Multiple sequence alignment - TraesCS4A01G320700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G320700 chr4A 100.000 3697 0 0 1 3697 609069959 609073655 0.000000e+00 6828.0
1 TraesCS4A01G320700 chr4A 95.014 1063 46 1 53 1115 609043084 609044139 0.000000e+00 1663.0
2 TraesCS4A01G320700 chr5B 91.861 1241 63 13 1531 2741 705633218 705631986 0.000000e+00 1698.0
3 TraesCS4A01G320700 chr5B 88.748 551 40 14 3150 3697 705629044 705628513 0.000000e+00 654.0
4 TraesCS4A01G320700 chr5B 88.406 345 22 8 1160 1495 705633715 705633380 2.070000e-107 399.0
5 TraesCS4A01G320700 chr5B 96.154 52 2 0 1115 1166 456957502 456957451 6.580000e-13 86.1
6 TraesCS4A01G320700 chr5D 89.787 1361 87 20 1531 2851 563442205 563440857 0.000000e+00 1696.0
7 TraesCS4A01G320700 chr5D 92.547 322 18 3 3376 3697 563436855 563436540 1.210000e-124 457.0
8 TraesCS4A01G320700 chr5D 91.707 205 15 2 3161 3365 563437174 563436972 2.170000e-72 283.0
9 TraesCS4A01G320700 chr5D 97.260 73 2 0 2871 2943 563440801 563440729 1.390000e-24 124.0
10 TraesCS4A01G320700 chr1A 92.025 1116 74 10 2 1114 116641557 116642660 0.000000e+00 1554.0
11 TraesCS4A01G320700 chr1A 89.812 1119 98 11 3 1116 408821158 408820051 0.000000e+00 1421.0
12 TraesCS4A01G320700 chr1A 90.099 1111 84 20 16 1114 221303239 221304335 0.000000e+00 1419.0
13 TraesCS4A01G320700 chr1A 94.382 89 5 0 2056 2144 402260280 402260368 1.790000e-28 137.0
14 TraesCS4A01G320700 chr1A 97.872 47 1 0 1115 1161 56049690 56049644 8.510000e-12 82.4
15 TraesCS4A01G320700 chr2A 91.362 1123 74 18 2 1115 278346254 278347362 0.000000e+00 1515.0
16 TraesCS4A01G320700 chr2A 90.214 1124 82 23 2 1114 278376315 278377421 0.000000e+00 1441.0
17 TraesCS4A01G320700 chr2A 89.648 908 65 11 213 1115 365627526 365626643 0.000000e+00 1129.0
18 TraesCS4A01G320700 chr2A 95.918 49 2 0 1112 1160 546185891 546185939 3.060000e-11 80.5
19 TraesCS4A01G320700 chr2A 90.000 60 2 4 1115 1172 95660739 95660682 1.420000e-09 75.0
20 TraesCS4A01G320700 chr6A 90.320 1126 87 13 1 1115 139826435 139825321 0.000000e+00 1456.0
21 TraesCS4A01G320700 chr6A 100.000 45 0 0 1115 1159 17410882 17410838 2.370000e-12 84.2
22 TraesCS4A01G320700 chr6A 92.857 56 2 2 1112 1165 20054369 20054424 3.060000e-11 80.5
23 TraesCS4A01G320700 chr5A 90.288 1112 90 13 11 1115 29976017 29977117 0.000000e+00 1439.0
24 TraesCS4A01G320700 chr5A 90.198 1112 89 15 11 1114 29995498 29996597 0.000000e+00 1432.0
25 TraesCS4A01G320700 chr7A 85.714 161 15 3 955 1114 245606854 245606701 2.950000e-36 163.0
26 TraesCS4A01G320700 chr7B 97.674 86 2 0 2059 2144 427834312 427834227 8.270000e-32 148.0
27 TraesCS4A01G320700 chr7B 97.619 84 2 0 2059 2142 621800305 621800222 1.070000e-30 145.0
28 TraesCS4A01G320700 chr1B 96.629 89 3 0 2056 2144 665070940 665071028 8.270000e-32 148.0
29 TraesCS4A01G320700 chr1B 95.506 89 4 0 2056 2144 317589633 317589721 3.850000e-30 143.0
30 TraesCS4A01G320700 chr1B 92.857 56 3 1 1112 1167 559558804 559558858 3.060000e-11 80.5
31 TraesCS4A01G320700 chr7D 94.382 89 5 0 2056 2144 629783536 629783624 1.790000e-28 137.0
32 TraesCS4A01G320700 chr3A 94.186 86 2 1 2059 2144 638493435 638493517 1.080000e-25 128.0
33 TraesCS4A01G320700 chr3B 94.340 53 3 0 1115 1167 447380698 447380646 8.510000e-12 82.4
34 TraesCS4A01G320700 chr4B 94.231 52 3 0 1115 1166 643109819 643109768 3.060000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G320700 chr4A 609069959 609073655 3696 False 6828 6828 100.000000 1 3697 1 chr4A.!!$F2 3696
1 TraesCS4A01G320700 chr4A 609043084 609044139 1055 False 1663 1663 95.014000 53 1115 1 chr4A.!!$F1 1062
2 TraesCS4A01G320700 chr5B 705628513 705633715 5202 True 917 1698 89.671667 1160 3697 3 chr5B.!!$R2 2537
3 TraesCS4A01G320700 chr5D 563436540 563442205 5665 True 640 1696 92.825250 1531 3697 4 chr5D.!!$R1 2166
4 TraesCS4A01G320700 chr1A 116641557 116642660 1103 False 1554 1554 92.025000 2 1114 1 chr1A.!!$F1 1112
5 TraesCS4A01G320700 chr1A 408820051 408821158 1107 True 1421 1421 89.812000 3 1116 1 chr1A.!!$R2 1113
6 TraesCS4A01G320700 chr1A 221303239 221304335 1096 False 1419 1419 90.099000 16 1114 1 chr1A.!!$F2 1098
7 TraesCS4A01G320700 chr2A 278346254 278347362 1108 False 1515 1515 91.362000 2 1115 1 chr2A.!!$F1 1113
8 TraesCS4A01G320700 chr2A 278376315 278377421 1106 False 1441 1441 90.214000 2 1114 1 chr2A.!!$F2 1112
9 TraesCS4A01G320700 chr2A 365626643 365627526 883 True 1129 1129 89.648000 213 1115 1 chr2A.!!$R2 902
10 TraesCS4A01G320700 chr6A 139825321 139826435 1114 True 1456 1456 90.320000 1 1115 1 chr6A.!!$R2 1114
11 TraesCS4A01G320700 chr5A 29976017 29977117 1100 False 1439 1439 90.288000 11 1115 1 chr5A.!!$F1 1104
12 TraesCS4A01G320700 chr5A 29995498 29996597 1099 False 1432 1432 90.198000 11 1114 1 chr5A.!!$F2 1103

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
818 838 1.003331 TGTTCATTGCGTTGTTCCGTC 60.003 47.619 0.0 0.0 0.0 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2745 2950 0.905357 AGCAGGAGGTTACGATTGCT 59.095 50.0 0.0 0.0 37.09 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 8.669243 CAGACTCAAGGGTCATCTTTATTTTAC 58.331 37.037 2.53 0.00 38.57 2.01
37 39 6.011096 TCAAGGGTCATCTTTATTTTACCCCT 60.011 38.462 4.74 0.00 46.45 4.79
269 283 3.319198 GCCTGGTCGGGTCTTCCA 61.319 66.667 0.00 0.00 34.36 3.53
388 402 4.479158 GGTTATGGGCAGATGGGAATTTA 58.521 43.478 0.00 0.00 0.00 1.40
405 419 7.614583 TGGGAATTTATTAATGTCCGGTTGTAA 59.385 33.333 0.00 0.00 0.00 2.41
818 838 1.003331 TGTTCATTGCGTTGTTCCGTC 60.003 47.619 0.00 0.00 0.00 4.79
839 861 4.461081 GTCTCAGTTGATCAGTAGTGGAGT 59.539 45.833 0.00 0.00 0.00 3.85
846 868 4.930696 TGATCAGTAGTGGAGTCCAGTTA 58.069 43.478 24.53 11.62 38.30 2.24
859 881 3.547513 AGTTAGGGCGATCGGGGC 61.548 66.667 18.30 0.92 0.00 5.80
945 969 6.979817 TGGTTGATGTAATGCTTTATTCATGC 59.020 34.615 8.04 0.00 0.00 4.06
971 995 2.076863 GTGAAGTGGCGATTGTAAGCT 58.923 47.619 0.00 0.00 0.00 3.74
977 1001 2.281762 GTGGCGATTGTAAGCTAACTCG 59.718 50.000 0.00 0.00 0.00 4.18
1000 1026 6.660521 TCGGTACCTCTTTCTTATTCAGTACA 59.339 38.462 10.90 0.00 32.43 2.90
1001 1027 7.341256 TCGGTACCTCTTTCTTATTCAGTACAT 59.659 37.037 10.90 0.00 32.43 2.29
1002 1028 7.435488 CGGTACCTCTTTCTTATTCAGTACATG 59.565 40.741 10.90 0.00 32.43 3.21
1003 1029 7.711339 GGTACCTCTTTCTTATTCAGTACATGG 59.289 40.741 4.06 0.00 32.43 3.66
1004 1030 6.653989 ACCTCTTTCTTATTCAGTACATGGG 58.346 40.000 0.00 0.00 0.00 4.00
1005 1031 6.443849 ACCTCTTTCTTATTCAGTACATGGGA 59.556 38.462 0.00 0.00 0.00 4.37
1006 1032 7.037586 ACCTCTTTCTTATTCAGTACATGGGAA 60.038 37.037 0.00 0.00 0.00 3.97
1085 1111 3.361174 TCGTGCTCCGACACATGA 58.639 55.556 0.00 0.00 41.60 3.07
1105 1131 4.583871 TGAGAGATATAGCTGCATCGAGA 58.416 43.478 1.02 0.00 0.00 4.04
1116 1142 3.186409 GCTGCATCGAGAGTGTTACAAAA 59.814 43.478 0.00 0.00 0.00 2.44
1117 1143 4.667668 GCTGCATCGAGAGTGTTACAAAAG 60.668 45.833 0.00 0.00 0.00 2.27
1118 1144 3.745975 TGCATCGAGAGTGTTACAAAAGG 59.254 43.478 0.00 0.00 0.00 3.11
1119 1145 3.125316 GCATCGAGAGTGTTACAAAAGGG 59.875 47.826 0.00 0.00 0.00 3.95
1120 1146 2.762745 TCGAGAGTGTTACAAAAGGGC 58.237 47.619 0.00 0.00 0.00 5.19
1121 1147 1.804748 CGAGAGTGTTACAAAAGGGCC 59.195 52.381 0.00 0.00 0.00 5.80
1122 1148 2.550208 CGAGAGTGTTACAAAAGGGCCT 60.550 50.000 0.00 0.00 0.00 5.19
1123 1149 3.487372 GAGAGTGTTACAAAAGGGCCTT 58.513 45.455 14.48 14.48 0.00 4.35
1124 1150 4.648651 GAGAGTGTTACAAAAGGGCCTTA 58.351 43.478 21.25 0.00 0.00 2.69
1125 1151 4.395625 AGAGTGTTACAAAAGGGCCTTAC 58.604 43.478 21.25 14.13 0.00 2.34
1126 1152 3.143728 AGTGTTACAAAAGGGCCTTACG 58.856 45.455 21.25 15.90 0.00 3.18
1127 1153 3.140623 GTGTTACAAAAGGGCCTTACGA 58.859 45.455 21.25 2.39 0.00 3.43
1128 1154 3.565063 GTGTTACAAAAGGGCCTTACGAA 59.435 43.478 21.25 8.86 0.00 3.85
1129 1155 3.565063 TGTTACAAAAGGGCCTTACGAAC 59.435 43.478 21.25 19.72 0.00 3.95
1130 1156 2.651382 ACAAAAGGGCCTTACGAACT 57.349 45.000 21.25 0.00 0.00 3.01
1131 1157 2.227194 ACAAAAGGGCCTTACGAACTG 58.773 47.619 21.25 12.13 0.00 3.16
1132 1158 1.539827 CAAAAGGGCCTTACGAACTGG 59.460 52.381 21.25 0.00 0.00 4.00
1133 1159 0.769247 AAAGGGCCTTACGAACTGGT 59.231 50.000 21.25 0.00 0.00 4.00
1134 1160 0.036306 AAGGGCCTTACGAACTGGTG 59.964 55.000 19.37 0.00 0.00 4.17
1135 1161 2.038837 GGGCCTTACGAACTGGTGC 61.039 63.158 0.84 0.00 0.00 5.01
1136 1162 1.003718 GGCCTTACGAACTGGTGCT 60.004 57.895 0.00 0.00 0.00 4.40
1137 1163 0.248289 GGCCTTACGAACTGGTGCTA 59.752 55.000 0.00 0.00 0.00 3.49
1138 1164 1.134491 GGCCTTACGAACTGGTGCTAT 60.134 52.381 0.00 0.00 0.00 2.97
1139 1165 2.629051 GCCTTACGAACTGGTGCTATT 58.371 47.619 0.00 0.00 0.00 1.73
1140 1166 2.351726 GCCTTACGAACTGGTGCTATTG 59.648 50.000 0.00 0.00 0.00 1.90
1141 1167 2.351726 CCTTACGAACTGGTGCTATTGC 59.648 50.000 0.00 0.00 40.20 3.56
1142 1168 2.018542 TACGAACTGGTGCTATTGCC 57.981 50.000 0.00 0.00 38.71 4.52
1143 1169 0.676782 ACGAACTGGTGCTATTGCCC 60.677 55.000 0.00 0.00 38.71 5.36
1144 1170 0.676466 CGAACTGGTGCTATTGCCCA 60.676 55.000 8.53 8.53 37.25 5.36
1147 1173 3.271250 CTGGTGCTATTGCCCAGTT 57.729 52.632 20.45 0.00 44.87 3.16
1148 1174 1.098050 CTGGTGCTATTGCCCAGTTC 58.902 55.000 20.45 0.00 44.87 3.01
1149 1175 0.698238 TGGTGCTATTGCCCAGTTCT 59.302 50.000 5.50 0.00 35.58 3.01
1150 1176 1.098050 GGTGCTATTGCCCAGTTCTG 58.902 55.000 0.00 0.00 38.71 3.02
1151 1177 0.453390 GTGCTATTGCCCAGTTCTGC 59.547 55.000 0.00 0.00 38.71 4.26
1152 1178 0.038021 TGCTATTGCCCAGTTCTGCA 59.962 50.000 0.00 0.00 38.71 4.41
1153 1179 0.453390 GCTATTGCCCAGTTCTGCAC 59.547 55.000 0.00 0.00 37.18 4.57
1154 1180 1.952367 GCTATTGCCCAGTTCTGCACT 60.952 52.381 0.00 0.00 37.18 4.40
1155 1181 2.680805 GCTATTGCCCAGTTCTGCACTA 60.681 50.000 0.00 0.00 37.18 2.74
1156 1182 2.119801 ATTGCCCAGTTCTGCACTAG 57.880 50.000 0.00 0.00 37.18 2.57
1157 1183 0.764890 TTGCCCAGTTCTGCACTAGT 59.235 50.000 0.00 0.00 37.18 2.57
1158 1184 0.035317 TGCCCAGTTCTGCACTAGTG 59.965 55.000 18.93 18.93 32.76 2.74
1166 1192 3.118408 AGTTCTGCACTAGTGGTTTCACA 60.118 43.478 23.95 11.14 45.91 3.58
1181 1207 4.452455 GGTTTCACAGGTACTCAGAATGTG 59.548 45.833 0.00 0.00 42.00 3.21
1211 1241 5.867716 ACTTACGTGGTTATAAGCTGACTTG 59.132 40.000 15.27 5.32 36.57 3.16
1236 1270 6.156748 ACGTAGATACATGGCAATGACTTA 57.843 37.500 8.45 0.00 37.24 2.24
1256 1290 5.425539 ACTTAGGCTACTTTCTCCTATTGCA 59.574 40.000 0.00 0.00 32.96 4.08
1314 1349 7.876582 TCAGAATTTCAGGCATGTGATAGATAG 59.123 37.037 0.00 0.00 0.00 2.08
1346 1381 8.632679 GGACACATGACAATAATCCAATTATGT 58.367 33.333 0.00 0.00 35.71 2.29
1406 1441 4.513318 TGGCAAAAATGAAAACCGAAATCC 59.487 37.500 0.00 0.00 0.00 3.01
1409 1444 6.306397 GCAAAAATGAAAACCGAAATCCATC 58.694 36.000 0.00 0.00 0.00 3.51
1415 1450 6.737254 TGAAAACCGAAATCCATCTAGTTC 57.263 37.500 0.00 0.00 0.00 3.01
1449 1484 3.472431 CGATTTCGGTTACGGTTGAAAC 58.528 45.455 0.00 0.00 41.39 2.78
1456 1491 4.575645 TCGGTTACGGTTGAAACATTTCTT 59.424 37.500 5.97 0.00 41.39 2.52
1477 1512 6.386654 TCTTAAATCGAAATTGGAAACCAGC 58.613 36.000 0.00 0.00 33.81 4.85
1495 1530 0.586319 GCAAAGCGCAGTCAGTTACA 59.414 50.000 11.47 0.00 41.79 2.41
1496 1531 1.002900 GCAAAGCGCAGTCAGTTACAA 60.003 47.619 11.47 0.00 41.79 2.41
1497 1532 2.908634 CAAAGCGCAGTCAGTTACAAG 58.091 47.619 11.47 0.00 0.00 3.16
1500 1535 0.164647 GCGCAGTCAGTTACAAGCTG 59.835 55.000 0.30 0.00 35.43 4.24
1503 1538 0.164647 CAGTCAGTTACAAGCTGCGC 59.835 55.000 0.00 0.00 34.21 6.09
1504 1539 0.249868 AGTCAGTTACAAGCTGCGCA 60.250 50.000 10.98 10.98 34.21 6.09
1505 1540 0.798776 GTCAGTTACAAGCTGCGCAT 59.201 50.000 12.24 0.00 34.21 4.73
1507 1542 0.795735 CAGTTACAAGCTGCGCATGC 60.796 55.000 12.24 17.16 43.20 4.06
1508 1543 0.957395 AGTTACAAGCTGCGCATGCT 60.957 50.000 23.02 23.02 43.34 3.79
1513 1659 3.357919 AGCTGCGCATGCTTTTGA 58.642 50.000 23.02 0.00 43.34 2.69
1525 1671 1.291184 GCTTTTGATGTTTGGGCGGC 61.291 55.000 0.00 0.00 0.00 6.53
1594 1755 0.595095 CAAAGCCAAGCTCAGTGGTC 59.405 55.000 4.86 0.00 38.25 4.02
1595 1756 0.886490 AAAGCCAAGCTCAGTGGTCG 60.886 55.000 4.86 0.00 38.25 4.79
1596 1757 2.738213 AAGCCAAGCTCAGTGGTCGG 62.738 60.000 4.86 0.00 38.25 4.79
1597 1758 2.743718 CCAAGCTCAGTGGTCGGT 59.256 61.111 0.00 0.00 0.00 4.69
1598 1759 1.669115 CCAAGCTCAGTGGTCGGTG 60.669 63.158 0.00 0.00 0.00 4.94
1601 1762 1.399744 AAGCTCAGTGGTCGGTGTGA 61.400 55.000 0.00 0.00 0.00 3.58
1882 2058 1.830408 CGCGAGATCCTCCCCTTCT 60.830 63.158 0.00 0.00 0.00 2.85
1948 2124 3.924013 ATGGCCTCAGACGGGGACA 62.924 63.158 3.32 0.00 45.55 4.02
1949 2125 3.319198 GGCCTCAGACGGGGACAA 61.319 66.667 0.00 0.00 0.00 3.18
1977 2153 0.941463 CGCTGTGCAACGTCTTCTCT 60.941 55.000 0.00 0.00 42.39 3.10
2040 2216 4.070552 AAGGTCGTGCTCTCCGCC 62.071 66.667 0.00 0.00 38.05 6.13
2134 2310 4.148825 GCGTCATGTCCGCCTCCT 62.149 66.667 17.68 0.00 45.20 3.69
2187 2363 0.540365 ACGGAGGTTTCCAGGACGTA 60.540 55.000 0.00 0.00 44.26 3.57
2190 2366 0.606604 GAGGTTTCCAGGACGTAGCA 59.393 55.000 0.00 0.00 0.00 3.49
2321 2516 1.521681 GAAGTGGCGGCGCTTCTAT 60.522 57.895 41.45 23.06 38.36 1.98
2359 2554 3.706373 GCTCCTCCTGGTGGCGAA 61.706 66.667 9.96 0.00 34.23 4.70
2412 2607 1.093496 CCGGCCCAAGTATTCGGTTC 61.093 60.000 0.00 0.00 36.38 3.62
2414 2609 1.828979 GGCCCAAGTATTCGGTTCAA 58.171 50.000 0.00 0.00 0.00 2.69
2415 2610 2.164338 GGCCCAAGTATTCGGTTCAAA 58.836 47.619 0.00 0.00 0.00 2.69
2564 2759 1.455786 CGGAAGAACTGCGTGTACTTG 59.544 52.381 0.00 0.00 33.55 3.16
2677 2881 2.105128 CATCGAGCCCGTCTGGAC 59.895 66.667 0.00 0.00 37.49 4.02
2686 2890 2.261671 CGTCTGGACTTCCCCGTG 59.738 66.667 0.00 0.00 34.29 4.94
2702 2906 1.153549 GTGGGTCGCCTGATCTGAC 60.154 63.158 0.38 0.80 0.00 3.51
2731 2936 2.863153 GTGCACGGCATGTCTGTC 59.137 61.111 0.00 0.00 41.91 3.51
2745 2950 4.006780 TGTCTGTCTGAATAAGCAGCAA 57.993 40.909 0.00 0.00 35.86 3.91
2746 2951 3.999001 TGTCTGTCTGAATAAGCAGCAAG 59.001 43.478 0.00 0.00 35.86 4.01
2747 2952 3.005554 TCTGTCTGAATAAGCAGCAAGC 58.994 45.455 0.00 0.00 46.19 4.01
2765 2970 2.108168 AGCAATCGTAACCTCCTGCTA 58.892 47.619 0.00 0.00 38.32 3.49
2800 3005 1.481240 CGAGTGCGATGTACTCATGG 58.519 55.000 13.98 0.00 43.62 3.66
2801 3006 1.202302 CGAGTGCGATGTACTCATGGT 60.202 52.381 13.98 0.00 43.62 3.55
2802 3007 2.464865 GAGTGCGATGTACTCATGGTC 58.535 52.381 9.70 0.00 43.09 4.02
2803 3008 1.824852 AGTGCGATGTACTCATGGTCA 59.175 47.619 0.00 0.00 34.06 4.02
2804 3009 2.432146 AGTGCGATGTACTCATGGTCAT 59.568 45.455 0.00 0.00 34.06 3.06
2805 3010 2.541346 GTGCGATGTACTCATGGTCATG 59.459 50.000 4.67 4.67 40.09 3.07
2806 3011 2.138320 GCGATGTACTCATGGTCATGG 58.862 52.381 10.61 4.91 39.24 3.66
2814 3019 3.008835 CTCATGGTCATGGGTGTGATT 57.991 47.619 10.61 0.00 39.24 2.57
2826 3031 2.029918 GGGTGTGATTTCTTTCCTGCAC 60.030 50.000 0.00 0.00 0.00 4.57
2955 3199 5.180271 ACTTCAACTAAGTTCACGGTCAAA 58.820 37.500 0.00 0.00 46.61 2.69
2956 3200 5.293569 ACTTCAACTAAGTTCACGGTCAAAG 59.706 40.000 0.00 0.00 46.61 2.77
2957 3201 5.013568 TCAACTAAGTTCACGGTCAAAGA 57.986 39.130 0.00 0.00 0.00 2.52
2958 3202 5.607477 TCAACTAAGTTCACGGTCAAAGAT 58.393 37.500 0.00 0.00 0.00 2.40
2959 3203 5.465390 TCAACTAAGTTCACGGTCAAAGATG 59.535 40.000 0.00 0.00 0.00 2.90
2960 3204 4.315803 ACTAAGTTCACGGTCAAAGATGG 58.684 43.478 0.00 0.00 0.00 3.51
2961 3205 1.523758 AGTTCACGGTCAAAGATGGC 58.476 50.000 0.00 0.00 0.00 4.40
2962 3206 1.202758 AGTTCACGGTCAAAGATGGCA 60.203 47.619 0.00 0.00 30.82 4.92
3013 6157 2.804527 GTTGTAGTGGAAAGTCCCGTTC 59.195 50.000 0.00 0.00 35.03 3.95
3060 6204 8.671384 TCTTTTAACCCTATATATGTGTGTGC 57.329 34.615 0.00 0.00 0.00 4.57
3079 6223 2.093869 TGCGTGGGTAGTAAATCTGACC 60.094 50.000 0.00 0.00 0.00 4.02
3094 6238 2.038762 ACCCACACCCACCTCCTT 60.039 61.111 0.00 0.00 0.00 3.36
3112 6256 5.451520 CCTCCTTGTAGGGTTATTACTCGTG 60.452 48.000 0.00 0.00 35.59 4.35
3113 6257 5.263599 TCCTTGTAGGGTTATTACTCGTGA 58.736 41.667 0.00 0.00 35.59 4.35
3147 6291 1.547372 GGGCTTCACACATTGCTCAAT 59.453 47.619 0.00 0.00 0.00 2.57
3194 8423 7.962964 ATGACATTTCTCGAACTTTGAAGTA 57.037 32.000 0.00 0.00 38.57 2.24
3219 8448 5.104941 CCTCCAATAGTATTGTGTGGACTCA 60.105 44.000 19.18 0.00 34.67 3.41
3252 8481 0.464870 ATTTTGCTTGCAGCCACACA 59.535 45.000 5.82 0.00 41.51 3.72
3254 8483 0.459934 TTTGCTTGCAGCCACACAAC 60.460 50.000 5.82 0.00 41.51 3.32
3312 8541 9.716507 ATAAAAGGTCGAAACGAATTATTGATG 57.283 29.630 0.00 0.00 37.72 3.07
3482 8820 6.036517 CGGTCATCCAATCAAACAAACAAAAA 59.963 34.615 0.00 0.00 0.00 1.94
3573 8911 4.448537 TTCCACTAATCAAAAATGCCGG 57.551 40.909 0.00 0.00 0.00 6.13
3574 8912 2.165437 TCCACTAATCAAAAATGCCGGC 59.835 45.455 22.73 22.73 0.00 6.13
3575 8913 2.094286 CCACTAATCAAAAATGCCGGCA 60.094 45.455 34.80 34.80 0.00 5.69
3616 8954 8.438676 ACAATATGTCATAGGTAAACAAGAGC 57.561 34.615 0.00 0.00 0.00 4.09
3621 8959 6.530120 TGTCATAGGTAAACAAGAGCAAGAA 58.470 36.000 0.00 0.00 0.00 2.52
3649 8987 7.081976 ACTAATTTAAGGTGCGTTTAAAGCTG 58.918 34.615 4.39 0.00 34.54 4.24
3653 8991 0.891904 GGTGCGTTTAAAGCTGGGGA 60.892 55.000 4.39 0.00 35.28 4.81
3686 9024 5.575606 ACGTATGAGTGATTTACAAACCTCG 59.424 40.000 0.00 0.00 0.00 4.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 39 2.798445 TAGAGAAGCACTGGCCCGGA 62.798 60.000 0.73 0.00 42.56 5.14
388 402 7.446013 TCAAGTTCTTTACAACCGGACATTAAT 59.554 33.333 9.46 0.00 0.00 1.40
437 451 2.032634 CGGCTACACATGCGGTTGT 61.033 57.895 0.00 0.00 0.00 3.32
676 695 0.036952 CAGCAATCTCACACCCTCGT 60.037 55.000 0.00 0.00 0.00 4.18
818 838 4.142271 GGACTCCACTACTGATCAACTGAG 60.142 50.000 0.00 0.35 0.00 3.35
839 861 2.131709 CCCGATCGCCCTAACTGGA 61.132 63.158 10.32 0.00 38.35 3.86
859 881 4.475345 AGACTACCCCTAATGCTACAGAG 58.525 47.826 0.00 0.00 0.00 3.35
945 969 2.030893 ACAATCGCCACTTCACACATTG 60.031 45.455 0.00 0.00 0.00 2.82
971 995 7.395489 ACTGAATAAGAAAGAGGTACCGAGTTA 59.605 37.037 6.18 0.89 0.00 2.24
977 1001 7.711339 CCATGTACTGAATAAGAAAGAGGTACC 59.289 40.741 2.73 2.73 0.00 3.34
1000 1026 2.053747 TTACACCTCCCACTTCCCAT 57.946 50.000 0.00 0.00 0.00 4.00
1001 1027 1.702957 CTTTACACCTCCCACTTCCCA 59.297 52.381 0.00 0.00 0.00 4.37
1002 1028 1.982958 TCTTTACACCTCCCACTTCCC 59.017 52.381 0.00 0.00 0.00 3.97
1003 1029 4.302559 AATCTTTACACCTCCCACTTCC 57.697 45.455 0.00 0.00 0.00 3.46
1004 1030 5.183969 GGTAATCTTTACACCTCCCACTTC 58.816 45.833 0.38 0.00 0.00 3.01
1005 1031 4.018688 GGGTAATCTTTACACCTCCCACTT 60.019 45.833 0.00 0.00 34.39 3.16
1006 1032 3.522343 GGGTAATCTTTACACCTCCCACT 59.478 47.826 0.00 0.00 34.39 4.00
1085 1111 4.395854 CACTCTCGATGCAGCTATATCTCT 59.604 45.833 0.00 0.00 0.00 3.10
1105 1131 3.143728 CGTAAGGCCCTTTTGTAACACT 58.856 45.455 0.00 0.00 0.00 3.55
1116 1142 1.677552 CACCAGTTCGTAAGGCCCT 59.322 57.895 0.00 0.00 38.47 5.19
1117 1143 2.038837 GCACCAGTTCGTAAGGCCC 61.039 63.158 0.00 0.00 38.47 5.80
1118 1144 0.248289 TAGCACCAGTTCGTAAGGCC 59.752 55.000 0.00 0.00 38.47 5.19
1119 1145 2.311124 ATAGCACCAGTTCGTAAGGC 57.689 50.000 0.00 0.00 38.47 4.35
1120 1146 2.351726 GCAATAGCACCAGTTCGTAAGG 59.648 50.000 0.00 0.00 41.58 2.69
1121 1147 2.351726 GGCAATAGCACCAGTTCGTAAG 59.648 50.000 0.00 0.00 44.61 2.34
1122 1148 2.352388 GGCAATAGCACCAGTTCGTAA 58.648 47.619 0.00 0.00 44.61 3.18
1123 1149 1.406341 GGGCAATAGCACCAGTTCGTA 60.406 52.381 0.00 0.00 44.61 3.43
1124 1150 0.676782 GGGCAATAGCACCAGTTCGT 60.677 55.000 0.00 0.00 44.61 3.85
1125 1151 0.676466 TGGGCAATAGCACCAGTTCG 60.676 55.000 0.00 0.00 46.13 3.95
1126 1152 1.098050 CTGGGCAATAGCACCAGTTC 58.902 55.000 13.42 0.00 46.13 3.01
1127 1153 3.271250 CTGGGCAATAGCACCAGTT 57.729 52.632 13.42 0.00 46.13 3.16
1130 1156 0.698238 AGAACTGGGCAATAGCACCA 59.302 50.000 0.00 0.00 46.13 4.17
1131 1157 1.098050 CAGAACTGGGCAATAGCACC 58.902 55.000 0.00 0.00 46.13 5.01
1133 1159 0.038021 TGCAGAACTGGGCAATAGCA 59.962 50.000 3.99 0.00 44.61 3.49
1134 1160 0.453390 GTGCAGAACTGGGCAATAGC 59.547 55.000 3.99 0.00 42.45 2.97
1135 1161 2.119801 AGTGCAGAACTGGGCAATAG 57.880 50.000 3.99 0.00 42.45 1.73
1136 1162 2.571653 ACTAGTGCAGAACTGGGCAATA 59.428 45.455 0.00 0.00 41.55 1.90
1137 1163 1.352352 ACTAGTGCAGAACTGGGCAAT 59.648 47.619 0.00 0.00 41.55 3.56
1138 1164 0.764890 ACTAGTGCAGAACTGGGCAA 59.235 50.000 0.00 0.00 41.55 4.52
1139 1165 0.035317 CACTAGTGCAGAACTGGGCA 59.965 55.000 10.54 0.00 41.55 5.36
1140 1166 0.674895 CCACTAGTGCAGAACTGGGC 60.675 60.000 17.86 0.00 41.55 5.36
1141 1167 0.687354 ACCACTAGTGCAGAACTGGG 59.313 55.000 17.86 2.92 41.55 4.45
1142 1168 2.550830 AACCACTAGTGCAGAACTGG 57.449 50.000 17.86 3.75 42.86 4.00
1143 1169 3.248602 GTGAAACCACTAGTGCAGAACTG 59.751 47.826 17.86 4.48 40.26 3.16
1144 1170 3.118408 TGTGAAACCACTAGTGCAGAACT 60.118 43.478 17.86 0.00 38.56 3.01
1145 1171 3.202906 TGTGAAACCACTAGTGCAGAAC 58.797 45.455 17.86 11.24 35.63 3.01
1146 1172 3.466836 CTGTGAAACCACTAGTGCAGAA 58.533 45.455 17.86 0.00 35.63 3.02
1147 1173 2.224281 CCTGTGAAACCACTAGTGCAGA 60.224 50.000 17.86 7.53 35.63 4.26
1148 1174 2.146342 CCTGTGAAACCACTAGTGCAG 58.854 52.381 17.86 16.26 35.63 4.41
1149 1175 1.488812 ACCTGTGAAACCACTAGTGCA 59.511 47.619 17.86 7.08 35.63 4.57
1150 1176 2.256117 ACCTGTGAAACCACTAGTGC 57.744 50.000 17.86 4.33 35.63 4.40
1151 1177 4.038763 TGAGTACCTGTGAAACCACTAGTG 59.961 45.833 16.34 16.34 35.63 2.74
1152 1178 4.220724 TGAGTACCTGTGAAACCACTAGT 58.779 43.478 0.00 0.00 35.63 2.57
1153 1179 4.523173 TCTGAGTACCTGTGAAACCACTAG 59.477 45.833 0.00 0.00 35.63 2.57
1154 1180 4.476297 TCTGAGTACCTGTGAAACCACTA 58.524 43.478 0.00 0.00 35.63 2.74
1155 1181 3.305720 TCTGAGTACCTGTGAAACCACT 58.694 45.455 0.00 0.00 35.63 4.00
1156 1182 3.746045 TCTGAGTACCTGTGAAACCAC 57.254 47.619 0.00 0.00 34.36 4.16
1157 1183 4.102524 ACATTCTGAGTACCTGTGAAACCA 59.897 41.667 0.00 0.00 34.36 3.67
1158 1184 4.452455 CACATTCTGAGTACCTGTGAAACC 59.548 45.833 0.00 0.00 39.59 3.27
1166 1192 4.835615 AGTTGAGTCACATTCTGAGTACCT 59.164 41.667 0.00 0.00 32.13 3.08
1211 1241 5.050490 AGTCATTGCCATGTATCTACGTTC 58.950 41.667 0.00 0.00 0.00 3.95
1236 1270 6.500589 TTATGCAATAGGAGAAAGTAGCCT 57.499 37.500 0.00 0.00 35.82 4.58
1269 1303 7.750229 TTCTGATGAAAGTGAATTTGCTACT 57.250 32.000 0.00 0.00 0.00 2.57
1314 1349 5.065218 GGATTATTGTCATGTGTCCACACTC 59.935 44.000 11.07 0.00 46.55 3.51
1375 1410 6.368516 CGGTTTTCATTTTTGCCAACAGATAT 59.631 34.615 0.00 0.00 0.00 1.63
1381 1416 4.866682 TTCGGTTTTCATTTTTGCCAAC 57.133 36.364 0.00 0.00 0.00 3.77
1387 1422 8.585018 ACTAGATGGATTTCGGTTTTCATTTTT 58.415 29.630 0.00 0.00 0.00 1.94
1406 1441 4.269603 CGCTGAATTCCACTGAACTAGATG 59.730 45.833 2.27 0.00 32.13 2.90
1409 1444 3.849911 TCGCTGAATTCCACTGAACTAG 58.150 45.455 2.27 0.00 32.13 2.57
1415 1450 2.223112 CCGAAATCGCTGAATTCCACTG 60.223 50.000 2.27 0.00 38.18 3.66
1449 1484 9.202273 TGGTTTCCAATTTCGATTTAAGAAATG 57.798 29.630 5.14 1.36 44.65 2.32
1456 1491 5.713792 TGCTGGTTTCCAATTTCGATTTA 57.286 34.783 0.00 0.00 30.80 1.40
1469 1504 0.661483 GACTGCGCTTTGCTGGTTTC 60.661 55.000 9.73 0.00 45.96 2.78
1477 1512 2.908634 CTTGTAACTGACTGCGCTTTG 58.091 47.619 9.73 0.99 0.00 2.77
1500 1535 1.127213 CCAAACATCAAAAGCATGCGC 59.873 47.619 13.01 0.00 38.99 6.09
1503 1538 1.727880 CGCCCAAACATCAAAAGCATG 59.272 47.619 0.00 0.00 0.00 4.06
1504 1539 1.338011 CCGCCCAAACATCAAAAGCAT 60.338 47.619 0.00 0.00 0.00 3.79
1505 1540 0.033228 CCGCCCAAACATCAAAAGCA 59.967 50.000 0.00 0.00 0.00 3.91
1507 1542 0.670239 GGCCGCCCAAACATCAAAAG 60.670 55.000 0.00 0.00 0.00 2.27
1508 1543 1.369321 GGCCGCCCAAACATCAAAA 59.631 52.632 0.00 0.00 0.00 2.44
1509 1544 2.578714 GGGCCGCCCAAACATCAAA 61.579 57.895 24.62 0.00 44.65 2.69
1525 1671 3.386543 GCTACAGCATACAGTGGGG 57.613 57.895 0.00 0.00 41.59 4.96
1558 1719 3.005539 GGCCACTCTCCTCTGCCA 61.006 66.667 0.00 0.00 41.76 4.92
1594 1755 0.729116 GAAGCCATCACATCACACCG 59.271 55.000 0.00 0.00 0.00 4.94
1595 1756 1.098050 GGAAGCCATCACATCACACC 58.902 55.000 0.00 0.00 0.00 4.16
1596 1757 1.825090 TGGAAGCCATCACATCACAC 58.175 50.000 0.00 0.00 0.00 3.82
1597 1758 2.812836 ATGGAAGCCATCACATCACA 57.187 45.000 0.00 0.00 40.74 3.58
1835 2011 1.901650 GCTGAAGACGGCAAGTTCGG 61.902 60.000 0.00 0.00 46.56 4.30
1954 2130 4.415501 GACGTTGCACAGCGCGAG 62.416 66.667 12.10 3.23 46.97 5.03
1962 2138 1.862806 GCCAGAGAAGACGTTGCAC 59.137 57.895 0.00 0.00 0.00 4.57
2129 2305 2.303549 GATCGTGGTCCTGCAGGAGG 62.304 65.000 35.92 23.24 46.49 4.30
2134 2310 2.571757 GTCGATCGTGGTCCTGCA 59.428 61.111 15.94 0.00 0.00 4.41
2304 2499 1.521681 GATAGAAGCGCCGCCACTT 60.522 57.895 4.98 0.00 0.00 3.16
2316 2511 2.820728 TCGGACTCCACCAGATAGAA 57.179 50.000 0.00 0.00 0.00 2.10
2318 2513 1.615883 CCATCGGACTCCACCAGATAG 59.384 57.143 0.00 0.00 0.00 2.08
2321 2516 1.685765 CCCATCGGACTCCACCAGA 60.686 63.158 0.00 0.00 0.00 3.86
2359 2554 3.370953 CCTTATGCCCTGCACTACTTTCT 60.371 47.826 0.00 0.00 43.04 2.52
2399 2594 4.700213 ACCTCCATTTGAACCGAATACTTG 59.300 41.667 0.00 0.00 0.00 3.16
2401 2596 4.261801 CACCTCCATTTGAACCGAATACT 58.738 43.478 0.00 0.00 0.00 2.12
2412 2607 3.814268 CCGCCGCACCTCCATTTG 61.814 66.667 0.00 0.00 0.00 2.32
2414 2609 4.344865 AACCGCCGCACCTCCATT 62.345 61.111 0.00 0.00 0.00 3.16
2415 2610 4.778143 GAACCGCCGCACCTCCAT 62.778 66.667 0.00 0.00 0.00 3.41
2584 2779 3.672295 TACACGCCGATGGCATGCA 62.672 57.895 21.36 6.13 46.60 3.96
2654 2858 3.753070 GACGGGCTCGATGTCGACC 62.753 68.421 15.95 7.99 44.22 4.79
2686 2890 2.501610 GGTCAGATCAGGCGACCC 59.498 66.667 10.82 0.00 42.87 4.46
2731 2936 3.181503 ACGATTGCTTGCTGCTTATTCAG 60.182 43.478 0.00 0.00 43.37 3.02
2745 2950 0.905357 AGCAGGAGGTTACGATTGCT 59.095 50.000 0.00 0.00 37.09 3.91
2746 2951 2.474816 CTAGCAGGAGGTTACGATTGC 58.525 52.381 0.00 0.00 0.00 3.56
2747 2952 2.101582 AGCTAGCAGGAGGTTACGATTG 59.898 50.000 18.83 0.00 0.00 2.67
2748 2953 2.101582 CAGCTAGCAGGAGGTTACGATT 59.898 50.000 18.83 0.00 0.00 3.34
2765 2970 2.047844 CGCACCACTGTAGCAGCT 60.048 61.111 0.00 0.00 34.37 4.24
2789 2994 2.846206 ACACCCATGACCATGAGTACAT 59.154 45.455 11.28 0.00 41.20 2.29
2800 3005 4.082125 AGGAAAGAAATCACACCCATGAC 58.918 43.478 0.00 0.00 0.00 3.06
2801 3006 4.081406 CAGGAAAGAAATCACACCCATGA 58.919 43.478 0.00 0.00 0.00 3.07
2802 3007 3.367703 GCAGGAAAGAAATCACACCCATG 60.368 47.826 0.00 0.00 0.00 3.66
2803 3008 2.827921 GCAGGAAAGAAATCACACCCAT 59.172 45.455 0.00 0.00 0.00 4.00
2804 3009 2.238521 GCAGGAAAGAAATCACACCCA 58.761 47.619 0.00 0.00 0.00 4.51
2805 3010 2.029918 GTGCAGGAAAGAAATCACACCC 60.030 50.000 0.00 0.00 0.00 4.61
2806 3011 2.887152 AGTGCAGGAAAGAAATCACACC 59.113 45.455 0.00 0.00 0.00 4.16
2814 3019 3.819368 TGAATGACAGTGCAGGAAAGAA 58.181 40.909 0.00 0.00 0.00 2.52
2933 3177 5.522460 TCTTTGACCGTGAACTTAGTTGAAG 59.478 40.000 0.93 0.00 41.37 3.02
2943 3187 1.234821 TGCCATCTTTGACCGTGAAC 58.765 50.000 0.00 0.00 0.00 3.18
2944 3188 1.606668 GTTGCCATCTTTGACCGTGAA 59.393 47.619 0.00 0.00 0.00 3.18
2945 3189 1.234821 GTTGCCATCTTTGACCGTGA 58.765 50.000 0.00 0.00 0.00 4.35
2946 3190 0.950836 TGTTGCCATCTTTGACCGTG 59.049 50.000 0.00 0.00 0.00 4.94
2948 3192 1.733389 GCATGTTGCCATCTTTGACCG 60.733 52.381 0.00 0.00 37.42 4.79
2949 3193 1.273048 TGCATGTTGCCATCTTTGACC 59.727 47.619 0.00 0.00 44.23 4.02
2950 3194 2.288334 TGTGCATGTTGCCATCTTTGAC 60.288 45.455 0.00 0.00 44.23 3.18
2952 3196 2.063266 GTGTGCATGTTGCCATCTTTG 58.937 47.619 0.00 0.00 44.23 2.77
2955 3199 2.495155 TAGTGTGCATGTTGCCATCT 57.505 45.000 0.00 0.00 44.23 2.90
2956 3200 2.286595 CGATAGTGTGCATGTTGCCATC 60.287 50.000 0.00 0.00 44.23 3.51
2957 3201 1.672363 CGATAGTGTGCATGTTGCCAT 59.328 47.619 0.00 0.00 44.23 4.40
2958 3202 1.085893 CGATAGTGTGCATGTTGCCA 58.914 50.000 0.00 0.00 44.23 4.92
2959 3203 1.328680 CTCGATAGTGTGCATGTTGCC 59.671 52.381 0.00 0.00 39.30 4.52
2960 3204 1.267732 GCTCGATAGTGTGCATGTTGC 60.268 52.381 0.00 0.00 40.14 4.17
2961 3205 1.005662 CGCTCGATAGTGTGCATGTTG 60.006 52.381 0.00 0.00 33.09 3.33
2962 3206 1.280982 CGCTCGATAGTGTGCATGTT 58.719 50.000 0.00 0.00 33.09 2.71
2975 5977 0.464373 AACCCGTACTATCCGCTCGA 60.464 55.000 0.00 0.00 0.00 4.04
3046 6190 4.585581 ACTACCCACGCACACACATATATA 59.414 41.667 0.00 0.00 0.00 0.86
3058 6202 2.093869 GGTCAGATTTACTACCCACGCA 60.094 50.000 0.00 0.00 0.00 5.24
3079 6223 0.324943 CTACAAGGAGGTGGGTGTGG 59.675 60.000 0.00 0.00 0.00 4.17
3094 6238 5.981088 TGTTCACGAGTAATAACCCTACA 57.019 39.130 0.00 0.00 0.00 2.74
3112 6256 0.951558 AGCCCGTTGTGTGATTGTTC 59.048 50.000 0.00 0.00 0.00 3.18
3113 6257 1.336755 GAAGCCCGTTGTGTGATTGTT 59.663 47.619 0.00 0.00 0.00 2.83
3121 6265 0.667993 AATGTGTGAAGCCCGTTGTG 59.332 50.000 0.00 0.00 0.00 3.33
3123 6267 0.664166 GCAATGTGTGAAGCCCGTTG 60.664 55.000 0.00 0.00 0.00 4.10
3127 6271 0.961019 TTGAGCAATGTGTGAAGCCC 59.039 50.000 0.00 0.00 0.00 5.19
3178 8407 3.893200 TGGAGGTACTTCAAAGTTCGAGA 59.107 43.478 7.35 0.00 43.71 4.04
3194 8423 4.783227 AGTCCACACAATACTATTGGAGGT 59.217 41.667 12.48 5.73 37.03 3.85
3274 8503 9.326339 GTTTCGACCTTTTATACAAATTGAGTC 57.674 33.333 0.00 0.00 0.00 3.36
3275 8504 8.013378 CGTTTCGACCTTTTATACAAATTGAGT 58.987 33.333 0.00 0.00 0.00 3.41
3295 8524 7.586300 GGGTTATGACATCAATAATTCGTTTCG 59.414 37.037 0.00 0.00 0.00 3.46
3312 8541 5.337652 GGCTCTGGATAGTATGGGTTATGAC 60.338 48.000 0.00 0.00 0.00 3.06
3482 8820 8.306761 GTCATGTCATTGGAATTTTAGAGGTTT 58.693 33.333 0.00 0.00 0.00 3.27
3483 8821 7.451255 TGTCATGTCATTGGAATTTTAGAGGTT 59.549 33.333 0.00 0.00 0.00 3.50
3484 8822 6.947733 TGTCATGTCATTGGAATTTTAGAGGT 59.052 34.615 0.00 0.00 0.00 3.85
3485 8823 7.395190 TGTCATGTCATTGGAATTTTAGAGG 57.605 36.000 0.00 0.00 0.00 3.69
3486 8824 9.297586 CAATGTCATGTCATTGGAATTTTAGAG 57.702 33.333 27.73 7.12 46.08 2.43
3488 8826 7.546316 TGCAATGTCATGTCATTGGAATTTTAG 59.454 33.333 32.44 14.76 46.99 1.85
3556 8894 2.417243 GCTGCCGGCATTTTTGATTAGT 60.417 45.455 32.87 0.00 41.35 2.24
3558 8896 2.292103 GCTGCCGGCATTTTTGATTA 57.708 45.000 32.87 1.81 41.35 1.75
3573 8911 2.426522 TGTATTTGAGGACACTGCTGC 58.573 47.619 0.00 0.00 0.00 5.25
3574 8912 6.317140 ACATATTGTATTTGAGGACACTGCTG 59.683 38.462 0.00 0.00 0.00 4.41
3575 8913 6.418101 ACATATTGTATTTGAGGACACTGCT 58.582 36.000 0.00 0.00 0.00 4.24
3616 8954 7.924103 ACGCACCTTAAATTAGTTTTTCTTG 57.076 32.000 0.00 0.00 0.00 3.02
3621 8959 8.757789 GCTTTAAACGCACCTTAAATTAGTTTT 58.242 29.630 5.19 0.00 33.27 2.43
3649 8987 4.070009 ACTCATACGTGAACTTTTTCCCC 58.930 43.478 0.00 0.00 33.05 4.81
3653 8991 8.832521 TGTAAATCACTCATACGTGAACTTTTT 58.167 29.630 0.00 0.00 46.00 1.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.