Multiple sequence alignment - TraesCS4A01G320200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G320200 chr4A 100.000 3406 0 0 1 3406 608865790 608869195 0.000000e+00 6290.0
1 TraesCS4A01G320200 chr4A 95.958 569 9 6 1 567 573670646 573670090 0.000000e+00 911.0
2 TraesCS4A01G320200 chr4A 91.642 335 8 5 231 562 573683075 573683392 2.410000e-121 446.0
3 TraesCS4A01G320200 chr4A 95.652 253 10 1 305 557 608841081 608840830 4.090000e-109 405.0
4 TraesCS4A01G320200 chr4A 100.000 28 0 0 738 765 76618762 76618789 6.000000e-03 52.8
5 TraesCS4A01G320200 chr5B 88.312 1925 121 53 622 2469 706157246 706155349 0.000000e+00 2213.0
6 TraesCS4A01G320200 chr5B 83.761 351 23 13 2478 2806 705978164 705977826 5.520000e-78 302.0
7 TraesCS4A01G320200 chr5B 79.550 489 46 30 2018 2479 705947104 705946643 1.990000e-77 300.0
8 TraesCS4A01G320200 chr5B 78.218 404 23 26 2847 3205 705977741 705977358 7.460000e-47 198.0
9 TraesCS4A01G320200 chr5B 87.500 136 9 3 2275 2409 706044500 706044372 2.120000e-32 150.0
10 TraesCS4A01G320200 chr5B 83.750 80 10 1 2279 2358 479859395 479859471 4.710000e-09 73.1
11 TraesCS4A01G320200 chr5B 85.135 74 6 2 2002 2071 706458318 706458390 1.700000e-08 71.3
12 TraesCS4A01G320200 chr5B 100.000 30 0 0 738 767 406876387 406876358 4.750000e-04 56.5
13 TraesCS4A01G320200 chr5D 88.694 1707 109 41 995 2628 563727299 563725604 0.000000e+00 2006.0
14 TraesCS4A01G320200 chr5D 84.479 1411 101 52 1252 2580 563639733 563638359 0.000000e+00 1284.0
15 TraesCS4A01G320200 chr5D 93.837 503 19 5 1 491 375443308 375442806 0.000000e+00 747.0
16 TraesCS4A01G320200 chr5D 89.085 568 33 12 1 561 449914015 449913470 0.000000e+00 678.0
17 TraesCS4A01G320200 chr5D 88.988 336 17 7 231 563 375448652 375448970 6.850000e-107 398.0
18 TraesCS4A01G320200 chr5D 84.639 319 27 5 958 1260 563640067 563639755 7.150000e-77 298.0
19 TraesCS4A01G320200 chr5D 84.277 318 20 16 2897 3203 563725330 563725032 2.000000e-72 283.0
20 TraesCS4A01G320200 chr5D 98.020 101 2 0 2706 2806 563725595 563725495 3.490000e-40 176.0
21 TraesCS4A01G320200 chr5D 94.444 54 1 2 2847 2899 563725398 563725346 7.830000e-12 82.4
22 TraesCS4A01G320200 chr5D 85.526 76 10 1 2252 2326 563974958 563975033 1.010000e-10 78.7
23 TraesCS4A01G320200 chr3A 96.092 563 21 1 1 562 714630712 714630150 0.000000e+00 917.0
24 TraesCS4A01G320200 chr3A 90.476 336 12 7 231 563 714638586 714638904 3.140000e-115 425.0
25 TraesCS4A01G320200 chr4D 94.004 567 28 6 1 563 433386456 433387020 0.000000e+00 854.0
26 TraesCS4A01G320200 chr4D 92.870 575 24 8 1 562 477883876 477884446 0.000000e+00 819.0
27 TraesCS4A01G320200 chr4D 89.021 337 15 6 231 562 433378830 433378511 6.850000e-107 398.0
28 TraesCS4A01G320200 chr4D 88.988 336 17 5 231 563 477876140 477875822 6.850000e-107 398.0
29 TraesCS4A01G320200 chr2B 91.115 574 39 5 1 562 685372187 685372760 0.000000e+00 767.0
30 TraesCS4A01G320200 chr2B 100.000 28 0 0 740 767 69047815 69047842 6.000000e-03 52.8
31 TraesCS4A01G320200 chr5A 86.644 584 34 18 1 578 396679183 396679728 1.050000e-169 606.0
32 TraesCS4A01G320200 chr4B 89.344 366 32 7 3 363 14639944 14640307 1.440000e-123 453.0
33 TraesCS4A01G320200 chr6B 90.576 191 12 3 3219 3406 45266425 45266238 7.300000e-62 248.0
34 TraesCS4A01G320200 chr3B 89.362 188 12 3 3219 3403 695584945 695585127 2.640000e-56 230.0
35 TraesCS4A01G320200 chr7D 89.362 188 11 3 3219 3403 41834691 41834872 9.510000e-56 228.0
36 TraesCS4A01G320200 chr1A 100.000 30 0 0 740 769 551530499 551530470 4.750000e-04 56.5
37 TraesCS4A01G320200 chr1B 94.444 36 0 2 733 767 666871591 666871557 2.000000e-03 54.7
38 TraesCS4A01G320200 chr1B 100.000 28 0 0 740 767 666871649 666871622 6.000000e-03 52.8
39 TraesCS4A01G320200 chr1B 100.000 28 0 0 740 767 666871655 666871628 6.000000e-03 52.8
40 TraesCS4A01G320200 chr7B 94.286 35 0 2 735 767 277205425 277205459 6.000000e-03 52.8
41 TraesCS4A01G320200 chr2A 100.000 28 0 0 740 767 5535020 5534993 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G320200 chr4A 608865790 608869195 3405 False 6290.00 6290 100.00000 1 3406 1 chr4A.!!$F3 3405
1 TraesCS4A01G320200 chr4A 573670090 573670646 556 True 911.00 911 95.95800 1 567 1 chr4A.!!$R1 566
2 TraesCS4A01G320200 chr5B 706155349 706157246 1897 True 2213.00 2213 88.31200 622 2469 1 chr5B.!!$R4 1847
3 TraesCS4A01G320200 chr5B 705977358 705978164 806 True 250.00 302 80.98950 2478 3205 2 chr5B.!!$R5 727
4 TraesCS4A01G320200 chr5D 563638359 563640067 1708 True 791.00 1284 84.55900 958 2580 2 chr5D.!!$R3 1622
5 TraesCS4A01G320200 chr5D 375442806 375443308 502 True 747.00 747 93.83700 1 491 1 chr5D.!!$R1 490
6 TraesCS4A01G320200 chr5D 449913470 449914015 545 True 678.00 678 89.08500 1 561 1 chr5D.!!$R2 560
7 TraesCS4A01G320200 chr5D 563725032 563727299 2267 True 636.85 2006 91.35875 995 3203 4 chr5D.!!$R4 2208
8 TraesCS4A01G320200 chr3A 714630150 714630712 562 True 917.00 917 96.09200 1 562 1 chr3A.!!$R1 561
9 TraesCS4A01G320200 chr4D 433386456 433387020 564 False 854.00 854 94.00400 1 563 1 chr4D.!!$F1 562
10 TraesCS4A01G320200 chr4D 477883876 477884446 570 False 819.00 819 92.87000 1 562 1 chr4D.!!$F2 561
11 TraesCS4A01G320200 chr2B 685372187 685372760 573 False 767.00 767 91.11500 1 562 1 chr2B.!!$F2 561
12 TraesCS4A01G320200 chr5A 396679183 396679728 545 False 606.00 606 86.64400 1 578 1 chr5A.!!$F1 577

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
950 998 0.321122 CTTTGCCACTCTTCTCCGCT 60.321 55.0 0.0 0.0 0.0 5.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2646 2920 0.035881 TCAGAGCTTCACAAGGGCAG 59.964 55.0 0.0 0.0 0.0 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 53 4.533311 CCTAACCCTAACCCTAGAACACAA 59.467 45.833 0.00 0.00 0.00 3.33
393 415 1.005037 GCGTCCACCTGACATGTGA 60.005 57.895 1.15 0.00 44.71 3.58
426 448 1.875514 AGAAACGGGTTTAAACGCTCC 59.124 47.619 26.77 15.43 39.45 4.70
501 524 4.023726 TGGTAGTTATCGGCCACTTTTT 57.976 40.909 2.24 0.00 0.00 1.94
570 595 7.701809 TTTTTGTCAAACACTCGTTTTCTTT 57.298 28.000 0.00 0.00 42.82 2.52
571 596 6.683090 TTTGTCAAACACTCGTTTTCTTTG 57.317 33.333 0.00 0.00 42.82 2.77
572 597 4.728534 TGTCAAACACTCGTTTTCTTTGG 58.271 39.130 0.00 0.00 42.82 3.28
573 598 4.456222 TGTCAAACACTCGTTTTCTTTGGA 59.544 37.500 0.00 0.00 42.82 3.53
574 599 5.124776 TGTCAAACACTCGTTTTCTTTGGAT 59.875 36.000 0.00 0.00 42.82 3.41
575 600 6.316640 TGTCAAACACTCGTTTTCTTTGGATA 59.683 34.615 0.00 0.00 42.82 2.59
576 601 6.851330 GTCAAACACTCGTTTTCTTTGGATAG 59.149 38.462 0.00 0.00 42.82 2.08
577 602 6.764085 TCAAACACTCGTTTTCTTTGGATAGA 59.236 34.615 0.00 0.00 42.82 1.98
578 603 6.541111 AACACTCGTTTTCTTTGGATAGAC 57.459 37.500 0.00 0.00 28.09 2.59
579 604 4.684703 ACACTCGTTTTCTTTGGATAGACG 59.315 41.667 0.00 0.00 0.00 4.18
580 605 4.921515 CACTCGTTTTCTTTGGATAGACGA 59.078 41.667 0.00 0.00 0.00 4.20
581 606 5.061064 CACTCGTTTTCTTTGGATAGACGAG 59.939 44.000 17.99 17.99 40.87 4.18
582 607 5.048224 ACTCGTTTTCTTTGGATAGACGAGA 60.048 40.000 24.11 0.00 39.06 4.04
583 608 5.159209 TCGTTTTCTTTGGATAGACGAGAC 58.841 41.667 0.00 0.00 0.00 3.36
584 609 5.048224 TCGTTTTCTTTGGATAGACGAGACT 60.048 40.000 0.00 0.00 0.00 3.24
585 610 6.149973 TCGTTTTCTTTGGATAGACGAGACTA 59.850 38.462 0.00 0.00 0.00 2.59
586 611 6.469595 CGTTTTCTTTGGATAGACGAGACTAG 59.530 42.308 0.00 0.00 0.00 2.57
587 612 7.536855 GTTTTCTTTGGATAGACGAGACTAGA 58.463 38.462 0.00 0.00 0.00 2.43
588 613 6.680874 TTCTTTGGATAGACGAGACTAGAC 57.319 41.667 0.00 0.00 0.00 2.59
589 614 4.809958 TCTTTGGATAGACGAGACTAGACG 59.190 45.833 0.00 1.90 0.00 4.18
590 615 3.815856 TGGATAGACGAGACTAGACGT 57.184 47.619 12.18 12.18 45.32 4.34
591 616 4.926140 TGGATAGACGAGACTAGACGTA 57.074 45.455 12.28 2.20 42.74 3.57
592 617 4.615949 TGGATAGACGAGACTAGACGTAC 58.384 47.826 12.28 8.00 42.74 3.67
593 618 3.668191 GGATAGACGAGACTAGACGTACG 59.332 52.174 15.01 15.01 42.74 3.67
594 619 2.929531 AGACGAGACTAGACGTACGA 57.070 50.000 24.41 0.00 42.74 3.43
595 620 3.435105 AGACGAGACTAGACGTACGAT 57.565 47.619 24.41 12.52 42.74 3.73
596 621 3.114809 AGACGAGACTAGACGTACGATG 58.885 50.000 24.41 10.73 42.74 3.84
597 622 2.200067 ACGAGACTAGACGTACGATGG 58.800 52.381 24.41 14.08 40.92 3.51
598 623 2.200067 CGAGACTAGACGTACGATGGT 58.800 52.381 24.41 17.25 0.00 3.55
599 624 3.181486 ACGAGACTAGACGTACGATGGTA 60.181 47.826 24.41 6.39 40.92 3.25
600 625 3.986572 CGAGACTAGACGTACGATGGTAT 59.013 47.826 24.41 14.69 0.00 2.73
601 626 4.089780 CGAGACTAGACGTACGATGGTATC 59.910 50.000 24.41 20.64 0.00 2.24
602 627 4.953667 AGACTAGACGTACGATGGTATCA 58.046 43.478 24.41 0.00 0.00 2.15
603 628 4.989797 AGACTAGACGTACGATGGTATCAG 59.010 45.833 24.41 9.98 0.00 2.90
604 629 4.701765 ACTAGACGTACGATGGTATCAGT 58.298 43.478 24.41 10.55 0.00 3.41
605 630 5.121811 ACTAGACGTACGATGGTATCAGTT 58.878 41.667 24.41 0.00 0.00 3.16
606 631 4.288670 AGACGTACGATGGTATCAGTTG 57.711 45.455 24.41 0.00 0.00 3.16
607 632 3.066342 AGACGTACGATGGTATCAGTTGG 59.934 47.826 24.41 0.00 0.00 3.77
608 633 3.018856 ACGTACGATGGTATCAGTTGGA 58.981 45.455 24.41 0.00 0.00 3.53
609 634 3.635373 ACGTACGATGGTATCAGTTGGAT 59.365 43.478 24.41 0.00 40.14 3.41
610 635 4.098960 ACGTACGATGGTATCAGTTGGATT 59.901 41.667 24.41 0.00 37.44 3.01
611 636 4.444388 CGTACGATGGTATCAGTTGGATTG 59.556 45.833 10.44 0.00 37.44 2.67
612 637 3.808728 ACGATGGTATCAGTTGGATTGG 58.191 45.455 0.00 0.00 37.44 3.16
613 638 3.454447 ACGATGGTATCAGTTGGATTGGA 59.546 43.478 0.00 0.00 37.44 3.53
614 639 4.103153 ACGATGGTATCAGTTGGATTGGAT 59.897 41.667 0.00 0.00 37.44 3.41
615 640 5.065914 CGATGGTATCAGTTGGATTGGATT 58.934 41.667 0.00 0.00 37.44 3.01
616 641 5.532406 CGATGGTATCAGTTGGATTGGATTT 59.468 40.000 0.00 0.00 37.44 2.17
617 642 6.513884 CGATGGTATCAGTTGGATTGGATTTG 60.514 42.308 0.00 0.00 37.44 2.32
618 643 4.955450 TGGTATCAGTTGGATTGGATTTGG 59.045 41.667 0.00 0.00 37.44 3.28
619 644 5.200483 GGTATCAGTTGGATTGGATTTGGA 58.800 41.667 0.00 0.00 37.44 3.53
620 645 5.835280 GGTATCAGTTGGATTGGATTTGGAT 59.165 40.000 0.00 0.00 37.44 3.41
642 667 1.065273 GATTTGGATGCAGCGGCTG 59.935 57.895 25.21 25.21 41.91 4.85
672 697 4.970003 GTCAGAAAGAAACGTTGGAACATG 59.030 41.667 0.00 0.00 39.30 3.21
673 698 4.036262 TCAGAAAGAAACGTTGGAACATGG 59.964 41.667 0.00 0.00 39.30 3.66
674 699 2.793278 AAGAAACGTTGGAACATGGC 57.207 45.000 0.00 0.00 39.30 4.40
675 700 1.686355 AGAAACGTTGGAACATGGCA 58.314 45.000 0.00 0.00 39.30 4.92
676 701 1.608590 AGAAACGTTGGAACATGGCAG 59.391 47.619 0.00 0.00 39.30 4.85
677 702 0.673437 AAACGTTGGAACATGGCAGG 59.327 50.000 0.00 0.00 39.30 4.85
678 703 1.805428 AACGTTGGAACATGGCAGGC 61.805 55.000 0.00 0.00 39.30 4.85
679 704 2.267351 CGTTGGAACATGGCAGGCA 61.267 57.895 0.00 0.00 39.30 4.75
729 755 4.373116 CGGTGTGTGCGGCCTACT 62.373 66.667 0.00 0.00 0.00 2.57
742 768 4.143333 CTACTGTCCCCACGGCCG 62.143 72.222 26.86 26.86 31.07 6.13
743 769 4.682334 TACTGTCCCCACGGCCGA 62.682 66.667 35.90 5.52 31.07 5.54
784 810 1.291906 GTGGTTTGGCATTTCCCGG 59.708 57.895 0.00 0.00 0.00 5.73
785 811 2.264480 GGTTTGGCATTTCCCGGC 59.736 61.111 0.00 0.00 0.00 6.13
786 812 2.126110 GTTTGGCATTTCCCGGCG 60.126 61.111 0.00 0.00 0.00 6.46
792 818 2.631580 GCATTTCCCGGCGGTGAAA 61.632 57.895 30.70 30.70 35.17 2.69
798 824 2.332654 CCCGGCGGTGAAAGAAAGG 61.333 63.158 26.32 0.50 0.00 3.11
805 831 3.005367 GGCGGTGAAAGAAAGGAAAATCA 59.995 43.478 0.00 0.00 0.00 2.57
806 832 4.500716 GGCGGTGAAAGAAAGGAAAATCAA 60.501 41.667 0.00 0.00 0.00 2.57
807 833 5.230182 GCGGTGAAAGAAAGGAAAATCAAT 58.770 37.500 0.00 0.00 0.00 2.57
808 834 5.346011 GCGGTGAAAGAAAGGAAAATCAATC 59.654 40.000 0.00 0.00 0.00 2.67
809 835 6.681777 CGGTGAAAGAAAGGAAAATCAATCT 58.318 36.000 0.00 0.00 0.00 2.40
810 836 6.803807 CGGTGAAAGAAAGGAAAATCAATCTC 59.196 38.462 0.00 0.00 0.00 2.75
855 897 1.383803 ATCACTGCTCCTCCCCTCC 60.384 63.158 0.00 0.00 0.00 4.30
860 902 4.890306 GCTCCTCCCCTCCCCTCC 62.890 77.778 0.00 0.00 0.00 4.30
863 905 4.505970 CCTCCCCTCCCCTCCCTG 62.506 77.778 0.00 0.00 0.00 4.45
870 912 0.769776 CCTCCCCTCCCTGCATACAT 60.770 60.000 0.00 0.00 0.00 2.29
891 939 6.763355 ACATTGCTCTTCTCTTCTCTACAAA 58.237 36.000 0.00 0.00 0.00 2.83
901 949 8.824159 TTCTCTTCTCTACAAACAAGATTCAG 57.176 34.615 0.00 0.00 0.00 3.02
950 998 0.321122 CTTTGCCACTCTTCTCCGCT 60.321 55.000 0.00 0.00 0.00 5.52
971 1019 2.732658 GCTGCTGCTGCCAAAGTT 59.267 55.556 19.30 0.00 38.71 2.66
985 1033 4.096382 TGCCAAAGTTTGTGTCTTTCTCTC 59.904 41.667 14.36 0.00 33.58 3.20
1056 1108 3.114390 CCCTCCACCTCCTCCTCT 58.886 66.667 0.00 0.00 0.00 3.69
1068 1120 4.779733 TCCTCTGTCCTCGCCCCC 62.780 72.222 0.00 0.00 0.00 5.40
1297 1407 3.587602 CGCAAATAACGCGCCATG 58.412 55.556 5.73 0.00 46.98 3.66
1320 1432 2.677228 CCCACCTGAATCCCGCTT 59.323 61.111 0.00 0.00 0.00 4.68
1322 1434 1.604378 CCACCTGAATCCCGCTTCT 59.396 57.895 0.00 0.00 0.00 2.85
1610 1724 3.779759 CAAGATCAAGGAGAAGGAGACG 58.220 50.000 0.00 0.00 0.00 4.18
1712 1833 2.766400 GGAGGAGGACGACGAGCTG 61.766 68.421 0.00 0.00 0.00 4.24
1744 1865 3.578272 CGCCGAGGACGAGGAGAG 61.578 72.222 0.00 0.00 42.66 3.20
1779 1912 0.391263 GACCACCGACAGACCAATCC 60.391 60.000 0.00 0.00 0.00 3.01
1784 1917 2.430694 CACCGACAGACCAATCCATCTA 59.569 50.000 0.00 0.00 0.00 1.98
1786 1919 3.711704 ACCGACAGACCAATCCATCTATT 59.288 43.478 0.00 0.00 0.00 1.73
1789 1922 5.008019 CCGACAGACCAATCCATCTATTTTG 59.992 44.000 0.00 0.00 0.00 2.44
1790 1923 5.504665 CGACAGACCAATCCATCTATTTTGC 60.505 44.000 0.00 0.00 0.00 3.68
1791 1924 5.513233 ACAGACCAATCCATCTATTTTGCT 58.487 37.500 0.00 0.00 0.00 3.91
1795 1928 4.046462 CCAATCCATCTATTTTGCTTGCG 58.954 43.478 0.00 0.00 0.00 4.85
1835 1974 7.754924 CACTTGTTTACAACTGTTTTGACTGAT 59.245 33.333 0.00 0.00 0.00 2.90
1877 2020 7.904558 TCATTCACCATCTGATCTAGTAGTT 57.095 36.000 0.00 0.00 0.00 2.24
1935 2083 7.601886 AGAATTCATATACTATGCTGCTGTGTC 59.398 37.037 8.44 0.00 0.00 3.67
1937 2085 5.776744 TCATATACTATGCTGCTGTGTCAG 58.223 41.667 0.00 0.00 37.15 3.51
1997 2148 2.305635 TGTGTGAGCCCATCAACTATGT 59.694 45.455 0.00 0.00 40.43 2.29
2121 2275 1.739562 CAGGAACGAGCAGACAGGC 60.740 63.158 0.00 0.00 0.00 4.85
2126 2280 2.807045 CGAGCAGACAGGCACGTC 60.807 66.667 0.00 0.00 41.81 4.34
2127 2281 2.433318 GAGCAGACAGGCACGTCC 60.433 66.667 3.73 0.00 36.52 4.79
2136 2297 4.030452 GGCACGTCCTTGCTGCAC 62.030 66.667 0.00 0.00 42.56 4.57
2167 2334 0.177141 CCCTTGCATTTGCTCCATGG 59.823 55.000 4.97 4.97 42.66 3.66
2176 2346 3.731652 TTTGCTCCATGGAAACTGTTG 57.268 42.857 17.00 3.03 31.00 3.33
2177 2347 2.363306 TGCTCCATGGAAACTGTTGT 57.637 45.000 17.00 0.00 0.00 3.32
2237 2421 7.289549 AGTTAACTGAACTTACCCTGAACTAGT 59.710 37.037 7.48 0.00 46.79 2.57
2249 2433 5.186215 ACCCTGAACTAGTCTAAAGAGAAGC 59.814 44.000 0.00 0.00 31.96 3.86
2257 2441 8.047413 ACTAGTCTAAAGAGAAGCTAACTGAC 57.953 38.462 0.00 0.00 31.96 3.51
2309 2513 5.491982 GTGAACATCCTGTACAAGAGGAAT 58.508 41.667 12.81 1.61 43.01 3.01
2321 2525 2.310052 CAAGAGGAATGAGGGAGGGTTT 59.690 50.000 0.00 0.00 0.00 3.27
2501 2755 3.686726 GTGGTGTTTCATCAGATCAGACC 59.313 47.826 0.00 0.00 0.00 3.85
2502 2756 3.327464 TGGTGTTTCATCAGATCAGACCA 59.673 43.478 0.00 0.00 31.86 4.02
2503 2757 3.937706 GGTGTTTCATCAGATCAGACCAG 59.062 47.826 0.00 0.00 0.00 4.00
2504 2758 4.323028 GGTGTTTCATCAGATCAGACCAGA 60.323 45.833 0.00 0.00 0.00 3.86
2506 2760 4.284234 TGTTTCATCAGATCAGACCAGACA 59.716 41.667 0.00 0.00 0.00 3.41
2507 2761 4.732672 TTCATCAGATCAGACCAGACAG 57.267 45.455 0.00 0.00 0.00 3.51
2508 2762 3.706183 TCATCAGATCAGACCAGACAGT 58.294 45.455 0.00 0.00 0.00 3.55
2509 2763 3.698539 TCATCAGATCAGACCAGACAGTC 59.301 47.826 0.00 0.00 37.01 3.51
2510 2764 2.451490 TCAGATCAGACCAGACAGTCC 58.549 52.381 0.00 0.00 37.49 3.85
2511 2765 1.480137 CAGATCAGACCAGACAGTCCC 59.520 57.143 0.00 0.00 37.49 4.46
2512 2766 1.360852 AGATCAGACCAGACAGTCCCT 59.639 52.381 0.00 0.00 37.49 4.20
2513 2767 1.754226 GATCAGACCAGACAGTCCCTC 59.246 57.143 0.00 0.00 37.49 4.30
2514 2768 0.251832 TCAGACCAGACAGTCCCTCC 60.252 60.000 0.00 0.00 37.49 4.30
2515 2769 1.079438 AGACCAGACAGTCCCTCCC 59.921 63.158 0.00 0.00 37.49 4.30
2516 2770 1.079438 GACCAGACAGTCCCTCCCT 59.921 63.158 0.00 0.00 0.00 4.20
2517 2771 0.545548 GACCAGACAGTCCCTCCCTT 60.546 60.000 0.00 0.00 0.00 3.95
2580 2834 2.573009 ACTCATGATGATCCCACACACA 59.427 45.455 0.00 0.00 0.00 3.72
2581 2835 2.941064 CTCATGATGATCCCACACACAC 59.059 50.000 0.00 0.00 0.00 3.82
2582 2836 2.305343 TCATGATGATCCCACACACACA 59.695 45.455 0.00 0.00 0.00 3.72
2583 2837 2.183478 TGATGATCCCACACACACAC 57.817 50.000 0.00 0.00 0.00 3.82
2584 2838 1.419387 TGATGATCCCACACACACACA 59.581 47.619 0.00 0.00 0.00 3.72
2646 2920 6.468000 CAGTAATCGCCTAAAAATCGAAAACC 59.532 38.462 0.00 0.00 35.77 3.27
2691 2965 4.872691 TGCATAAGAAAGAAGCTGCTACTC 59.127 41.667 0.90 0.00 0.00 2.59
2694 2968 6.420604 GCATAAGAAAGAAGCTGCTACTCTAG 59.579 42.308 0.90 2.87 0.00 2.43
2697 2971 3.518634 AAGAAGCTGCTACTCTAGTGC 57.481 47.619 0.90 0.00 0.00 4.40
2698 2972 2.733956 AGAAGCTGCTACTCTAGTGCT 58.266 47.619 0.90 0.00 38.58 4.40
2726 3000 5.624344 AACATGTTTGAGCTGAGAATCTG 57.376 39.130 4.92 0.00 37.09 2.90
2798 3078 3.997681 TCCCAATATTACACACACACACG 59.002 43.478 0.00 0.00 0.00 4.49
2824 3124 2.793946 GCATACTGCTGCAACCCG 59.206 61.111 3.02 0.00 40.96 5.28
2848 3148 1.202627 GCCTGCCTACTCAGAATCTGG 60.203 57.143 10.71 3.94 36.19 3.86
2918 3272 3.838271 GCCATGGAGTCGGCGAGA 61.838 66.667 18.40 0.00 38.82 4.04
2937 3291 2.360475 GGAACCACAGGCCTCTGC 60.360 66.667 0.00 0.00 44.59 4.26
2938 3292 2.753029 GAACCACAGGCCTCTGCT 59.247 61.111 0.00 0.00 44.59 4.24
2967 3321 3.677648 CAAGCCAGCACCAGCCAC 61.678 66.667 0.00 0.00 43.56 5.01
2968 3322 4.982701 AAGCCAGCACCAGCCACC 62.983 66.667 0.00 0.00 43.56 4.61
2987 3341 3.019564 ACCAGCAAGAATTAGCCATGAC 58.980 45.455 0.00 0.00 0.00 3.06
2992 3346 5.009710 CAGCAAGAATTAGCCATGACATCAT 59.990 40.000 0.00 0.00 36.96 2.45
3009 3379 7.899973 TGACATCATGCATATAGTAGATGTGT 58.100 34.615 24.63 9.61 44.15 3.72
3022 3392 6.531503 AGTAGATGTGTGCACAATAGTAGT 57.468 37.500 23.59 11.10 45.41 2.73
3023 3393 7.640597 AGTAGATGTGTGCACAATAGTAGTA 57.359 36.000 23.59 4.34 45.41 1.82
3030 3405 5.872617 GTGTGCACAATAGTAGTATGAACCA 59.127 40.000 23.59 0.00 0.00 3.67
3053 3429 6.070881 CCATGATTGGGGTTTTCTGAAATACA 60.071 38.462 3.31 0.00 39.56 2.29
3055 3431 6.074648 TGATTGGGGTTTTCTGAAATACACT 58.925 36.000 3.31 0.00 0.00 3.55
3056 3432 7.235079 TGATTGGGGTTTTCTGAAATACACTA 58.765 34.615 3.31 2.33 0.00 2.74
3057 3433 7.393234 TGATTGGGGTTTTCTGAAATACACTAG 59.607 37.037 3.31 0.00 0.00 2.57
3058 3434 6.195600 TGGGGTTTTCTGAAATACACTAGT 57.804 37.500 3.31 0.00 0.00 2.57
3081 3457 0.037303 CAAAGCAAGGCAGGAGGAGA 59.963 55.000 0.00 0.00 0.00 3.71
3092 3468 0.461961 AGGAGGAGAAGCGTGCATAC 59.538 55.000 0.00 0.00 0.00 2.39
3093 3469 0.530870 GGAGGAGAAGCGTGCATACC 60.531 60.000 0.00 0.00 0.00 2.73
3094 3470 0.461961 GAGGAGAAGCGTGCATACCT 59.538 55.000 0.00 0.00 0.00 3.08
3095 3471 0.905357 AGGAGAAGCGTGCATACCTT 59.095 50.000 0.00 0.00 0.00 3.50
3118 3494 0.532640 TGATGGATTGGACGGCGATG 60.533 55.000 16.62 0.00 0.00 3.84
3154 3530 2.731587 AAGTTGCGGCGTGTTCATGC 62.732 55.000 9.37 8.31 0.00 4.06
3172 3548 1.835927 GCCTCACTCTTCCTGCAGGT 61.836 60.000 31.58 10.06 36.34 4.00
3178 3554 3.070018 CACTCTTCCTGCAGGTACAAAG 58.930 50.000 31.58 25.47 36.34 2.77
3179 3555 2.706190 ACTCTTCCTGCAGGTACAAAGT 59.294 45.455 31.58 23.04 36.34 2.66
3180 3556 3.901844 ACTCTTCCTGCAGGTACAAAGTA 59.098 43.478 31.58 15.41 36.34 2.24
3205 3588 6.609616 ACAAACCCAGAAAATGAAGGAAACTA 59.390 34.615 0.00 0.00 42.68 2.24
3206 3589 6.901081 AACCCAGAAAATGAAGGAAACTAG 57.099 37.500 0.00 0.00 42.68 2.57
3207 3590 5.953571 ACCCAGAAAATGAAGGAAACTAGT 58.046 37.500 0.00 0.00 42.68 2.57
3208 3591 7.086685 ACCCAGAAAATGAAGGAAACTAGTA 57.913 36.000 0.00 0.00 42.68 1.82
3209 3592 7.168905 ACCCAGAAAATGAAGGAAACTAGTAG 58.831 38.462 0.00 0.00 42.68 2.57
3210 3593 7.168905 CCCAGAAAATGAAGGAAACTAGTAGT 58.831 38.462 0.00 0.00 42.68 2.73
3211 3594 7.665974 CCCAGAAAATGAAGGAAACTAGTAGTT 59.334 37.037 9.85 9.85 42.68 2.24
3212 3595 8.507249 CCAGAAAATGAAGGAAACTAGTAGTTG 58.493 37.037 16.22 0.00 42.68 3.16
3213 3596 8.507249 CAGAAAATGAAGGAAACTAGTAGTTGG 58.493 37.037 16.22 0.00 42.68 3.77
3214 3597 7.665974 AGAAAATGAAGGAAACTAGTAGTTGGG 59.334 37.037 16.22 0.00 42.68 4.12
3215 3598 4.903045 TGAAGGAAACTAGTAGTTGGGG 57.097 45.455 16.22 0.00 42.68 4.96
3216 3599 3.008704 TGAAGGAAACTAGTAGTTGGGGC 59.991 47.826 16.22 6.61 42.68 5.80
3217 3600 1.553704 AGGAAACTAGTAGTTGGGGCG 59.446 52.381 16.22 0.00 38.66 6.13
3218 3601 1.366679 GAAACTAGTAGTTGGGGCGC 58.633 55.000 16.22 0.00 38.66 6.53
3219 3602 0.390735 AAACTAGTAGTTGGGGCGCG 60.391 55.000 16.22 0.00 38.66 6.86
3220 3603 2.585247 CTAGTAGTTGGGGCGCGC 60.585 66.667 25.94 25.94 0.00 6.86
3221 3604 4.151582 TAGTAGTTGGGGCGCGCC 62.152 66.667 41.63 41.63 0.00 6.53
3235 3618 2.358737 CGCCGCTTCCAAGGTCTT 60.359 61.111 0.00 0.00 0.00 3.01
3236 3619 1.966451 CGCCGCTTCCAAGGTCTTT 60.966 57.895 0.00 0.00 0.00 2.52
3237 3620 1.876664 GCCGCTTCCAAGGTCTTTC 59.123 57.895 0.00 0.00 0.00 2.62
3238 3621 0.606673 GCCGCTTCCAAGGTCTTTCT 60.607 55.000 0.00 0.00 0.00 2.52
3239 3622 1.897560 CCGCTTCCAAGGTCTTTCTT 58.102 50.000 0.00 0.00 0.00 2.52
3240 3623 2.230660 CCGCTTCCAAGGTCTTTCTTT 58.769 47.619 0.00 0.00 0.00 2.52
3241 3624 2.623416 CCGCTTCCAAGGTCTTTCTTTT 59.377 45.455 0.00 0.00 0.00 2.27
3242 3625 3.068165 CCGCTTCCAAGGTCTTTCTTTTT 59.932 43.478 0.00 0.00 0.00 1.94
3243 3626 4.277423 CCGCTTCCAAGGTCTTTCTTTTTA 59.723 41.667 0.00 0.00 0.00 1.52
3244 3627 5.212934 CGCTTCCAAGGTCTTTCTTTTTAC 58.787 41.667 0.00 0.00 0.00 2.01
3245 3628 5.008712 CGCTTCCAAGGTCTTTCTTTTTACT 59.991 40.000 0.00 0.00 0.00 2.24
3246 3629 6.204108 CGCTTCCAAGGTCTTTCTTTTTACTA 59.796 38.462 0.00 0.00 0.00 1.82
3247 3630 7.255001 CGCTTCCAAGGTCTTTCTTTTTACTAA 60.255 37.037 0.00 0.00 0.00 2.24
3248 3631 8.076781 GCTTCCAAGGTCTTTCTTTTTACTAAG 58.923 37.037 0.00 0.00 0.00 2.18
3249 3632 9.121658 CTTCCAAGGTCTTTCTTTTTACTAAGT 57.878 33.333 0.00 0.00 0.00 2.24
3269 3652 9.991906 ACTAAGTAAGTAATGTGCTTTAAGTGA 57.008 29.630 0.00 0.00 36.36 3.41
3271 3654 8.671384 AAGTAAGTAATGTGCTTTAAGTGACA 57.329 30.769 0.00 0.00 0.00 3.58
3272 3655 8.848474 AGTAAGTAATGTGCTTTAAGTGACAT 57.152 30.769 6.11 6.11 0.00 3.06
3273 3656 9.284968 AGTAAGTAATGTGCTTTAAGTGACATT 57.715 29.630 20.15 20.15 40.99 2.71
3274 3657 9.893305 GTAAGTAATGTGCTTTAAGTGACATTT 57.107 29.630 20.94 11.61 39.27 2.32
3276 3659 9.463443 AAGTAATGTGCTTTAAGTGACATTTTC 57.537 29.630 20.94 16.28 39.27 2.29
3277 3660 8.629158 AGTAATGTGCTTTAAGTGACATTTTCA 58.371 29.630 20.94 8.34 39.27 2.69
3278 3661 9.243637 GTAATGTGCTTTAAGTGACATTTTCAA 57.756 29.630 20.94 8.10 39.27 2.69
3279 3662 7.698836 ATGTGCTTTAAGTGACATTTTCAAC 57.301 32.000 6.11 0.00 35.39 3.18
3280 3663 6.625362 TGTGCTTTAAGTGACATTTTCAACA 58.375 32.000 0.00 0.00 35.39 3.33
3281 3664 6.751425 TGTGCTTTAAGTGACATTTTCAACAG 59.249 34.615 0.00 0.00 35.39 3.16
3282 3665 6.972328 GTGCTTTAAGTGACATTTTCAACAGA 59.028 34.615 0.00 0.00 35.39 3.41
3283 3666 7.649306 GTGCTTTAAGTGACATTTTCAACAGAT 59.351 33.333 0.00 0.00 35.39 2.90
3284 3667 7.862372 TGCTTTAAGTGACATTTTCAACAGATC 59.138 33.333 0.00 0.00 35.39 2.75
3285 3668 7.862372 GCTTTAAGTGACATTTTCAACAGATCA 59.138 33.333 0.00 0.00 35.39 2.92
3286 3669 9.734620 CTTTAAGTGACATTTTCAACAGATCAA 57.265 29.630 0.00 0.00 35.39 2.57
3288 3671 9.734620 TTAAGTGACATTTTCAACAGATCAAAG 57.265 29.630 0.00 0.00 35.39 2.77
3289 3672 6.211515 AGTGACATTTTCAACAGATCAAAGC 58.788 36.000 0.00 0.00 35.39 3.51
3290 3673 5.978919 GTGACATTTTCAACAGATCAAAGCA 59.021 36.000 0.00 0.00 35.39 3.91
3291 3674 6.143438 GTGACATTTTCAACAGATCAAAGCAG 59.857 38.462 0.00 0.00 35.39 4.24
3292 3675 4.986659 ACATTTTCAACAGATCAAAGCAGC 59.013 37.500 0.00 0.00 0.00 5.25
3293 3676 4.652421 TTTTCAACAGATCAAAGCAGCA 57.348 36.364 0.00 0.00 0.00 4.41
3294 3677 3.909776 TTCAACAGATCAAAGCAGCAG 57.090 42.857 0.00 0.00 0.00 4.24
3295 3678 3.130280 TCAACAGATCAAAGCAGCAGA 57.870 42.857 0.00 0.00 0.00 4.26
3296 3679 3.479489 TCAACAGATCAAAGCAGCAGAA 58.521 40.909 0.00 0.00 0.00 3.02
3297 3680 3.884693 TCAACAGATCAAAGCAGCAGAAA 59.115 39.130 0.00 0.00 0.00 2.52
3298 3681 4.521639 TCAACAGATCAAAGCAGCAGAAAT 59.478 37.500 0.00 0.00 0.00 2.17
3299 3682 4.436242 ACAGATCAAAGCAGCAGAAATG 57.564 40.909 0.00 0.00 0.00 2.32
3300 3683 3.179830 CAGATCAAAGCAGCAGAAATGC 58.820 45.455 0.00 0.00 44.18 3.56
3301 3684 2.823747 AGATCAAAGCAGCAGAAATGCA 59.176 40.909 2.73 0.00 46.31 3.96
3302 3685 3.257375 AGATCAAAGCAGCAGAAATGCAA 59.743 39.130 2.73 0.00 46.31 4.08
3303 3686 3.455990 TCAAAGCAGCAGAAATGCAAA 57.544 38.095 2.73 0.00 46.31 3.68
3304 3687 3.997762 TCAAAGCAGCAGAAATGCAAAT 58.002 36.364 2.73 0.00 46.31 2.32
3305 3688 4.382291 TCAAAGCAGCAGAAATGCAAATT 58.618 34.783 2.73 0.00 46.31 1.82
3306 3689 4.817464 TCAAAGCAGCAGAAATGCAAATTT 59.183 33.333 2.73 0.00 46.31 1.82
3307 3690 5.990386 TCAAAGCAGCAGAAATGCAAATTTA 59.010 32.000 2.73 0.00 46.31 1.40
3308 3691 6.651643 TCAAAGCAGCAGAAATGCAAATTTAT 59.348 30.769 2.73 0.00 46.31 1.40
3309 3692 6.657836 AAGCAGCAGAAATGCAAATTTATC 57.342 33.333 2.73 0.00 46.31 1.75
3310 3693 5.974108 AGCAGCAGAAATGCAAATTTATCT 58.026 33.333 2.73 0.00 46.31 1.98
3311 3694 7.104043 AGCAGCAGAAATGCAAATTTATCTA 57.896 32.000 2.73 0.00 46.31 1.98
3312 3695 7.201145 AGCAGCAGAAATGCAAATTTATCTAG 58.799 34.615 2.73 0.00 46.31 2.43
3313 3696 7.067859 AGCAGCAGAAATGCAAATTTATCTAGA 59.932 33.333 0.00 0.00 46.31 2.43
3314 3697 7.703621 GCAGCAGAAATGCAAATTTATCTAGAA 59.296 33.333 0.00 0.00 43.31 2.10
3315 3698 9.234384 CAGCAGAAATGCAAATTTATCTAGAAG 57.766 33.333 0.00 0.00 37.25 2.85
3316 3699 9.182214 AGCAGAAATGCAAATTTATCTAGAAGA 57.818 29.630 0.00 0.00 37.25 2.87
3317 3700 9.448294 GCAGAAATGCAAATTTATCTAGAAGAG 57.552 33.333 0.00 0.00 34.41 2.85
3324 3707 9.671279 TGCAAATTTATCTAGAAGAGAATCACA 57.329 29.630 0.00 0.00 37.85 3.58
3340 3723 9.698309 AGAGAATCACATTATAGACATTAACGG 57.302 33.333 0.00 0.00 37.82 4.44
3341 3724 8.833231 AGAATCACATTATAGACATTAACGGG 57.167 34.615 0.00 0.00 0.00 5.28
3342 3725 8.429641 AGAATCACATTATAGACATTAACGGGT 58.570 33.333 0.00 0.00 0.00 5.28
3343 3726 7.962964 ATCACATTATAGACATTAACGGGTG 57.037 36.000 0.00 0.00 0.00 4.61
3344 3727 5.756347 TCACATTATAGACATTAACGGGTGC 59.244 40.000 0.00 0.00 0.00 5.01
3345 3728 5.525745 CACATTATAGACATTAACGGGTGCA 59.474 40.000 0.00 0.00 0.00 4.57
3346 3729 6.204688 CACATTATAGACATTAACGGGTGCAT 59.795 38.462 0.00 0.00 0.00 3.96
3347 3730 7.386573 CACATTATAGACATTAACGGGTGCATA 59.613 37.037 0.00 0.00 0.00 3.14
3348 3731 8.100791 ACATTATAGACATTAACGGGTGCATAT 58.899 33.333 0.00 0.00 0.00 1.78
3349 3732 7.899178 TTATAGACATTAACGGGTGCATATG 57.101 36.000 0.00 0.00 0.00 1.78
3350 3733 2.878406 AGACATTAACGGGTGCATATGC 59.122 45.455 21.09 21.09 42.50 3.14
3371 3754 5.789710 GCAAAAGGCAAGTAGTATTACGA 57.210 39.130 0.00 0.00 43.97 3.43
3372 3755 6.359480 GCAAAAGGCAAGTAGTATTACGAT 57.641 37.500 0.00 0.00 43.97 3.73
3373 3756 7.473027 GCAAAAGGCAAGTAGTATTACGATA 57.527 36.000 0.00 0.00 43.97 2.92
3374 3757 8.084590 GCAAAAGGCAAGTAGTATTACGATAT 57.915 34.615 0.00 0.00 43.97 1.63
3375 3758 9.199982 GCAAAAGGCAAGTAGTATTACGATATA 57.800 33.333 0.00 0.00 43.97 0.86
3399 3782 9.950680 ATAATCATGTCAAAACAATATCGGTTC 57.049 29.630 0.00 0.00 39.30 3.62
3400 3783 6.189677 TCATGTCAAAACAATATCGGTTCC 57.810 37.500 0.00 0.00 39.30 3.62
3401 3784 5.707764 TCATGTCAAAACAATATCGGTTCCA 59.292 36.000 0.00 0.00 39.30 3.53
3402 3785 6.207614 TCATGTCAAAACAATATCGGTTCCAA 59.792 34.615 0.00 0.00 39.30 3.53
3403 3786 5.764131 TGTCAAAACAATATCGGTTCCAAC 58.236 37.500 0.00 0.00 30.70 3.77
3404 3787 5.533154 TGTCAAAACAATATCGGTTCCAACT 59.467 36.000 0.00 0.00 30.70 3.16
3405 3788 5.856455 GTCAAAACAATATCGGTTCCAACTG 59.144 40.000 0.00 0.00 36.62 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 53 3.791545 ACTGTATCCTCTCCTCTCCTTCT 59.208 47.826 0.00 0.00 0.00 2.85
345 367 3.823330 CTAACGGCGCTCCCTCGT 61.823 66.667 6.90 4.83 38.89 4.18
426 448 3.947626 AGTTGACGAATTGACCGTTTTG 58.052 40.909 0.00 0.00 40.67 2.44
501 524 5.370679 GTCCCACAGAACTACCACTTTTTA 58.629 41.667 0.00 0.00 0.00 1.52
564 589 6.183360 CGTCTAGTCTCGTCTATCCAAAGAAA 60.183 42.308 0.00 0.00 0.00 2.52
567 592 4.571580 ACGTCTAGTCTCGTCTATCCAAAG 59.428 45.833 5.04 0.00 35.30 2.77
569 594 4.134379 ACGTCTAGTCTCGTCTATCCAA 57.866 45.455 5.04 0.00 35.30 3.53
570 595 3.815856 ACGTCTAGTCTCGTCTATCCA 57.184 47.619 5.04 0.00 35.30 3.41
571 596 3.668191 CGTACGTCTAGTCTCGTCTATCC 59.332 52.174 7.22 0.72 40.70 2.59
572 597 4.532276 TCGTACGTCTAGTCTCGTCTATC 58.468 47.826 16.05 4.30 40.70 2.08
573 598 4.560136 TCGTACGTCTAGTCTCGTCTAT 57.440 45.455 16.05 0.00 40.70 1.98
574 599 4.286101 CATCGTACGTCTAGTCTCGTCTA 58.714 47.826 16.05 0.00 40.70 2.59
575 600 2.929531 TCGTACGTCTAGTCTCGTCT 57.070 50.000 16.05 0.00 40.70 4.18
576 601 2.218302 CCATCGTACGTCTAGTCTCGTC 59.782 54.545 16.05 5.87 40.70 4.20
577 602 2.200067 CCATCGTACGTCTAGTCTCGT 58.800 52.381 16.05 12.71 42.82 4.18
578 603 2.200067 ACCATCGTACGTCTAGTCTCG 58.800 52.381 16.05 0.00 33.76 4.04
579 604 4.987285 TGATACCATCGTACGTCTAGTCTC 59.013 45.833 16.05 10.89 0.00 3.36
580 605 4.953667 TGATACCATCGTACGTCTAGTCT 58.046 43.478 16.05 2.03 0.00 3.24
581 606 4.749099 ACTGATACCATCGTACGTCTAGTC 59.251 45.833 16.05 8.46 0.00 2.59
582 607 4.701765 ACTGATACCATCGTACGTCTAGT 58.298 43.478 16.05 11.06 0.00 2.57
583 608 5.441543 CAACTGATACCATCGTACGTCTAG 58.558 45.833 16.05 5.54 0.00 2.43
584 609 4.274214 CCAACTGATACCATCGTACGTCTA 59.726 45.833 16.05 0.00 0.00 2.59
585 610 3.066342 CCAACTGATACCATCGTACGTCT 59.934 47.826 16.05 0.89 0.00 4.18
586 611 3.065786 TCCAACTGATACCATCGTACGTC 59.934 47.826 16.05 4.72 0.00 4.34
587 612 3.018856 TCCAACTGATACCATCGTACGT 58.981 45.455 16.05 0.00 0.00 3.57
588 613 3.703286 TCCAACTGATACCATCGTACG 57.297 47.619 9.53 9.53 0.00 3.67
589 614 4.750098 CCAATCCAACTGATACCATCGTAC 59.250 45.833 0.00 0.00 31.83 3.67
590 615 4.651962 TCCAATCCAACTGATACCATCGTA 59.348 41.667 0.00 0.00 31.83 3.43
591 616 3.454447 TCCAATCCAACTGATACCATCGT 59.546 43.478 0.00 0.00 31.83 3.73
592 617 4.071961 TCCAATCCAACTGATACCATCG 57.928 45.455 0.00 0.00 31.83 3.84
593 618 6.239120 CCAAATCCAATCCAACTGATACCATC 60.239 42.308 0.00 0.00 31.83 3.51
594 619 5.599656 CCAAATCCAATCCAACTGATACCAT 59.400 40.000 0.00 0.00 31.83 3.55
595 620 4.955450 CCAAATCCAATCCAACTGATACCA 59.045 41.667 0.00 0.00 31.83 3.25
596 621 5.200483 TCCAAATCCAATCCAACTGATACC 58.800 41.667 0.00 0.00 31.83 2.73
597 622 6.966534 ATCCAAATCCAATCCAACTGATAC 57.033 37.500 0.00 0.00 31.83 2.24
598 623 7.147689 CCAAATCCAAATCCAATCCAACTGATA 60.148 37.037 0.00 0.00 31.83 2.15
599 624 6.352394 CCAAATCCAAATCCAATCCAACTGAT 60.352 38.462 0.00 0.00 34.22 2.90
600 625 5.046448 CCAAATCCAAATCCAATCCAACTGA 60.046 40.000 0.00 0.00 0.00 3.41
601 626 5.046448 TCCAAATCCAAATCCAATCCAACTG 60.046 40.000 0.00 0.00 0.00 3.16
602 627 5.092968 TCCAAATCCAAATCCAATCCAACT 58.907 37.500 0.00 0.00 0.00 3.16
603 628 5.419239 TCCAAATCCAAATCCAATCCAAC 57.581 39.130 0.00 0.00 0.00 3.77
604 629 6.639590 AATCCAAATCCAAATCCAATCCAA 57.360 33.333 0.00 0.00 0.00 3.53
605 630 6.416415 CAAATCCAAATCCAAATCCAATCCA 58.584 36.000 0.00 0.00 0.00 3.41
606 631 5.824097 CCAAATCCAAATCCAAATCCAATCC 59.176 40.000 0.00 0.00 0.00 3.01
607 632 6.652053 TCCAAATCCAAATCCAAATCCAATC 58.348 36.000 0.00 0.00 0.00 2.67
608 633 6.639590 TCCAAATCCAAATCCAAATCCAAT 57.360 33.333 0.00 0.00 0.00 3.16
609 634 6.416415 CATCCAAATCCAAATCCAAATCCAA 58.584 36.000 0.00 0.00 0.00 3.53
610 635 5.629600 GCATCCAAATCCAAATCCAAATCCA 60.630 40.000 0.00 0.00 0.00 3.41
611 636 4.818005 GCATCCAAATCCAAATCCAAATCC 59.182 41.667 0.00 0.00 0.00 3.01
612 637 5.430007 TGCATCCAAATCCAAATCCAAATC 58.570 37.500 0.00 0.00 0.00 2.17
613 638 5.433526 CTGCATCCAAATCCAAATCCAAAT 58.566 37.500 0.00 0.00 0.00 2.32
614 639 4.834534 CTGCATCCAAATCCAAATCCAAA 58.165 39.130 0.00 0.00 0.00 3.28
615 640 3.369681 GCTGCATCCAAATCCAAATCCAA 60.370 43.478 0.00 0.00 0.00 3.53
616 641 2.168936 GCTGCATCCAAATCCAAATCCA 59.831 45.455 0.00 0.00 0.00 3.41
617 642 2.800629 CGCTGCATCCAAATCCAAATCC 60.801 50.000 0.00 0.00 0.00 3.01
618 643 2.466846 CGCTGCATCCAAATCCAAATC 58.533 47.619 0.00 0.00 0.00 2.17
619 644 1.137479 CCGCTGCATCCAAATCCAAAT 59.863 47.619 0.00 0.00 0.00 2.32
620 645 0.531657 CCGCTGCATCCAAATCCAAA 59.468 50.000 0.00 0.00 0.00 3.28
642 667 2.354821 ACGTTTCTTTCTGACAGCAACC 59.645 45.455 0.00 0.00 0.00 3.77
678 703 4.340246 TCTGCACCTGCCTGCCTG 62.340 66.667 0.00 0.00 41.18 4.85
679 704 4.341783 GTCTGCACCTGCCTGCCT 62.342 66.667 0.00 0.00 41.18 4.75
724 750 3.782443 GGCCGTGGGGACAGTAGG 61.782 72.222 0.00 0.00 42.95 3.18
767 793 2.578714 GCCGGGAAATGCCAAACCA 61.579 57.895 2.18 0.00 38.95 3.67
768 794 2.264480 GCCGGGAAATGCCAAACC 59.736 61.111 2.18 0.00 38.95 3.27
784 810 4.237349 TGATTTTCCTTTCTTTCACCGC 57.763 40.909 0.00 0.00 0.00 5.68
785 811 6.681777 AGATTGATTTTCCTTTCTTTCACCG 58.318 36.000 0.00 0.00 0.00 4.94
786 812 6.803807 CGAGATTGATTTTCCTTTCTTTCACC 59.196 38.462 0.00 0.00 0.00 4.02
792 818 5.645497 CCACTCGAGATTGATTTTCCTTTCT 59.355 40.000 21.68 0.00 0.00 2.52
798 824 6.516718 TCCTATCCACTCGAGATTGATTTTC 58.483 40.000 21.68 0.00 0.00 2.29
805 831 5.258051 GTCCTATCCTATCCACTCGAGATT 58.742 45.833 21.68 2.96 0.00 2.40
806 832 4.324719 GGTCCTATCCTATCCACTCGAGAT 60.325 50.000 21.68 5.04 0.00 2.75
807 833 3.009253 GGTCCTATCCTATCCACTCGAGA 59.991 52.174 21.68 0.00 0.00 4.04
808 834 3.244946 TGGTCCTATCCTATCCACTCGAG 60.245 52.174 11.84 11.84 0.00 4.04
809 835 2.714793 TGGTCCTATCCTATCCACTCGA 59.285 50.000 0.00 0.00 0.00 4.04
810 836 3.156288 TGGTCCTATCCTATCCACTCG 57.844 52.381 0.00 0.00 0.00 4.18
870 912 6.161855 TGTTTGTAGAGAAGAGAAGAGCAA 57.838 37.500 0.00 0.00 0.00 3.91
879 921 8.183104 TCTCTGAATCTTGTTTGTAGAGAAGA 57.817 34.615 0.00 0.00 37.02 2.87
880 922 8.824159 TTCTCTGAATCTTGTTTGTAGAGAAG 57.176 34.615 0.00 0.00 41.93 2.85
882 924 8.037758 GGATTCTCTGAATCTTGTTTGTAGAGA 58.962 37.037 16.62 0.00 37.87 3.10
891 939 6.070951 TGGATTGGATTCTCTGAATCTTGT 57.929 37.500 16.62 6.11 0.00 3.16
901 949 4.140536 GGATTGGACTGGATTGGATTCTC 58.859 47.826 0.00 0.00 0.00 2.87
971 1019 2.693591 ACGGACAGAGAGAAAGACACAA 59.306 45.455 0.00 0.00 0.00 3.33
985 1033 1.066303 GCTCATCTACTGGACGGACAG 59.934 57.143 7.02 7.02 44.03 3.51
1289 1399 4.873810 TGGGGAATCCATGGCGCG 62.874 66.667 6.96 0.00 41.46 6.86
1320 1432 4.441695 CTGCGAGCGAGCCCAAGA 62.442 66.667 4.10 0.00 36.02 3.02
1610 1724 4.980805 TTGAGGTGGCGCACGTCC 62.981 66.667 21.37 13.21 45.15 4.79
1744 1865 2.280797 TCACCTTGGTGAGCACGC 60.281 61.111 17.57 0.00 0.00 5.34
1769 1902 6.270815 CAAGCAAAATAGATGGATTGGTCTG 58.729 40.000 0.00 0.00 32.83 3.51
1770 1903 5.163478 GCAAGCAAAATAGATGGATTGGTCT 60.163 40.000 0.00 0.00 32.83 3.85
1771 1904 5.045872 GCAAGCAAAATAGATGGATTGGTC 58.954 41.667 0.00 0.00 32.83 4.02
1773 1906 4.046462 CGCAAGCAAAATAGATGGATTGG 58.954 43.478 0.00 0.00 0.00 3.16
1779 1912 4.100529 CCTGAACGCAAGCAAAATAGATG 58.899 43.478 0.00 0.00 45.62 2.90
1784 1917 3.451141 TTTCCTGAACGCAAGCAAAAT 57.549 38.095 0.00 0.00 45.62 1.82
1786 1919 2.949451 TTTTCCTGAACGCAAGCAAA 57.051 40.000 0.00 0.00 45.62 3.68
1789 1922 1.063031 GCATTTTCCTGAACGCAAGC 58.937 50.000 0.00 0.00 45.62 4.01
1791 1924 1.035923 TGGCATTTTCCTGAACGCAA 58.964 45.000 0.00 0.00 0.00 4.85
1795 1928 3.733443 ACAAGTGGCATTTTCCTGAAC 57.267 42.857 0.00 0.00 0.00 3.18
1835 1974 9.213799 GGTGAATGAATAAAAGGTGCAAAATTA 57.786 29.630 0.00 0.00 0.00 1.40
1997 2148 1.674221 GCACAACCTGCAAACCAACAA 60.674 47.619 0.00 0.00 46.29 2.83
2088 2242 1.919240 TCCTGAAGGCGTAGAAGTCA 58.081 50.000 0.00 0.00 34.44 3.41
2121 2275 1.518056 AATGGTGCAGCAAGGACGTG 61.518 55.000 24.18 0.00 39.86 4.49
2136 2297 2.125832 CAAGGGCAAGCGCAATGG 60.126 61.111 11.47 0.00 41.24 3.16
2149 2316 1.187974 TCCATGGAGCAAATGCAAGG 58.812 50.000 11.44 2.24 45.16 3.61
2167 2334 4.683781 TGAGTTGTGCAAAACAACAGTTTC 59.316 37.500 21.66 8.95 44.97 2.78
2176 2346 6.944557 AAGTTAAGTTGAGTTGTGCAAAAC 57.055 33.333 12.10 12.10 0.00 2.43
2177 2347 8.682710 AGATAAGTTAAGTTGAGTTGTGCAAAA 58.317 29.630 5.77 0.00 0.00 2.44
2179 2349 7.497579 TCAGATAAGTTAAGTTGAGTTGTGCAA 59.502 33.333 5.77 0.00 0.00 4.08
2212 2382 7.440198 ACTAGTTCAGGGTAAGTTCAGTTAAC 58.560 38.462 0.00 0.00 38.46 2.01
2214 2384 7.008941 AGACTAGTTCAGGGTAAGTTCAGTTA 58.991 38.462 0.00 0.00 0.00 2.24
2226 2406 5.420739 AGCTTCTCTTTAGACTAGTTCAGGG 59.579 44.000 0.00 0.00 0.00 4.45
2237 2421 6.010850 TCAGGTCAGTTAGCTTCTCTTTAGA 58.989 40.000 0.00 0.00 32.16 2.10
2249 2433 2.632996 TCCCACAGTTCAGGTCAGTTAG 59.367 50.000 0.00 0.00 0.00 2.34
2257 2441 1.806542 CATTTCGTCCCACAGTTCAGG 59.193 52.381 0.00 0.00 0.00 3.86
2309 2513 2.121506 AGCCCAAACCCTCCCTCA 60.122 61.111 0.00 0.00 0.00 3.86
2411 2634 1.001406 AGCTAGTGAGTGACTTGGTGC 59.999 52.381 0.00 0.00 36.87 5.01
2501 2755 1.190643 GAGAAGGGAGGGACTGTCTG 58.809 60.000 7.85 0.00 41.55 3.51
2502 2756 0.041982 GGAGAAGGGAGGGACTGTCT 59.958 60.000 7.85 0.00 41.55 3.41
2503 2757 0.978667 GGGAGAAGGGAGGGACTGTC 60.979 65.000 0.00 0.00 41.55 3.51
2504 2758 1.081277 GGGAGAAGGGAGGGACTGT 59.919 63.158 0.00 0.00 41.55 3.55
2507 2761 0.547954 ACAAGGGAGAAGGGAGGGAC 60.548 60.000 0.00 0.00 0.00 4.46
2508 2762 0.547712 CACAAGGGAGAAGGGAGGGA 60.548 60.000 0.00 0.00 0.00 4.20
2509 2763 1.994463 CACAAGGGAGAAGGGAGGG 59.006 63.158 0.00 0.00 0.00 4.30
2510 2764 1.301293 GCACAAGGGAGAAGGGAGG 59.699 63.158 0.00 0.00 0.00 4.30
2511 2765 0.401738 TTGCACAAGGGAGAAGGGAG 59.598 55.000 0.00 0.00 0.00 4.30
2512 2766 0.850100 TTTGCACAAGGGAGAAGGGA 59.150 50.000 0.00 0.00 0.00 4.20
2513 2767 1.928868 ATTTGCACAAGGGAGAAGGG 58.071 50.000 0.00 0.00 0.00 3.95
2514 2768 4.280677 TGTTAATTTGCACAAGGGAGAAGG 59.719 41.667 0.00 0.00 0.00 3.46
2515 2769 5.241506 TCTGTTAATTTGCACAAGGGAGAAG 59.758 40.000 0.00 0.00 0.00 2.85
2516 2770 5.009610 GTCTGTTAATTTGCACAAGGGAGAA 59.990 40.000 0.00 0.00 0.00 2.87
2517 2771 4.518970 GTCTGTTAATTTGCACAAGGGAGA 59.481 41.667 0.00 0.00 0.00 3.71
2631 2905 4.783764 AGGGCAGGTTTTCGATTTTTAG 57.216 40.909 0.00 0.00 0.00 1.85
2646 2920 0.035881 TCAGAGCTTCACAAGGGCAG 59.964 55.000 0.00 0.00 0.00 4.85
2691 2965 7.118390 AGCTCAAACATGTTTTACTAGCACTAG 59.882 37.037 28.46 14.67 39.04 2.57
2694 2968 5.853282 CAGCTCAAACATGTTTTACTAGCAC 59.147 40.000 28.46 13.97 30.41 4.40
2697 2971 7.658179 TCTCAGCTCAAACATGTTTTACTAG 57.342 36.000 21.10 15.72 0.00 2.57
2698 2972 8.621532 ATTCTCAGCTCAAACATGTTTTACTA 57.378 30.769 21.10 6.66 0.00 1.82
2815 3115 2.690778 GCAGGCTAACGGGTTGCAG 61.691 63.158 1.30 0.00 34.99 4.41
2824 3124 3.386402 AGATTCTGAGTAGGCAGGCTAAC 59.614 47.826 5.02 4.07 36.55 2.34
2918 3272 1.687612 CAGAGGCCTGTGGTTCCAT 59.312 57.895 22.16 0.00 35.70 3.41
2937 3291 3.184683 GCTTGCGCAGGTCGAGAG 61.185 66.667 21.36 10.01 41.67 3.20
2938 3292 4.742201 GGCTTGCGCAGGTCGAGA 62.742 66.667 21.36 0.00 41.67 4.04
2965 3319 3.018856 TCATGGCTAATTCTTGCTGGTG 58.981 45.455 0.00 0.00 0.00 4.17
2966 3320 3.019564 GTCATGGCTAATTCTTGCTGGT 58.980 45.455 0.00 0.00 0.00 4.00
2967 3321 3.018856 TGTCATGGCTAATTCTTGCTGG 58.981 45.455 0.00 0.00 0.00 4.85
2968 3322 4.337274 TGATGTCATGGCTAATTCTTGCTG 59.663 41.667 0.00 0.00 0.00 4.41
2969 3323 4.529897 TGATGTCATGGCTAATTCTTGCT 58.470 39.130 0.00 0.00 0.00 3.91
2970 3324 4.906065 TGATGTCATGGCTAATTCTTGC 57.094 40.909 0.00 0.00 0.00 4.01
2987 3341 6.592607 TGCACACATCTACTATATGCATGATG 59.407 38.462 10.16 14.33 36.72 3.07
2992 3346 5.275067 TGTGCACACATCTACTATATGCA 57.725 39.130 17.42 0.00 39.16 3.96
2993 3347 6.791887 ATTGTGCACACATCTACTATATGC 57.208 37.500 21.56 0.00 41.52 3.14
3009 3379 6.883744 TCATGGTTCATACTACTATTGTGCA 58.116 36.000 0.00 0.00 0.00 4.57
3021 3391 5.422012 AGAAAACCCCAATCATGGTTCATAC 59.578 40.000 0.00 0.00 43.94 2.39
3022 3392 5.421693 CAGAAAACCCCAATCATGGTTCATA 59.578 40.000 0.00 0.00 43.94 2.15
3023 3393 4.223477 CAGAAAACCCCAATCATGGTTCAT 59.777 41.667 0.00 0.00 43.94 2.57
3030 3405 6.725834 AGTGTATTTCAGAAAACCCCAATCAT 59.274 34.615 0.00 0.00 0.00 2.45
3053 3429 3.403038 CTGCCTTGCTTTGTACACTAGT 58.597 45.455 0.00 0.00 0.00 2.57
3055 3431 2.370519 TCCTGCCTTGCTTTGTACACTA 59.629 45.455 0.00 0.00 0.00 2.74
3056 3432 1.142870 TCCTGCCTTGCTTTGTACACT 59.857 47.619 0.00 0.00 0.00 3.55
3057 3433 1.537202 CTCCTGCCTTGCTTTGTACAC 59.463 52.381 0.00 0.00 0.00 2.90
3058 3434 1.545428 CCTCCTGCCTTGCTTTGTACA 60.545 52.381 0.00 0.00 0.00 2.90
3061 3437 0.251077 CTCCTCCTGCCTTGCTTTGT 60.251 55.000 0.00 0.00 0.00 2.83
3081 3457 1.003118 TCAAGGAAGGTATGCACGCTT 59.997 47.619 0.00 0.00 0.00 4.68
3154 3530 1.205893 GTACCTGCAGGAAGAGTGAGG 59.794 57.143 39.19 9.95 38.94 3.86
3172 3548 7.883391 TCATTTTCTGGGTTTGTACTTTGTA 57.117 32.000 0.00 0.00 0.00 2.41
3178 3554 6.399639 TTCCTTCATTTTCTGGGTTTGTAC 57.600 37.500 0.00 0.00 0.00 2.90
3179 3555 6.609616 AGTTTCCTTCATTTTCTGGGTTTGTA 59.390 34.615 0.00 0.00 0.00 2.41
3180 3556 5.425217 AGTTTCCTTCATTTTCTGGGTTTGT 59.575 36.000 0.00 0.00 0.00 2.83
3218 3601 1.912371 GAAAGACCTTGGAAGCGGCG 61.912 60.000 0.51 0.51 0.00 6.46
3219 3602 0.606673 AGAAAGACCTTGGAAGCGGC 60.607 55.000 0.00 0.00 0.00 6.53
3220 3603 1.897560 AAGAAAGACCTTGGAAGCGG 58.102 50.000 0.00 0.00 0.00 5.52
3221 3604 3.990318 AAAAGAAAGACCTTGGAAGCG 57.010 42.857 0.00 0.00 0.00 4.68
3222 3605 6.392625 AGTAAAAAGAAAGACCTTGGAAGC 57.607 37.500 0.00 0.00 0.00 3.86
3223 3606 9.121658 ACTTAGTAAAAAGAAAGACCTTGGAAG 57.878 33.333 0.00 0.00 0.00 3.46
3243 3626 9.991906 TCACTTAAAGCACATTACTTACTTAGT 57.008 29.630 0.00 0.00 41.04 2.24
3245 3628 9.767228 TGTCACTTAAAGCACATTACTTACTTA 57.233 29.630 0.00 0.00 0.00 2.24
3246 3629 8.671384 TGTCACTTAAAGCACATTACTTACTT 57.329 30.769 0.00 0.00 0.00 2.24
3247 3630 8.848474 ATGTCACTTAAAGCACATTACTTACT 57.152 30.769 0.00 0.00 0.00 2.24
3248 3631 9.893305 AAATGTCACTTAAAGCACATTACTTAC 57.107 29.630 6.56 0.00 38.28 2.34
3250 3633 9.463443 GAAAATGTCACTTAAAGCACATTACTT 57.537 29.630 6.56 0.66 38.28 2.24
3251 3634 8.629158 TGAAAATGTCACTTAAAGCACATTACT 58.371 29.630 6.56 0.00 38.28 2.24
3252 3635 8.795786 TGAAAATGTCACTTAAAGCACATTAC 57.204 30.769 6.56 5.67 38.28 1.89
3253 3636 9.243637 GTTGAAAATGTCACTTAAAGCACATTA 57.756 29.630 6.56 0.00 38.28 1.90
3254 3637 7.763528 TGTTGAAAATGTCACTTAAAGCACATT 59.236 29.630 0.00 0.00 40.43 2.71
3255 3638 7.264221 TGTTGAAAATGTCACTTAAAGCACAT 58.736 30.769 0.00 0.00 35.39 3.21
3256 3639 6.625362 TGTTGAAAATGTCACTTAAAGCACA 58.375 32.000 0.00 0.00 35.39 4.57
3257 3640 6.972328 TCTGTTGAAAATGTCACTTAAAGCAC 59.028 34.615 0.00 0.00 35.39 4.40
3258 3641 7.094508 TCTGTTGAAAATGTCACTTAAAGCA 57.905 32.000 0.00 0.00 35.39 3.91
3259 3642 7.862372 TGATCTGTTGAAAATGTCACTTAAAGC 59.138 33.333 0.00 0.00 35.39 3.51
3260 3643 9.734620 TTGATCTGTTGAAAATGTCACTTAAAG 57.265 29.630 0.00 0.00 35.39 1.85
3262 3645 9.734620 CTTTGATCTGTTGAAAATGTCACTTAA 57.265 29.630 0.00 0.00 35.39 1.85
3263 3646 7.862372 GCTTTGATCTGTTGAAAATGTCACTTA 59.138 33.333 0.00 0.00 35.39 2.24
3264 3647 6.698766 GCTTTGATCTGTTGAAAATGTCACTT 59.301 34.615 0.00 0.00 35.39 3.16
3265 3648 6.183360 TGCTTTGATCTGTTGAAAATGTCACT 60.183 34.615 0.00 0.00 35.39 3.41
3266 3649 5.978919 TGCTTTGATCTGTTGAAAATGTCAC 59.021 36.000 0.00 0.00 35.39 3.67
3267 3650 6.146601 TGCTTTGATCTGTTGAAAATGTCA 57.853 33.333 0.00 0.00 0.00 3.58
3268 3651 5.118203 GCTGCTTTGATCTGTTGAAAATGTC 59.882 40.000 0.00 0.00 0.00 3.06
3269 3652 4.986659 GCTGCTTTGATCTGTTGAAAATGT 59.013 37.500 0.00 0.00 0.00 2.71
3270 3653 4.986034 TGCTGCTTTGATCTGTTGAAAATG 59.014 37.500 0.00 0.00 0.00 2.32
3271 3654 5.010314 TCTGCTGCTTTGATCTGTTGAAAAT 59.990 36.000 0.00 0.00 0.00 1.82
3272 3655 4.338964 TCTGCTGCTTTGATCTGTTGAAAA 59.661 37.500 0.00 0.00 0.00 2.29
3273 3656 3.884693 TCTGCTGCTTTGATCTGTTGAAA 59.115 39.130 0.00 0.00 0.00 2.69
3274 3657 3.479489 TCTGCTGCTTTGATCTGTTGAA 58.521 40.909 0.00 0.00 0.00 2.69
3275 3658 3.130280 TCTGCTGCTTTGATCTGTTGA 57.870 42.857 0.00 0.00 0.00 3.18
3276 3659 3.909776 TTCTGCTGCTTTGATCTGTTG 57.090 42.857 0.00 0.00 0.00 3.33
3277 3660 4.806330 CATTTCTGCTGCTTTGATCTGTT 58.194 39.130 0.00 0.00 0.00 3.16
3278 3661 3.367087 GCATTTCTGCTGCTTTGATCTGT 60.367 43.478 0.00 0.00 45.32 3.41
3279 3662 3.179830 GCATTTCTGCTGCTTTGATCTG 58.820 45.455 0.00 0.00 45.32 2.90
3280 3663 3.505464 GCATTTCTGCTGCTTTGATCT 57.495 42.857 0.00 0.00 45.32 2.75
3298 3681 9.671279 TGTGATTCTCTTCTAGATAAATTTGCA 57.329 29.630 0.00 0.00 33.05 4.08
3314 3697 9.698309 CCGTTAATGTCTATAATGTGATTCTCT 57.302 33.333 0.00 0.00 0.00 3.10
3315 3698 8.926710 CCCGTTAATGTCTATAATGTGATTCTC 58.073 37.037 0.00 0.00 0.00 2.87
3316 3699 8.429641 ACCCGTTAATGTCTATAATGTGATTCT 58.570 33.333 0.00 0.00 0.00 2.40
3317 3700 8.495949 CACCCGTTAATGTCTATAATGTGATTC 58.504 37.037 0.00 0.00 0.00 2.52
3318 3701 7.041372 GCACCCGTTAATGTCTATAATGTGATT 60.041 37.037 0.00 0.00 0.00 2.57
3319 3702 6.426937 GCACCCGTTAATGTCTATAATGTGAT 59.573 38.462 0.00 0.00 0.00 3.06
3320 3703 5.756347 GCACCCGTTAATGTCTATAATGTGA 59.244 40.000 0.00 0.00 0.00 3.58
3321 3704 5.525745 TGCACCCGTTAATGTCTATAATGTG 59.474 40.000 0.00 0.00 0.00 3.21
3322 3705 5.676552 TGCACCCGTTAATGTCTATAATGT 58.323 37.500 0.00 0.00 0.00 2.71
3323 3706 6.801539 ATGCACCCGTTAATGTCTATAATG 57.198 37.500 0.00 0.00 0.00 1.90
3324 3707 7.065803 GCATATGCACCCGTTAATGTCTATAAT 59.934 37.037 22.84 0.00 41.59 1.28
3325 3708 6.370442 GCATATGCACCCGTTAATGTCTATAA 59.630 38.462 22.84 0.00 41.59 0.98
3326 3709 5.872617 GCATATGCACCCGTTAATGTCTATA 59.127 40.000 22.84 0.00 41.59 1.31
3327 3710 4.695455 GCATATGCACCCGTTAATGTCTAT 59.305 41.667 22.84 0.00 41.59 1.98
3328 3711 4.062293 GCATATGCACCCGTTAATGTCTA 58.938 43.478 22.84 0.00 41.59 2.59
3329 3712 2.878406 GCATATGCACCCGTTAATGTCT 59.122 45.455 22.84 0.00 41.59 3.41
3330 3713 3.268013 GCATATGCACCCGTTAATGTC 57.732 47.619 22.84 0.00 41.59 3.06
3349 3732 5.789710 TCGTAATACTACTTGCCTTTTGC 57.210 39.130 0.00 0.00 41.77 3.68
3373 3756 9.950680 GAACCGATATTGTTTTGACATGATTAT 57.049 29.630 0.00 0.00 0.00 1.28
3374 3757 8.402472 GGAACCGATATTGTTTTGACATGATTA 58.598 33.333 0.00 0.00 0.00 1.75
3375 3758 7.093988 TGGAACCGATATTGTTTTGACATGATT 60.094 33.333 0.00 0.00 0.00 2.57
3376 3759 6.376864 TGGAACCGATATTGTTTTGACATGAT 59.623 34.615 0.00 0.00 0.00 2.45
3377 3760 5.707764 TGGAACCGATATTGTTTTGACATGA 59.292 36.000 0.00 0.00 0.00 3.07
3378 3761 5.948588 TGGAACCGATATTGTTTTGACATG 58.051 37.500 0.00 0.00 0.00 3.21
3379 3762 6.208599 AGTTGGAACCGATATTGTTTTGACAT 59.791 34.615 0.00 0.00 0.00 3.06
3380 3763 5.533154 AGTTGGAACCGATATTGTTTTGACA 59.467 36.000 0.00 0.00 0.00 3.58
3381 3764 5.856455 CAGTTGGAACCGATATTGTTTTGAC 59.144 40.000 0.00 0.00 0.00 3.18
3382 3765 6.007936 CAGTTGGAACCGATATTGTTTTGA 57.992 37.500 0.00 0.00 0.00 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.