84 0.00 0.00 3.72
441 442 2.046285 CGGGCCTTGGGAATGTGTC 61.046 63.158 0.84 0.00 0.00 3.67
442 443 1.384191 GGGCCTTGGGAATGTGTCT 59.616 57.895 0.84 0.00 0.00 3.41
443 444 0.623723 GGGCCTTGGGAATGTGTCTA 59.376 55.000 0.84 0.00 0.00 2.59
444 445 1.215423 GGGCCTTGGGAATGTGTCTAT 59.785 52.381 0.84 0.00 0.00 1.98
445 446 2.301346 GGCCTTGGGAATGTGTCTATG 58.699 52.381 0.00 0.00 0.00 2.23
446 447 1.678101 GCCTTGGGAATGTGTCTATGC 59.322 52.381 0.00 0.00 0.00 3.14
447 448 2.945440 GCCTTGGGAATGTGTCTATGCA 60.945 50.000 0.00 0.00 0.00 3.96
448 449 3.559069 CCTTGGGAATGTGTCTATGCAT 58.441 45.455 3.79 3.79 0.00 3.96
449 450 3.956199 CCTTGGGAATGTGTCTATGCATT 59.044 43.478 3.54 0.00 37.94 3.56
450 451 4.037208 CCTTGGGAATGTGTCTATGCATTC 59.963 45.833 3.54 8.30 45.97 2.67
459 460 9.177304 GAATGTGTCTATGCATTCACATATTTG 57.823 33.333 28.09 0.80 46.33 2.32
460 461 7.862512 TGTGTCTATGCATTCACATATTTGA 57.137 32.000 20.22 0.00 36.17 2.69
461 462 8.454570 TGTGTCTATGCATTCACATATTTGAT 57.545 30.769 20.22 0.00 36.17 2.57
462 463 8.905850 TGTGTCTATGCATTCACATATTTGATT 58.094 29.630 20.22 0.00 36.17 2.57
463 464 9.740239 GTGTCTATGCATTCACATATTTGATTT 57.260 29.630 3.54 0.00 32.26 2.17
554 555 4.705337 TTTTTAGCAACCGAAGTGTGTT 57.295 36.364 0.00 0.00 0.00 3.32
555 556 4.705337 TTTTAGCAACCGAAGTGTGTTT 57.295 36.364 0.00 0.00 0.00 2.83
556 557 4.705337 TTTAGCAACCGAAGTGTGTTTT 57.295 36.364 0.00 0.00 0.00 2.43
557 558 4.705337 TTAGCAACCGAAGTGTGTTTTT 57.295 36.364 0.00 0.00 0.00 1.94
584 585 8.782339 AAAAATTTCAAATATCAAGAGCCCTG 57.218 30.769 0.00 0.00 0.00 4.45
585 586 6.475596 AATTTCAAATATCAAGAGCCCTGG 57.524 37.500 0.00 0.00 0.00 4.45
586 587 4.860802 TTCAAATATCAAGAGCCCTGGA 57.139 40.909 0.00 0.00 0.00 3.86
587 588 4.428294 TCAAATATCAAGAGCCCTGGAG 57.572 45.455 0.00 0.00 0.00 3.86
588 589 2.883386 CAAATATCAAGAGCCCTGGAGC 59.117 50.000 0.00 0.00 0.00 4.70
589 590 1.063183 ATATCAAGAGCCCTGGAGCC 58.937 55.000 0.00 0.00 0.00 4.70
590 591 1.056700 TATCAAGAGCCCTGGAGCCC 61.057 60.000 0.00 0.00 0.00 5.19
591 592 4.479993 CAAGAGCCCTGGAGCCCG 62.480 72.222 0.00 0.00 0.00 6.13
598 599 3.854669 CCTGGAGCCCGGTAGCTG 61.855 72.222 10.17 0.00 45.15 4.24
602 603 2.512515 GAGCCCGGTAGCTGCAAG 60.513 66.667 10.17 0.00 45.15 4.01
614 615 3.083213 CTGCAAGCACTTTTCGAGC 57.917 52.632 0.00 0.00 0.00 5.03
615 616 0.590195 CTGCAAGCACTTTTCGAGCT 59.410 50.000 0.00 0.00 41.53 4.09
618 619 3.853623 AAGCACTTTTCGAGCTTGC 57.146 47.368 7.93 5.35 45.82 4.01
619 620 0.312102 AAGCACTTTTCGAGCTTGCC 59.688 50.000 7.93 0.00 45.82 4.52
620 621 0.819259 AGCACTTTTCGAGCTTGCCA 60.819 50.000 0.00 0.00 36.02 4.92
621 622 0.030638 GCACTTTTCGAGCTTGCCAA 59.969 50.000 0.00 0.00 0.00 4.52
622 623 1.927710 GCACTTTTCGAGCTTGCCAAG 60.928 52.381 0.00 0.00 0.00 3.61
662 663 3.953612 CTCTCTCTCTCATAAGTGCCACT 59.046 47.826 0.00 0.00 0.00 4.00
663 664 3.951037 TCTCTCTCTCATAAGTGCCACTC 59.049 47.826 0.00 0.00 0.00 3.51
664 665 3.027412 TCTCTCTCATAAGTGCCACTCC 58.973 50.000 0.00 0.00 0.00 3.85
665 666 2.762887 CTCTCTCATAAGTGCCACTCCA 59.237 50.000 0.00 0.00 0.00 3.86
666 667 2.497675 TCTCTCATAAGTGCCACTCCAC 59.502 50.000 0.00 0.00 35.98 4.02
673 674 2.034879 GTGCCACTCCACCATGTCG 61.035 63.158 0.00 0.00 0.00 4.35
681 682 2.436646 CACCATGTCGCTGTCCCC 60.437 66.667 0.00 0.00 0.00 4.81
693 694 1.814248 GCTGTCCCCTTGTCGTTTTCT 60.814 52.381 0.00 0.00 0.00 2.52
826 829 0.321122 CCAACAGTGTCCTGAGCTCC 60.321 60.000 12.15 0.00 41.50 4.70
961 964 4.819630 GGTTAGTCCATGAAAAGACACACA 59.180 41.667 0.00 0.00 35.38 3.72
979 982 1.959226 ACGCACTTACCTTGCACCG 60.959 57.895 0.00 0.00 40.20 4.94
998 1001 1.302033 CAGCAGCGTATCCCCATCC 60.302 63.158 0.00 0.00 0.00 3.51
1003 1006 1.229400 GCGTATCCCCATCCCCCTA 60.229 63.158 0.00 0.00 0.00 3.53
1015 1018 0.780637 TCCCCCTACCAAATTGTGCA 59.219 50.000 0.00 0.00 0.00 4.57
1185 1223 9.694137 CAAAGACTAGGCTGGTAATAGTATAAC 57.306 37.037 2.53 0.00 30.04 1.89
1356 1394 2.858974 ACCACCACCTCCCCCTTG 60.859 66.667 0.00 0.00 0.00 3.61
1618 1662 1.300465 CATGAGGATCTCGCCACCG 60.300 63.158 0.00 0.00 34.92 4.94
1653 1697 1.064946 CGGCTCCTCGTCATCAGAC 59.935 63.158 0.00 0.00 41.46 3.51
2065 2109 7.042950 TCTATGCATTTCCATTGGTTCATTTG 58.957 34.615 3.54 0.00 0.00 2.32
2110 2154 9.878599 ACTGAAAGAACAATTAAATACTTCACG 57.121 29.630 0.00 0.00 37.43 4.35
2229 2528 8.879227 TGTTTCTCCCCTTTCAAATTAAATCAT 58.121 29.630 0.00 0.00 0.00 2.45
2685 3015 6.162079 TGTTTTGCTGTCAACTCAAATTTCA 58.838 32.000 0.00 0.00 30.89 2.69
2703 3033 8.887717 CAAATTTCACCAAGTTTTCCACATTTA 58.112 29.630 0.00 0.00 0.00 1.40
2778 3108 1.200020 CTTCCTTGTGGATTTGGACGC 59.800 52.381 0.00 0.00 42.81 5.19
2819 3150 4.142359 TGGTGTTTGTTGCGTTTACTCATT 60.142 37.500 0.00 0.00 0.00 2.57
2870 3201 3.951663 AGGAAAGGGATGTTAAGGAACG 58.048 45.455 0.00 0.00 38.51 3.95
2877 3208 3.259902 GGATGTTAAGGAACGTGAGGAC 58.740 50.000 0.00 0.00 38.51 3.85
2962 3293 0.179137 CGGAGAGTAGCACGCAATGA 60.179 55.000 0.00 0.00 0.00 2.57
3018 3349 2.425592 CGAGGGTGGAACTGCACA 59.574 61.111 3.68 0.00 36.74 4.57
3442 3773 2.058595 TCCGGTTAGAGAGCCAGCC 61.059 63.158 0.00 0.00 0.00 4.85
3490 3821 2.100749 TGTGACATAGGGCGTGAGTATG 59.899 50.000 0.00 0.00 0.00 2.39
3493 3824 3.449377 TGACATAGGGCGTGAGTATGAAA 59.551 43.478 0.00 0.00 0.00 2.69
3568 3903 7.169158 TCAACCAGGGAAATCATTTATCAAC 57.831 36.000 0.00 0.00 0.00 3.18
3610 3945 9.787532 CGTTGTGATCCAAATTCAAGTATAAAT 57.212 29.630 0.00 0.00 34.07 1.40
3635 3970 0.109272 TGCTAACTTCTGACGAGCGG 60.109 55.000 0.00 0.00 35.88 5.52
3763 4098 6.434340 GGAAAAGTTGATCAGTTGTAATCCCT 59.566 38.462 0.00 0.00 0.00 4.20
3765 4100 5.762179 AGTTGATCAGTTGTAATCCCTGA 57.238 39.130 0.00 0.00 39.38 3.86
3767 4102 4.123497 TGATCAGTTGTAATCCCTGACG 57.877 45.455 0.00 0.00 38.00 4.35
3780 4115 1.346722 CCCTGACGTTTGTAACCTCCT 59.653 52.381 0.00 0.00 0.00 3.69
3794 4147 2.203640 TCCTCCGATATGGCGCCT 60.204 61.111 29.70 15.76 37.80 5.52
3798 4151 2.087462 CTCCGATATGGCGCCTGTGA 62.087 60.000 29.70 7.47 37.80 3.58
3802 4155 1.195448 CGATATGGCGCCTGTGATTTC 59.805 52.381 29.70 15.43 0.00 2.17
3843 4197 4.690280 GGGTTTTCCACGTAAAATCTCGTA 59.310 41.667 6.73 0.00 42.91 3.43
3847 4201 5.587388 TTCCACGTAAAATCTCGTATCCT 57.413 39.130 0.00 0.00 38.52 3.24
3861 4215 5.084818 TCGTATCCTCTGATTGCTTTTCA 57.915 39.130 0.00 0.00 32.18 2.69
3871 4225 3.255395 TGATTGCTTTTCATTCTTCGCCA 59.745 39.130 0.00 0.00 0.00 5.69
3888 4242 1.273048 GCCATGTTGATTTGCCTGTCA 59.727 47.619 0.00 0.00 0.00 3.58
4033 4464 1.427819 CGGCGTCCCAAATAGTTGC 59.572 57.895 0.00 0.00 33.01 4.17
4044 4475 8.188139 CGTCCCAAATAGTTGCTGTATAAATTT 58.812 33.333 0.00 0.00 33.01 1.82
4091 4887 8.681486 TGATTTGGTATTGTCTATCTTCATGG 57.319 34.615 0.00 0.00 0.00 3.66
4116 4912 7.367285 GTTTTGTATATCTGCTTGGTCAAACA 58.633 34.615 0.00 0.00 0.00 2.83
4180 4976 8.347771 TCTTTGACATTCTGTTCTCAAAATCAG 58.652 33.333 0.00 0.00 0.00 2.90
4287 5085 7.217200 GCTCTAACCACAGGATGATAACATTA 58.783 38.462 0.00 0.00 39.69 1.90
4418 5217 7.842887 AAACTGCAGGGGTAATTAACTAAAA 57.157 32.000 19.93 0.00 0.00 1.52
4523 5322 5.878332 TTACTCAATTGTGTGGCTATGTG 57.122 39.130 20.54 0.00 0.00 3.21
4536 5335 4.455877 GTGGCTATGTGTTTCTAGCTGTTT 59.544 41.667 0.00 0.00 40.17 2.83
4579 5378 5.170021 TGCACATTTTTGCCTTAGCTAATG 58.830 37.500 6.64 5.46 42.25 1.90
4603 5402 4.617530 GCTGTGAAATTGTGCATCTGTCAT 60.618 41.667 0.00 0.00 0.00 3.06
4685 5489 3.011119 ACGCACACAAAAGGACAGTTTA 58.989 40.909 0.00 0.00 0.00 2.01
4727 5531 8.726988 GCTGTGTAATTAACTTGATCCACTTAA 58.273 33.333 0.00 0.00 0.00 1.85
4813 5620 6.142798 CGATAGAATATTTTTGGTGCATGCAC 59.857 38.462 37.29 37.29 42.22 4.57
4866 5673 3.326578 TGCCTAGCCCGGAAGCAA 61.327 61.111 0.73 0.00 34.23 3.91
5085 5892 1.107114 ACGTCGAGCAGATCAATCCT 58.893 50.000 0.00 0.00 0.00 3.24
5234 6041 7.009179 TGGAGACTGATAATAATCCCATGAC 57.991 40.000 0.00 0.00 0.00 3.06
5336 6143 2.738213 ATCAATCGATCAGGGCGGCC 62.738 60.000 22.67 22.67 0.00 6.13
5393 6200 6.044046 TCATACATATCTTAAAACGCACGGT 58.956 36.000 0.00 0.00 0.00 4.83
5400 6207 3.740513 AAACGCACGGTTTCTCCC 58.259 55.556 0.00 0.00 45.60 4.30
5681 6490 7.959651 GCAAAATGAGTGAATCTACACACTAAG 59.040 37.037 0.00 0.00 45.54 2.18
5733 6542 4.807304 TGTATCGAATTCGCTAAAAGGTCC 59.193 41.667 22.90 4.86 39.60 4.46
5766 6575 8.602472 AGAATCAGAAGGAGTACTATTCAAGT 57.398 34.615 17.95 8.40 42.62 3.16
5842 6651 7.360361 CCAACTAACACCAAGTCACTTATTTC 58.640 38.462 0.00 0.00 0.00 2.17
5850 6659 3.611766 AGTCACTTATTTCGGGACTGG 57.388 47.619 0.00 0.00 37.43 4.00
5947 6756 5.941647 CCTGTGTGCATATATTCATGATCCA 59.058 40.000 0.00 0.00 0.00 3.41
5965 6774 6.003326 TGATCCAAAGTGAAATGCTTGAGTA 58.997 36.000 0.00 0.00 0.00 2.59
6297 7118 2.172679 TGGTACATCTTAGCACGGTGA 58.827 47.619 13.29 0.00 0.00 4.02
6441 7264 3.931907 ATGTAAGCTAGCCACCATTGA 57.068 42.857 12.13 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
100 101 9.771534 CCAAAATACCTTTTCCATAACTCAAAA 57.228 29.630 0.00 0.00 32.21 2.44
101 102 7.875554 GCCAAAATACCTTTTCCATAACTCAAA 59.124 33.333 0.00 0.00 32.21 2.69
102 103 7.234577 AGCCAAAATACCTTTTCCATAACTCAA 59.765 33.333 0.00 0.00 32.21 3.02
103 104 6.723977 AGCCAAAATACCTTTTCCATAACTCA 59.276 34.615 0.00 0.00 32.21 3.41
104 105 7.035612 CAGCCAAAATACCTTTTCCATAACTC 58.964 38.462 0.00 0.00 32.21 3.01
105 106 6.723977 TCAGCCAAAATACCTTTTCCATAACT 59.276 34.615 0.00 0.00 32.21 2.24
106 107 6.930731 TCAGCCAAAATACCTTTTCCATAAC 58.069 36.000 0.00 0.00 32.21 1.89
107 108 7.732222 ATCAGCCAAAATACCTTTTCCATAA 57.268 32.000 0.00 0.00 32.21 1.90
108 109 8.830915 TTATCAGCCAAAATACCTTTTCCATA 57.169 30.769 0.00 0.00 32.21 2.74
109 110 7.732222 TTATCAGCCAAAATACCTTTTCCAT 57.268 32.000 0.00 0.00 32.21 3.41
110 111 7.546250 TTTATCAGCCAAAATACCTTTTCCA 57.454 32.000 0.00 0.00 32.21 3.53
111 112 8.040727 ACATTTATCAGCCAAAATACCTTTTCC 58.959 33.333 0.00 0.00 32.21 3.13
120 121 8.971073 GCCCTATATACATTTATCAGCCAAAAT 58.029 33.333 0.00 0.00 0.00 1.82
121 122 8.170061 AGCCCTATATACATTTATCAGCCAAAA 58.830 33.333 0.00 0.00 0.00 2.44
122 123 7.698912 AGCCCTATATACATTTATCAGCCAAA 58.301 34.615 0.00 0.00 0.00 3.28
123 124 7.037658 TGAGCCCTATATACATTTATCAGCCAA 60.038 37.037 0.00 0.00 0.00 4.52
124 125 6.443527 TGAGCCCTATATACATTTATCAGCCA 59.556 38.462 0.00 0.00 0.00 4.75
125 126 6.889198 TGAGCCCTATATACATTTATCAGCC 58.111 40.000 0.00 0.00 0.00 4.85
126 127 8.834465 CATTGAGCCCTATATACATTTATCAGC 58.166 37.037 0.00 0.00 0.00 4.26
127 128 9.334947 CCATTGAGCCCTATATACATTTATCAG 57.665 37.037 0.00 0.00 0.00 2.90
128 129 9.056799 TCCATTGAGCCCTATATACATTTATCA 57.943 33.333 0.00 0.00 0.00 2.15
129 130 9.553064 CTCCATTGAGCCCTATATACATTTATC 57.447 37.037 0.00 0.00 0.00 1.75
146 147 1.227497 GAGGCCGAGCTCCATTGAG 60.227 63.158 8.47 0.00 41.84 3.02
147 148 1.687146 AGAGGCCGAGCTCCATTGA 60.687 57.895 8.47 0.00 0.00 2.57
148 149 1.523258 CAGAGGCCGAGCTCCATTG 60.523 63.158 8.47 0.00 0.00 2.82
149 150 2.906458 CAGAGGCCGAGCTCCATT 59.094 61.111 8.47 0.00 0.00 3.16
150 151 3.859414 GCAGAGGCCGAGCTCCAT 61.859 66.667 8.47 0.00 0.00 3.41
152 153 4.527583 CTGCAGAGGCCGAGCTCC 62.528 72.222 8.42 0.00 40.13 4.70
160 161 1.583477 GAAAAGTGGCTGCAGAGGC 59.417 57.895 20.43 5.00 45.19 4.70
161 162 0.603707 TCGAAAAGTGGCTGCAGAGG 60.604 55.000 20.43 0.00 0.00 3.69
162 163 1.446907 ATCGAAAAGTGGCTGCAGAG 58.553 50.000 20.43 0.00 0.00 3.35
163 164 2.760634 TATCGAAAAGTGGCTGCAGA 57.239 45.000 20.43 0.00 0.00 4.26
164 165 4.361451 AAATATCGAAAAGTGGCTGCAG 57.639 40.909 10.11 10.11 0.00 4.41
165 166 5.888691 TTAAATATCGAAAAGTGGCTGCA 57.111 34.783 0.50 0.00 0.00 4.41
166 167 6.090129 TGTTTAAATATCGAAAAGTGGCTGC 58.910 36.000 0.00 0.00 0.00 5.25
167 168 8.687824 AATGTTTAAATATCGAAAAGTGGCTG 57.312 30.769 0.00 0.00 0.00 4.85
168 169 9.705290 AAAATGTTTAAATATCGAAAAGTGGCT 57.295 25.926 0.00 0.00 0.00 4.75
169 170 9.739786 CAAAATGTTTAAATATCGAAAAGTGGC 57.260 29.630 0.00 0.00 0.00 5.01
184 185 9.760660 CCAAAACACGAATTTCAAAATGTTTAA 57.239 25.926 13.78 0.00 0.00 1.52
185 186 9.151471 TCCAAAACACGAATTTCAAAATGTTTA 57.849 25.926 13.78 2.80 0.00 2.01
186 187 8.034058 TCCAAAACACGAATTTCAAAATGTTT 57.966 26.923 10.13 10.13 0.00 2.83
187 188 7.602517 TCCAAAACACGAATTTCAAAATGTT 57.397 28.000 0.00 0.00 0.00 2.71
188 189 7.333174 ACTTCCAAAACACGAATTTCAAAATGT 59.667 29.630 0.00 0.00 0.00 2.71
189 190 7.683746 ACTTCCAAAACACGAATTTCAAAATG 58.316 30.769 0.00 0.00 0.00 2.32
190 191 7.841915 ACTTCCAAAACACGAATTTCAAAAT 57.158 28.000 0.00 0.00 0.00 1.82
191 192 7.659652 AACTTCCAAAACACGAATTTCAAAA 57.340 28.000 0.00 0.00 0.00 2.44
192 193 7.385205 TGAAACTTCCAAAACACGAATTTCAAA 59.615 29.630 0.00 0.00 30.95 2.69
193 194 6.868864 TGAAACTTCCAAAACACGAATTTCAA 59.131 30.769 0.00 0.00 30.95 2.69
194 195 6.390721 TGAAACTTCCAAAACACGAATTTCA 58.609 32.000 0.00 0.00 31.15 2.69
195 196 6.879188 TGAAACTTCCAAAACACGAATTTC 57.121 33.333 0.00 0.00 0.00 2.17
196 197 7.659652 TTTGAAACTTCCAAAACACGAATTT 57.340 28.000 0.00 0.00 31.36 1.82
197 198 7.659652 TTTTGAAACTTCCAAAACACGAATT 57.340 28.000 0.00 0.00 38.23 2.17
198 199 7.659652 TTTTTGAAACTTCCAAAACACGAAT 57.340 28.000 0.00 0.00 41.48 3.34
232 233 9.349713 GAATGTGTATATGTATCCCCTGAAAAA 57.650 33.333 0.00 0.00 0.00 1.94
233 234 7.942341 GGAATGTGTATATGTATCCCCTGAAAA 59.058 37.037 0.00 0.00 0.00 2.29
234 235 7.458397 GGAATGTGTATATGTATCCCCTGAAA 58.542 38.462 0.00 0.00 0.00 2.69
235 236 6.295632 CGGAATGTGTATATGTATCCCCTGAA 60.296 42.308 0.00 0.00 0.00 3.02
236 237 5.186992 CGGAATGTGTATATGTATCCCCTGA 59.813 44.000 0.00 0.00 0.00 3.86
237 238 5.186992 TCGGAATGTGTATATGTATCCCCTG 59.813 44.000 0.00 0.00 0.00 4.45
238 239 5.338632 TCGGAATGTGTATATGTATCCCCT 58.661 41.667 0.00 0.00 0.00 4.79
239 240 5.670792 TCGGAATGTGTATATGTATCCCC 57.329 43.478 0.00 0.00 0.00 4.81
240 241 7.709613 GGTATTCGGAATGTGTATATGTATCCC 59.290 40.741 13.37 0.00 0.00 3.85
241 242 7.709613 GGGTATTCGGAATGTGTATATGTATCC 59.290 40.741 13.37 0.00 0.00 2.59
242 243 7.434307 CGGGTATTCGGAATGTGTATATGTATC 59.566 40.741 13.37 0.00 0.00 2.24
243 244 7.093640 ACGGGTATTCGGAATGTGTATATGTAT 60.094 37.037 13.37 0.00 0.00 2.29
244 245 6.209192 ACGGGTATTCGGAATGTGTATATGTA 59.791 38.462 13.37 0.00 0.00 2.29
245 246 5.011329 ACGGGTATTCGGAATGTGTATATGT 59.989 40.000 13.37 0.00 0.00 2.29
246 247 5.347635 CACGGGTATTCGGAATGTGTATATG 59.652 44.000 13.37 0.34 0.00 1.78
247 248 5.475719 CACGGGTATTCGGAATGTGTATAT 58.524 41.667 13.37 0.00 0.00 0.86
248 249 4.262121 CCACGGGTATTCGGAATGTGTATA 60.262 45.833 13.37 0.00 0.00 1.47
249 250 3.493699 CCACGGGTATTCGGAATGTGTAT 60.494 47.826 13.37 0.00 0.00 2.29
250 251 2.159071 CCACGGGTATTCGGAATGTGTA 60.159 50.000 13.37 0.00 0.00 2.90
251 252 1.406341 CCACGGGTATTCGGAATGTGT 60.406 52.381 13.37 3.79 0.00 3.72
252 253 1.295792 CCACGGGTATTCGGAATGTG 58.704 55.000 13.37 11.64 0.00 3.21
253 254 0.463116 GCCACGGGTATTCGGAATGT 60.463 55.000 13.37 0.00 0.00 2.71
254 255 0.462937 TGCCACGGGTATTCGGAATG 60.463 55.000 13.37 0.00 0.00 2.67
255 256 0.253610 TTGCCACGGGTATTCGGAAT 59.746 50.000 8.49 8.49 0.00 3.01
256 257 0.391927 CTTGCCACGGGTATTCGGAA 60.392 55.000 0.00 0.00 0.00 4.30
257 258 1.219664 CTTGCCACGGGTATTCGGA 59.780 57.895 0.00 0.00 0.00 4.55
258 259 0.675522 AACTTGCCACGGGTATTCGG 60.676 55.000 0.00 0.00 0.00 4.30
259 260 1.161843 AAACTTGCCACGGGTATTCG 58.838 50.000 0.00 0.00 0.00 3.34
260 261 2.352323 CCAAAACTTGCCACGGGTATTC 60.352 50.000 0.00 0.00 0.00 1.75
261 262 1.616374 CCAAAACTTGCCACGGGTATT 59.384 47.619 0.00 0.00 0.00 1.89
262 263 1.253100 CCAAAACTTGCCACGGGTAT 58.747 50.000 0.00 0.00 0.00 2.73
263 264 0.106619 ACCAAAACTTGCCACGGGTA 60.107 50.000 0.00 0.00 0.00 3.69
264 265 0.106619 TACCAAAACTTGCCACGGGT 60.107 50.000 0.00 0.00 0.00 5.28
265 266 0.596082 CTACCAAAACTTGCCACGGG 59.404 55.000 0.00 0.00 0.00 5.28
266 267 1.600023 TCTACCAAAACTTGCCACGG 58.400 50.000 0.00 0.00 0.00 4.94
267 268 3.701532 TTTCTACCAAAACTTGCCACG 57.298 42.857 0.00 0.00 0.00 4.94
268 269 5.453567 AGATTTCTACCAAAACTTGCCAC 57.546 39.130 0.00 0.00 0.00 5.01
269 270 4.215399 CGAGATTTCTACCAAAACTTGCCA 59.785 41.667 0.00 0.00 0.00 4.92
270 271 4.723248 CGAGATTTCTACCAAAACTTGCC 58.277 43.478 0.00 0.00 0.00 4.52
271 272 4.083271 AGCGAGATTTCTACCAAAACTTGC 60.083 41.667 7.99 7.99 32.60 4.01
272 273 5.613358 AGCGAGATTTCTACCAAAACTTG 57.387 39.130 0.00 0.00 0.00 3.16
273 274 6.039382 ACAAAGCGAGATTTCTACCAAAACTT 59.961 34.615 0.00 0.00 0.00 2.66
274 275 5.531287 ACAAAGCGAGATTTCTACCAAAACT 59.469 36.000 0.00 0.00 0.00 2.66
275 276 5.758924 ACAAAGCGAGATTTCTACCAAAAC 58.241 37.500 0.00 0.00 0.00 2.43
276 277 6.385649 AACAAAGCGAGATTTCTACCAAAA 57.614 33.333 0.00 0.00 0.00 2.44
277 278 6.385649 AAACAAAGCGAGATTTCTACCAAA 57.614 33.333 0.00 0.00 0.00 3.28
278 279 6.205784 CAAAACAAAGCGAGATTTCTACCAA 58.794 36.000 0.00 0.00 0.00 3.67
279 280 5.278266 CCAAAACAAAGCGAGATTTCTACCA 60.278 40.000 0.00 0.00 0.00 3.25
280 281 5.154222 CCAAAACAAAGCGAGATTTCTACC 58.846 41.667 0.00 0.00 0.00 3.18
281 282 5.154222 CCCAAAACAAAGCGAGATTTCTAC 58.846 41.667 0.00 0.00 0.00 2.59
282 283 4.320935 GCCCAAAACAAAGCGAGATTTCTA 60.321 41.667 0.00 0.00 0.00 2.10
283 284 3.552890 GCCCAAAACAAAGCGAGATTTCT 60.553 43.478 0.00 0.00 0.00 2.52
284 285 2.731451 GCCCAAAACAAAGCGAGATTTC 59.269 45.455 0.00 0.00 0.00 2.17
285 286 2.365293 AGCCCAAAACAAAGCGAGATTT 59.635 40.909 0.00 0.00 0.00 2.17
286 287 1.963515 AGCCCAAAACAAAGCGAGATT 59.036 42.857 0.00 0.00 0.00 2.40
287 288 1.620822 AGCCCAAAACAAAGCGAGAT 58.379 45.000 0.00 0.00 0.00 2.75
288 289 2.264005 TAGCCCAAAACAAAGCGAGA 57.736 45.000 0.00 0.00 0.00 4.04
289 290 3.938963 TCTATAGCCCAAAACAAAGCGAG 59.061 43.478 0.00 0.00 0.00 5.03
290 291 3.945346 TCTATAGCCCAAAACAAAGCGA 58.055 40.909 0.00 0.00 0.00 4.93
291 292 4.695217 TTCTATAGCCCAAAACAAAGCG 57.305 40.909 0.00 0.00 0.00 4.68
327 328 9.066892 GCACCCATTTTCTCTTATATATTGTCA 57.933 33.333 0.00 0.00 0.00 3.58
328 329 8.515414 GGCACCCATTTTCTCTTATATATTGTC 58.485 37.037 0.00 0.00 0.00 3.18
329 330 8.004215 TGGCACCCATTTTCTCTTATATATTGT 58.996 33.333 0.00 0.00 0.00 2.71
330 331 8.408043 TGGCACCCATTTTCTCTTATATATTG 57.592 34.615 0.00 0.00 0.00 1.90
347 348 2.079170 TCTGACAAAAATGGCACCCA 57.921 45.000 0.00 0.00 38.19 4.51
348 349 3.467374 TTTCTGACAAAAATGGCACCC 57.533 42.857 0.00 0.00 0.00 4.61
349 350 5.759763 AGAAATTTCTGACAAAAATGGCACC 59.240 36.000 19.86 0.00 35.89 5.01
350 351 6.703165 AGAGAAATTTCTGACAAAAATGGCAC 59.297 34.615 25.12 5.64 37.73 5.01
351 352 6.819284 AGAGAAATTTCTGACAAAAATGGCA 58.181 32.000 25.12 0.00 37.73 4.92
352 353 7.719778 AAGAGAAATTTCTGACAAAAATGGC 57.280 32.000 25.12 6.25 37.73 4.40
399 400 9.908152 CCGGTAAAAATCTGAAAAAGAAATACT 57.092 29.630 0.00 0.00 38.79 2.12
400 401 9.135843 CCCGGTAAAAATCTGAAAAAGAAATAC 57.864 33.333 0.00 0.00 38.79 1.89
401 402 7.815549 GCCCGGTAAAAATCTGAAAAAGAAATA 59.184 33.333 0.00 0.00 38.79 1.40
402 403 6.649141 GCCCGGTAAAAATCTGAAAAAGAAAT 59.351 34.615 0.00 0.00 38.79 2.17
403 404 5.986741 GCCCGGTAAAAATCTGAAAAAGAAA 59.013 36.000 0.00 0.00 38.79 2.52
404 405 5.510009 GGCCCGGTAAAAATCTGAAAAAGAA 60.510 40.000 0.00 0.00 38.79 2.52
405 406 4.021807 GGCCCGGTAAAAATCTGAAAAAGA 60.022 41.667 0.00 0.00 39.94 2.52
406 407 4.021456 AGGCCCGGTAAAAATCTGAAAAAG 60.021 41.667 0.00 0.00 0.00 2.27
407 408 3.898741 AGGCCCGGTAAAAATCTGAAAAA 59.101 39.130 0.00 0.00 0.00 1.94
408 409 3.502356 AGGCCCGGTAAAAATCTGAAAA 58.498 40.909 0.00 0.00 0.00 2.29
409 410 3.163616 AGGCCCGGTAAAAATCTGAAA 57.836 42.857 0.00 0.00 0.00 2.69
410 411 2.823154 CAAGGCCCGGTAAAAATCTGAA 59.177 45.455 0.00 0.00 0.00 3.02
411 412 2.442413 CAAGGCCCGGTAAAAATCTGA 58.558 47.619 0.00 0.00 0.00 3.27
412 413 1.476488 CCAAGGCCCGGTAAAAATCTG 59.524 52.381 0.00 0.00 0.00 2.90
413 414 1.618616 CCCAAGGCCCGGTAAAAATCT 60.619 52.381 0.00 0.00 0.00 2.40
414 415 0.821517 CCCAAGGCCCGGTAAAAATC 59.178 55.000 0.00 0.00 0.00 2.17
415 416 0.410270 TCCCAAGGCCCGGTAAAAAT 59.590 50.000 0.00 0.00 0.00 1.82
416 417 0.187851 TTCCCAAGGCCCGGTAAAAA 59.812 50.000 0.00 0.00 0.00 1.94
417 418 0.410270 ATTCCCAAGGCCCGGTAAAA 59.590 50.000 0.00 0.00 0.00 1.52
418 419 0.323908 CATTCCCAAGGCCCGGTAAA 60.324 55.000 0.00 0.00 0.00 2.01
419 420 1.304952 CATTCCCAAGGCCCGGTAA 59.695 57.895 0.00 0.00 0.00 2.85
420 421 1.926489 ACATTCCCAAGGCCCGGTA 60.926 57.895 0.00 0.00 0.00 4.02
421 422 3.264845 ACATTCCCAAGGCCCGGT 61.265 61.111 0.00 0.00 0.00 5.28
422 423 2.755469 CACATTCCCAAGGCCCGG 60.755 66.667 0.00 0.00 0.00 5.73
423 424 2.035626 ACACATTCCCAAGGCCCG 59.964 61.111 0.00 0.00 0.00 6.13
424 425 0.623723 TAGACACATTCCCAAGGCCC 59.376 55.000 0.00 0.00 0.00 5.80
425 426 2.301346 CATAGACACATTCCCAAGGCC 58.699 52.381 0.00 0.00 0.00 5.19
426 427 1.678101 GCATAGACACATTCCCAAGGC 59.322 52.381 0.00 0.00 0.00 4.35
427 428 3.003394 TGCATAGACACATTCCCAAGG 57.997 47.619 0.00 0.00 0.00 3.61
428 429 5.179045 GAATGCATAGACACATTCCCAAG 57.821 43.478 0.00 0.00 44.09 3.61
433 434 9.177304 CAAATATGTGAATGCATAGACACATTC 57.823 33.333 31.80 15.42 46.98 2.67
434 435 8.905850 TCAAATATGTGAATGCATAGACACATT 58.094 29.630 31.80 21.67 46.98 2.71
436 437 7.862512 TCAAATATGTGAATGCATAGACACA 57.137 32.000 25.19 25.19 45.06 3.72
437 438 9.740239 AAATCAAATATGTGAATGCATAGACAC 57.260 29.630 18.36 18.36 35.16 3.67
533 534 4.705337 AACACACTTCGGTTGCTAAAAA 57.295 36.364 0.00 0.00 0.00 1.94
534 535 4.705337 AAACACACTTCGGTTGCTAAAA 57.295 36.364 0.00 0.00 0.00 1.52
535 536 4.705337 AAAACACACTTCGGTTGCTAAA 57.295 36.364 0.00 0.00 0.00 1.85
536 537 4.705337 AAAAACACACTTCGGTTGCTAA 57.295 36.364 0.00 0.00 0.00 3.09
558 559 9.874205 CAGGGCTCTTGATATTTGAAATTTTTA 57.126 29.630 0.00 0.00 0.00 1.52
559 560 7.825761 CCAGGGCTCTTGATATTTGAAATTTTT 59.174 33.333 0.00 0.00 0.00 1.94
560 561 7.180766 TCCAGGGCTCTTGATATTTGAAATTTT 59.819 33.333 0.00 0.00 0.00 1.82
561 562 6.669154 TCCAGGGCTCTTGATATTTGAAATTT 59.331 34.615 0.00 0.00 0.00 1.82
562 563 6.197168 TCCAGGGCTCTTGATATTTGAAATT 58.803 36.000 0.00 0.00 0.00 1.82
563 564 5.769835 TCCAGGGCTCTTGATATTTGAAAT 58.230 37.500 0.00 0.00 0.00 2.17
564 565 5.191727 TCCAGGGCTCTTGATATTTGAAA 57.808 39.130 0.00 0.00 0.00 2.69
565 566 4.785301 CTCCAGGGCTCTTGATATTTGAA 58.215 43.478 0.00 0.00 0.00 2.69
566 567 3.434167 GCTCCAGGGCTCTTGATATTTGA 60.434 47.826 0.00 0.00 0.00 2.69
567 568 2.883386 GCTCCAGGGCTCTTGATATTTG 59.117 50.000 0.00 0.00 0.00 2.32
568 569 2.158549 GGCTCCAGGGCTCTTGATATTT 60.159 50.000 0.00 0.00 37.53 1.40
569 570 1.423161 GGCTCCAGGGCTCTTGATATT 59.577 52.381 0.00 0.00 37.53 1.28
570 571 1.063183 GGCTCCAGGGCTCTTGATAT 58.937 55.000 0.00 0.00 37.53 1.63
571 572 1.056700 GGGCTCCAGGGCTCTTGATA 61.057 60.000 0.00 0.00 40.65 2.15
572 573 2.381941 GGGCTCCAGGGCTCTTGAT 61.382 63.158 0.00 0.00 40.65 2.57
573 574 3.011517 GGGCTCCAGGGCTCTTGA 61.012 66.667 0.00 0.00 40.65 3.02
574 575 4.479993 CGGGCTCCAGGGCTCTTG 62.480 72.222 0.00 0.00 40.65 3.02
581 582 3.854669 CAGCTACCGGGCTCCAGG 61.855 72.222 6.32 3.47 41.00 4.45
582 583 4.537433 GCAGCTACCGGGCTCCAG 62.537 72.222 6.32 0.00 41.00 3.86
584 585 4.096003 TTGCAGCTACCGGGCTCC 62.096 66.667 6.32 0.00 41.00 4.70
585 586 2.512515 CTTGCAGCTACCGGGCTC 60.513 66.667 6.32 1.03 41.00 4.70
586 587 4.785453 GCTTGCAGCTACCGGGCT 62.785 66.667 6.32 1.97 44.10 5.19
588 589 3.127533 GTGCTTGCAGCTACCGGG 61.128 66.667 6.32 0.00 42.97 5.73
589 590 1.237285 AAAGTGCTTGCAGCTACCGG 61.237 55.000 0.00 0.00 42.97 5.28
590 591 0.593128 AAAAGTGCTTGCAGCTACCG 59.407 50.000 9.12 0.00 42.97 4.02
591 592 1.400242 CGAAAAGTGCTTGCAGCTACC 60.400 52.381 9.12 0.00 42.97 3.18
592 593 1.531149 TCGAAAAGTGCTTGCAGCTAC 59.469 47.619 9.12 6.29 42.97 3.58
593 594 1.800586 CTCGAAAAGTGCTTGCAGCTA 59.199 47.619 9.12 0.00 42.97 3.32
594 595 0.590195 CTCGAAAAGTGCTTGCAGCT 59.410 50.000 9.12 0.00 42.97 4.24
595 596 1.000736 GCTCGAAAAGTGCTTGCAGC 61.001 55.000 0.00 1.70 42.82 5.25
596 597 0.590195 AGCTCGAAAAGTGCTTGCAG 59.410 50.000 0.00 0.00 46.35 4.41
597 598 2.706636 AGCTCGAAAAGTGCTTGCA 58.293 47.368 0.00 0.00 46.35 4.08
602 603 0.030638 TTGGCAAGCTCGAAAAGTGC 59.969 50.000 0.00 0.00 39.48 4.40
603 604 2.042104 CTTGGCAAGCTCGAAAAGTG 57.958 50.000 15.25 0.00 0.00 3.16
614 615 0.908198 AGAGAGTAGGGCTTGGCAAG 59.092 55.000 22.75 22.75 0.00 4.01
615 616 0.905357 GAGAGAGTAGGGCTTGGCAA 59.095 55.000 0.00 0.00 0.00 4.52
616 617 0.041833 AGAGAGAGTAGGGCTTGGCA 59.958 55.000 0.00 0.00 0.00 4.92
617 618 0.750249 GAGAGAGAGTAGGGCTTGGC 59.250 60.000 0.00 0.00 0.00 4.52
618 619 2.091885 AGAGAGAGAGAGTAGGGCTTGG 60.092 54.545 0.00 0.00 0.00 3.61
619 620 3.117888 AGAGAGAGAGAGAGTAGGGCTTG 60.118 52.174 0.00 0.00 0.00 4.01
620 621 3.123273 AGAGAGAGAGAGAGTAGGGCTT 58.877 50.000 0.00 0.00 0.00 4.35
621 622 2.706190 GAGAGAGAGAGAGAGTAGGGCT 59.294 54.545 0.00 0.00 0.00 5.19
622 623 2.706190 AGAGAGAGAGAGAGAGTAGGGC 59.294 54.545 0.00 0.00 0.00 5.19
623 624 4.227197 AGAGAGAGAGAGAGAGAGTAGGG 58.773 52.174 0.00 0.00 0.00 3.53
624 625 5.144100 AGAGAGAGAGAGAGAGAGAGTAGG 58.856 50.000 0.00 0.00 0.00 3.18
625 626 6.068010 AGAGAGAGAGAGAGAGAGAGAGTAG 58.932 48.000 0.00 0.00 0.00 2.57
626 627 6.019656 AGAGAGAGAGAGAGAGAGAGAGTA 57.980 45.833 0.00 0.00 0.00 2.59
627 628 4.877773 AGAGAGAGAGAGAGAGAGAGAGT 58.122 47.826 0.00 0.00 0.00 3.24
665 666 2.224159 AAGGGGACAGCGACATGGT 61.224 57.895 0.00 0.00 0.00 3.55
666 667 1.746615 CAAGGGGACAGCGACATGG 60.747 63.158 0.00 0.00 0.00 3.66
673 674 0.591659 GAAAACGACAAGGGGACAGC 59.408 55.000 0.00 0.00 0.00 4.40
961 964 1.959226 CGGTGCAAGGTAAGTGCGT 60.959 57.895 0.00 0.00 45.27 5.24
993 996 2.387757 CACAATTTGGTAGGGGGATGG 58.612 52.381 0.78 0.00 0.00 3.51
994 997 1.756538 GCACAATTTGGTAGGGGGATG 59.243 52.381 0.78 0.00 0.00 3.51
998 1001 0.894835 GGTGCACAATTTGGTAGGGG 59.105 55.000 20.43 0.00 0.00 4.79
1003 1006 2.433604 TGACAATGGTGCACAATTTGGT 59.566 40.909 17.11 12.72 0.00 3.67
1015 1018 2.834113 AGGTAGCTAGGTGACAATGGT 58.166 47.619 4.27 0.00 0.00 3.55
1125 1163 2.394563 CCACACACACACACACGCA 61.395 57.895 0.00 0.00 0.00 5.24
1126 1164 2.403186 CCACACACACACACACGC 59.597 61.111 0.00 0.00 0.00 5.34
1127 1165 0.808060 TAGCCACACACACACACACG 60.808 55.000 0.00 0.00 0.00 4.49
1128 1166 1.330521 CTTAGCCACACACACACACAC 59.669 52.381 0.00 0.00 0.00 3.82
1129 1167 1.662517 CTTAGCCACACACACACACA 58.337 50.000 0.00 0.00 0.00 3.72
1130 1168 0.307760 GCTTAGCCACACACACACAC 59.692 55.000 0.00 0.00 0.00 3.82
1185 1223 4.332268 GCTCTCTGCTGTATCTTTTCTTGG 59.668 45.833 0.00 0.00 38.95 3.61
1365 1403 0.318784 GTAGGGGATCATGACGCGAC 60.319 60.000 15.93 7.62 0.00 5.19
1477 1521 4.547367 GCCGCCGCCAGAAGGTAT 62.547 66.667 0.00 0.00 37.19 2.73
1498 1542 4.624364 TGCGGCAGCCCATATCCG 62.624 66.667 5.63 0.00 44.33 4.18
1644 1688 1.478510 ACCTGGTGATCGTCTGATGAC 59.521 52.381 0.00 0.00 37.92 3.06
1653 1697 8.888579 ATTAAGAGTTAATAACCTGGTGATCG 57.111 34.615 0.00 0.00 34.22 3.69
2031 2075 8.636213 CCAATGGAAATGCATAGAAAGAACTAT 58.364 33.333 0.00 0.00 33.95 2.12
2065 2109 6.974932 TCAGTCTAGTGAAAAATGATGCTC 57.025 37.500 0.00 0.00 0.00 4.26
2085 2129 9.878599 ACGTGAAGTATTTAATTGTTCTTTCAG 57.121 29.630 0.00 0.00 0.00 3.02
2110 2154 7.747799 CAGACACAGAATGACAATTTCACATAC 59.252 37.037 0.00 0.00 39.69 2.39
2112 2156 6.675026 CAGACACAGAATGACAATTTCACAT 58.325 36.000 0.00 0.00 39.69 3.21
2168 2214 5.319140 TGCATCAAATGTCAGGAATTCAG 57.681 39.130 7.93 0.00 0.00 3.02
2229 2528 7.707624 ACATCATGAAAGGATTAAAGAAGCA 57.292 32.000 0.00 0.00 33.46 3.91
2239 2538 7.356680 TCCTCCAATAAACATCATGAAAGGAT 58.643 34.615 0.00 0.00 38.24 3.24
2555 2854 8.918202 ACCAAACTAAGACATCAGATGTTAAA 57.082 30.769 17.43 5.20 45.03 1.52
2685 3015 6.039941 TGTCGATTAAATGTGGAAAACTTGGT 59.960 34.615 0.00 0.00 0.00 3.67
2703 3033 9.520204 GTCAAATCATAAATTTCCATGTCGATT 57.480 29.630 0.00 0.00 0.00 3.34
2819 3150 5.182190 TGAAACACTGCAAGAAACACTAACA 59.818 36.000 0.00 0.00 37.43 2.41
2870 3201 2.106683 CGGCCCAAATCGTCCTCAC 61.107 63.158 0.00 0.00 0.00 3.51
2877 3208 2.332312 TATCCCACCGGCCCAAATCG 62.332 60.000 0.00 0.00 0.00 3.34
2962 3293 1.004745 CAAGGTGCCAAGAGGGTGTAT 59.995 52.381 0.00 0.00 39.65 2.29
3340 3671 0.548197 CCCCAACCCTACCCACTACA 60.548 60.000 0.00 0.00 0.00 2.74
3341 3672 0.548439 ACCCCAACCCTACCCACTAC 60.548 60.000 0.00 0.00 0.00 2.73
3342 3673 0.196631 AACCCCAACCCTACCCACTA 59.803 55.000 0.00 0.00 0.00 2.74
3343 3674 0.196631 TAACCCCAACCCTACCCACT 59.803 55.000 0.00 0.00 0.00 4.00
3344 3675 0.329261 GTAACCCCAACCCTACCCAC 59.671 60.000 0.00 0.00 0.00 4.61
3345 3676 0.104037 TGTAACCCCAACCCTACCCA 60.104 55.000 0.00 0.00 0.00 4.51
3346 3677 1.074766 TTGTAACCCCAACCCTACCC 58.925 55.000 0.00 0.00 0.00 3.69
3347 3678 1.424684 TGTTGTAACCCCAACCCTACC 59.575 52.381 0.00 0.00 43.22 3.18
3348 3679 2.955342 TGTTGTAACCCCAACCCTAC 57.045 50.000 0.00 0.00 43.22 3.18
3349 3680 3.054576 TCTTGTTGTAACCCCAACCCTA 58.945 45.455 0.00 0.00 43.22 3.53
3350 3681 1.854280 TCTTGTTGTAACCCCAACCCT 59.146 47.619 0.00 0.00 43.22 4.34
3442 3773 2.094494 ACACACTCTATTGCTCCGTCTG 60.094 50.000 0.00 0.00 0.00 3.51
3490 3821 4.501400 CCACCTCCCACAAAAGTCAATTTC 60.501 45.833 0.00 0.00 0.00 2.17
3493 3824 2.597455 CCACCTCCCACAAAAGTCAAT 58.403 47.619 0.00 0.00 0.00 2.57
3568 3903 6.489127 TCACAACGGAACAACCTTATATTG 57.511 37.500 0.00 0.00 36.31 1.90
3576 3911 1.600023 TGGATCACAACGGAACAACC 58.400 50.000 0.00 0.00 0.00 3.77
3583 3918 4.503741 ACTTGAATTTGGATCACAACGG 57.496 40.909 0.00 0.00 39.19 4.44
3584 3919 9.787532 ATTTATACTTGAATTTGGATCACAACG 57.212 29.630 0.00 0.00 39.19 4.10
3610 3945 5.103000 GCTCGTCAGAAGTTAGCATTTCTA 58.897 41.667 0.00 0.00 32.62 2.10
3616 3951 0.109272 CCGCTCGTCAGAAGTTAGCA 60.109 55.000 0.00 0.00 32.69 3.49
3652 3987 3.003173 AGCCCAAGCCTACTCGCA 61.003 61.111 0.00 0.00 41.25 5.10
3654 3989 0.460987 CTTCAGCCCAAGCCTACTCG 60.461 60.000 0.00 0.00 41.25 4.18
3655 3990 0.746204 GCTTCAGCCCAAGCCTACTC 60.746 60.000 6.02 0.00 42.68 2.59
3656 3991 1.301293 GCTTCAGCCCAAGCCTACT 59.699 57.895 6.02 0.00 42.68 2.57
3741 4076 6.431234 GTCAGGGATTACAACTGATCAACTTT 59.569 38.462 0.00 0.00 42.54 2.66
3763 4098 1.000060 CGGAGGAGGTTACAAACGTCA 60.000 52.381 12.81 0.00 45.48 4.35
3765 4100 1.331214 TCGGAGGAGGTTACAAACGT 58.669 50.000 0.00 0.00 0.00 3.99
3767 4102 4.377897 CCATATCGGAGGAGGTTACAAAC 58.622 47.826 0.00 0.00 36.56 2.93
3780 4115 1.471829 ATCACAGGCGCCATATCGGA 61.472 55.000 31.54 16.82 36.56 4.55
3843 4197 6.183360 CGAAGAATGAAAAGCAATCAGAGGAT 60.183 38.462 0.00 0.00 34.43 3.24
3847 4201 4.379813 GGCGAAGAATGAAAAGCAATCAGA 60.380 41.667 0.00 0.00 0.00 3.27
3861 4215 3.514645 GCAAATCAACATGGCGAAGAAT 58.485 40.909 0.00 0.00 0.00 2.40
3871 4225 6.363065 AGAGATATGACAGGCAAATCAACAT 58.637 36.000 0.00 0.00 0.00 2.71
3922 4276 9.729281 AATAGCACCAATCTCAAATTTTCATTT 57.271 25.926 0.00 0.00 32.36 2.32
3923 4277 9.729281 AAATAGCACCAATCTCAAATTTTCATT 57.271 25.926 0.00 0.00 0.00 2.57
3925 4279 9.638239 GTAAATAGCACCAATCTCAAATTTTCA 57.362 29.630 0.00 0.00 0.00 2.69
3926 4280 9.087424 GGTAAATAGCACCAATCTCAAATTTTC 57.913 33.333 0.00 0.00 36.01 2.29
3927 4281 8.815912 AGGTAAATAGCACCAATCTCAAATTTT 58.184 29.630 0.00 0.00 38.62 1.82
3931 4285 5.652014 CCAGGTAAATAGCACCAATCTCAAA 59.348 40.000 0.00 0.00 38.62 2.69
4012 4443 2.203153 CTATTTGGGACGCCGGGG 60.203 66.667 18.33 18.33 0.00 5.73
4016 4447 0.451783 CAGCAACTATTTGGGACGCC 59.548 55.000 0.00 0.00 32.81 5.68
4018 4449 6.671614 TTTATACAGCAACTATTTGGGACG 57.328 37.500 0.00 0.00 32.81 4.79
4080 4876 9.499479 AGCAGATATACAAAACCATGAAGATAG 57.501 33.333 0.00 0.00 0.00 2.08
4091 4887 7.367285 TGTTTGACCAAGCAGATATACAAAAC 58.633 34.615 0.00 0.00 0.00 2.43
4240 5038 5.356751 AGCCGATTGCATAATGAAACAACTA 59.643 36.000 0.00 0.00 44.83 2.24
4360 5159 9.513906 TTGGACATGTCTTAGTTCAAATATTGA 57.486 29.630 24.50 0.00 38.04 2.57
4365 5164 7.138736 CGTTTTGGACATGTCTTAGTTCAAAT 58.861 34.615 24.50 0.00 41.45 2.32
4418 5217 7.068103 TGTGTAGAATGATTGTGTTTTGGTTCT 59.932 33.333 0.00 0.00 0.00 3.01
4536 5335 7.398829 TGTGCAACTACCCAGATAAAGAAATA 58.601 34.615 0.00 0.00 38.04 1.40
4579 5378 2.029649 ACAGATGCACAATTTCACAGCC 60.030 45.455 0.00 0.00 0.00 4.85
4603 5402 2.108157 GGTGTGGTCGTGTGCAGA 59.892 61.111 0.00 0.00 0.00 4.26
4792 5599 4.175516 CGTGCATGCACCAAAAATATTCT 58.824 39.130 37.92 0.00 43.49 2.40
4813 5620 1.806623 GCATCTGTAGTAACCCCTGCG 60.807 57.143 0.00 0.00 0.00 5.18
5085 5892 3.147595 AGCTGGTCGCCGCAGATA 61.148 61.111 12.25 0.00 40.39 1.98
5234 6041 1.136992 CGTAGACGTTTGCACTTGTCG 60.137 52.381 0.00 1.01 36.49 4.35
5336 6143 5.036737 TCGAGCATGCATATATGTATCACG 58.963 41.667 21.98 16.21 30.47 4.35
5393 6200 6.374588 TGTTGTACAAATAAAGGGGGAGAAA 58.625 36.000 10.51 0.00 0.00 2.52
5396 6203 4.705023 CCTGTTGTACAAATAAAGGGGGAG 59.295 45.833 10.51 0.00 0.00 4.30
5398 6205 4.668636 TCCTGTTGTACAAATAAAGGGGG 58.331 43.478 10.51 4.36 0.00 5.40
5399 6206 7.614192 AGTTATCCTGTTGTACAAATAAAGGGG 59.386 37.037 10.51 5.33 0.00 4.79
5400 6207 8.575649 AGTTATCCTGTTGTACAAATAAAGGG 57.424 34.615 10.51 6.64 0.00 3.95
5504 6311 6.933521 GGCATGACACATGTAGATATTTCTCT 59.066 38.462 0.00 0.00 33.17 3.10
5652 6461 6.148480 GTGTGTAGATTCACTCATTTTGCTCT 59.852 38.462 0.00 0.00 38.90 4.09
5704 6513 7.595502 CCTTTTAGCGAATTCGATACAGACTAT 59.404 37.037 31.01 5.61 40.10 2.12
5842 6651 0.032813 TTACTACTCCCCCAGTCCCG 60.033 60.000 0.00 0.00 36.43 5.14
5905 6714 3.589288 ACAGGTCCAGAATCTAAGCCTTT 59.411 43.478 0.00 0.00 0.00 3.11
5906 6715 3.054802 CACAGGTCCAGAATCTAAGCCTT 60.055 47.826 0.00 0.00 0.00 4.35
5907 6716 2.503356 CACAGGTCCAGAATCTAAGCCT 59.497 50.000 0.00 0.00 0.00 4.58
5915 6724 3.939740 ATATGCACACAGGTCCAGAAT 57.060 42.857 0.00 0.00 0.00 2.40
5958 6767 5.358160 CCTCCCAAAATTTAGGCTACTCAAG 59.642 44.000 0.00 0.00 0.00 3.02
5965 6774 4.337264 ACATCCTCCCAAAATTTAGGCT 57.663 40.909 0.00 0.00 0.00 4.58
6239 7059 9.360093 GAGATTATGACTATATTAGTGCACACC 57.640 37.037 21.04 0.00 39.59 4.16
6387 7208 9.224267 CATATGATGTTTTCGGAGGAATAAGAT 57.776 33.333 0.00 0.00 30.88 2.40
6398 7219 5.818136 ACTTCACCATATGATGTTTTCGG 57.182 39.130 3.65 0.00 41.68 4.30
6441 7264 1.076332 GCAACGACGGTATCTTGCTT 58.924 50.000 11.55 0.00 37.93 3.91



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.