Multiple sequence alignment - TraesCS4A01G320500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G320500 chr4A 100.000 6538 0 0 1 6538 608982186 608988723 0.000000e+00 12074.0
1 TraesCS4A01G320500 chr4A 96.739 92 3 0 4873 4964 24824550 24824459 3.160000e-33 154.0
2 TraesCS4A01G320500 chr5B 93.544 2091 102 14 2809 4881 705801525 705799450 0.000000e+00 3083.0
3 TraesCS4A01G320500 chr5B 90.805 1392 67 23 918 2291 705805675 705804327 0.000000e+00 1805.0
4 TraesCS4A01G320500 chr5B 94.872 624 18 3 4963 5573 705799451 705798829 0.000000e+00 963.0
5 TraesCS4A01G320500 chr5B 93.279 491 26 4 2292 2781 705803797 705803313 0.000000e+00 717.0
6 TraesCS4A01G320500 chr5B 84.091 440 46 15 1 421 705806737 705806303 2.840000e-108 403.0
7 TraesCS4A01G320500 chr5B 82.456 456 67 8 433 881 705806214 705805765 2.860000e-103 387.0
8 TraesCS4A01G320500 chr5B 86.513 304 36 5 4577 4878 530036207 530036507 4.890000e-86 329.0
9 TraesCS4A01G320500 chr5B 90.909 209 15 2 5609 5813 705798831 705798623 1.800000e-70 278.0
10 TraesCS4A01G320500 chr5B 92.727 110 5 3 4879 4987 706167794 706167687 8.780000e-34 156.0
11 TraesCS4A01G320500 chr5D 92.029 2095 100 25 2809 4881 563604818 563602769 0.000000e+00 2881.0
12 TraesCS4A01G320500 chr5D 92.775 1398 49 22 918 2291 563606807 563605438 0.000000e+00 1975.0
13 TraesCS4A01G320500 chr5D 93.830 859 38 9 4963 5813 563602770 563601919 0.000000e+00 1279.0
14 TraesCS4A01G320500 chr5D 94.271 384 13 2 1 383 563607439 563607064 4.400000e-161 579.0
15 TraesCS4A01G320500 chr5D 96.129 155 3 3 729 881 563607060 563606907 3.910000e-62 250.0
16 TraesCS4A01G320500 chr5D 92.233 103 6 2 4873 4975 206601256 206601356 1.900000e-30 145.0
17 TraesCS4A01G320500 chr5D 88.235 85 9 1 325 408 563718824 563718740 4.170000e-17 100.0
18 TraesCS4A01G320500 chr6A 97.111 623 16 1 5835 6455 410901513 410902135 0.000000e+00 1050.0
19 TraesCS4A01G320500 chr6A 93.750 64 3 1 4818 4881 1675499 1675561 1.940000e-15 95.3
20 TraesCS4A01G320500 chr3D 97.115 624 15 2 5835 6455 422743146 422742523 0.000000e+00 1050.0
21 TraesCS4A01G320500 chr3D 97.111 623 16 1 5835 6455 496780411 496779789 0.000000e+00 1050.0
22 TraesCS4A01G320500 chr3A 97.111 623 16 1 5835 6455 91017009 91016387 0.000000e+00 1050.0
23 TraesCS4A01G320500 chrUn 96.955 624 17 1 5834 6455 70285838 70286461 0.000000e+00 1046.0
24 TraesCS4A01G320500 chrUn 88.889 72 6 2 6462 6533 341781303 341781234 3.250000e-13 87.9
25 TraesCS4A01G320500 chr7A 97.101 621 16 1 5837 6455 232384021 232384641 0.000000e+00 1046.0
26 TraesCS4A01G320500 chr7A 95.098 102 2 3 4870 4969 473897586 473897486 2.440000e-34 158.0
27 TraesCS4A01G320500 chr7A 85.542 83 10 1 6451 6533 731264656 731264736 1.170000e-12 86.1
28 TraesCS4A01G320500 chr5A 96.955 624 17 1 5834 6455 602839196 602838573 0.000000e+00 1046.0
29 TraesCS4A01G320500 chr5A 80.192 313 30 4 4577 4878 550274696 550274987 8.590000e-49 206.0
30 TraesCS4A01G320500 chr5A 90.541 74 6 1 6463 6536 45297937 45297865 5.400000e-16 97.1
31 TraesCS4A01G320500 chr1D 96.950 623 17 1 5835 6455 223524573 223523951 0.000000e+00 1044.0
32 TraesCS4A01G320500 chr1D 82.313 294 36 9 4601 4881 202548157 202548447 2.360000e-59 241.0
33 TraesCS4A01G320500 chr1A 96.950 623 17 1 5835 6455 396445692 396446314 0.000000e+00 1044.0
34 TraesCS4A01G320500 chr1A 89.189 74 6 2 6463 6536 58483421 58483350 2.510000e-14 91.6
35 TraesCS4A01G320500 chr7D 88.112 143 14 3 4740 4881 65871662 65871802 4.060000e-37 167.0
36 TraesCS4A01G320500 chr3B 96.842 95 3 0 4871 4965 782115925 782116019 6.790000e-35 159.0
37 TraesCS4A01G320500 chr3B 85.075 134 18 2 4749 4881 6132382 6132250 1.140000e-27 135.0
38 TraesCS4A01G320500 chr3B 89.189 74 7 1 6463 6536 28259694 28259622 2.510000e-14 91.6
39 TraesCS4A01G320500 chr3B 89.333 75 5 2 6463 6536 452283134 452283206 2.510000e-14 91.6
40 TraesCS4A01G320500 chr3B 97.959 49 1 0 4808 4856 191255541 191255589 1.170000e-12 86.1
41 TraesCS4A01G320500 chr4B 98.851 87 1 0 4879 4965 30370063 30369977 8.780000e-34 156.0
42 TraesCS4A01G320500 chr4B 95.000 100 2 3 4866 4964 592354421 592354518 3.160000e-33 154.0
43 TraesCS4A01G320500 chr4B 88.889 72 6 2 6463 6534 3828805 3828736 3.250000e-13 87.9
44 TraesCS4A01G320500 chr2A 97.802 91 1 1 4875 4965 69385951 69386040 8.780000e-34 156.0
45 TraesCS4A01G320500 chr6D 96.774 93 2 1 4879 4970 85039150 85039242 3.160000e-33 154.0
46 TraesCS4A01G320500 chr1B 88.000 75 7 2 6463 6537 24715924 24715852 3.250000e-13 87.9
47 TraesCS4A01G320500 chr7B 85.542 83 10 2 6451 6533 540297436 540297356 1.170000e-12 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G320500 chr4A 608982186 608988723 6537 False 12074.000000 12074 100.000000 1 6538 1 chr4A.!!$F1 6537
1 TraesCS4A01G320500 chr5B 705798623 705806737 8114 True 1090.857143 3083 89.993714 1 5813 7 chr5B.!!$R2 5812
2 TraesCS4A01G320500 chr5D 563601919 563607439 5520 True 1392.800000 2881 93.806800 1 5813 5 chr5D.!!$R2 5812
3 TraesCS4A01G320500 chr6A 410901513 410902135 622 False 1050.000000 1050 97.111000 5835 6455 1 chr6A.!!$F2 620
4 TraesCS4A01G320500 chr3D 422742523 422743146 623 True 1050.000000 1050 97.115000 5835 6455 1 chr3D.!!$R1 620
5 TraesCS4A01G320500 chr3D 496779789 496780411 622 True 1050.000000 1050 97.111000 5835 6455 1 chr3D.!!$R2 620
6 TraesCS4A01G320500 chr3A 91016387 91017009 622 True 1050.000000 1050 97.111000 5835 6455 1 chr3A.!!$R1 620
7 TraesCS4A01G320500 chrUn 70285838 70286461 623 False 1046.000000 1046 96.955000 5834 6455 1 chrUn.!!$F1 621
8 TraesCS4A01G320500 chr7A 232384021 232384641 620 False 1046.000000 1046 97.101000 5837 6455 1 chr7A.!!$F1 618
9 TraesCS4A01G320500 chr5A 602838573 602839196 623 True 1046.000000 1046 96.955000 5834 6455 1 chr5A.!!$R2 621
10 TraesCS4A01G320500 chr1D 223523951 223524573 622 True 1044.000000 1044 96.950000 5835 6455 1 chr1D.!!$R1 620
11 TraesCS4A01G320500 chr1A 396445692 396446314 622 False 1044.000000 1044 96.950000 5835 6455 1 chr1A.!!$F1 620

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
496 596 0.101399 CTCGGTTGAGCGAGCACTAT 59.899 55.0 18.00 0.00 34.96 2.12 F
1079 1262 0.035343 GGAAGGAAGGAAGGAACCGG 60.035 60.0 0.00 0.00 34.73 5.28 F
2050 2256 0.104934 AGTGAGGGAAGGTGAGTGGT 60.105 55.0 0.00 0.00 0.00 4.16 F
2785 3548 0.462581 ATGCGGAACATGACGAGCAT 60.463 50.0 14.21 14.21 37.70 3.79 F
2787 3550 0.855349 GCGGAACATGACGAGCATAG 59.145 55.0 0.00 0.00 34.82 2.23 F
3503 6030 0.917533 ATGCTCCCTGAACATCTGCT 59.082 50.0 0.00 0.00 0.00 4.24 F
4893 7442 0.178970 TATGCTACTCCCTCCGTCCC 60.179 60.0 0.00 0.00 0.00 4.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1336 1521 0.254299 ATGTGGGAGGGGAAAGGGAT 60.254 55.0 0.00 0.00 0.00 3.85 R
2636 3399 0.315251 GAAAGACAAGTGGCTTGGGC 59.685 55.0 12.66 5.22 43.96 5.36 R
3050 5574 0.686112 ACACCCTCAGAGCTAGCCTC 60.686 60.0 12.13 8.54 41.07 4.70 R
4312 6845 0.825410 CAGTGCTCTGCATCCTCTCT 59.175 55.0 2.32 0.00 41.91 3.10 R
4551 7088 0.840288 TCTGGGGGTACACTGCACAT 60.840 55.0 0.00 0.00 0.00 3.21 R
5043 7592 1.122632 TCCTGTGCACCCGGAGTTTA 61.123 55.0 15.69 0.00 0.00 2.01 R
5910 8482 0.321919 GTGCCAGAGCCATGAGTTGA 60.322 55.0 0.00 0.00 38.69 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
171 191 7.992180 ATTTCAGTGAAGTGATGTTTCAAAC 57.008 32.000 5.56 0.00 36.41 2.93
172 192 6.507958 TTCAGTGAAGTGATGTTTCAAACA 57.492 33.333 5.18 5.18 46.94 2.83
285 307 1.993370 GTGAGGAATTCTTCGGTGTCG 59.007 52.381 12.40 0.00 37.82 4.35
409 432 3.827302 CCAGCTATACCGTGGAGAGTAAT 59.173 47.826 0.00 0.00 32.60 1.89
410 433 4.321304 CCAGCTATACCGTGGAGAGTAATG 60.321 50.000 0.00 0.00 32.60 1.90
415 438 5.769484 ATACCGTGGAGAGTAATGTACTG 57.231 43.478 0.00 0.00 39.59 2.74
418 441 4.639310 ACCGTGGAGAGTAATGTACTGTAG 59.361 45.833 0.00 0.00 39.59 2.74
421 444 5.583495 GTGGAGAGTAATGTACTGTAGCTG 58.417 45.833 0.00 0.00 39.59 4.24
422 445 4.098044 TGGAGAGTAATGTACTGTAGCTGC 59.902 45.833 0.00 0.00 39.59 5.25
423 446 4.283678 GAGAGTAATGTACTGTAGCTGCG 58.716 47.826 0.00 0.00 39.59 5.18
429 452 1.340308 TGTACTGTAGCTGCGGTAGGA 60.340 52.381 22.11 10.41 31.58 2.94
430 453 1.955080 GTACTGTAGCTGCGGTAGGAT 59.045 52.381 22.11 0.00 31.58 3.24
431 454 2.359981 ACTGTAGCTGCGGTAGGATA 57.640 50.000 15.29 0.00 0.00 2.59
461 561 9.685828 GTATTTGCATAAACCAGAAACTACAAA 57.314 29.630 0.00 0.00 0.00 2.83
470 570 6.156748 ACCAGAAACTACAAATGGTTTTCC 57.843 37.500 0.00 0.00 41.44 3.13
484 584 0.887387 TTTTCCGCCCTTCTCGGTTG 60.887 55.000 1.22 0.00 46.49 3.77
496 596 0.101399 CTCGGTTGAGCGAGCACTAT 59.899 55.000 18.00 0.00 34.96 2.12
500 600 2.535984 CGGTTGAGCGAGCACTATAAAG 59.464 50.000 0.00 0.00 0.00 1.85
503 603 4.740695 GGTTGAGCGAGCACTATAAAGTAG 59.259 45.833 0.00 0.00 33.48 2.57
505 605 6.459298 GGTTGAGCGAGCACTATAAAGTAGTA 60.459 42.308 0.00 0.00 33.48 1.82
507 607 5.821470 TGAGCGAGCACTATAAAGTAGTACT 59.179 40.000 0.00 0.00 33.48 2.73
510 610 5.562501 GCGAGCACTATAAAGTAGTACTCCC 60.563 48.000 2.58 0.00 35.53 4.30
514 614 6.262720 AGCACTATAAAGTAGTACTCCCTTCG 59.737 42.308 2.58 0.00 33.48 3.79
515 615 6.039159 GCACTATAAAGTAGTACTCCCTTCGT 59.961 42.308 2.58 0.00 33.48 3.85
516 616 7.638134 CACTATAAAGTAGTACTCCCTTCGTC 58.362 42.308 2.58 0.00 33.48 4.20
517 617 6.770303 ACTATAAAGTAGTACTCCCTTCGTCC 59.230 42.308 2.58 0.00 32.84 4.79
518 618 2.433662 AGTAGTACTCCCTTCGTCCC 57.566 55.000 0.00 0.00 0.00 4.46
531 637 0.671251 TCGTCCCACCATTTTGCAAC 59.329 50.000 0.00 0.00 0.00 4.17
538 644 2.036992 CCACCATTTTGCAACCTTAGCA 59.963 45.455 0.00 0.00 40.85 3.49
550 656 5.893255 TGCAACCTTAGCAAGATTATGGAAT 59.107 36.000 0.00 0.00 39.39 3.01
551 657 6.039717 TGCAACCTTAGCAAGATTATGGAATC 59.960 38.462 0.00 0.00 39.39 2.52
555 661 6.543831 ACCTTAGCAAGATTATGGAATCACAC 59.456 38.462 0.87 0.00 43.51 3.82
556 662 6.016777 CCTTAGCAAGATTATGGAATCACACC 60.017 42.308 0.87 0.00 43.51 4.16
557 663 3.879295 AGCAAGATTATGGAATCACACCG 59.121 43.478 0.87 0.00 43.51 4.94
574 680 1.890489 ACCGTTGTGGGGAAAATAAGC 59.110 47.619 0.00 0.00 44.64 3.09
576 682 2.094752 CCGTTGTGGGGAAAATAAGCAG 60.095 50.000 0.00 0.00 0.00 4.24
578 684 3.005367 CGTTGTGGGGAAAATAAGCAGTT 59.995 43.478 0.00 0.00 0.00 3.16
595 701 3.007635 CAGTTCCTCCGTCCCAAAATAC 58.992 50.000 0.00 0.00 0.00 1.89
605 711 3.489785 CGTCCCAAAATACACGAGATAGC 59.510 47.826 0.00 0.00 34.06 2.97
606 712 4.439057 GTCCCAAAATACACGAGATAGCA 58.561 43.478 0.00 0.00 0.00 3.49
616 722 7.932120 ATACACGAGATAGCAAGTTTGTATC 57.068 36.000 0.00 1.49 0.00 2.24
620 726 4.119862 GAGATAGCAAGTTTGTATCGGCA 58.880 43.478 0.00 0.00 31.99 5.69
629 735 3.945285 AGTTTGTATCGGCATAAACCAGG 59.055 43.478 0.00 0.00 34.46 4.45
636 742 1.135803 CGGCATAAACCAGGAACAACG 60.136 52.381 0.00 0.00 0.00 4.10
639 745 3.427503 GGCATAAACCAGGAACAACGATG 60.428 47.826 0.00 0.00 0.00 3.84
644 750 2.661718 ACCAGGAACAACGATGGTTTT 58.338 42.857 0.00 0.00 43.49 2.43
645 751 2.621526 ACCAGGAACAACGATGGTTTTC 59.378 45.455 0.00 0.00 43.49 2.29
647 753 1.877443 AGGAACAACGATGGTTTTCCG 59.123 47.619 19.01 2.88 42.16 4.30
658 764 2.359478 TTTTCCGCCCTTCTCGGC 60.359 61.111 0.00 0.00 46.05 5.54
681 787 2.736197 TGCCTGAGCACTGCAAAAT 58.264 47.368 3.30 0.00 46.52 1.82
686 792 3.829948 CCTGAGCACTGCAAAATACTTG 58.170 45.455 3.30 0.00 0.00 3.16
689 795 4.609947 TGAGCACTGCAAAATACTTGTTG 58.390 39.130 3.30 0.00 0.00 3.33
698 804 2.390225 AATACTTGTTGCCCCACCAA 57.610 45.000 0.00 0.00 0.00 3.67
722 828 8.807581 CAACAAAGTGGTTCTTGAAACTTAATC 58.192 33.333 0.00 0.00 36.40 1.75
724 830 8.695456 ACAAAGTGGTTCTTGAAACTTAATCAT 58.305 29.630 0.00 0.00 36.40 2.45
1072 1255 1.478916 GACTCCGAGGAAGGAAGGAAG 59.521 57.143 0.00 0.00 40.25 3.46
1073 1256 0.827368 CTCCGAGGAAGGAAGGAAGG 59.173 60.000 0.00 0.00 40.25 3.46
1074 1257 0.412244 TCCGAGGAAGGAAGGAAGGA 59.588 55.000 0.00 0.00 37.36 3.36
1075 1258 1.203262 TCCGAGGAAGGAAGGAAGGAA 60.203 52.381 0.00 0.00 37.36 3.36
1076 1259 1.066071 CCGAGGAAGGAAGGAAGGAAC 60.066 57.143 0.00 0.00 0.00 3.62
1077 1260 1.066071 CGAGGAAGGAAGGAAGGAACC 60.066 57.143 0.00 0.00 0.00 3.62
1078 1261 0.984995 AGGAAGGAAGGAAGGAACCG 59.015 55.000 0.00 0.00 34.73 4.44
1079 1262 0.035343 GGAAGGAAGGAAGGAACCGG 60.035 60.000 0.00 0.00 34.73 5.28
1080 1263 0.981943 GAAGGAAGGAAGGAACCGGA 59.018 55.000 9.46 0.00 34.73 5.14
1081 1264 0.984995 AAGGAAGGAAGGAACCGGAG 59.015 55.000 9.46 0.00 34.73 4.63
1082 1265 0.116541 AGGAAGGAAGGAACCGGAGA 59.883 55.000 9.46 0.00 34.73 3.71
1083 1266 0.981943 GGAAGGAAGGAACCGGAGAA 59.018 55.000 9.46 0.00 34.73 2.87
1084 1267 1.066071 GGAAGGAAGGAACCGGAGAAG 60.066 57.143 9.46 0.00 34.73 2.85
1085 1268 0.325272 AAGGAAGGAACCGGAGAAGC 59.675 55.000 9.46 0.00 34.73 3.86
1086 1269 1.078356 GGAAGGAACCGGAGAAGCC 60.078 63.158 9.46 1.08 0.00 4.35
1087 1270 1.078356 GAAGGAACCGGAGAAGCCC 60.078 63.158 9.46 0.00 0.00 5.19
1088 1271 1.838073 GAAGGAACCGGAGAAGCCCA 61.838 60.000 9.46 0.00 0.00 5.36
1089 1272 1.842381 AAGGAACCGGAGAAGCCCAG 61.842 60.000 9.46 0.00 0.00 4.45
1090 1273 2.269241 GAACCGGAGAAGCCCAGG 59.731 66.667 9.46 0.00 0.00 4.45
1091 1274 3.978571 GAACCGGAGAAGCCCAGGC 62.979 68.421 9.46 0.00 42.33 4.85
1114 1297 2.202892 GGGATGAAGGCGACGGTC 60.203 66.667 0.00 0.00 0.00 4.79
1304 1487 0.609131 CAAGCCCCACAACCAGGTAG 60.609 60.000 0.00 0.00 0.00 3.18
1316 1500 2.171003 ACCAGGTAGTACCACGTAACC 58.829 52.381 21.49 0.00 41.95 2.85
1328 1512 0.253020 ACGTAACCAATCCCCTCCCT 60.253 55.000 0.00 0.00 0.00 4.20
1334 1519 2.655914 ACCAATCCCCTCCCTAAAGTT 58.344 47.619 0.00 0.00 0.00 2.66
1336 1521 2.580783 CCAATCCCCTCCCTAAAGTTCA 59.419 50.000 0.00 0.00 0.00 3.18
1338 1523 4.464947 CAATCCCCTCCCTAAAGTTCATC 58.535 47.826 0.00 0.00 0.00 2.92
1376 1562 1.069823 CCCATCTGATTCTCTCCCGTG 59.930 57.143 0.00 0.00 0.00 4.94
1380 1566 1.667154 CTGATTCTCTCCCGTGCCGA 61.667 60.000 0.00 0.00 0.00 5.54
1860 2053 5.068723 TCCTTCAAGGTACCATCTCGATTAC 59.931 44.000 15.94 0.00 36.53 1.89
1872 2065 2.488153 TCTCGATTACGCGATCCATCAT 59.512 45.455 15.93 0.00 39.85 2.45
1882 2075 2.283351 GCGATCCATCATTTTTGCTTGC 59.717 45.455 0.00 0.00 0.00 4.01
1998 2204 7.976712 TGGATCACATATGATTCTGTGGATTA 58.023 34.615 10.38 0.00 46.01 1.75
1999 2205 8.439172 TGGATCACATATGATTCTGTGGATTAA 58.561 33.333 10.38 0.00 46.01 1.40
2003 2209 8.570488 TCACATATGATTCTGTGGATTAATTGC 58.430 33.333 10.38 0.00 42.37 3.56
2004 2210 8.573885 CACATATGATTCTGTGGATTAATTGCT 58.426 33.333 10.38 0.00 39.24 3.91
2005 2211 9.797642 ACATATGATTCTGTGGATTAATTGCTA 57.202 29.630 10.38 0.00 0.00 3.49
2018 2224 8.849168 TGGATTAATTGCTAGTGTTGAATATGG 58.151 33.333 0.00 0.00 0.00 2.74
2019 2225 8.299570 GGATTAATTGCTAGTGTTGAATATGGG 58.700 37.037 0.00 0.00 0.00 4.00
2030 2236 2.260822 TGAATATGGGGGAGCTAGAGC 58.739 52.381 0.00 0.00 42.49 4.09
2050 2256 0.104934 AGTGAGGGAAGGTGAGTGGT 60.105 55.000 0.00 0.00 0.00 4.16
2051 2257 1.149288 AGTGAGGGAAGGTGAGTGGTA 59.851 52.381 0.00 0.00 0.00 3.25
2052 2258 2.188817 GTGAGGGAAGGTGAGTGGTAT 58.811 52.381 0.00 0.00 0.00 2.73
2063 2269 8.364894 GGAAGGTGAGTGGTATTAAAATTTTGT 58.635 33.333 13.76 4.96 0.00 2.83
2066 2272 9.143155 AGGTGAGTGGTATTAAAATTTTGTTCT 57.857 29.630 13.76 2.78 0.00 3.01
2077 2283 1.634702 TTTTGTTCTGCGTGGTTTGC 58.365 45.000 0.00 0.00 0.00 3.68
2078 2284 0.528017 TTTGTTCTGCGTGGTTTGCA 59.472 45.000 0.00 0.00 40.70 4.08
2121 2327 3.117888 CCTAGCCCACACATATGGTTCTT 60.118 47.826 7.80 0.00 38.16 2.52
2131 2337 9.487790 CCACACATATGGTTCTTAATTTGTTTT 57.512 29.630 7.80 0.00 34.77 2.43
2157 2363 5.333339 CCAATGTTTCTCAACTCACTGTACG 60.333 44.000 0.00 0.00 33.58 3.67
2158 2364 3.713288 TGTTTCTCAACTCACTGTACGG 58.287 45.455 0.00 0.00 33.58 4.02
2211 2417 5.662674 ACTTGGGAAGAGTGTAGTGTATC 57.337 43.478 0.00 0.00 0.00 2.24
2295 2503 8.494433 ACATTATAAAATCAGGAGCTAACCAGA 58.506 33.333 0.00 0.00 0.00 3.86
2296 2504 8.997323 CATTATAAAATCAGGAGCTAACCAGAG 58.003 37.037 0.00 0.00 0.00 3.35
2297 2505 6.814954 ATAAAATCAGGAGCTAACCAGAGA 57.185 37.500 0.00 0.00 0.00 3.10
2303 3066 4.348168 TCAGGAGCTAACCAGAGAAAAACT 59.652 41.667 0.00 0.00 0.00 2.66
2342 3105 4.640771 ATTTGCTTGTCCTAACCAGAGA 57.359 40.909 0.00 0.00 0.00 3.10
2373 3136 1.202188 GGCGCCTGAAGCTCATTTAAC 60.202 52.381 22.15 0.00 40.39 2.01
2375 3138 2.729156 GCGCCTGAAGCTCATTTAACAC 60.729 50.000 0.00 0.00 40.39 3.32
2430 3193 4.460382 CCAGAGTTATGCAGTCCAAACATT 59.540 41.667 0.00 0.00 0.00 2.71
2437 3200 8.752187 AGTTATGCAGTCCAAACATTAATCATT 58.248 29.630 0.00 0.00 0.00 2.57
2483 3246 2.493713 CGTTGAGCGAATAGGCTAGT 57.506 50.000 0.00 0.00 44.93 2.57
2488 3251 2.956333 TGAGCGAATAGGCTAGTTGCTA 59.044 45.455 30.58 18.45 42.98 3.49
2521 3284 1.066573 CACAGTTTCAGAGAGCGGGAT 60.067 52.381 0.00 0.00 0.00 3.85
2560 3323 2.280628 GTGTTCAACCGATGGATCCTC 58.719 52.381 14.23 7.19 0.00 3.71
2561 3324 1.209504 TGTTCAACCGATGGATCCTCC 59.790 52.381 14.23 3.56 36.96 4.30
2562 3325 1.486726 GTTCAACCGATGGATCCTCCT 59.513 52.381 14.23 0.00 37.46 3.69
2583 3346 3.079960 GCATGAGCACATTCAATCCAG 57.920 47.619 0.00 0.00 41.58 3.86
2584 3347 2.798499 GCATGAGCACATTCAATCCAGC 60.798 50.000 0.00 0.00 41.58 4.85
2602 3365 4.703575 TCCAGCATCTTCATCCAGAAAAAG 59.296 41.667 0.00 0.00 35.40 2.27
2621 3384 8.364894 AGAAAAAGGTAAATACGCAAGGAAATT 58.635 29.630 0.00 0.00 46.39 1.82
2634 3397 2.670939 AGGAAATTTCATAGCCAGGGC 58.329 47.619 19.49 0.97 42.33 5.19
2684 3447 1.821216 ATAGAAACACCGTTGCCAGG 58.179 50.000 0.00 0.00 0.00 4.45
2685 3448 0.887387 TAGAAACACCGTTGCCAGGC 60.887 55.000 3.66 3.66 0.00 4.85
2702 3465 2.872245 CAGGCGTACAAGATGTAATGGG 59.128 50.000 0.00 0.00 34.21 4.00
2715 3478 5.590259 AGATGTAATGGGACGAAAATTCCAG 59.410 40.000 0.00 0.00 34.45 3.86
2729 3492 1.210538 TTCCAGCTGAGAGCCATCAT 58.789 50.000 17.39 0.00 43.77 2.45
2758 3521 3.452264 CCACCAGAATGATCCAGTACAGA 59.548 47.826 0.00 0.00 39.69 3.41
2783 3546 3.799753 ATGCGGAACATGACGAGC 58.200 55.556 0.00 0.03 37.70 5.03
2784 3547 1.079197 ATGCGGAACATGACGAGCA 60.079 52.632 0.00 6.43 37.70 4.26
2785 3548 0.462581 ATGCGGAACATGACGAGCAT 60.463 50.000 14.21 14.21 37.70 3.79
2787 3550 0.855349 GCGGAACATGACGAGCATAG 59.145 55.000 0.00 0.00 34.82 2.23
2789 3552 2.543031 GCGGAACATGACGAGCATAGTA 60.543 50.000 0.00 0.00 34.82 1.82
2791 3554 3.670523 CGGAACATGACGAGCATAGTATG 59.329 47.826 5.73 5.73 34.82 2.39
2793 3556 4.920340 GGAACATGACGAGCATAGTATGAG 59.080 45.833 14.52 6.72 34.82 2.90
2794 3557 3.906998 ACATGACGAGCATAGTATGAGC 58.093 45.455 14.52 3.74 34.82 4.26
2795 3558 2.688364 TGACGAGCATAGTATGAGCG 57.312 50.000 14.52 16.58 35.46 5.03
2797 3560 2.357952 TGACGAGCATAGTATGAGCGTT 59.642 45.455 22.87 12.52 40.08 4.84
2800 3563 3.813724 ACGAGCATAGTATGAGCGTTCTA 59.186 43.478 18.90 0.00 37.99 2.10
2801 3564 4.275196 ACGAGCATAGTATGAGCGTTCTAA 59.725 41.667 18.90 0.00 37.99 2.10
2802 3565 4.848841 CGAGCATAGTATGAGCGTTCTAAG 59.151 45.833 14.52 0.00 0.00 2.18
2803 3566 5.334182 CGAGCATAGTATGAGCGTTCTAAGA 60.334 44.000 14.52 0.00 0.00 2.10
2804 3567 6.392625 AGCATAGTATGAGCGTTCTAAGAA 57.607 37.500 14.52 0.00 0.00 2.52
2805 3568 6.987386 AGCATAGTATGAGCGTTCTAAGAAT 58.013 36.000 14.52 0.00 0.00 2.40
2807 3570 8.744652 AGCATAGTATGAGCGTTCTAAGAATAT 58.255 33.333 14.52 0.00 0.00 1.28
2967 5491 6.378280 CACAAAGCCCTTTATAGTGAATTCCT 59.622 38.462 2.27 2.47 30.31 3.36
3155 5679 6.890268 ACTGAAGGTGTAACTTTTCCTTTCTT 59.110 34.615 0.00 0.00 35.70 2.52
3200 5724 5.319043 TGAAGGAATTGGGTCTGTTTAGT 57.681 39.130 0.00 0.00 0.00 2.24
3342 5866 1.954362 CTTGAGGAGGCAGAGGGACG 61.954 65.000 0.00 0.00 0.00 4.79
3396 5920 1.911357 AGATGTGGATTGGCTGAGTCA 59.089 47.619 0.00 0.00 0.00 3.41
3500 6027 1.134159 GCTGATGCTCCCTGAACATCT 60.134 52.381 8.45 0.00 40.66 2.90
3503 6030 0.917533 ATGCTCCCTGAACATCTGCT 59.082 50.000 0.00 0.00 0.00 4.24
3617 6147 8.308207 TGTGCGTATATTTGCCTAGACATTATA 58.692 33.333 0.00 0.00 0.00 0.98
3654 6184 8.417273 TGTATTTCCGATGGTAGATGAGATAA 57.583 34.615 0.00 0.00 0.00 1.75
3750 6280 8.473219 TCTAGTATTGGATGAGATGCATGATAC 58.527 37.037 2.46 0.00 37.34 2.24
3751 6281 7.012661 AGTATTGGATGAGATGCATGATACA 57.987 36.000 2.46 0.00 37.34 2.29
3752 6282 7.631007 AGTATTGGATGAGATGCATGATACAT 58.369 34.615 2.46 4.06 37.34 2.29
3753 6283 8.765517 AGTATTGGATGAGATGCATGATACATA 58.234 33.333 2.46 0.00 37.34 2.29
3754 6284 9.557061 GTATTGGATGAGATGCATGATACATAT 57.443 33.333 2.46 0.72 37.34 1.78
3828 6358 4.256920 AGCAGCAAATTGTCGTCTAATCT 58.743 39.130 0.00 0.00 0.00 2.40
3829 6359 4.331168 AGCAGCAAATTGTCGTCTAATCTC 59.669 41.667 0.00 0.00 0.00 2.75
3917 6447 2.233431 TGTTGTTGGGGATAATTGCTGC 59.767 45.455 0.00 0.00 0.00 5.25
3956 6486 0.954452 GTGCCAAAAGTGCTACTGCT 59.046 50.000 0.00 0.00 40.48 4.24
3999 6529 5.516996 TGCGTCTTACGGACATATCTTAAG 58.483 41.667 0.00 0.00 44.70 1.85
4001 6531 5.506982 GCGTCTTACGGACATATCTTAAGGT 60.507 44.000 1.85 0.00 44.70 3.50
4002 6532 6.141462 CGTCTTACGGACATATCTTAAGGTC 58.859 44.000 1.85 1.98 44.70 3.85
4005 6535 7.648510 GTCTTACGGACATATCTTAAGGTCTTG 59.351 40.741 1.85 0.00 43.94 3.02
4024 6556 6.294731 GGTCTTGTTTTTGCTGTCTATGGAAT 60.295 38.462 0.00 0.00 0.00 3.01
4025 6557 7.094377 GGTCTTGTTTTTGCTGTCTATGGAATA 60.094 37.037 0.00 0.00 0.00 1.75
4050 6582 3.318313 CTGGGGGTAGTCCAACTGATAT 58.682 50.000 0.00 0.00 37.22 1.63
4128 6660 6.746120 AGGAAAATCTCATAGCAAATGCATC 58.254 36.000 8.28 0.00 45.16 3.91
4132 6664 8.958119 AAAATCTCATAGCAAATGCATCAAAT 57.042 26.923 8.28 0.00 45.16 2.32
4183 6715 8.011844 ACAGATAGAGACAATAATGTAGTGCA 57.988 34.615 0.00 0.00 40.74 4.57
4194 6726 7.121759 ACAATAATGTAGTGCAGCAAGAGAATT 59.878 33.333 0.00 0.00 38.24 2.17
4195 6727 5.972107 AATGTAGTGCAGCAAGAGAATTT 57.028 34.783 0.00 0.00 0.00 1.82
4197 6729 5.772825 TGTAGTGCAGCAAGAGAATTTTT 57.227 34.783 0.00 0.00 0.00 1.94
4203 6735 7.940850 AGTGCAGCAAGAGAATTTTTAACTTA 58.059 30.769 0.00 0.00 0.00 2.24
4230 6762 4.846779 TGTGGTTTATCTTTGTGAAGCC 57.153 40.909 0.00 0.00 32.75 4.35
4244 6777 2.101783 TGAAGCCCAATTGCTATGGTG 58.898 47.619 0.00 0.00 41.80 4.17
4312 6845 3.949113 GGGCCTGAAATACGGTGAAATAA 59.051 43.478 0.84 0.00 0.00 1.40
4350 6883 3.694566 ACTGTCTTCCTGTGGTGTTTTTC 59.305 43.478 0.00 0.00 0.00 2.29
4389 6922 4.721776 AGGTCTGCAAATAGTAATCCTCCA 59.278 41.667 0.00 0.00 0.00 3.86
4424 6960 5.354234 CCATTGTCCCTTGTACATGTTCTAC 59.646 44.000 2.30 0.00 0.00 2.59
4459 6995 9.537192 TCGATTTTTGTAAGAACTAGTCTTCAA 57.463 29.630 9.83 10.72 43.49 2.69
4477 7014 8.400947 AGTCTTCAAAACATCATTATCCAATCG 58.599 33.333 0.00 0.00 0.00 3.34
4594 7131 0.682292 TGTATCTGGTGCAACGGTGA 59.318 50.000 11.12 2.14 38.12 4.02
4655 7202 6.733145 TGCAAAAACTTCCCAAAATAAATGC 58.267 32.000 0.00 0.00 0.00 3.56
4661 7208 5.705902 ACTTCCCAAAATAAATGCGTACAC 58.294 37.500 0.00 0.00 0.00 2.90
4671 7218 2.873170 ATGCGTACACGAACACAATG 57.127 45.000 5.84 0.00 43.02 2.82
4687 7234 7.436376 CGAACACAATGTATGTCTATCATGTCT 59.564 37.037 0.00 0.00 41.46 3.41
4690 7237 9.534565 ACACAATGTATGTCTATCATGTCTTAC 57.465 33.333 0.00 0.00 41.46 2.34
4882 7431 9.884636 TTTGTAACATGTTAGATGTATGCTACT 57.115 29.630 18.56 0.00 29.38 2.57
4883 7432 9.529325 TTGTAACATGTTAGATGTATGCTACTC 57.471 33.333 18.56 2.78 29.38 2.59
4884 7433 8.141909 TGTAACATGTTAGATGTATGCTACTCC 58.858 37.037 18.56 2.17 29.38 3.85
4885 7434 6.102897 ACATGTTAGATGTATGCTACTCCC 57.897 41.667 0.00 0.00 0.00 4.30
4886 7435 5.841237 ACATGTTAGATGTATGCTACTCCCT 59.159 40.000 0.00 0.00 0.00 4.20
4887 7436 6.015010 ACATGTTAGATGTATGCTACTCCCTC 60.015 42.308 0.00 0.00 0.00 4.30
4888 7437 4.833380 TGTTAGATGTATGCTACTCCCTCC 59.167 45.833 0.00 0.00 0.00 4.30
4889 7438 2.520069 AGATGTATGCTACTCCCTCCG 58.480 52.381 0.00 0.00 0.00 4.63
4890 7439 2.158445 AGATGTATGCTACTCCCTCCGT 60.158 50.000 0.00 0.00 0.00 4.69
4891 7440 1.688772 TGTATGCTACTCCCTCCGTC 58.311 55.000 0.00 0.00 0.00 4.79
4892 7441 0.960286 GTATGCTACTCCCTCCGTCC 59.040 60.000 0.00 0.00 0.00 4.79
4893 7442 0.178970 TATGCTACTCCCTCCGTCCC 60.179 60.000 0.00 0.00 0.00 4.46
4894 7443 2.043248 GCTACTCCCTCCGTCCCA 60.043 66.667 0.00 0.00 0.00 4.37
4895 7444 1.684734 GCTACTCCCTCCGTCCCAA 60.685 63.158 0.00 0.00 0.00 4.12
4896 7445 1.262640 GCTACTCCCTCCGTCCCAAA 61.263 60.000 0.00 0.00 0.00 3.28
4897 7446 1.272807 CTACTCCCTCCGTCCCAAAA 58.727 55.000 0.00 0.00 0.00 2.44
4898 7447 1.838077 CTACTCCCTCCGTCCCAAAAT 59.162 52.381 0.00 0.00 0.00 1.82
4899 7448 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
4900 7449 2.488836 ACTCCCTCCGTCCCAAAATAT 58.511 47.619 0.00 0.00 0.00 1.28
4901 7450 3.660959 ACTCCCTCCGTCCCAAAATATA 58.339 45.455 0.00 0.00 0.00 0.86
4902 7451 4.042174 ACTCCCTCCGTCCCAAAATATAA 58.958 43.478 0.00 0.00 0.00 0.98
4903 7452 4.102681 ACTCCCTCCGTCCCAAAATATAAG 59.897 45.833 0.00 0.00 0.00 1.73
4904 7453 4.300345 TCCCTCCGTCCCAAAATATAAGA 58.700 43.478 0.00 0.00 0.00 2.10
4905 7454 4.722781 TCCCTCCGTCCCAAAATATAAGAA 59.277 41.667 0.00 0.00 0.00 2.52
4906 7455 4.820173 CCCTCCGTCCCAAAATATAAGAAC 59.180 45.833 0.00 0.00 0.00 3.01
4907 7456 4.510340 CCTCCGTCCCAAAATATAAGAACG 59.490 45.833 0.00 0.00 0.00 3.95
4908 7457 5.088680 TCCGTCCCAAAATATAAGAACGT 57.911 39.130 0.00 0.00 0.00 3.99
4909 7458 5.490159 TCCGTCCCAAAATATAAGAACGTT 58.510 37.500 0.00 0.00 0.00 3.99
4910 7459 5.939296 TCCGTCCCAAAATATAAGAACGTTT 59.061 36.000 0.46 0.00 0.00 3.60
4911 7460 6.430616 TCCGTCCCAAAATATAAGAACGTTTT 59.569 34.615 0.46 0.00 0.00 2.43
4912 7461 7.040548 TCCGTCCCAAAATATAAGAACGTTTTT 60.041 33.333 9.22 9.22 0.00 1.94
4913 7462 8.235905 CCGTCCCAAAATATAAGAACGTTTTTA 58.764 33.333 13.02 13.02 0.00 1.52
4914 7463 9.609950 CGTCCCAAAATATAAGAACGTTTTTAA 57.390 29.630 14.41 5.85 0.00 1.52
4940 7489 6.467723 CTAGCATAGTGTCAAAAACGTTCT 57.532 37.500 0.00 0.00 32.85 3.01
4941 7490 5.751243 AGCATAGTGTCAAAAACGTTCTT 57.249 34.783 0.00 0.00 0.00 2.52
4942 7491 6.854496 AGCATAGTGTCAAAAACGTTCTTA 57.146 33.333 0.00 0.00 0.00 2.10
4943 7492 7.435068 AGCATAGTGTCAAAAACGTTCTTAT 57.565 32.000 0.00 0.00 0.00 1.73
4944 7493 8.542497 AGCATAGTGTCAAAAACGTTCTTATA 57.458 30.769 0.00 0.00 0.00 0.98
4945 7494 9.162764 AGCATAGTGTCAAAAACGTTCTTATAT 57.837 29.630 0.00 0.00 0.00 0.86
4946 7495 9.769093 GCATAGTGTCAAAAACGTTCTTATATT 57.231 29.630 0.00 0.00 0.00 1.28
4950 7499 8.504005 AGTGTCAAAAACGTTCTTATATTCTGG 58.496 33.333 0.00 0.00 0.00 3.86
4951 7500 7.749126 GTGTCAAAAACGTTCTTATATTCTGGG 59.251 37.037 0.00 0.00 0.00 4.45
4952 7501 7.662258 TGTCAAAAACGTTCTTATATTCTGGGA 59.338 33.333 0.00 0.00 0.00 4.37
4953 7502 7.961283 GTCAAAAACGTTCTTATATTCTGGGAC 59.039 37.037 0.00 0.00 0.00 4.46
4954 7503 7.881232 TCAAAAACGTTCTTATATTCTGGGACT 59.119 33.333 0.00 0.00 0.00 3.85
4955 7504 7.611213 AAAACGTTCTTATATTCTGGGACTG 57.389 36.000 0.00 0.00 0.00 3.51
4956 7505 6.540438 AACGTTCTTATATTCTGGGACTGA 57.460 37.500 0.00 0.00 33.53 3.41
4957 7506 6.150396 ACGTTCTTATATTCTGGGACTGAG 57.850 41.667 0.00 0.00 37.65 3.35
4958 7507 5.069251 ACGTTCTTATATTCTGGGACTGAGG 59.931 44.000 0.00 0.00 37.65 3.86
4959 7508 5.509840 CGTTCTTATATTCTGGGACTGAGGG 60.510 48.000 0.00 0.00 37.65 4.30
4960 7509 5.418692 TCTTATATTCTGGGACTGAGGGA 57.581 43.478 0.00 0.00 37.65 4.20
4961 7510 5.398236 TCTTATATTCTGGGACTGAGGGAG 58.602 45.833 0.00 0.00 37.65 4.30
4962 7511 3.715648 ATATTCTGGGACTGAGGGAGT 57.284 47.619 0.00 0.00 37.65 3.85
4963 7512 4.834406 ATATTCTGGGACTGAGGGAGTA 57.166 45.455 0.00 0.00 37.65 2.59
4970 7519 3.775316 TGGGACTGAGGGAGTATTTCTTC 59.225 47.826 0.00 0.00 33.83 2.87
5043 7592 0.902984 TCGGTCCACTGGTAGCACAT 60.903 55.000 0.00 0.00 0.00 3.21
5066 7615 1.610967 TCCGGGTGCACAGGATACA 60.611 57.895 23.98 7.26 41.41 2.29
5192 7741 6.690194 ACAGGTATGCTTTTTGATCTGATC 57.310 37.500 10.72 10.72 0.00 2.92
5333 7894 4.749310 CAGCGAGCAAGCGGGAGT 62.749 66.667 0.00 0.00 43.00 3.85
5497 8063 2.212652 TGGCGATGCTATGACATGAAC 58.787 47.619 0.00 0.00 0.00 3.18
5511 8077 6.801539 TGACATGAACATGAGGTTTAAGTC 57.198 37.500 19.56 3.70 41.40 3.01
5594 8160 2.351738 GCTTTTCTTTCGGACACCCATG 60.352 50.000 0.00 0.00 0.00 3.66
5595 8161 2.649531 TTTCTTTCGGACACCCATGT 57.350 45.000 0.00 0.00 43.71 3.21
5638 8207 1.206878 TCCTGTGGACATGGAGGATG 58.793 55.000 0.00 0.00 38.15 3.51
5645 8214 1.055040 GACATGGAGGATGCCTAGCT 58.945 55.000 0.00 0.00 35.15 3.32
5664 8233 6.376018 CCTAGCTTACCTATCTCATCAGTACC 59.624 46.154 0.00 0.00 0.00 3.34
5713 8282 7.885399 ACTAAATCTCAGGGAAATGCCATATAC 59.115 37.037 0.00 0.00 38.95 1.47
5735 8304 2.795960 TCCAGGGCTAGGTAGGAGTTAT 59.204 50.000 0.00 0.00 0.00 1.89
5776 8346 5.760743 GGTGAGGTAGGAATTATCTTCTTGC 59.239 44.000 0.00 0.00 0.00 4.01
5794 8364 1.587547 GCCTGGAGCAATGCTAGTAC 58.412 55.000 8.12 0.00 39.88 2.73
5798 8368 1.822371 TGGAGCAATGCTAGTACGACA 59.178 47.619 8.12 0.00 39.88 4.35
5816 8386 5.487552 CGACACATCGTAAATATCTGCTC 57.512 43.478 0.00 0.00 43.66 4.26
5817 8387 4.383052 CGACACATCGTAAATATCTGCTCC 59.617 45.833 0.00 0.00 43.66 4.70
5818 8388 4.632153 ACACATCGTAAATATCTGCTCCC 58.368 43.478 0.00 0.00 0.00 4.30
5819 8389 4.345257 ACACATCGTAAATATCTGCTCCCT 59.655 41.667 0.00 0.00 0.00 4.20
5820 8390 4.926238 CACATCGTAAATATCTGCTCCCTC 59.074 45.833 0.00 0.00 0.00 4.30
5821 8391 4.835615 ACATCGTAAATATCTGCTCCCTCT 59.164 41.667 0.00 0.00 0.00 3.69
5822 8392 6.010850 ACATCGTAAATATCTGCTCCCTCTA 58.989 40.000 0.00 0.00 0.00 2.43
5823 8393 5.961396 TCGTAAATATCTGCTCCCTCTAC 57.039 43.478 0.00 0.00 0.00 2.59
5824 8394 4.765856 TCGTAAATATCTGCTCCCTCTACC 59.234 45.833 0.00 0.00 0.00 3.18
5825 8395 4.082136 CGTAAATATCTGCTCCCTCTACCC 60.082 50.000 0.00 0.00 0.00 3.69
5826 8396 3.933239 AATATCTGCTCCCTCTACCCT 57.067 47.619 0.00 0.00 0.00 4.34
5827 8397 2.685106 TATCTGCTCCCTCTACCCTG 57.315 55.000 0.00 0.00 0.00 4.45
5828 8398 0.639392 ATCTGCTCCCTCTACCCTGT 59.361 55.000 0.00 0.00 0.00 4.00
5829 8399 1.305886 TCTGCTCCCTCTACCCTGTA 58.694 55.000 0.00 0.00 0.00 2.74
5830 8400 1.644337 TCTGCTCCCTCTACCCTGTAA 59.356 52.381 0.00 0.00 0.00 2.41
5831 8401 2.247635 TCTGCTCCCTCTACCCTGTAAT 59.752 50.000 0.00 0.00 0.00 1.89
5832 8402 2.366916 CTGCTCCCTCTACCCTGTAATG 59.633 54.545 0.00 0.00 0.00 1.90
5869 8439 4.099419 ACAACAAAGCCTTTAGTCCCAAAG 59.901 41.667 0.00 0.00 35.65 2.77
5910 8482 4.780815 TGAAACCCATAAGATCTCGCAAT 58.219 39.130 0.00 0.00 0.00 3.56
6002 8574 3.525862 ACTCCAATCCTTCAGGTCTCTT 58.474 45.455 0.00 0.00 36.34 2.85
6036 8608 5.363868 TCCTCTCATGTCAAATTCGGTCTAT 59.636 40.000 0.00 0.00 0.00 1.98
6090 8662 1.878522 CGTCCGCTATGCACTGGAC 60.879 63.158 15.07 15.07 38.12 4.02
6132 8704 4.736611 ATATGCCCAAACCATCTCAGAT 57.263 40.909 0.00 0.00 0.00 2.90
6209 8781 2.108168 TCATTCCGGACTCGATCCTTT 58.892 47.619 1.83 0.00 46.69 3.11
6212 8784 1.848652 TCCGGACTCGATCCTTTCTT 58.151 50.000 0.00 0.00 46.69 2.52
6319 8891 0.951525 CCGTACAACATTGCGGGTCA 60.952 55.000 0.00 0.00 40.45 4.02
6338 8910 0.611714 AAACCGCCGTCCTGTAGAAT 59.388 50.000 0.00 0.00 0.00 2.40
6393 8965 1.353694 AGAGAATGCCAGAAGCTTGGT 59.646 47.619 2.10 0.00 44.23 3.67
6450 9022 3.885297 CACATCTTCATCAATACCCCCAC 59.115 47.826 0.00 0.00 0.00 4.61
6455 9027 1.010793 TCATCAATACCCCCACCCTCT 59.989 52.381 0.00 0.00 0.00 3.69
6456 9028 2.251605 TCATCAATACCCCCACCCTCTA 59.748 50.000 0.00 0.00 0.00 2.43
6457 9029 2.185663 TCAATACCCCCACCCTCTAC 57.814 55.000 0.00 0.00 0.00 2.59
6458 9030 1.137697 CAATACCCCCACCCTCTACC 58.862 60.000 0.00 0.00 0.00 3.18
6459 9031 0.029371 AATACCCCCACCCTCTACCC 60.029 60.000 0.00 0.00 0.00 3.69
6460 9032 0.939961 ATACCCCCACCCTCTACCCT 60.940 60.000 0.00 0.00 0.00 4.34
6461 9033 1.893588 TACCCCCACCCTCTACCCTG 61.894 65.000 0.00 0.00 0.00 4.45
6462 9034 2.454941 CCCCACCCTCTACCCTGT 59.545 66.667 0.00 0.00 0.00 4.00
6463 9035 1.707827 CCCCACCCTCTACCCTGTA 59.292 63.158 0.00 0.00 0.00 2.74
6464 9036 0.043637 CCCCACCCTCTACCCTGTAA 59.956 60.000 0.00 0.00 0.00 2.41
6465 9037 1.345112 CCCCACCCTCTACCCTGTAAT 60.345 57.143 0.00 0.00 0.00 1.89
6466 9038 1.768870 CCCACCCTCTACCCTGTAATG 59.231 57.143 0.00 0.00 0.00 1.90
6467 9039 2.478292 CCACCCTCTACCCTGTAATGT 58.522 52.381 0.00 0.00 0.00 2.71
6468 9040 3.631605 CCCACCCTCTACCCTGTAATGTA 60.632 52.174 0.00 0.00 0.00 2.29
6469 9041 4.035112 CCACCCTCTACCCTGTAATGTAA 58.965 47.826 0.00 0.00 0.00 2.41
6470 9042 4.101119 CCACCCTCTACCCTGTAATGTAAG 59.899 50.000 0.00 0.00 0.00 2.34
6471 9043 4.960469 CACCCTCTACCCTGTAATGTAAGA 59.040 45.833 0.00 0.00 0.00 2.10
6472 9044 4.961099 ACCCTCTACCCTGTAATGTAAGAC 59.039 45.833 0.00 0.00 0.00 3.01
6473 9045 4.960469 CCCTCTACCCTGTAATGTAAGACA 59.040 45.833 0.00 0.00 0.00 3.41
6474 9046 5.069251 CCCTCTACCCTGTAATGTAAGACAG 59.931 48.000 0.00 0.00 42.29 3.51
6475 9047 5.657302 CCTCTACCCTGTAATGTAAGACAGT 59.343 44.000 1.72 0.00 41.28 3.55
6476 9048 6.154706 CCTCTACCCTGTAATGTAAGACAGTT 59.845 42.308 1.72 0.00 41.28 3.16
6477 9049 7.310485 CCTCTACCCTGTAATGTAAGACAGTTT 60.310 40.741 1.72 0.00 41.28 2.66
6478 9050 7.970102 TCTACCCTGTAATGTAAGACAGTTTT 58.030 34.615 1.72 0.00 41.28 2.43
6479 9051 8.434392 TCTACCCTGTAATGTAAGACAGTTTTT 58.566 33.333 1.72 0.00 41.28 1.94
6503 9075 8.420374 TTTTTACACTGTTGTTGTGTCAAAAA 57.580 26.923 13.24 14.14 44.24 1.94
6528 9100 4.872664 GTCTTACATTATGAGACGGAGGG 58.127 47.826 0.00 0.00 34.53 4.30
6529 9101 3.895656 TCTTACATTATGAGACGGAGGGG 59.104 47.826 0.00 0.00 0.00 4.79
6530 9102 1.424638 ACATTATGAGACGGAGGGGG 58.575 55.000 0.00 0.00 0.00 5.40
6531 9103 1.344087 ACATTATGAGACGGAGGGGGT 60.344 52.381 0.00 0.00 0.00 4.95
6532 9104 2.090943 ACATTATGAGACGGAGGGGGTA 60.091 50.000 0.00 0.00 0.00 3.69
6533 9105 3.173965 CATTATGAGACGGAGGGGGTAT 58.826 50.000 0.00 0.00 0.00 2.73
6534 9106 3.339713 TTATGAGACGGAGGGGGTATT 57.660 47.619 0.00 0.00 0.00 1.89
6535 9107 2.191981 ATGAGACGGAGGGGGTATTT 57.808 50.000 0.00 0.00 0.00 1.40
6536 9108 2.852714 TGAGACGGAGGGGGTATTTA 57.147 50.000 0.00 0.00 0.00 1.40
6537 9109 2.674420 TGAGACGGAGGGGGTATTTAG 58.326 52.381 0.00 0.00 0.00 1.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
118 138 4.231718 ACGTTCACCATGCGTTAAAAAT 57.768 36.364 0.00 0.00 35.11 1.82
126 146 5.568747 ATTTTTAAAACGTTCACCATGCG 57.431 34.783 0.00 0.00 0.00 4.73
206 227 8.467402 AATGTTACATTCGTTTGTTTTTCACA 57.533 26.923 4.56 0.00 0.00 3.58
219 240 5.704888 TGGCCAACTAAAATGTTACATTCG 58.295 37.500 11.24 5.87 0.00 3.34
285 307 1.334239 CGTCTAGGTCTCGCATGTAGC 60.334 57.143 0.00 0.00 40.87 3.58
320 342 3.117888 CCTTGTATAGTTGGACATGGCCT 60.118 47.826 21.02 0.00 35.03 5.19
384 407 0.032678 CTCCACGGTATAGCTGGCTG 59.967 60.000 5.25 0.00 0.00 4.85
396 419 4.497674 GCTACAGTACATTACTCTCCACGG 60.498 50.000 0.00 0.00 36.76 4.94
409 432 1.100510 CCTACCGCAGCTACAGTACA 58.899 55.000 0.00 0.00 0.00 2.90
410 433 1.386533 TCCTACCGCAGCTACAGTAC 58.613 55.000 0.00 0.00 0.00 2.73
415 438 4.985538 ACATATATCCTACCGCAGCTAC 57.014 45.455 0.00 0.00 0.00 3.58
418 441 5.006746 GCAAATACATATATCCTACCGCAGC 59.993 44.000 0.00 0.00 0.00 5.25
421 444 8.657074 TTATGCAAATACATATATCCTACCGC 57.343 34.615 0.00 0.00 32.71 5.68
461 561 0.676782 CGAGAAGGGCGGAAAACCAT 60.677 55.000 0.00 0.00 0.00 3.55
470 570 2.815647 GCTCAACCGAGAAGGGCG 60.816 66.667 0.00 0.00 46.96 6.13
484 584 6.303021 AGTACTACTTTATAGTGCTCGCTC 57.697 41.667 0.00 0.00 36.04 5.03
496 596 4.263905 TGGGACGAAGGGAGTACTACTTTA 60.264 45.833 1.79 0.00 0.00 1.85
500 600 1.747924 GTGGGACGAAGGGAGTACTAC 59.252 57.143 0.00 0.00 0.00 2.73
503 603 0.901580 TGGTGGGACGAAGGGAGTAC 60.902 60.000 0.00 0.00 0.00 2.73
505 605 0.840722 AATGGTGGGACGAAGGGAGT 60.841 55.000 0.00 0.00 0.00 3.85
507 607 0.774908 AAAATGGTGGGACGAAGGGA 59.225 50.000 0.00 0.00 0.00 4.20
510 610 0.958091 TGCAAAATGGTGGGACGAAG 59.042 50.000 0.00 0.00 0.00 3.79
514 614 1.047801 AGGTTGCAAAATGGTGGGAC 58.952 50.000 0.00 0.00 0.00 4.46
515 615 1.799933 AAGGTTGCAAAATGGTGGGA 58.200 45.000 0.00 0.00 0.00 4.37
516 616 2.612721 GCTAAGGTTGCAAAATGGTGGG 60.613 50.000 0.00 0.00 0.00 4.61
517 617 2.036992 TGCTAAGGTTGCAAAATGGTGG 59.963 45.455 0.00 0.00 37.51 4.61
518 618 3.383620 TGCTAAGGTTGCAAAATGGTG 57.616 42.857 0.00 0.00 37.51 4.17
531 637 6.016777 GGTGTGATTCCATAATCTTGCTAAGG 60.017 42.308 0.00 0.00 41.83 2.69
538 644 5.253330 ACAACGGTGTGATTCCATAATCTT 58.747 37.500 4.62 0.00 41.83 2.40
555 661 1.889829 TGCTTATTTTCCCCACAACGG 59.110 47.619 0.00 0.00 0.00 4.44
556 662 2.556622 ACTGCTTATTTTCCCCACAACG 59.443 45.455 0.00 0.00 0.00 4.10
557 663 4.556233 GAACTGCTTATTTTCCCCACAAC 58.444 43.478 0.00 0.00 0.00 3.32
574 680 2.200373 ATTTTGGGACGGAGGAACTG 57.800 50.000 0.00 0.00 41.55 3.16
576 682 2.745821 GTGTATTTTGGGACGGAGGAAC 59.254 50.000 0.00 0.00 0.00 3.62
578 684 1.066716 CGTGTATTTTGGGACGGAGGA 60.067 52.381 0.00 0.00 0.00 3.71
595 701 4.207224 CCGATACAAACTTGCTATCTCGTG 59.793 45.833 0.00 0.00 0.00 4.35
605 711 5.303747 TGGTTTATGCCGATACAAACTTG 57.696 39.130 0.00 0.00 32.69 3.16
606 712 4.398044 CCTGGTTTATGCCGATACAAACTT 59.602 41.667 0.00 0.00 32.69 2.66
616 722 1.135803 CGTTGTTCCTGGTTTATGCCG 60.136 52.381 0.00 0.00 0.00 5.69
620 726 4.028993 ACCATCGTTGTTCCTGGTTTAT 57.971 40.909 0.00 0.00 38.88 1.40
629 735 1.664874 GGCGGAAAACCATCGTTGTTC 60.665 52.381 0.00 0.00 30.72 3.18
636 742 1.095600 GAGAAGGGCGGAAAACCATC 58.904 55.000 0.00 0.00 0.00 3.51
639 745 3.574780 CGAGAAGGGCGGAAAACC 58.425 61.111 0.00 0.00 0.00 3.27
667 773 4.609947 CAACAAGTATTTTGCAGTGCTCA 58.390 39.130 17.60 0.00 0.00 4.26
676 782 2.366916 TGGTGGGGCAACAAGTATTTTG 59.633 45.455 0.00 0.00 39.74 2.44
681 787 0.259065 TGTTGGTGGGGCAACAAGTA 59.741 50.000 0.00 0.00 41.98 2.24
686 792 0.179086 CACTTTGTTGGTGGGGCAAC 60.179 55.000 0.00 0.00 0.00 4.17
698 804 8.062065 TGATTAAGTTTCAAGAACCACTTTGT 57.938 30.769 5.50 0.00 36.61 2.83
702 808 8.641498 ATCATGATTAAGTTTCAAGAACCACT 57.359 30.769 1.18 0.00 0.00 4.00
703 809 7.970614 GGATCATGATTAAGTTTCAAGAACCAC 59.029 37.037 10.14 0.00 35.25 4.16
712 818 8.833231 TCGGATTAGGATCATGATTAAGTTTC 57.167 34.615 10.14 3.70 33.77 2.78
854 962 1.751927 CCTTGAGCCCATGACCAGC 60.752 63.158 0.00 0.00 0.00 4.85
942 1113 2.056223 CGGCCTCCTCTCCCGTTTA 61.056 63.158 0.00 0.00 37.36 2.01
943 1114 3.391382 CGGCCTCCTCTCCCGTTT 61.391 66.667 0.00 0.00 37.36 3.60
1072 1255 2.269241 CTGGGCTTCTCCGGTTCC 59.731 66.667 0.00 0.00 34.94 3.62
1073 1256 2.269241 CCTGGGCTTCTCCGGTTC 59.731 66.667 0.00 0.00 34.94 3.62
1074 1257 4.035102 GCCTGGGCTTCTCCGGTT 62.035 66.667 0.00 0.00 38.26 4.44
1077 1260 4.521062 CTCGCCTGGGCTTCTCCG 62.521 72.222 10.04 0.00 39.32 4.63
1078 1261 4.847444 GCTCGCCTGGGCTTCTCC 62.847 72.222 10.04 0.00 39.32 3.71
1079 1262 4.847444 GGCTCGCCTGGGCTTCTC 62.847 72.222 10.04 0.00 39.32 2.87
1087 1270 4.161295 TTCATCCCGGCTCGCCTG 62.161 66.667 6.35 0.00 0.00 4.85
1088 1271 3.854669 CTTCATCCCGGCTCGCCT 61.855 66.667 6.35 0.00 0.00 5.52
1089 1272 4.918201 CCTTCATCCCGGCTCGCC 62.918 72.222 0.00 0.00 0.00 5.54
1092 1275 3.849951 TCGCCTTCATCCCGGCTC 61.850 66.667 0.00 0.00 44.11 4.70
1114 1297 4.530857 CCCTCGTAGCGGCCCTTG 62.531 72.222 0.00 0.00 0.00 3.61
1304 1487 1.556451 AGGGGATTGGTTACGTGGTAC 59.444 52.381 0.00 0.00 0.00 3.34
1316 1500 4.464947 GATGAACTTTAGGGAGGGGATTG 58.535 47.826 0.00 0.00 0.00 2.67
1328 1512 3.268595 GGAGGGGAAAGGGATGAACTTTA 59.731 47.826 0.00 0.00 38.21 1.85
1334 1519 0.919289 GTGGGAGGGGAAAGGGATGA 60.919 60.000 0.00 0.00 0.00 2.92
1336 1521 0.254299 ATGTGGGAGGGGAAAGGGAT 60.254 55.000 0.00 0.00 0.00 3.85
1338 1523 1.615262 GATGTGGGAGGGGAAAGGG 59.385 63.158 0.00 0.00 0.00 3.95
1761 1954 2.577593 GTAGGTGCCCCTGACGAC 59.422 66.667 0.00 0.00 42.67 4.34
1762 1955 2.682494 GGTAGGTGCCCCTGACGA 60.682 66.667 0.00 0.00 42.67 4.20
1860 2053 2.480224 AGCAAAAATGATGGATCGCG 57.520 45.000 0.00 0.00 0.00 5.87
1872 2065 3.726607 CATTACCACAGGCAAGCAAAAA 58.273 40.909 0.00 0.00 0.00 1.94
1882 2075 2.167693 TCGTTCTAGGCATTACCACAGG 59.832 50.000 0.00 0.00 43.14 4.00
1998 2204 4.895297 CCCCCATATTCAACACTAGCAATT 59.105 41.667 0.00 0.00 0.00 2.32
1999 2205 4.167892 TCCCCCATATTCAACACTAGCAAT 59.832 41.667 0.00 0.00 0.00 3.56
2001 2207 3.119319 TCCCCCATATTCAACACTAGCA 58.881 45.455 0.00 0.00 0.00 3.49
2002 2208 3.744660 CTCCCCCATATTCAACACTAGC 58.255 50.000 0.00 0.00 0.00 3.42
2003 2209 3.392616 AGCTCCCCCATATTCAACACTAG 59.607 47.826 0.00 0.00 0.00 2.57
2004 2210 3.393687 AGCTCCCCCATATTCAACACTA 58.606 45.455 0.00 0.00 0.00 2.74
2005 2211 2.208872 AGCTCCCCCATATTCAACACT 58.791 47.619 0.00 0.00 0.00 3.55
2018 2224 1.398958 CCTCACTGCTCTAGCTCCCC 61.399 65.000 3.26 0.00 42.66 4.81
2019 2225 1.398958 CCCTCACTGCTCTAGCTCCC 61.399 65.000 3.26 0.00 42.66 4.30
2030 2236 0.322975 CCACTCACCTTCCCTCACTG 59.677 60.000 0.00 0.00 0.00 3.66
2050 2256 8.543774 CAAACCACGCAGAACAAAATTTTAATA 58.456 29.630 2.44 0.00 0.00 0.98
2051 2257 7.405769 CAAACCACGCAGAACAAAATTTTAAT 58.594 30.769 2.44 0.00 0.00 1.40
2052 2258 6.673316 GCAAACCACGCAGAACAAAATTTTAA 60.673 34.615 2.44 0.00 0.00 1.52
2063 2269 3.337398 GTTTGCAAACCACGCAGAA 57.663 47.368 28.29 0.00 41.18 3.02
2077 2283 9.533253 CTAGGCATGAAATTATTTAAGGGTTTG 57.467 33.333 0.00 0.00 0.00 2.93
2078 2284 8.204160 GCTAGGCATGAAATTATTTAAGGGTTT 58.796 33.333 0.00 0.00 0.00 3.27
2121 2327 8.394121 GTTGAGAAACATTGGCAAAACAAATTA 58.606 29.630 3.01 0.00 33.48 1.40
2131 2337 3.316029 CAGTGAGTTGAGAAACATTGGCA 59.684 43.478 0.00 0.00 0.00 4.92
2270 2478 8.908786 TCTGGTTAGCTCCTGATTTTATAATG 57.091 34.615 0.00 0.00 32.04 1.90
2318 3081 6.349300 TCTCTGGTTAGGACAAGCAAATATC 58.651 40.000 0.00 0.00 0.00 1.63
2323 3086 4.431416 TTTCTCTGGTTAGGACAAGCAA 57.569 40.909 0.00 0.00 0.00 3.91
2356 3119 4.503741 TTGTGTTAAATGAGCTTCAGGC 57.496 40.909 0.00 0.00 42.19 4.85
2373 3136 4.214545 TCGGCCAGTTATTACAGTTTTGTG 59.785 41.667 2.24 0.00 38.23 3.33
2375 3138 4.142687 CCTCGGCCAGTTATTACAGTTTTG 60.143 45.833 2.24 0.00 0.00 2.44
2446 3209 4.690748 TCAACGAGCAAGTTCTTAATGAGG 59.309 41.667 0.00 0.00 30.96 3.86
2483 3246 4.640201 ACTGTGTTTCTTGAGCTTTAGCAA 59.360 37.500 4.33 0.00 45.16 3.91
2488 3251 5.415701 TCTGAAACTGTGTTTCTTGAGCTTT 59.584 36.000 19.52 0.00 0.00 3.51
2521 3284 3.587061 ACACCTATCCACTCATTTCACCA 59.413 43.478 0.00 0.00 0.00 4.17
2583 3346 6.515272 TTACCTTTTTCTGGATGAAGATGC 57.485 37.500 0.00 0.00 35.89 3.91
2602 3365 7.378728 GCTATGAAATTTCCTTGCGTATTTACC 59.621 37.037 15.48 0.00 0.00 2.85
2634 3397 0.825010 AAGACAAGTGGCTTGGGCAG 60.825 55.000 12.66 0.00 42.90 4.85
2635 3398 0.396974 AAAGACAAGTGGCTTGGGCA 60.397 50.000 12.66 0.00 43.96 5.36
2636 3399 0.315251 GAAAGACAAGTGGCTTGGGC 59.685 55.000 12.66 5.22 43.96 5.36
2638 3401 1.691196 TGGAAAGACAAGTGGCTTGG 58.309 50.000 12.66 0.00 43.96 3.61
2639 3402 3.491447 CCTTTGGAAAGACAAGTGGCTTG 60.491 47.826 0.00 7.27 43.96 4.01
2684 3447 2.538449 CGTCCCATTACATCTTGTACGC 59.462 50.000 0.00 0.00 31.69 4.42
2685 3448 4.036567 TCGTCCCATTACATCTTGTACG 57.963 45.455 0.00 0.00 31.69 3.67
2702 3465 2.095053 GCTCTCAGCTGGAATTTTCGTC 59.905 50.000 15.13 0.00 38.45 4.20
2715 3478 0.534652 GGGACATGATGGCTCTCAGC 60.535 60.000 0.00 0.00 41.46 4.26
2729 3492 1.839994 GATCATTCTGGTGGAGGGACA 59.160 52.381 0.00 0.00 0.00 4.02
2781 3544 6.392625 TTCTTAGAACGCTCATACTATGCT 57.607 37.500 0.00 0.00 0.00 3.79
2782 3545 8.918961 ATATTCTTAGAACGCTCATACTATGC 57.081 34.615 0.00 0.00 0.00 3.14
2967 5491 8.445275 ACAGTGATGTAAAATACTGAAACACA 57.555 30.769 9.89 0.00 42.28 3.72
3050 5574 0.686112 ACACCCTCAGAGCTAGCCTC 60.686 60.000 12.13 8.54 41.07 4.70
3342 5866 1.684983 CCATTTCATCAGTCCATGGGC 59.315 52.381 8.79 8.79 32.18 5.36
3344 5868 2.313317 CCCCATTTCATCAGTCCATGG 58.687 52.381 4.97 4.97 35.13 3.66
3373 5897 2.306805 ACTCAGCCAATCCACATCTTCA 59.693 45.455 0.00 0.00 0.00 3.02
3396 5920 5.253330 ACAAACATAATCACGGTCTTCCAT 58.747 37.500 0.00 0.00 0.00 3.41
3622 6152 7.172868 TCTACCATCGGAAATACAAGTTGTA 57.827 36.000 17.74 17.74 37.24 2.41
3642 6172 7.545265 GCATGATCTTCTGGTTATCTCATCTAC 59.455 40.741 0.00 0.00 0.00 2.59
3654 6184 4.228210 TCCTTTAAGGCATGATCTTCTGGT 59.772 41.667 6.05 0.00 34.61 4.00
3828 6358 3.762407 TTGTGTTGGCTTGCTAGTAGA 57.238 42.857 0.00 0.00 0.00 2.59
3829 6359 3.189287 CCTTTGTGTTGGCTTGCTAGTAG 59.811 47.826 0.00 0.00 0.00 2.57
3917 6447 4.530388 CACACAGCAATTACAGAACACAG 58.470 43.478 0.00 0.00 0.00 3.66
3956 6486 2.028476 CACTATCAGTTCGACCACCCAA 60.028 50.000 0.00 0.00 0.00 4.12
3999 6529 4.518970 TCCATAGACAGCAAAAACAAGACC 59.481 41.667 0.00 0.00 0.00 3.85
4001 6531 6.899393 ATTCCATAGACAGCAAAAACAAGA 57.101 33.333 0.00 0.00 0.00 3.02
4002 6532 6.749118 GCTATTCCATAGACAGCAAAAACAAG 59.251 38.462 0.00 0.00 34.77 3.16
4005 6535 5.450550 GGGCTATTCCATAGACAGCAAAAAC 60.451 44.000 0.00 0.00 42.90 2.43
4050 6582 7.386851 GCTACTATATCATCTAACTTGGGCAA 58.613 38.462 0.00 0.00 0.00 4.52
4097 6629 3.701040 GCTATGAGATTTTCCTTTGCCCA 59.299 43.478 0.00 0.00 0.00 5.36
4132 6664 9.629878 TTTTGTAAGAGGTATAAACTTGGACAA 57.370 29.630 0.00 0.00 0.00 3.18
4169 6701 6.426980 TTCTCTTGCTGCACTACATTATTG 57.573 37.500 0.00 0.00 0.00 1.90
4173 6705 5.972107 AAATTCTCTTGCTGCACTACATT 57.028 34.783 0.00 0.00 0.00 2.71
4203 6735 8.893727 GCTTCACAAAGATAAACCACATATACT 58.106 33.333 0.00 0.00 34.14 2.12
4230 6762 3.511146 ACCTTTGACACCATAGCAATTGG 59.489 43.478 7.72 0.00 40.26 3.16
4244 6777 3.819337 GGGAAGACCAACTAACCTTTGAC 59.181 47.826 0.00 0.00 39.85 3.18
4312 6845 0.825410 CAGTGCTCTGCATCCTCTCT 59.175 55.000 2.32 0.00 41.91 3.10
4385 6918 2.224867 ACAATGGACAACCTCCTTGGAG 60.225 50.000 9.60 9.60 40.26 3.86
4389 6922 1.075536 GGGACAATGGACAACCTCCTT 59.924 52.381 0.00 0.00 40.26 3.36
4396 6929 3.866703 TGTACAAGGGACAATGGACAA 57.133 42.857 0.00 0.00 38.11 3.18
4471 7007 4.142600 GGTCTTGAAACAGAATCCGATTGG 60.143 45.833 0.00 0.00 0.00 3.16
4477 7014 3.058224 CGTTGGGTCTTGAAACAGAATCC 60.058 47.826 0.00 0.00 0.00 3.01
4483 7020 1.305201 GAGCGTTGGGTCTTGAAACA 58.695 50.000 0.00 0.00 37.68 2.83
4551 7088 0.840288 TCTGGGGGTACACTGCACAT 60.840 55.000 0.00 0.00 0.00 3.21
4655 7202 4.619760 AGACATACATTGTGTTCGTGTACG 59.380 41.667 0.00 0.00 39.18 3.67
4661 7208 7.436376 AGACATGATAGACATACATTGTGTTCG 59.564 37.037 0.00 0.00 39.18 3.95
4881 7430 4.347000 TCTTATATTTTGGGACGGAGGGAG 59.653 45.833 0.00 0.00 0.00 4.30
4882 7431 4.300345 TCTTATATTTTGGGACGGAGGGA 58.700 43.478 0.00 0.00 0.00 4.20
4883 7432 4.699925 TCTTATATTTTGGGACGGAGGG 57.300 45.455 0.00 0.00 0.00 4.30
4884 7433 4.510340 CGTTCTTATATTTTGGGACGGAGG 59.490 45.833 0.00 0.00 0.00 4.30
4885 7434 5.114081 ACGTTCTTATATTTTGGGACGGAG 58.886 41.667 0.00 0.00 0.00 4.63
4886 7435 5.088680 ACGTTCTTATATTTTGGGACGGA 57.911 39.130 0.00 0.00 0.00 4.69
4887 7436 5.806366 AACGTTCTTATATTTTGGGACGG 57.194 39.130 0.00 0.00 0.00 4.79
4888 7437 9.609950 TTAAAAACGTTCTTATATTTTGGGACG 57.390 29.630 0.00 0.00 0.00 4.79
4900 7449 9.480053 ACTATGCTAGTGTTAAAAACGTTCTTA 57.520 29.630 0.00 0.00 37.69 2.10
4901 7450 8.374327 ACTATGCTAGTGTTAAAAACGTTCTT 57.626 30.769 0.00 0.00 37.69 2.52
4902 7451 7.958053 ACTATGCTAGTGTTAAAAACGTTCT 57.042 32.000 0.00 0.00 37.69 3.01
4916 7465 5.989777 AGAACGTTTTTGACACTATGCTAGT 59.010 36.000 0.46 0.00 40.28 2.57
4917 7466 6.467723 AGAACGTTTTTGACACTATGCTAG 57.532 37.500 0.46 0.00 0.00 3.42
4918 7467 6.854496 AAGAACGTTTTTGACACTATGCTA 57.146 33.333 0.46 0.00 0.00 3.49
4919 7468 5.751243 AAGAACGTTTTTGACACTATGCT 57.249 34.783 0.46 0.00 0.00 3.79
4920 7469 9.769093 AATATAAGAACGTTTTTGACACTATGC 57.231 29.630 13.87 0.00 0.00 3.14
4924 7473 8.504005 CCAGAATATAAGAACGTTTTTGACACT 58.496 33.333 13.87 4.79 0.00 3.55
4925 7474 7.749126 CCCAGAATATAAGAACGTTTTTGACAC 59.251 37.037 13.87 2.84 0.00 3.67
4926 7475 7.662258 TCCCAGAATATAAGAACGTTTTTGACA 59.338 33.333 13.87 0.01 0.00 3.58
4927 7476 7.961283 GTCCCAGAATATAAGAACGTTTTTGAC 59.039 37.037 13.87 5.89 0.00 3.18
4928 7477 7.881232 AGTCCCAGAATATAAGAACGTTTTTGA 59.119 33.333 13.87 2.81 0.00 2.69
4929 7478 7.962918 CAGTCCCAGAATATAAGAACGTTTTTG 59.037 37.037 13.87 0.00 0.00 2.44
4930 7479 7.881232 TCAGTCCCAGAATATAAGAACGTTTTT 59.119 33.333 9.22 9.22 0.00 1.94
4931 7480 7.391620 TCAGTCCCAGAATATAAGAACGTTTT 58.608 34.615 0.46 0.00 0.00 2.43
4932 7481 6.942976 TCAGTCCCAGAATATAAGAACGTTT 58.057 36.000 0.46 0.00 0.00 3.60
4933 7482 6.407074 CCTCAGTCCCAGAATATAAGAACGTT 60.407 42.308 0.00 0.00 0.00 3.99
4934 7483 5.069251 CCTCAGTCCCAGAATATAAGAACGT 59.931 44.000 0.00 0.00 0.00 3.99
4935 7484 5.509840 CCCTCAGTCCCAGAATATAAGAACG 60.510 48.000 0.00 0.00 0.00 3.95
4936 7485 5.602978 TCCCTCAGTCCCAGAATATAAGAAC 59.397 44.000 0.00 0.00 0.00 3.01
4937 7486 5.788430 TCCCTCAGTCCCAGAATATAAGAA 58.212 41.667 0.00 0.00 0.00 2.52
4938 7487 5.103043 ACTCCCTCAGTCCCAGAATATAAGA 60.103 44.000 0.00 0.00 0.00 2.10
4939 7488 5.151454 ACTCCCTCAGTCCCAGAATATAAG 58.849 45.833 0.00 0.00 0.00 1.73
4940 7489 5.157770 ACTCCCTCAGTCCCAGAATATAA 57.842 43.478 0.00 0.00 0.00 0.98
4941 7490 4.834406 ACTCCCTCAGTCCCAGAATATA 57.166 45.455 0.00 0.00 0.00 0.86
4942 7491 3.715648 ACTCCCTCAGTCCCAGAATAT 57.284 47.619 0.00 0.00 0.00 1.28
4943 7492 4.834406 ATACTCCCTCAGTCCCAGAATA 57.166 45.455 0.00 0.00 36.43 1.75
4944 7493 3.715648 ATACTCCCTCAGTCCCAGAAT 57.284 47.619 0.00 0.00 36.43 2.40
4945 7494 3.491766 AATACTCCCTCAGTCCCAGAA 57.508 47.619 0.00 0.00 36.43 3.02
4946 7495 3.012959 AGAAATACTCCCTCAGTCCCAGA 59.987 47.826 0.00 0.00 36.43 3.86
4947 7496 3.379452 AGAAATACTCCCTCAGTCCCAG 58.621 50.000 0.00 0.00 36.43 4.45
4948 7497 3.491766 AGAAATACTCCCTCAGTCCCA 57.508 47.619 0.00 0.00 36.43 4.37
4949 7498 3.775316 TGAAGAAATACTCCCTCAGTCCC 59.225 47.826 0.00 0.00 36.43 4.46
4950 7499 5.622346 ATGAAGAAATACTCCCTCAGTCC 57.378 43.478 0.00 0.00 36.43 3.85
4951 7500 8.424918 TCAATATGAAGAAATACTCCCTCAGTC 58.575 37.037 0.00 0.00 36.43 3.51
4952 7501 8.324191 TCAATATGAAGAAATACTCCCTCAGT 57.676 34.615 0.00 0.00 39.41 3.41
4953 7502 9.790344 ATTCAATATGAAGAAATACTCCCTCAG 57.210 33.333 0.00 0.00 40.05 3.35
5043 7592 1.122632 TCCTGTGCACCCGGAGTTTA 61.123 55.000 15.69 0.00 0.00 2.01
5066 7615 6.324544 GGATACTCTTATTTAGGGGGAGAGT 58.675 44.000 9.04 9.04 46.28 3.24
5176 7725 2.756760 GGCAGGATCAGATCAAAAAGCA 59.243 45.455 12.66 0.00 0.00 3.91
5192 7741 2.433838 CAGACAGAGCACGGCAGG 60.434 66.667 0.00 0.00 0.00 4.85
5497 8063 6.260936 ACAAGACAGTTGACTTAAACCTCATG 59.739 38.462 0.00 0.00 0.00 3.07
5511 8077 1.581934 TTCTCGGCACAAGACAGTTG 58.418 50.000 0.00 0.00 0.00 3.16
5597 8163 5.105146 GGAACATCTGTGAAGATCAGGTACT 60.105 44.000 0.00 0.00 43.88 2.73
5638 8207 4.770010 ACTGATGAGATAGGTAAGCTAGGC 59.230 45.833 0.00 0.00 0.00 3.93
5645 8214 7.344612 ACATGTTGGTACTGATGAGATAGGTAA 59.655 37.037 0.00 0.00 0.00 2.85
5664 8233 7.755591 AGTCTTTGTAATCTGCATACATGTTG 58.244 34.615 2.30 3.61 33.55 3.33
5713 8282 0.558712 ACTCCTACCTAGCCCTGGAG 59.441 60.000 13.93 13.93 46.93 3.86
5751 8321 6.408662 GCAAGAAGATAATTCCTACCTCACCT 60.409 42.308 0.00 0.00 0.00 4.00
5776 8346 1.409064 TCGTACTAGCATTGCTCCAGG 59.591 52.381 15.81 7.34 40.44 4.45
5798 8368 4.835615 AGAGGGAGCAGATATTTACGATGT 59.164 41.667 0.00 0.00 0.00 3.06
5813 8383 2.399580 ACATTACAGGGTAGAGGGAGC 58.600 52.381 0.00 0.00 0.00 4.70
5814 8384 4.543689 TGTACATTACAGGGTAGAGGGAG 58.456 47.826 0.00 0.00 34.06 4.30
5815 8385 4.613265 TGTACATTACAGGGTAGAGGGA 57.387 45.455 0.00 0.00 34.06 4.20
5816 8386 4.468510 TGTTGTACATTACAGGGTAGAGGG 59.531 45.833 0.00 0.00 40.24 4.30
5817 8387 5.670792 TGTTGTACATTACAGGGTAGAGG 57.329 43.478 0.00 0.00 40.24 3.69
5818 8388 6.460781 TGTTGTTGTACATTACAGGGTAGAG 58.539 40.000 0.00 0.00 40.24 2.43
5819 8389 6.422344 TGTTGTTGTACATTACAGGGTAGA 57.578 37.500 0.00 0.00 40.24 2.59
5820 8390 6.483974 TGTTGTTGTTGTACATTACAGGGTAG 59.516 38.462 0.00 0.00 40.24 3.18
5821 8391 6.354938 TGTTGTTGTTGTACATTACAGGGTA 58.645 36.000 0.00 0.00 40.24 3.69
5822 8392 5.194432 TGTTGTTGTTGTACATTACAGGGT 58.806 37.500 0.00 0.00 40.24 4.34
5823 8393 5.759506 TGTTGTTGTTGTACATTACAGGG 57.240 39.130 0.00 0.00 40.24 4.45
5824 8394 6.556212 TGTTGTTGTTGTTGTACATTACAGG 58.444 36.000 0.00 0.00 40.24 4.00
5825 8395 7.539022 TGTTGTTGTTGTTGTTGTACATTACAG 59.461 33.333 0.00 0.00 40.24 2.74
5826 8396 7.368059 TGTTGTTGTTGTTGTTGTACATTACA 58.632 30.769 0.00 0.00 36.79 2.41
5827 8397 7.798486 TGTTGTTGTTGTTGTTGTACATTAC 57.202 32.000 0.00 0.00 0.00 1.89
5828 8398 8.812147 TTTGTTGTTGTTGTTGTTGTACATTA 57.188 26.923 0.00 0.00 0.00 1.90
5829 8399 7.570324 GCTTTGTTGTTGTTGTTGTTGTACATT 60.570 33.333 0.00 0.00 0.00 2.71
5830 8400 6.128688 GCTTTGTTGTTGTTGTTGTTGTACAT 60.129 34.615 0.00 0.00 0.00 2.29
5831 8401 5.175856 GCTTTGTTGTTGTTGTTGTTGTACA 59.824 36.000 0.00 0.00 0.00 2.90
5832 8402 5.388994 GGCTTTGTTGTTGTTGTTGTTGTAC 60.389 40.000 0.00 0.00 0.00 2.90
5869 8439 3.039011 TCATCTAGCCTACCCCAACTTC 58.961 50.000 0.00 0.00 0.00 3.01
5910 8482 0.321919 GTGCCAGAGCCATGAGTTGA 60.322 55.000 0.00 0.00 38.69 3.18
6002 8574 3.830178 TGACATGAGAGGAGTCCGTTAAA 59.170 43.478 2.76 0.00 0.00 1.52
6036 8608 0.909610 AATGTCAAGAGAGGGCGGGA 60.910 55.000 0.00 0.00 0.00 5.14
6132 8704 2.373169 AGGAGAAGCTTGTCCAACATCA 59.627 45.455 36.25 0.00 42.72 3.07
6302 8874 2.606065 GGTTTGACCCGCAATGTTGTAC 60.606 50.000 0.00 0.00 36.15 2.90
6319 8891 0.611714 ATTCTACAGGACGGCGGTTT 59.388 50.000 13.24 0.00 0.00 3.27
6338 8910 3.202097 GCCACAAAAGCTAAAAGGCAAA 58.798 40.909 10.99 0.00 40.29 3.68
6393 8965 1.224315 CCGGATGGATGAAGTGGCA 59.776 57.895 0.00 0.00 37.49 4.92
6450 9022 4.960469 TGTCTTACATTACAGGGTAGAGGG 59.040 45.833 0.00 0.00 0.00 4.30
6506 9078 4.262079 CCCCTCCGTCTCATAATGTAAGAC 60.262 50.000 0.00 0.00 36.82 3.01
6507 9079 3.895656 CCCCTCCGTCTCATAATGTAAGA 59.104 47.826 0.00 0.00 0.00 2.10
6508 9080 3.006967 CCCCCTCCGTCTCATAATGTAAG 59.993 52.174 0.00 0.00 0.00 2.34
6509 9081 2.969950 CCCCCTCCGTCTCATAATGTAA 59.030 50.000 0.00 0.00 0.00 2.41
6510 9082 2.090943 ACCCCCTCCGTCTCATAATGTA 60.091 50.000 0.00 0.00 0.00 2.29
6511 9083 1.344087 ACCCCCTCCGTCTCATAATGT 60.344 52.381 0.00 0.00 0.00 2.71
6512 9084 1.424638 ACCCCCTCCGTCTCATAATG 58.575 55.000 0.00 0.00 0.00 1.90
6513 9085 3.562108 ATACCCCCTCCGTCTCATAAT 57.438 47.619 0.00 0.00 0.00 1.28
6514 9086 3.339713 AATACCCCCTCCGTCTCATAA 57.660 47.619 0.00 0.00 0.00 1.90
6515 9087 3.339713 AAATACCCCCTCCGTCTCATA 57.660 47.619 0.00 0.00 0.00 2.15
6516 9088 2.191981 AAATACCCCCTCCGTCTCAT 57.808 50.000 0.00 0.00 0.00 2.90
6517 9089 2.674420 CTAAATACCCCCTCCGTCTCA 58.326 52.381 0.00 0.00 0.00 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.