Multiple sequence alignment - TraesCS4A01G320000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G320000 chr4A 100.000 8032 0 0 1 8032 608827643 608835674 0.000000e+00 14833.0
1 TraesCS4A01G320000 chr4A 96.610 59 1 1 3326 3383 185435373 185435431 6.630000e-16 97.1
2 TraesCS4A01G320000 chr4A 100.000 47 0 0 7785 7831 608835316 608835362 3.990000e-13 87.9
3 TraesCS4A01G320000 chr4A 100.000 47 0 0 7674 7720 608835427 608835473 3.990000e-13 87.9
4 TraesCS4A01G320000 chr5D 96.379 4170 87 27 10 4126 563762369 563758211 0.000000e+00 6806.0
5 TraesCS4A01G320000 chr5D 94.146 1230 26 14 5116 6317 563756819 563755608 0.000000e+00 1831.0
6 TraesCS4A01G320000 chr5D 97.382 764 17 2 4258 5020 563757675 563756914 0.000000e+00 1297.0
7 TraesCS4A01G320000 chr5D 90.812 751 21 17 7031 7776 563754698 563753991 0.000000e+00 961.0
8 TraesCS4A01G320000 chr5D 91.071 728 31 12 6308 7032 563755426 563754730 0.000000e+00 953.0
9 TraesCS4A01G320000 chr5D 97.015 134 4 0 4126 4259 563758097 563757964 8.110000e-55 226.0
10 TraesCS4A01G320000 chr5B 91.860 4361 187 66 10 4259 706172411 706168108 0.000000e+00 5932.0
11 TraesCS4A01G320000 chr5B 91.140 2641 126 37 4439 7032 706167710 706165131 0.000000e+00 3482.0
12 TraesCS4A01G320000 chr5B 89.614 751 26 21 7034 7772 706165096 706164386 0.000000e+00 907.0
13 TraesCS4A01G320000 chr5B 92.414 145 7 1 4300 4440 706167936 706167792 3.800000e-48 204.0
14 TraesCS4A01G320000 chr5B 96.429 56 2 0 3326 3381 671505896 671505951 8.580000e-15 93.5
15 TraesCS4A01G320000 chr5B 86.747 83 6 5 7781 7863 706164487 706164410 3.990000e-13 87.9
16 TraesCS4A01G320000 chr5B 100.000 44 0 0 4258 4301 706168024 706167981 1.860000e-11 82.4
17 TraesCS4A01G320000 chr7D 91.589 107 8 1 5020 5125 57073233 57073339 6.500000e-31 147.0
18 TraesCS4A01G320000 chr7D 85.294 136 14 6 5020 5151 552952835 552952968 1.410000e-27 135.0
19 TraesCS4A01G320000 chr3B 92.157 102 7 1 5020 5120 545185461 545185562 8.400000e-30 143.0
20 TraesCS4A01G320000 chr2D 90.000 110 10 1 5020 5128 56246538 56246429 3.020000e-29 141.0
21 TraesCS4A01G320000 chr2D 92.708 96 6 1 5023 5117 539879545 539879450 3.910000e-28 137.0
22 TraesCS4A01G320000 chr4D 91.919 99 7 1 5020 5117 503357934 503358032 3.910000e-28 137.0
23 TraesCS4A01G320000 chr1B 90.385 104 9 1 5022 5124 611680519 611680416 1.410000e-27 135.0
24 TraesCS4A01G320000 chr1B 88.393 112 9 3 5020 5127 22802393 22802504 1.820000e-26 132.0
25 TraesCS4A01G320000 chr6D 91.000 100 8 1 5020 5118 178852220 178852319 5.060000e-27 134.0
26 TraesCS4A01G320000 chr4B 98.214 56 1 0 3326 3381 193676421 193676476 1.840000e-16 99.0
27 TraesCS4A01G320000 chr4B 96.429 56 2 0 3326 3381 659159239 659159184 8.580000e-15 93.5
28 TraesCS4A01G320000 chr1D 96.429 56 2 0 3326 3381 277359782 277359727 8.580000e-15 93.5
29 TraesCS4A01G320000 chr1D 96.429 56 2 0 3326 3381 438324175 438324120 8.580000e-15 93.5
30 TraesCS4A01G320000 chr1A 96.429 56 2 0 3326 3381 350014364 350014309 8.580000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G320000 chr4A 608827643 608835674 8031 False 5002.933333 14833 100.0000 1 8032 3 chr4A.!!$F2 8031
1 TraesCS4A01G320000 chr5D 563753991 563762369 8378 True 2012.333333 6806 94.4675 10 7776 6 chr5D.!!$R1 7766
2 TraesCS4A01G320000 chr5B 706164386 706172411 8025 True 1782.550000 5932 91.9625 10 7863 6 chr5B.!!$R1 7853

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
376 378 0.031010 ACCTAATCCTTCTCGGGCCT 60.031 55.0 0.84 0.00 0.00 5.19 F
377 379 0.682292 CCTAATCCTTCTCGGGCCTC 59.318 60.0 0.84 0.00 0.00 4.70 F
438 442 0.951040 CCGCGAAGGCAAGAAGAGTT 60.951 55.0 8.23 0.00 39.92 3.01 F
487 491 1.493854 TTAGGCAGGCGGGGAAGAAA 61.494 55.0 0.00 0.00 0.00 2.52 F
1668 1756 1.639298 CCTTAGCGCTTGTCTGTGGC 61.639 60.0 18.68 0.00 0.00 5.01 F
2972 3083 0.815213 TCTGAATGCGCATACAGGCC 60.815 55.0 25.61 9.29 0.00 5.19 F
3367 3487 0.987294 AAGTGGGAGCTACATGCACT 59.013 50.0 0.00 0.00 45.94 4.40 F
4935 5602 0.178950 TTGCCACCCACCATTTAGCA 60.179 50.0 0.00 0.00 0.00 3.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1540 1628 0.374758 CAACGGTCGAATCCATGCAG 59.625 55.000 0.00 0.0 0.00 4.41 R
1673 1761 0.666274 CTTCTGTTGTCGTGGCGCTA 60.666 55.000 7.64 0.0 0.00 4.26 R
2080 2179 0.807667 ATCGTGCTGGACAATCGCTC 60.808 55.000 0.00 0.0 0.00 5.03 R
2972 3083 5.207110 CCAGAATCTGGTAGTAGGTCATG 57.793 47.826 20.76 0.0 45.82 3.07 R
3345 3465 0.677731 GCATGTAGCTCCCACTTGCA 60.678 55.000 16.84 0.0 43.10 4.08 R
4904 5571 1.524008 GGTGGCAAAAGGGGTTCTCG 61.524 60.000 0.00 0.0 0.00 4.04 R
5020 5688 2.450476 ACATCCATTTGAGGGACAAGC 58.550 47.619 0.00 0.0 39.77 4.01 R
7383 8332 0.182299 CCCCTCTCCTCTTTCATGCC 59.818 60.000 0.00 0.0 0.00 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
65 66 9.379811 GCTCTATAGTAACGTAACTATTGTGTC 57.620 37.037 0.00 0.00 41.71 3.67
72 73 4.901868 ACGTAACTATTGTGTCACCCAAT 58.098 39.130 0.00 0.00 36.53 3.16
88 89 4.937620 CACCCAATCATATATTCCTCCACG 59.062 45.833 0.00 0.00 0.00 4.94
102 103 2.663196 CACGTCACTCCTTCCCCC 59.337 66.667 0.00 0.00 0.00 5.40
104 105 1.152096 ACGTCACTCCTTCCCCCTT 60.152 57.895 0.00 0.00 0.00 3.95
136 137 4.531854 TCCCATCGCCAATATTTTTCTCA 58.468 39.130 0.00 0.00 0.00 3.27
137 138 4.338118 TCCCATCGCCAATATTTTTCTCAC 59.662 41.667 0.00 0.00 0.00 3.51
143 144 4.044426 GCCAATATTTTTCTCACGGATGC 58.956 43.478 0.00 0.00 0.00 3.91
168 169 3.799137 TTTGTCCGTTCGTGCTTAATC 57.201 42.857 0.00 0.00 0.00 1.75
212 213 5.100259 CGCGATATCCAAAACCGATACTAT 58.900 41.667 0.00 0.00 0.00 2.12
226 227 4.562082 CGATACTATCGCATTAAACCCCA 58.438 43.478 5.53 0.00 46.55 4.96
287 289 2.279650 GGCCGCGTCGCCTATAAA 60.280 61.111 17.81 0.00 46.10 1.40
292 294 1.283736 CGCGTCGCCTATAAAAACCT 58.716 50.000 12.44 0.00 0.00 3.50
329 331 2.291190 CGCTCCGGAAAACTAAAAACCA 59.709 45.455 5.23 0.00 0.00 3.67
365 367 6.780522 AGATCTAGAGTTTCCTCACCTAATCC 59.219 42.308 0.00 0.00 40.40 3.01
369 371 5.346270 AGAGTTTCCTCACCTAATCCTTCT 58.654 41.667 0.00 0.00 40.40 2.85
373 375 1.689273 CCTCACCTAATCCTTCTCGGG 59.311 57.143 0.00 0.00 0.00 5.14
374 376 1.069358 CTCACCTAATCCTTCTCGGGC 59.931 57.143 0.00 0.00 0.00 6.13
376 378 0.031010 ACCTAATCCTTCTCGGGCCT 60.031 55.000 0.84 0.00 0.00 5.19
377 379 0.682292 CCTAATCCTTCTCGGGCCTC 59.318 60.000 0.84 0.00 0.00 4.70
438 442 0.951040 CCGCGAAGGCAAGAAGAGTT 60.951 55.000 8.23 0.00 39.92 3.01
487 491 1.493854 TTAGGCAGGCGGGGAAGAAA 61.494 55.000 0.00 0.00 0.00 2.52
563 567 1.880340 CGCAGAAGATCCTCGTGCC 60.880 63.158 9.00 0.00 0.00 5.01
726 740 4.936823 CCGCCCCCGATTCGTACG 62.937 72.222 9.53 9.53 36.29 3.67
825 843 4.825679 GTGGGGAGGGGAGGGGAG 62.826 77.778 0.00 0.00 0.00 4.30
1184 1223 4.756203 ATCTCTCCACTCCATCTCCATA 57.244 45.455 0.00 0.00 0.00 2.74
1358 1407 2.620112 CCAGGGACGCTGCAGTTTG 61.620 63.158 16.64 8.36 0.00 2.93
1540 1628 5.621193 ACTATGGTTTATATCTGGGTGCAC 58.379 41.667 8.80 8.80 0.00 4.57
1668 1756 1.639298 CCTTAGCGCTTGTCTGTGGC 61.639 60.000 18.68 0.00 0.00 5.01
1673 1761 4.643387 GCTTGTCTGTGGCGGGGT 62.643 66.667 0.00 0.00 0.00 4.95
2080 2179 6.012658 TCTGCTTTATAAGGTTGCTGTTTG 57.987 37.500 0.00 0.00 0.00 2.93
2874 2985 3.069443 TCGTTACCTTAGGGTTCGTTGTT 59.931 43.478 0.07 0.00 44.73 2.83
2972 3083 0.815213 TCTGAATGCGCATACAGGCC 60.815 55.000 25.61 9.29 0.00 5.19
3351 3471 3.953775 CCCGGACCCTGTGCAAGT 61.954 66.667 0.73 0.00 0.00 3.16
3367 3487 0.987294 AAGTGGGAGCTACATGCACT 59.013 50.000 0.00 0.00 45.94 4.40
3481 3601 4.223923 AGAATTGGGAGAATCGAGACAGTT 59.776 41.667 0.00 0.00 34.37 3.16
3713 3836 4.558226 TTGCTGTGTGGATCATTCTAGT 57.442 40.909 0.00 0.00 0.00 2.57
3715 3838 3.771479 TGCTGTGTGGATCATTCTAGTCT 59.229 43.478 0.00 0.00 0.00 3.24
4161 4405 3.064820 GGTGGTGCCATACTGTTTATTCG 59.935 47.826 0.00 0.00 37.17 3.34
4196 4440 8.726988 TCCACTATGACAGTTTAATAACTTTGC 58.273 33.333 0.00 0.00 41.85 3.68
4220 4464 4.876701 AGGCACTTGCTTCGAACA 57.123 50.000 0.00 0.00 41.70 3.18
4409 4993 2.898612 TGTGTGCCAATGAACATCCATT 59.101 40.909 0.00 0.00 37.24 3.16
4736 5403 5.176592 GGGTTCAGTCTTATTGGTACTGAC 58.823 45.833 4.00 1.22 46.85 3.51
4747 5414 4.594123 TTGGTACTGACGTTTCATCTCA 57.406 40.909 0.00 0.00 0.00 3.27
4778 5445 5.048713 GGTTTGACAGACTTATTGGAACTGG 60.049 44.000 0.00 0.00 33.57 4.00
4904 5571 3.944055 TGGAAGTAGTCACTGAGAAGC 57.056 47.619 0.00 0.00 34.36 3.86
4935 5602 0.178950 TTGCCACCCACCATTTAGCA 60.179 50.000 0.00 0.00 0.00 3.49
5020 5688 5.227908 TCGAGTAAGTGTTTTAAGGCAGAG 58.772 41.667 0.00 0.00 0.00 3.35
5021 5689 4.143094 CGAGTAAGTGTTTTAAGGCAGAGC 60.143 45.833 0.00 0.00 0.00 4.09
5023 5691 5.377478 AGTAAGTGTTTTAAGGCAGAGCTT 58.623 37.500 0.00 0.00 0.00 3.74
5024 5692 4.574599 AAGTGTTTTAAGGCAGAGCTTG 57.425 40.909 0.00 0.00 0.00 4.01
5025 5693 3.555966 AGTGTTTTAAGGCAGAGCTTGT 58.444 40.909 0.00 0.00 0.00 3.16
5026 5694 3.565902 AGTGTTTTAAGGCAGAGCTTGTC 59.434 43.478 0.00 0.00 0.00 3.18
5028 5696 2.200373 TTTAAGGCAGAGCTTGTCCC 57.800 50.000 0.00 0.00 29.16 4.46
5029 5697 1.362224 TTAAGGCAGAGCTTGTCCCT 58.638 50.000 0.00 0.00 29.16 4.20
5031 5699 1.130054 AAGGCAGAGCTTGTCCCTCA 61.130 55.000 0.00 0.00 29.16 3.86
5032 5700 1.130054 AGGCAGAGCTTGTCCCTCAA 61.130 55.000 0.00 0.00 29.16 3.02
5033 5701 0.250901 GGCAGAGCTTGTCCCTCAAA 60.251 55.000 0.00 0.00 35.48 2.69
5035 5703 1.471684 GCAGAGCTTGTCCCTCAAATG 59.528 52.381 0.00 0.00 35.48 2.32
5036 5704 2.089980 CAGAGCTTGTCCCTCAAATGG 58.910 52.381 0.00 0.00 35.48 3.16
5037 5705 1.988107 AGAGCTTGTCCCTCAAATGGA 59.012 47.619 0.00 0.00 35.48 3.41
5038 5706 2.579860 AGAGCTTGTCCCTCAAATGGAT 59.420 45.455 0.00 0.00 35.48 3.41
5039 5707 2.686915 GAGCTTGTCCCTCAAATGGATG 59.313 50.000 0.00 0.00 35.48 3.51
5041 5709 3.266772 AGCTTGTCCCTCAAATGGATGTA 59.733 43.478 0.00 0.00 35.48 2.29
5042 5710 4.079558 AGCTTGTCCCTCAAATGGATGTAT 60.080 41.667 0.00 0.00 35.48 2.29
5043 5711 4.276926 GCTTGTCCCTCAAATGGATGTATC 59.723 45.833 0.00 0.00 35.48 2.24
5045 5713 6.688922 GCTTGTCCCTCAAATGGATGTATCTA 60.689 42.308 0.00 0.00 35.48 1.98
5046 5714 6.425210 TGTCCCTCAAATGGATGTATCTAG 57.575 41.667 0.00 0.00 33.65 2.43
5047 5715 5.221722 TGTCCCTCAAATGGATGTATCTAGC 60.222 44.000 0.00 0.00 33.65 3.42
5048 5716 4.907269 TCCCTCAAATGGATGTATCTAGCA 59.093 41.667 0.00 0.00 0.00 3.49
5049 5717 4.999950 CCCTCAAATGGATGTATCTAGCAC 59.000 45.833 0.00 0.00 0.00 4.40
5050 5718 4.999950 CCTCAAATGGATGTATCTAGCACC 59.000 45.833 0.00 0.00 0.00 5.01
5051 5719 5.455183 CCTCAAATGGATGTATCTAGCACCA 60.455 44.000 0.00 0.00 0.00 4.17
5055 5723 7.560991 TCAAATGGATGTATCTAGCACCAAATT 59.439 33.333 0.00 0.00 0.00 1.82
5057 5725 8.627208 AATGGATGTATCTAGCACCAAATTAG 57.373 34.615 0.00 0.00 0.00 1.73
5060 5728 7.715249 TGGATGTATCTAGCACCAAATTAGTTC 59.285 37.037 0.00 0.00 0.00 3.01
5061 5729 7.934120 GGATGTATCTAGCACCAAATTAGTTCT 59.066 37.037 0.00 0.00 0.00 3.01
5063 5731 9.988815 ATGTATCTAGCACCAAATTAGTTCTAG 57.011 33.333 8.17 8.17 33.85 2.43
5064 5732 9.197306 TGTATCTAGCACCAAATTAGTTCTAGA 57.803 33.333 15.40 15.40 41.92 2.43
5071 5739 9.331282 AGCACCAAATTAGTTCTAGATACATTC 57.669 33.333 0.00 0.00 0.00 2.67
5072 5740 9.109393 GCACCAAATTAGTTCTAGATACATTCA 57.891 33.333 0.00 0.00 0.00 2.57
5089 5757 9.178427 GATACATTCATTTGAAGATAAGCTTGC 57.822 33.333 9.86 0.63 36.83 4.01
5091 5759 5.878332 TTCATTTGAAGATAAGCTTGCGA 57.122 34.783 9.86 0.00 36.83 5.10
5092 5760 5.221891 TCATTTGAAGATAAGCTTGCGAC 57.778 39.130 9.86 0.00 36.83 5.19
5093 5761 4.694982 TCATTTGAAGATAAGCTTGCGACA 59.305 37.500 9.86 4.54 36.83 4.35
5094 5762 5.181056 TCATTTGAAGATAAGCTTGCGACAA 59.819 36.000 9.86 9.78 36.83 3.18
5095 5763 4.668576 TTGAAGATAAGCTTGCGACAAG 57.331 40.909 9.86 13.18 36.83 3.16
5096 5764 3.664107 TGAAGATAAGCTTGCGACAAGT 58.336 40.909 9.86 5.22 36.83 3.16
5099 5767 5.008613 TGAAGATAAGCTTGCGACAAGTTTT 59.991 36.000 20.10 15.79 36.83 2.43
5219 5891 5.528337 AGGGGTATTGCCATGAAAATACTT 58.472 37.500 20.56 10.65 38.66 2.24
5369 6041 8.375506 TGAGTGGGACTTTAATATGCTATAAGG 58.624 37.037 0.00 0.00 0.00 2.69
5373 6045 7.237679 TGGGACTTTAATATGCTATAAGGAGCT 59.762 37.037 0.00 0.00 43.27 4.09
5647 6320 2.818921 ACCTATGCTTGGGAAATGCAA 58.181 42.857 9.11 0.00 41.78 4.08
5742 6416 6.592994 ACAATCAGCTGATATTCCATATGACG 59.407 38.462 28.92 3.47 33.73 4.35
5757 6431 5.516696 CCATATGACGTGAAACTACTGTCTG 59.483 44.000 3.65 0.00 31.75 3.51
5835 6509 8.006564 AGTTCAATACCCATTGTGGATGATAAT 58.993 33.333 0.00 0.00 40.96 1.28
6005 6704 9.391006 GACTTATGTATTGTGTTTCCTCCATTA 57.609 33.333 0.00 0.00 0.00 1.90
6170 6872 7.789273 TGAGTTTATTTGTCCAACGACTTTA 57.211 32.000 0.00 0.00 39.94 1.85
6175 6877 4.806342 TTTGTCCAACGACTTTAGCTTC 57.194 40.909 0.00 0.00 39.94 3.86
6252 6957 5.086104 TGTAGGCATAGTGAAGTTCTTCC 57.914 43.478 4.17 2.55 0.00 3.46
6339 7234 6.001449 ACTACCAAACTGTGCATACCATAT 57.999 37.500 0.00 0.00 0.00 1.78
6403 7298 5.649395 TCTGGAATTCATTAGTGAAGCAAGG 59.351 40.000 7.93 0.00 46.75 3.61
6408 7303 2.305635 TCATTAGTGAAGCAAGGCCTCA 59.694 45.455 5.23 0.00 0.00 3.86
6461 7356 1.836604 TGCCCCTTTGTTTGGAGCC 60.837 57.895 0.00 0.00 0.00 4.70
6502 7400 9.981114 CTTTGTCCAAGTACATATTTTCCTTTT 57.019 29.630 0.00 0.00 0.00 2.27
6537 7435 3.434167 GGTCAGTTGATGCCACATATCCT 60.434 47.826 0.00 0.00 0.00 3.24
6571 7469 6.514947 TGTGAAATTTAAAACTGCAGCTGAT 58.485 32.000 20.43 0.00 0.00 2.90
6727 7626 8.113969 GCAGTATGAACACTTTCTTGTGTGGT 62.114 42.308 0.90 0.00 44.08 4.16
6739 7638 1.827789 GTGTGGTCAGGCCTTGCAA 60.828 57.895 0.00 0.00 38.35 4.08
6802 7701 3.755378 GTCAAAGATGCCAGATGTGTCTT 59.245 43.478 0.00 0.00 30.42 3.01
6901 7800 7.376072 GCACGAGTATTAATAATTGTTTGCTCC 59.624 37.037 12.13 0.00 0.00 4.70
6934 7835 2.350522 GATTCTCGTGTGCCTGTCATT 58.649 47.619 0.00 0.00 0.00 2.57
7110 8044 0.473755 TCTGGCTTGCTCTTGGACAA 59.526 50.000 0.00 0.00 0.00 3.18
7111 8045 0.879765 CTGGCTTGCTCTTGGACAAG 59.120 55.000 5.72 5.72 44.88 3.16
7164 8102 3.622514 TGGTTGTGCCAACCCAAC 58.377 55.556 25.19 11.37 45.94 3.77
7166 8104 2.818841 GTTGTGCCAACCCAACCC 59.181 61.111 6.76 0.00 35.93 4.11
7167 8105 2.060980 GTTGTGCCAACCCAACCCA 61.061 57.895 6.76 0.00 35.93 4.51
7168 8106 1.306141 TTGTGCCAACCCAACCCAA 60.306 52.632 0.00 0.00 0.00 4.12
7169 8107 1.617947 TTGTGCCAACCCAACCCAAC 61.618 55.000 0.00 0.00 0.00 3.77
7170 8108 2.444895 TGCCAACCCAACCCAACC 60.445 61.111 0.00 0.00 0.00 3.77
7171 8109 3.238497 GCCAACCCAACCCAACCC 61.238 66.667 0.00 0.00 0.00 4.11
7172 8110 2.283809 CCAACCCAACCCAACCCA 59.716 61.111 0.00 0.00 0.00 4.51
7173 8111 1.383248 CCAACCCAACCCAACCCAA 60.383 57.895 0.00 0.00 0.00 4.12
7174 8112 1.691195 CCAACCCAACCCAACCCAAC 61.691 60.000 0.00 0.00 0.00 3.77
7175 8113 1.383386 AACCCAACCCAACCCAACC 60.383 57.895 0.00 0.00 0.00 3.77
7176 8114 2.525629 CCCAACCCAACCCAACCC 60.526 66.667 0.00 0.00 0.00 4.11
7177 8115 2.283809 CCAACCCAACCCAACCCA 59.716 61.111 0.00 0.00 0.00 4.51
7178 8116 1.383248 CCAACCCAACCCAACCCAA 60.383 57.895 0.00 0.00 0.00 4.12
7198 8141 1.972223 CCTCACCGTCCGTCTGTCT 60.972 63.158 0.00 0.00 0.00 3.41
7219 8162 4.456911 TCTGTCTGTCGTAACCGAAACTAT 59.543 41.667 0.00 0.00 46.26 2.12
7297 8240 1.203237 AGTCTCCAAGGAGCCAGAGAA 60.203 52.381 11.31 0.00 41.71 2.87
7331 8278 4.210093 TGCGTTGGTCGGTGTCGT 62.210 61.111 0.00 0.00 40.26 4.34
7332 8279 2.963320 GCGTTGGTCGGTGTCGTT 60.963 61.111 0.00 0.00 40.26 3.85
7333 8280 2.925352 CGTTGGTCGGTGTCGTTG 59.075 61.111 0.00 0.00 37.69 4.10
7365 8312 5.194432 TGTGCCTAGTTTACTAGAGAGAGG 58.806 45.833 16.57 4.49 46.80 3.69
7371 8320 2.950975 GTTTACTAGAGAGAGGGACCCG 59.049 54.545 4.40 0.00 0.00 5.28
7374 8323 1.064537 ACTAGAGAGAGGGACCCGTTC 60.065 57.143 4.40 7.05 0.00 3.95
7376 8325 1.000612 GAGAGAGGGACCCGTTCCT 59.999 63.158 4.40 0.00 45.09 3.36
7378 8327 0.905337 AGAGAGGGACCCGTTCCTTG 60.905 60.000 4.40 0.00 45.09 3.61
7383 8332 1.232621 GGGACCCGTTCCTTGTTTCG 61.233 60.000 0.00 0.00 45.09 3.46
7412 8361 2.252408 AGAGGAGAGGGGGAAGATGATT 59.748 50.000 0.00 0.00 0.00 2.57
7431 8380 2.465860 TATGGTCCGGTTCAAGTGTG 57.534 50.000 0.00 0.00 0.00 3.82
7483 8432 2.953466 CATGCAACCATGGAAGAAGG 57.047 50.000 21.47 2.23 44.07 3.46
7594 8543 4.832266 ACCTCATTTTATGTTGAACTGCCA 59.168 37.500 0.00 0.00 0.00 4.92
7597 8546 6.532657 CCTCATTTTATGTTGAACTGCCATTC 59.467 38.462 0.00 0.00 0.00 2.67
7614 8563 4.562143 GCCATTCTGGACTCATTTTGCTTT 60.562 41.667 0.00 0.00 40.96 3.51
7615 8564 5.166398 CCATTCTGGACTCATTTTGCTTTC 58.834 41.667 0.00 0.00 40.96 2.62
7721 8677 4.437587 CCTTCCCTGGCTGGCCTG 62.438 72.222 13.05 4.26 36.94 4.85
7727 8683 2.192443 CTGGCTGGCCTGATGGAG 59.808 66.667 14.77 0.00 37.23 3.86
7729 8685 2.326773 CTGGCTGGCCTGATGGAGAG 62.327 65.000 14.77 0.00 37.23 3.20
7737 8693 1.270732 GCCTGATGGAGAGCATACCAG 60.271 57.143 0.00 0.00 39.62 4.00
7772 8728 5.668471 CTGAATAAGATGCTGTCTTCTCCA 58.332 41.667 7.98 5.00 43.74 3.86
7776 8732 2.641305 AGATGCTGTCTTCTCCATTGC 58.359 47.619 0.00 0.00 31.47 3.56
7777 8733 1.329906 GATGCTGTCTTCTCCATTGCG 59.670 52.381 0.00 0.00 0.00 4.85
7778 8734 0.321346 TGCTGTCTTCTCCATTGCGA 59.679 50.000 0.00 0.00 0.00 5.10
7779 8735 1.270785 TGCTGTCTTCTCCATTGCGAA 60.271 47.619 0.00 0.00 0.00 4.70
7780 8736 1.806542 GCTGTCTTCTCCATTGCGAAA 59.193 47.619 0.00 0.00 0.00 3.46
7781 8737 2.421424 GCTGTCTTCTCCATTGCGAAAT 59.579 45.455 0.00 0.00 0.00 2.17
7782 8738 3.486542 GCTGTCTTCTCCATTGCGAAATC 60.487 47.826 0.00 0.00 0.00 2.17
7783 8739 2.672874 TGTCTTCTCCATTGCGAAATCG 59.327 45.455 0.00 0.00 43.27 3.34
7784 8740 2.673368 GTCTTCTCCATTGCGAAATCGT 59.327 45.455 4.59 0.00 42.22 3.73
7785 8741 3.863424 GTCTTCTCCATTGCGAAATCGTA 59.137 43.478 4.59 0.00 42.22 3.43
7786 8742 4.508124 GTCTTCTCCATTGCGAAATCGTAT 59.492 41.667 4.59 0.00 42.22 3.06
7787 8743 4.745125 TCTTCTCCATTGCGAAATCGTATC 59.255 41.667 4.59 0.00 42.22 2.24
7788 8744 3.390135 TCTCCATTGCGAAATCGTATCC 58.610 45.455 4.59 0.00 42.22 2.59
7789 8745 3.130633 CTCCATTGCGAAATCGTATCCA 58.869 45.455 4.59 0.00 42.22 3.41
7790 8746 3.738982 TCCATTGCGAAATCGTATCCAT 58.261 40.909 4.59 0.00 42.22 3.41
7791 8747 3.745975 TCCATTGCGAAATCGTATCCATC 59.254 43.478 4.59 0.00 42.22 3.51
7792 8748 3.120199 CCATTGCGAAATCGTATCCATCC 60.120 47.826 4.59 0.00 42.22 3.51
7793 8749 2.900716 TGCGAAATCGTATCCATCCA 57.099 45.000 4.59 0.00 42.22 3.41
7794 8750 3.401033 TGCGAAATCGTATCCATCCAT 57.599 42.857 4.59 0.00 42.22 3.41
7795 8751 3.325870 TGCGAAATCGTATCCATCCATC 58.674 45.455 4.59 0.00 42.22 3.51
7796 8752 2.673368 GCGAAATCGTATCCATCCATCC 59.327 50.000 4.59 0.00 42.22 3.51
7797 8753 3.864540 GCGAAATCGTATCCATCCATCCA 60.865 47.826 4.59 0.00 42.22 3.41
7798 8754 4.507710 CGAAATCGTATCCATCCATCCAT 58.492 43.478 0.00 0.00 34.11 3.41
7799 8755 4.568359 CGAAATCGTATCCATCCATCCATC 59.432 45.833 0.00 0.00 34.11 3.51
7800 8756 4.494091 AATCGTATCCATCCATCCATCC 57.506 45.455 0.00 0.00 0.00 3.51
7801 8757 3.190383 TCGTATCCATCCATCCATCCT 57.810 47.619 0.00 0.00 0.00 3.24
7802 8758 3.099905 TCGTATCCATCCATCCATCCTC 58.900 50.000 0.00 0.00 0.00 3.71
7803 8759 3.102972 CGTATCCATCCATCCATCCTCT 58.897 50.000 0.00 0.00 0.00 3.69
7804 8760 3.517100 CGTATCCATCCATCCATCCTCTT 59.483 47.826 0.00 0.00 0.00 2.85
7805 8761 4.622457 CGTATCCATCCATCCATCCTCTTG 60.622 50.000 0.00 0.00 0.00 3.02
7806 8762 3.064773 TCCATCCATCCATCCTCTTGA 57.935 47.619 0.00 0.00 0.00 3.02
7807 8763 2.977580 TCCATCCATCCATCCTCTTGAG 59.022 50.000 0.00 0.00 0.00 3.02
7808 8764 2.709934 CCATCCATCCATCCTCTTGAGT 59.290 50.000 0.00 0.00 0.00 3.41
7809 8765 3.137913 CCATCCATCCATCCTCTTGAGTT 59.862 47.826 0.00 0.00 0.00 3.01
7810 8766 4.349048 CCATCCATCCATCCTCTTGAGTTA 59.651 45.833 0.00 0.00 0.00 2.24
7811 8767 5.013913 CCATCCATCCATCCTCTTGAGTTAT 59.986 44.000 0.00 0.00 0.00 1.89
7812 8768 5.815233 TCCATCCATCCTCTTGAGTTATC 57.185 43.478 0.00 0.00 0.00 1.75
7813 8769 5.471424 TCCATCCATCCTCTTGAGTTATCT 58.529 41.667 0.00 0.00 0.00 1.98
7814 8770 5.306419 TCCATCCATCCTCTTGAGTTATCTG 59.694 44.000 0.00 0.00 0.00 2.90
7815 8771 4.679373 TCCATCCTCTTGAGTTATCTGC 57.321 45.455 0.00 0.00 0.00 4.26
7816 8772 3.389329 TCCATCCTCTTGAGTTATCTGCC 59.611 47.826 0.00 0.00 0.00 4.85
7817 8773 3.390639 CCATCCTCTTGAGTTATCTGCCT 59.609 47.826 0.00 0.00 0.00 4.75
7818 8774 4.141528 CCATCCTCTTGAGTTATCTGCCTT 60.142 45.833 0.00 0.00 0.00 4.35
7819 8775 4.744795 TCCTCTTGAGTTATCTGCCTTC 57.255 45.455 0.00 0.00 0.00 3.46
7820 8776 3.452627 TCCTCTTGAGTTATCTGCCTTCC 59.547 47.826 0.00 0.00 0.00 3.46
7821 8777 3.432890 CCTCTTGAGTTATCTGCCTTCCC 60.433 52.174 0.00 0.00 0.00 3.97
7822 8778 3.454082 CTCTTGAGTTATCTGCCTTCCCT 59.546 47.826 0.00 0.00 0.00 4.20
7823 8779 3.198635 TCTTGAGTTATCTGCCTTCCCTG 59.801 47.826 0.00 0.00 0.00 4.45
7824 8780 1.839994 TGAGTTATCTGCCTTCCCTGG 59.160 52.381 0.00 0.00 0.00 4.45
7850 8806 3.089573 CCGACGGGAAGAAACTATACC 57.910 52.381 5.81 0.00 34.06 2.73
7851 8807 2.428171 CCGACGGGAAGAAACTATACCA 59.572 50.000 5.81 0.00 34.06 3.25
7852 8808 3.119029 CCGACGGGAAGAAACTATACCAA 60.119 47.826 5.81 0.00 34.06 3.67
7853 8809 4.497300 CGACGGGAAGAAACTATACCAAA 58.503 43.478 0.00 0.00 0.00 3.28
7854 8810 4.931002 CGACGGGAAGAAACTATACCAAAA 59.069 41.667 0.00 0.00 0.00 2.44
7855 8811 5.163923 CGACGGGAAGAAACTATACCAAAAC 60.164 44.000 0.00 0.00 0.00 2.43
7856 8812 5.872963 ACGGGAAGAAACTATACCAAAACT 58.127 37.500 0.00 0.00 0.00 2.66
7857 8813 5.936372 ACGGGAAGAAACTATACCAAAACTC 59.064 40.000 0.00 0.00 0.00 3.01
7858 8814 5.935789 CGGGAAGAAACTATACCAAAACTCA 59.064 40.000 0.00 0.00 0.00 3.41
7859 8815 6.092259 CGGGAAGAAACTATACCAAAACTCAG 59.908 42.308 0.00 0.00 0.00 3.35
7860 8816 6.940867 GGGAAGAAACTATACCAAAACTCAGT 59.059 38.462 0.00 0.00 0.00 3.41
7861 8817 7.447545 GGGAAGAAACTATACCAAAACTCAGTT 59.552 37.037 0.00 0.00 0.00 3.16
7862 8818 8.847196 GGAAGAAACTATACCAAAACTCAGTTT 58.153 33.333 0.00 0.00 38.54 2.66
7865 8821 9.281371 AGAAACTATACCAAAACTCAGTTTACC 57.719 33.333 2.38 0.00 36.60 2.85
7866 8822 7.662604 AACTATACCAAAACTCAGTTTACCG 57.337 36.000 2.38 0.00 34.43 4.02
7867 8823 6.996509 ACTATACCAAAACTCAGTTTACCGA 58.003 36.000 2.38 0.00 34.43 4.69
7868 8824 7.095270 ACTATACCAAAACTCAGTTTACCGAG 58.905 38.462 2.38 0.00 34.43 4.63
7869 8825 4.146745 ACCAAAACTCAGTTTACCGAGT 57.853 40.909 2.38 0.00 44.30 4.18
7870 8826 4.124970 ACCAAAACTCAGTTTACCGAGTC 58.875 43.478 2.38 0.00 41.60 3.36
7871 8827 4.141779 ACCAAAACTCAGTTTACCGAGTCT 60.142 41.667 2.38 0.00 41.60 3.24
7872 8828 4.814771 CCAAAACTCAGTTTACCGAGTCTT 59.185 41.667 2.38 0.00 41.60 3.01
7873 8829 5.296035 CCAAAACTCAGTTTACCGAGTCTTT 59.704 40.000 2.38 1.71 41.60 2.52
7874 8830 6.183360 CCAAAACTCAGTTTACCGAGTCTTTT 60.183 38.462 2.38 0.00 41.60 2.27
7875 8831 6.997239 AAACTCAGTTTACCGAGTCTTTTT 57.003 33.333 0.00 0.00 41.60 1.94
7901 8857 7.518731 TTTCCTTTTTCTGTTGTGAAAATCG 57.481 32.000 3.73 0.13 42.94 3.34
7902 8858 6.443934 TCCTTTTTCTGTTGTGAAAATCGA 57.556 33.333 3.73 0.00 42.94 3.59
7903 8859 6.262601 TCCTTTTTCTGTTGTGAAAATCGAC 58.737 36.000 0.00 0.00 42.94 4.20
7904 8860 6.094881 TCCTTTTTCTGTTGTGAAAATCGACT 59.905 34.615 0.00 0.00 42.94 4.18
7905 8861 6.197096 CCTTTTTCTGTTGTGAAAATCGACTG 59.803 38.462 0.00 0.00 42.94 3.51
7906 8862 5.811399 TTTCTGTTGTGAAAATCGACTGT 57.189 34.783 0.00 0.00 33.59 3.55
7907 8863 5.403897 TTCTGTTGTGAAAATCGACTGTC 57.596 39.130 0.00 0.00 0.00 3.51
7908 8864 4.693283 TCTGTTGTGAAAATCGACTGTCT 58.307 39.130 6.21 0.00 0.00 3.41
7909 8865 4.507756 TCTGTTGTGAAAATCGACTGTCTG 59.492 41.667 6.21 0.01 0.00 3.51
7910 8866 3.002246 TGTTGTGAAAATCGACTGTCTGC 59.998 43.478 6.21 0.00 0.00 4.26
7911 8867 3.111853 TGTGAAAATCGACTGTCTGCT 57.888 42.857 6.21 0.00 0.00 4.24
7912 8868 4.251543 TGTGAAAATCGACTGTCTGCTA 57.748 40.909 6.21 0.00 0.00 3.49
7913 8869 4.820897 TGTGAAAATCGACTGTCTGCTAT 58.179 39.130 6.21 0.00 0.00 2.97
7914 8870 5.237815 TGTGAAAATCGACTGTCTGCTATT 58.762 37.500 6.21 0.00 0.00 1.73
7915 8871 5.700832 TGTGAAAATCGACTGTCTGCTATTT 59.299 36.000 6.21 4.33 0.00 1.40
7916 8872 6.017933 GTGAAAATCGACTGTCTGCTATTTG 58.982 40.000 6.21 0.00 0.00 2.32
7917 8873 5.700832 TGAAAATCGACTGTCTGCTATTTGT 59.299 36.000 6.21 0.11 0.00 2.83
7918 8874 6.204688 TGAAAATCGACTGTCTGCTATTTGTT 59.795 34.615 6.21 0.00 0.00 2.83
7919 8875 5.536554 AATCGACTGTCTGCTATTTGTTG 57.463 39.130 6.21 0.00 0.00 3.33
7920 8876 3.325870 TCGACTGTCTGCTATTTGTTGG 58.674 45.455 6.21 0.00 0.00 3.77
7921 8877 3.006430 TCGACTGTCTGCTATTTGTTGGA 59.994 43.478 6.21 0.00 0.00 3.53
7922 8878 3.369147 CGACTGTCTGCTATTTGTTGGAG 59.631 47.826 6.21 0.00 0.00 3.86
7923 8879 4.569943 GACTGTCTGCTATTTGTTGGAGA 58.430 43.478 0.00 0.00 0.00 3.71
7924 8880 4.573900 ACTGTCTGCTATTTGTTGGAGAG 58.426 43.478 0.00 0.00 31.56 3.20
7925 8881 4.284490 ACTGTCTGCTATTTGTTGGAGAGA 59.716 41.667 0.00 0.00 31.56 3.10
7926 8882 4.825422 TGTCTGCTATTTGTTGGAGAGAG 58.175 43.478 0.00 0.00 31.56 3.20
7927 8883 4.284490 TGTCTGCTATTTGTTGGAGAGAGT 59.716 41.667 0.00 0.00 31.56 3.24
7928 8884 5.221722 TGTCTGCTATTTGTTGGAGAGAGTT 60.222 40.000 0.00 0.00 31.56 3.01
7929 8885 5.703130 GTCTGCTATTTGTTGGAGAGAGTTT 59.297 40.000 0.00 0.00 31.56 2.66
7930 8886 6.874134 GTCTGCTATTTGTTGGAGAGAGTTTA 59.126 38.462 0.00 0.00 31.56 2.01
7931 8887 7.550906 GTCTGCTATTTGTTGGAGAGAGTTTAT 59.449 37.037 0.00 0.00 31.56 1.40
7932 8888 7.550551 TCTGCTATTTGTTGGAGAGAGTTTATG 59.449 37.037 0.00 0.00 0.00 1.90
7933 8889 6.599244 TGCTATTTGTTGGAGAGAGTTTATGG 59.401 38.462 0.00 0.00 0.00 2.74
7934 8890 6.038714 GCTATTTGTTGGAGAGAGTTTATGGG 59.961 42.308 0.00 0.00 0.00 4.00
7935 8891 3.350219 TGTTGGAGAGAGTTTATGGGC 57.650 47.619 0.00 0.00 0.00 5.36
7936 8892 2.642311 TGTTGGAGAGAGTTTATGGGCA 59.358 45.455 0.00 0.00 0.00 5.36
7937 8893 3.266772 TGTTGGAGAGAGTTTATGGGCAT 59.733 43.478 0.00 0.00 0.00 4.40
7938 8894 4.263905 TGTTGGAGAGAGTTTATGGGCATT 60.264 41.667 0.00 0.00 0.00 3.56
7939 8895 3.889815 TGGAGAGAGTTTATGGGCATTG 58.110 45.455 0.00 0.00 0.00 2.82
7940 8896 3.217626 GGAGAGAGTTTATGGGCATTGG 58.782 50.000 0.00 0.00 0.00 3.16
7941 8897 3.117888 GGAGAGAGTTTATGGGCATTGGA 60.118 47.826 0.00 0.00 0.00 3.53
7942 8898 4.526970 GAGAGAGTTTATGGGCATTGGAA 58.473 43.478 0.00 0.00 0.00 3.53
7943 8899 4.934356 AGAGAGTTTATGGGCATTGGAAA 58.066 39.130 0.00 0.00 0.00 3.13
7944 8900 5.332743 AGAGAGTTTATGGGCATTGGAAAA 58.667 37.500 0.00 0.00 0.00 2.29
7945 8901 5.960202 AGAGAGTTTATGGGCATTGGAAAAT 59.040 36.000 0.00 0.00 0.00 1.82
7946 8902 6.441604 AGAGAGTTTATGGGCATTGGAAAATT 59.558 34.615 0.00 0.00 0.00 1.82
7947 8903 7.019656 AGAGTTTATGGGCATTGGAAAATTT 57.980 32.000 0.00 0.00 0.00 1.82
7948 8904 7.460910 AGAGTTTATGGGCATTGGAAAATTTT 58.539 30.769 2.28 2.28 0.00 1.82
7949 8905 7.607607 AGAGTTTATGGGCATTGGAAAATTTTC 59.392 33.333 20.51 20.51 36.46 2.29
7950 8906 7.460910 AGTTTATGGGCATTGGAAAATTTTCT 58.539 30.769 25.86 7.93 37.35 2.52
7951 8907 7.391275 AGTTTATGGGCATTGGAAAATTTTCTG 59.609 33.333 25.86 18.66 37.35 3.02
7952 8908 3.410508 TGGGCATTGGAAAATTTTCTGC 58.589 40.909 25.86 25.20 36.03 4.26
7953 8909 2.749076 GGGCATTGGAAAATTTTCTGCC 59.251 45.455 33.75 33.75 46.72 4.85
7954 8910 3.410508 GGCATTGGAAAATTTTCTGCCA 58.589 40.909 35.08 23.43 46.70 4.92
7955 8911 4.011698 GGCATTGGAAAATTTTCTGCCAT 58.988 39.130 35.08 19.89 46.70 4.40
7956 8912 5.184711 GGCATTGGAAAATTTTCTGCCATA 58.815 37.500 35.08 18.24 46.70 2.74
7957 8913 5.647225 GGCATTGGAAAATTTTCTGCCATAA 59.353 36.000 35.08 20.58 46.70 1.90
7958 8914 6.403527 GGCATTGGAAAATTTTCTGCCATAAC 60.404 38.462 35.08 20.13 46.70 1.89
7959 8915 6.149142 GCATTGGAAAATTTTCTGCCATAACA 59.851 34.615 25.86 12.80 37.35 2.41
7960 8916 7.624764 GCATTGGAAAATTTTCTGCCATAACAG 60.625 37.037 25.86 9.37 37.35 3.16
7961 8917 6.418057 TGGAAAATTTTCTGCCATAACAGT 57.582 33.333 25.86 0.00 38.84 3.55
7962 8918 7.531857 TGGAAAATTTTCTGCCATAACAGTA 57.468 32.000 25.86 0.00 38.84 2.74
7963 8919 7.957002 TGGAAAATTTTCTGCCATAACAGTAA 58.043 30.769 25.86 0.00 38.84 2.24
7964 8920 8.424918 TGGAAAATTTTCTGCCATAACAGTAAA 58.575 29.630 25.86 0.00 39.99 2.01
7965 8921 9.267084 GGAAAATTTTCTGCCATAACAGTAAAA 57.733 29.630 25.86 0.00 39.41 1.52
7967 8923 9.830975 AAAATTTTCTGCCATAACAGTAAAACT 57.169 25.926 0.00 0.00 39.41 2.66
7971 8927 5.381757 TCTGCCATAACAGTAAAACTGGTT 58.618 37.500 11.47 6.19 45.36 3.67
7972 8928 6.535540 TCTGCCATAACAGTAAAACTGGTTA 58.464 36.000 11.47 7.86 45.36 2.85
7973 8929 7.172342 TCTGCCATAACAGTAAAACTGGTTAT 58.828 34.615 11.47 9.43 45.36 1.89
7974 8930 8.322828 TCTGCCATAACAGTAAAACTGGTTATA 58.677 33.333 11.47 0.71 45.36 0.98
7975 8931 9.120538 CTGCCATAACAGTAAAACTGGTTATAT 57.879 33.333 11.47 2.71 45.36 0.86
7976 8932 9.469097 TGCCATAACAGTAAAACTGGTTATATT 57.531 29.630 11.47 0.00 45.36 1.28
7989 8945 9.884636 AAACTGGTTATATTATTTTTGGCCTTC 57.115 29.630 3.32 0.00 0.00 3.46
7990 8946 8.838649 ACTGGTTATATTATTTTTGGCCTTCT 57.161 30.769 3.32 0.00 0.00 2.85
7991 8947 9.267071 ACTGGTTATATTATTTTTGGCCTTCTT 57.733 29.630 3.32 0.00 0.00 2.52
7992 8948 9.750125 CTGGTTATATTATTTTTGGCCTTCTTC 57.250 33.333 3.32 0.00 0.00 2.87
7993 8949 8.700973 TGGTTATATTATTTTTGGCCTTCTTCC 58.299 33.333 3.32 0.00 0.00 3.46
7994 8950 8.924303 GGTTATATTATTTTTGGCCTTCTTCCT 58.076 33.333 3.32 0.00 0.00 3.36
8000 8956 8.896320 TTATTTTTGGCCTTCTTCCTTTTTAC 57.104 30.769 3.32 0.00 0.00 2.01
8001 8957 4.948341 TTTGGCCTTCTTCCTTTTTACC 57.052 40.909 3.32 0.00 0.00 2.85
8002 8958 2.884320 TGGCCTTCTTCCTTTTTACCC 58.116 47.619 3.32 0.00 0.00 3.69
8003 8959 2.178106 TGGCCTTCTTCCTTTTTACCCA 59.822 45.455 3.32 0.00 0.00 4.51
8004 8960 3.181412 TGGCCTTCTTCCTTTTTACCCAT 60.181 43.478 3.32 0.00 0.00 4.00
8005 8961 4.044825 TGGCCTTCTTCCTTTTTACCCATA 59.955 41.667 3.32 0.00 0.00 2.74
8006 8962 5.208890 GGCCTTCTTCCTTTTTACCCATAT 58.791 41.667 0.00 0.00 0.00 1.78
8007 8963 6.068735 TGGCCTTCTTCCTTTTTACCCATATA 60.069 38.462 3.32 0.00 0.00 0.86
8008 8964 7.010771 GGCCTTCTTCCTTTTTACCCATATAT 58.989 38.462 0.00 0.00 0.00 0.86
8009 8965 7.509318 GGCCTTCTTCCTTTTTACCCATATATT 59.491 37.037 0.00 0.00 0.00 1.28
8010 8966 8.360390 GCCTTCTTCCTTTTTACCCATATATTG 58.640 37.037 0.00 0.00 0.00 1.90
8011 8967 9.640952 CCTTCTTCCTTTTTACCCATATATTGA 57.359 33.333 0.00 0.00 0.00 2.57
8022 8978 8.887264 TTACCCATATATTGAAACAAAGTGGT 57.113 30.769 0.00 0.00 0.00 4.16
8023 8979 7.169158 ACCCATATATTGAAACAAAGTGGTG 57.831 36.000 0.00 0.00 0.00 4.17
8024 8980 6.154363 ACCCATATATTGAAACAAAGTGGTGG 59.846 38.462 0.00 0.00 0.00 4.61
8025 8981 6.154363 CCCATATATTGAAACAAAGTGGTGGT 59.846 38.462 0.00 0.00 0.00 4.16
8026 8982 7.340743 CCCATATATTGAAACAAAGTGGTGGTA 59.659 37.037 0.00 0.00 0.00 3.25
8027 8983 8.405531 CCATATATTGAAACAAAGTGGTGGTAG 58.594 37.037 0.00 0.00 0.00 3.18
8028 8984 6.834168 ATATTGAAACAAAGTGGTGGTAGG 57.166 37.500 0.00 0.00 0.00 3.18
8029 8985 2.938838 TGAAACAAAGTGGTGGTAGGG 58.061 47.619 0.00 0.00 0.00 3.53
8030 8986 2.235891 GAAACAAAGTGGTGGTAGGGG 58.764 52.381 0.00 0.00 0.00 4.79
8031 8987 1.525175 AACAAAGTGGTGGTAGGGGA 58.475 50.000 0.00 0.00 0.00 4.81
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.469945 AGGAAATAGATGAGGTGTCCGAAA 59.530 41.667 0.00 0.00 0.00 3.46
1 2 4.030913 AGGAAATAGATGAGGTGTCCGAA 58.969 43.478 0.00 0.00 0.00 4.30
2 3 3.384789 CAGGAAATAGATGAGGTGTCCGA 59.615 47.826 0.00 0.00 0.00 4.55
3 4 3.493350 CCAGGAAATAGATGAGGTGTCCG 60.493 52.174 0.00 0.00 0.00 4.79
4 5 3.711704 TCCAGGAAATAGATGAGGTGTCC 59.288 47.826 0.00 0.00 0.00 4.02
5 6 4.443598 GGTCCAGGAAATAGATGAGGTGTC 60.444 50.000 0.00 0.00 0.00 3.67
6 7 3.456277 GGTCCAGGAAATAGATGAGGTGT 59.544 47.826 0.00 0.00 0.00 4.16
7 8 3.181450 GGGTCCAGGAAATAGATGAGGTG 60.181 52.174 0.00 0.00 0.00 4.00
8 9 3.049344 GGGTCCAGGAAATAGATGAGGT 58.951 50.000 0.00 0.00 0.00 3.85
43 44 8.405531 GGGTGACACAATAGTTACGTTACTATA 58.594 37.037 23.30 7.81 39.75 1.31
65 66 4.937620 CGTGGAGGAATATATGATTGGGTG 59.062 45.833 0.00 0.00 0.00 4.61
72 73 4.523173 GGAGTGACGTGGAGGAATATATGA 59.477 45.833 0.00 0.00 0.00 2.15
88 89 0.840722 TGGAAGGGGGAAGGAGTGAC 60.841 60.000 0.00 0.00 0.00 3.67
102 103 0.107456 CGATGGGAGGTGGATGGAAG 59.893 60.000 0.00 0.00 0.00 3.46
104 105 2.443394 GCGATGGGAGGTGGATGGA 61.443 63.158 0.00 0.00 0.00 3.41
143 144 0.926628 GCACGAACGGACAAAAACGG 60.927 55.000 0.00 0.00 0.00 4.44
212 213 0.820871 GGCAATGGGGTTTAATGCGA 59.179 50.000 0.00 0.00 37.88 5.10
238 240 1.302993 GAAACAGGGGGCGCTTACA 60.303 57.895 7.64 0.00 0.00 2.41
329 331 0.180642 TCTAGATCTGAGGCGACGGT 59.819 55.000 5.18 0.00 0.00 4.83
487 491 1.569653 CTAACCTTCTTCCCCGTCCT 58.430 55.000 0.00 0.00 0.00 3.85
710 724 4.936823 CCGTACGAATCGGGGGCG 62.937 72.222 18.76 5.60 43.68 6.13
711 725 3.530260 TCCGTACGAATCGGGGGC 61.530 66.667 18.76 0.00 46.82 5.80
723 737 2.034879 GTCTGTCCGTCCGTCCGTA 61.035 63.158 0.00 0.00 0.00 4.02
724 738 3.360340 GTCTGTCCGTCCGTCCGT 61.360 66.667 0.00 0.00 0.00 4.69
725 739 4.112341 GGTCTGTCCGTCCGTCCG 62.112 72.222 0.00 0.00 0.00 4.79
1078 1117 2.432628 GAAGCGGGTGTGGACGAG 60.433 66.667 0.00 0.00 0.00 4.18
1213 1252 5.245526 TCACTGGAGATATGATGACAGGATG 59.754 44.000 0.00 0.00 46.00 3.51
1540 1628 0.374758 CAACGGTCGAATCCATGCAG 59.625 55.000 0.00 0.00 0.00 4.41
1670 1758 3.116531 GTTGTCGTGGCGCTACCC 61.117 66.667 18.88 9.69 37.83 3.69
1671 1759 2.356553 TGTTGTCGTGGCGCTACC 60.357 61.111 18.88 5.74 39.84 3.18
1673 1761 0.666274 CTTCTGTTGTCGTGGCGCTA 60.666 55.000 7.64 0.00 0.00 4.26
2080 2179 0.807667 ATCGTGCTGGACAATCGCTC 60.808 55.000 0.00 0.00 0.00 5.03
2972 3083 5.207110 CCAGAATCTGGTAGTAGGTCATG 57.793 47.826 20.76 0.00 45.82 3.07
3345 3465 0.677731 GCATGTAGCTCCCACTTGCA 60.678 55.000 16.84 0.00 43.10 4.08
3351 3471 1.603842 CCAGTGCATGTAGCTCCCA 59.396 57.895 0.00 0.00 45.94 4.37
3674 3797 4.736126 GCAATAAGCAATAACTGGGGTT 57.264 40.909 0.00 0.00 44.79 4.11
3713 3836 4.426704 AGCTAAGAAACTAACCCCAGAGA 58.573 43.478 0.00 0.00 0.00 3.10
3715 3838 6.886178 ATTAGCTAAGAAACTAACCCCAGA 57.114 37.500 12.54 0.00 31.51 3.86
3809 3935 5.105228 ACAAGCAACAATGGATTATCAAGGG 60.105 40.000 0.00 0.00 0.00 3.95
4161 4405 7.440523 AAACTGTCATAGTGGAAGATTGTTC 57.559 36.000 0.00 0.00 40.26 3.18
4220 4464 6.708285 ACGGTAATAACACCTGAAGAATTCT 58.292 36.000 0.88 0.88 38.09 2.40
4459 5126 8.851541 ACGTAATACAGGTTATTTCTGGAAAA 57.148 30.769 0.00 0.00 36.62 2.29
4736 5403 5.007626 TCAAACCAAACTCTGAGATGAAACG 59.992 40.000 12.44 0.71 0.00 3.60
4747 5414 6.263168 CCAATAAGTCTGTCAAACCAAACTCT 59.737 38.462 0.00 0.00 0.00 3.24
4904 5571 1.524008 GGTGGCAAAAGGGGTTCTCG 61.524 60.000 0.00 0.00 0.00 4.04
4935 5602 9.589111 AACGAAGGTTAAAATTTAAATGTGTGT 57.411 25.926 0.39 0.00 33.72 3.72
4963 5630 3.763897 ACAAAGCTCACAAGGACAGTTTT 59.236 39.130 0.00 0.00 0.00 2.43
5020 5688 2.450476 ACATCCATTTGAGGGACAAGC 58.550 47.619 0.00 0.00 39.77 4.01
5021 5689 5.688807 AGATACATCCATTTGAGGGACAAG 58.311 41.667 0.00 0.00 39.77 3.16
5023 5691 5.221722 GCTAGATACATCCATTTGAGGGACA 60.222 44.000 0.00 0.00 37.23 4.02
5024 5692 5.221722 TGCTAGATACATCCATTTGAGGGAC 60.222 44.000 0.00 0.00 37.23 4.46
5025 5693 4.907269 TGCTAGATACATCCATTTGAGGGA 59.093 41.667 0.00 0.00 39.14 4.20
5026 5694 4.999950 GTGCTAGATACATCCATTTGAGGG 59.000 45.833 0.00 0.00 0.00 4.30
5028 5696 5.614308 TGGTGCTAGATACATCCATTTGAG 58.386 41.667 0.00 0.00 0.00 3.02
5029 5697 5.628797 TGGTGCTAGATACATCCATTTGA 57.371 39.130 0.00 0.00 0.00 2.69
5031 5699 7.902920 AATTTGGTGCTAGATACATCCATTT 57.097 32.000 0.00 0.00 0.00 2.32
5032 5700 8.220559 ACTAATTTGGTGCTAGATACATCCATT 58.779 33.333 0.00 0.00 0.00 3.16
5033 5701 7.749666 ACTAATTTGGTGCTAGATACATCCAT 58.250 34.615 0.00 0.00 0.00 3.41
5035 5703 7.934120 AGAACTAATTTGGTGCTAGATACATCC 59.066 37.037 0.00 0.00 0.00 3.51
5036 5704 8.894768 AGAACTAATTTGGTGCTAGATACATC 57.105 34.615 0.00 0.00 0.00 3.06
5037 5705 9.988815 CTAGAACTAATTTGGTGCTAGATACAT 57.011 33.333 18.64 0.00 42.59 2.29
5038 5706 9.197306 TCTAGAACTAATTTGGTGCTAGATACA 57.803 33.333 20.95 5.18 43.28 2.29
5043 5711 9.988815 ATGTATCTAGAACTAATTTGGTGCTAG 57.011 33.333 17.74 17.74 41.79 3.42
5045 5713 9.331282 GAATGTATCTAGAACTAATTTGGTGCT 57.669 33.333 0.00 0.00 0.00 4.40
5046 5714 9.109393 TGAATGTATCTAGAACTAATTTGGTGC 57.891 33.333 0.00 0.00 0.00 5.01
5063 5731 9.178427 GCAAGCTTATCTTCAAATGAATGTATC 57.822 33.333 0.00 0.00 33.01 2.24
5064 5732 7.859377 CGCAAGCTTATCTTCAAATGAATGTAT 59.141 33.333 0.00 0.00 33.01 2.29
5066 5734 6.032094 CGCAAGCTTATCTTCAAATGAATGT 58.968 36.000 0.00 0.00 33.01 2.71
5067 5735 6.195983 GTCGCAAGCTTATCTTCAAATGAATG 59.804 38.462 0.00 0.00 31.27 2.67
5071 5739 4.973396 TGTCGCAAGCTTATCTTCAAATG 58.027 39.130 0.00 0.00 31.27 2.32
5072 5740 5.182001 ACTTGTCGCAAGCTTATCTTCAAAT 59.818 36.000 16.24 0.00 31.27 2.32
5074 5742 4.065088 ACTTGTCGCAAGCTTATCTTCAA 58.935 39.130 16.24 1.23 31.27 2.69
5075 5743 3.664107 ACTTGTCGCAAGCTTATCTTCA 58.336 40.909 16.24 0.00 31.27 3.02
5076 5744 4.670227 AACTTGTCGCAAGCTTATCTTC 57.330 40.909 16.24 0.00 31.27 2.87
5078 5746 5.438761 AAAAACTTGTCGCAAGCTTATCT 57.561 34.783 16.24 0.00 37.18 1.98
5099 5767 6.117975 ACTAAATACTTCCTCCGTCCAAAA 57.882 37.500 0.00 0.00 0.00 2.44
5102 5770 5.716228 TGTAACTAAATACTTCCTCCGTCCA 59.284 40.000 0.00 0.00 0.00 4.02
5103 5771 6.212888 TGTAACTAAATACTTCCTCCGTCC 57.787 41.667 0.00 0.00 0.00 4.79
5104 5772 9.978044 ATAATGTAACTAAATACTTCCTCCGTC 57.022 33.333 0.00 0.00 0.00 4.79
5105 5773 9.760077 CATAATGTAACTAAATACTTCCTCCGT 57.240 33.333 0.00 0.00 0.00 4.69
5219 5891 7.305813 TGGTACTGTAGAAATACCAGTTTCA 57.694 36.000 0.00 0.00 42.70 2.69
5240 5912 6.762333 TGATGACGATGAATAGATGATTGGT 58.238 36.000 0.00 0.00 0.00 3.67
5369 6041 6.183360 TGCTAAGCAATCTCACAATAAAGCTC 60.183 38.462 0.00 0.00 34.76 4.09
5428 6101 4.504340 GGCAAACTACCAGTGGAGTTCTTA 60.504 45.833 18.40 0.00 34.81 2.10
5647 6320 4.342092 AGCAAGAGCACCTTTGTTTTGTAT 59.658 37.500 0.00 0.00 45.49 2.29
5724 6398 6.425114 AGTTTCACGTCATATGGAATATCAGC 59.575 38.462 2.13 0.00 37.44 4.26
5757 6431 8.798859 AGGGATCAGTGATGCATAATTAATAC 57.201 34.615 23.97 4.81 31.96 1.89
6170 6872 6.486657 TAAACAAGTTTCACATAGCAGAAGCT 59.513 34.615 0.81 0.00 42.88 3.74
6403 7298 2.298610 GGGGCTACAAACTAATGAGGC 58.701 52.381 0.00 0.00 0.00 4.70
6408 7303 3.933861 CCTCTGGGGCTACAAACTAAT 57.066 47.619 0.00 0.00 0.00 1.73
6461 7356 4.051922 GGACAAAGGAGCATCTATACGTG 58.948 47.826 0.00 0.00 33.73 4.49
6502 7400 2.675844 CAACTGACCAAGTGAAACGACA 59.324 45.455 0.00 0.00 45.86 4.35
6537 7435 9.462174 CAGTTTTAAATTTCACAAGCACTGATA 57.538 29.630 0.00 0.00 31.47 2.15
6571 7469 1.094650 TTTCACTGTTCGCTGCAGCA 61.095 50.000 36.03 21.33 42.21 4.41
6602 7500 0.402121 GAACAACCAGCTCTCCCCTT 59.598 55.000 0.00 0.00 0.00 3.95
6648 7546 6.674694 ACAGATGCATAACTCATGAGAAAC 57.325 37.500 29.27 13.13 36.69 2.78
6727 7626 1.531365 CCCAAGTTGCAAGGCCTGA 60.531 57.895 5.69 0.00 0.00 3.86
6739 7638 0.889186 AATTCGCGTCTTGCCCAAGT 60.889 50.000 5.77 0.00 42.08 3.16
6802 7701 1.118965 TCAGCAAAGGGTCAGACCGA 61.119 55.000 13.80 0.19 39.83 4.69
6901 7800 1.478137 GAGAATCCGGTGAATCGACG 58.522 55.000 0.00 0.00 0.00 5.12
7110 8044 7.934120 ACTTTACAATCTGTTTTGCTACTCTCT 59.066 33.333 0.00 0.00 0.00 3.10
7111 8045 8.089115 ACTTTACAATCTGTTTTGCTACTCTC 57.911 34.615 0.00 0.00 0.00 3.20
7164 8102 2.525629 GGGTTGGGTTGGGTTGGG 60.526 66.667 0.00 0.00 0.00 4.12
7165 8103 1.533033 GAGGGTTGGGTTGGGTTGG 60.533 63.158 0.00 0.00 0.00 3.77
7166 8104 1.112916 GTGAGGGTTGGGTTGGGTTG 61.113 60.000 0.00 0.00 0.00 3.77
7167 8105 1.231928 GTGAGGGTTGGGTTGGGTT 59.768 57.895 0.00 0.00 0.00 4.11
7168 8106 2.774633 GGTGAGGGTTGGGTTGGGT 61.775 63.158 0.00 0.00 0.00 4.51
7169 8107 2.117423 GGTGAGGGTTGGGTTGGG 59.883 66.667 0.00 0.00 0.00 4.12
7170 8108 2.282180 CGGTGAGGGTTGGGTTGG 60.282 66.667 0.00 0.00 0.00 3.77
7171 8109 1.599797 GACGGTGAGGGTTGGGTTG 60.600 63.158 0.00 0.00 0.00 3.77
7172 8110 2.826003 GGACGGTGAGGGTTGGGTT 61.826 63.158 0.00 0.00 0.00 4.11
7173 8111 3.246880 GGACGGTGAGGGTTGGGT 61.247 66.667 0.00 0.00 0.00 4.51
7174 8112 4.388499 CGGACGGTGAGGGTTGGG 62.388 72.222 0.00 0.00 0.00 4.12
7175 8113 3.584868 GACGGACGGTGAGGGTTGG 62.585 68.421 0.00 0.00 0.00 3.77
7176 8114 2.048503 GACGGACGGTGAGGGTTG 60.049 66.667 0.00 0.00 0.00 3.77
7177 8115 2.203596 AGACGGACGGTGAGGGTT 60.204 61.111 0.00 0.00 0.00 4.11
7178 8116 2.989824 CAGACGGACGGTGAGGGT 60.990 66.667 0.00 0.00 0.00 4.34
7297 8240 0.244994 GCAGACAGACAGACGACCAT 59.755 55.000 0.00 0.00 0.00 3.55
7331 8278 0.320374 CTAGGCACAGAACGGACCAA 59.680 55.000 0.00 0.00 0.00 3.67
7332 8279 0.830444 ACTAGGCACAGAACGGACCA 60.830 55.000 0.00 0.00 0.00 4.02
7333 8280 0.320697 AACTAGGCACAGAACGGACC 59.679 55.000 0.00 0.00 0.00 4.46
7371 8320 3.004315 TCTTTCATGCCGAAACAAGGAAC 59.996 43.478 0.00 0.00 38.72 3.62
7374 8323 2.095059 CCTCTTTCATGCCGAAACAAGG 60.095 50.000 0.00 7.47 38.72 3.61
7376 8325 2.813754 CTCCTCTTTCATGCCGAAACAA 59.186 45.455 0.00 0.00 38.72 2.83
7378 8327 2.675348 CTCTCCTCTTTCATGCCGAAAC 59.325 50.000 0.00 0.00 38.72 2.78
7383 8332 0.182299 CCCCTCTCCTCTTTCATGCC 59.818 60.000 0.00 0.00 0.00 4.40
7412 8361 1.972075 TCACACTTGAACCGGACCATA 59.028 47.619 9.46 0.00 0.00 2.74
7431 8380 3.779759 TGAGCAAAAACAACACATGGTC 58.220 40.909 0.00 0.00 38.60 4.02
7481 8430 9.194972 GATTGATTTTTCCTCTAAATCCTTCCT 57.805 33.333 0.00 0.00 39.92 3.36
7482 8431 8.971073 TGATTGATTTTTCCTCTAAATCCTTCC 58.029 33.333 0.00 0.00 39.92 3.46
7594 8543 6.008960 AGAGAAAGCAAAATGAGTCCAGAAT 58.991 36.000 0.00 0.00 0.00 2.40
7597 8546 5.002516 AGAGAGAAAGCAAAATGAGTCCAG 58.997 41.667 0.00 0.00 0.00 3.86
7614 8563 4.040936 AGTTTCTACAGCCAGAGAGAGA 57.959 45.455 0.00 0.00 0.00 3.10
7615 8564 4.219507 TGAAGTTTCTACAGCCAGAGAGAG 59.780 45.833 0.00 0.00 0.00 3.20
7672 8624 4.781621 TCAAGAGGATGGATGGATGGATAG 59.218 45.833 0.00 0.00 0.00 2.08
7721 8677 1.415659 ACTGCTGGTATGCTCTCCATC 59.584 52.381 0.00 0.00 35.34 3.51
7727 8683 2.393271 AACTGACTGCTGGTATGCTC 57.607 50.000 0.00 0.00 0.00 4.26
7729 8685 1.135575 GCAAACTGACTGCTGGTATGC 60.136 52.381 0.00 0.00 36.84 3.14
7762 8718 2.672874 CGATTTCGCAATGGAGAAGACA 59.327 45.455 0.00 0.00 34.26 3.41
7772 8728 3.738982 TGGATGGATACGATTTCGCAAT 58.261 40.909 0.00 0.00 44.43 3.56
7776 8732 3.925379 TGGATGGATGGATACGATTTCG 58.075 45.455 0.00 0.00 46.33 3.46
7777 8733 4.878397 GGATGGATGGATGGATACGATTTC 59.122 45.833 0.00 0.00 42.51 2.17
7778 8734 4.537688 AGGATGGATGGATGGATACGATTT 59.462 41.667 0.00 0.00 42.51 2.17
7779 8735 4.107072 AGGATGGATGGATGGATACGATT 58.893 43.478 0.00 0.00 42.51 3.34
7780 8736 3.708631 GAGGATGGATGGATGGATACGAT 59.291 47.826 0.00 0.00 42.51 3.73
7781 8737 3.099905 GAGGATGGATGGATGGATACGA 58.900 50.000 0.00 0.00 42.51 3.43
7782 8738 3.102972 AGAGGATGGATGGATGGATACG 58.897 50.000 0.00 0.00 42.51 3.06
7783 8739 4.533707 TCAAGAGGATGGATGGATGGATAC 59.466 45.833 0.00 0.00 0.00 2.24
7784 8740 4.766768 TCAAGAGGATGGATGGATGGATA 58.233 43.478 0.00 0.00 0.00 2.59
7785 8741 3.587951 CTCAAGAGGATGGATGGATGGAT 59.412 47.826 0.00 0.00 0.00 3.41
7786 8742 2.977580 CTCAAGAGGATGGATGGATGGA 59.022 50.000 0.00 0.00 0.00 3.41
7787 8743 2.709934 ACTCAAGAGGATGGATGGATGG 59.290 50.000 1.73 0.00 0.00 3.51
7788 8744 4.434545 AACTCAAGAGGATGGATGGATG 57.565 45.455 1.73 0.00 0.00 3.51
7789 8745 6.013553 CAGATAACTCAAGAGGATGGATGGAT 60.014 42.308 1.73 0.00 0.00 3.41
7790 8746 5.306419 CAGATAACTCAAGAGGATGGATGGA 59.694 44.000 1.73 0.00 0.00 3.41
7791 8747 5.549347 CAGATAACTCAAGAGGATGGATGG 58.451 45.833 1.73 0.00 0.00 3.51
7792 8748 4.996122 GCAGATAACTCAAGAGGATGGATG 59.004 45.833 1.73 0.00 0.00 3.51
7793 8749 4.041444 GGCAGATAACTCAAGAGGATGGAT 59.959 45.833 1.73 0.00 0.00 3.41
7794 8750 3.389329 GGCAGATAACTCAAGAGGATGGA 59.611 47.826 1.73 0.00 0.00 3.41
7795 8751 3.390639 AGGCAGATAACTCAAGAGGATGG 59.609 47.826 1.73 0.00 0.00 3.51
7796 8752 4.686191 AGGCAGATAACTCAAGAGGATG 57.314 45.455 1.73 0.00 0.00 3.51
7797 8753 4.102367 GGAAGGCAGATAACTCAAGAGGAT 59.898 45.833 1.73 0.00 0.00 3.24
7798 8754 3.452627 GGAAGGCAGATAACTCAAGAGGA 59.547 47.826 1.73 0.00 0.00 3.71
7799 8755 3.432890 GGGAAGGCAGATAACTCAAGAGG 60.433 52.174 1.73 0.00 0.00 3.69
7800 8756 3.454082 AGGGAAGGCAGATAACTCAAGAG 59.546 47.826 0.00 0.00 0.00 2.85
7801 8757 3.198635 CAGGGAAGGCAGATAACTCAAGA 59.801 47.826 0.00 0.00 0.00 3.02
7802 8758 3.539604 CAGGGAAGGCAGATAACTCAAG 58.460 50.000 0.00 0.00 0.00 3.02
7803 8759 2.239654 CCAGGGAAGGCAGATAACTCAA 59.760 50.000 0.00 0.00 0.00 3.02
7804 8760 1.839994 CCAGGGAAGGCAGATAACTCA 59.160 52.381 0.00 0.00 0.00 3.41
7805 8761 2.629336 CCAGGGAAGGCAGATAACTC 57.371 55.000 0.00 0.00 0.00 3.01
7825 8781 3.248446 TTTCTTCCCGTCGGGCCAG 62.248 63.158 26.42 22.00 43.94 4.85
7826 8782 3.243053 TTTCTTCCCGTCGGGCCA 61.243 61.111 26.42 13.43 43.94 5.36
7827 8783 1.891722 TAGTTTCTTCCCGTCGGGCC 61.892 60.000 26.42 8.42 43.94 5.80
7828 8784 0.177373 ATAGTTTCTTCCCGTCGGGC 59.823 55.000 26.42 10.39 43.94 6.13
7829 8785 2.223900 GGTATAGTTTCTTCCCGTCGGG 60.224 54.545 25.31 25.31 46.11 5.14
7830 8786 2.428171 TGGTATAGTTTCTTCCCGTCGG 59.572 50.000 3.60 3.60 0.00 4.79
7831 8787 3.788333 TGGTATAGTTTCTTCCCGTCG 57.212 47.619 0.00 0.00 0.00 5.12
7832 8788 5.936372 AGTTTTGGTATAGTTTCTTCCCGTC 59.064 40.000 0.00 0.00 0.00 4.79
7833 8789 5.872963 AGTTTTGGTATAGTTTCTTCCCGT 58.127 37.500 0.00 0.00 0.00 5.28
7834 8790 5.935789 TGAGTTTTGGTATAGTTTCTTCCCG 59.064 40.000 0.00 0.00 0.00 5.14
7835 8791 6.940867 ACTGAGTTTTGGTATAGTTTCTTCCC 59.059 38.462 0.00 0.00 0.00 3.97
7836 8792 7.981102 ACTGAGTTTTGGTATAGTTTCTTCC 57.019 36.000 0.00 0.00 0.00 3.46
7839 8795 9.281371 GGTAAACTGAGTTTTGGTATAGTTTCT 57.719 33.333 16.49 0.00 38.72 2.52
7840 8796 8.225777 CGGTAAACTGAGTTTTGGTATAGTTTC 58.774 37.037 16.49 0.00 38.72 2.78
7841 8797 7.933033 TCGGTAAACTGAGTTTTGGTATAGTTT 59.067 33.333 16.49 0.00 40.32 2.66
7842 8798 7.444299 TCGGTAAACTGAGTTTTGGTATAGTT 58.556 34.615 16.49 0.00 37.01 2.24
7843 8799 6.996509 TCGGTAAACTGAGTTTTGGTATAGT 58.003 36.000 16.49 0.00 37.01 2.12
7844 8800 7.521509 CTCGGTAAACTGAGTTTTGGTATAG 57.478 40.000 16.49 3.65 42.86 1.31
7875 8831 8.439286 CGATTTTCACAACAGAAAAAGGAAAAA 58.561 29.630 6.03 0.00 46.81 1.94
7876 8832 7.815068 TCGATTTTCACAACAGAAAAAGGAAAA 59.185 29.630 6.03 0.00 46.81 2.29
7877 8833 7.274686 GTCGATTTTCACAACAGAAAAAGGAAA 59.725 33.333 6.03 0.00 46.81 3.13
7878 8834 6.750039 GTCGATTTTCACAACAGAAAAAGGAA 59.250 34.615 6.03 0.00 46.81 3.36
7879 8835 6.094881 AGTCGATTTTCACAACAGAAAAAGGA 59.905 34.615 6.03 4.39 46.81 3.36
7880 8836 6.197096 CAGTCGATTTTCACAACAGAAAAAGG 59.803 38.462 6.03 2.45 46.81 3.11
7881 8837 6.747280 ACAGTCGATTTTCACAACAGAAAAAG 59.253 34.615 6.03 4.49 46.81 2.27
7882 8838 6.616947 ACAGTCGATTTTCACAACAGAAAAA 58.383 32.000 6.03 0.00 46.81 1.94
7884 8840 5.584649 AGACAGTCGATTTTCACAACAGAAA 59.415 36.000 0.00 0.00 35.82 2.52
7885 8841 5.006649 CAGACAGTCGATTTTCACAACAGAA 59.993 40.000 0.00 0.00 0.00 3.02
7886 8842 4.507756 CAGACAGTCGATTTTCACAACAGA 59.492 41.667 0.00 0.00 0.00 3.41
7887 8843 4.766007 CAGACAGTCGATTTTCACAACAG 58.234 43.478 0.00 0.00 0.00 3.16
7888 8844 3.002246 GCAGACAGTCGATTTTCACAACA 59.998 43.478 0.00 0.00 0.00 3.33
7889 8845 3.248602 AGCAGACAGTCGATTTTCACAAC 59.751 43.478 0.00 0.00 0.00 3.32
7890 8846 3.466836 AGCAGACAGTCGATTTTCACAA 58.533 40.909 0.00 0.00 0.00 3.33
7891 8847 3.111853 AGCAGACAGTCGATTTTCACA 57.888 42.857 0.00 0.00 0.00 3.58
7892 8848 5.786401 AATAGCAGACAGTCGATTTTCAC 57.214 39.130 0.00 0.00 0.00 3.18
7893 8849 5.700832 ACAAATAGCAGACAGTCGATTTTCA 59.299 36.000 0.00 0.00 0.00 2.69
7894 8850 6.170675 ACAAATAGCAGACAGTCGATTTTC 57.829 37.500 0.00 0.00 0.00 2.29
7895 8851 6.373779 CAACAAATAGCAGACAGTCGATTTT 58.626 36.000 0.00 0.00 0.00 1.82
7896 8852 5.106555 CCAACAAATAGCAGACAGTCGATTT 60.107 40.000 0.00 0.00 0.00 2.17
7897 8853 4.393062 CCAACAAATAGCAGACAGTCGATT 59.607 41.667 0.00 0.00 0.00 3.34
7898 8854 3.935203 CCAACAAATAGCAGACAGTCGAT 59.065 43.478 0.00 0.00 0.00 3.59
7899 8855 3.006430 TCCAACAAATAGCAGACAGTCGA 59.994 43.478 0.00 0.00 0.00 4.20
7900 8856 3.325870 TCCAACAAATAGCAGACAGTCG 58.674 45.455 0.00 0.00 0.00 4.18
7901 8857 4.569943 TCTCCAACAAATAGCAGACAGTC 58.430 43.478 0.00 0.00 0.00 3.51
7902 8858 4.284490 TCTCTCCAACAAATAGCAGACAGT 59.716 41.667 0.00 0.00 0.00 3.55
7903 8859 4.825422 TCTCTCCAACAAATAGCAGACAG 58.175 43.478 0.00 0.00 0.00 3.51
7904 8860 4.284490 ACTCTCTCCAACAAATAGCAGACA 59.716 41.667 0.00 0.00 0.00 3.41
7905 8861 4.826556 ACTCTCTCCAACAAATAGCAGAC 58.173 43.478 0.00 0.00 0.00 3.51
7906 8862 5.489792 AACTCTCTCCAACAAATAGCAGA 57.510 39.130 0.00 0.00 0.00 4.26
7907 8863 7.201679 CCATAAACTCTCTCCAACAAATAGCAG 60.202 40.741 0.00 0.00 0.00 4.24
7908 8864 6.599244 CCATAAACTCTCTCCAACAAATAGCA 59.401 38.462 0.00 0.00 0.00 3.49
7909 8865 6.038714 CCCATAAACTCTCTCCAACAAATAGC 59.961 42.308 0.00 0.00 0.00 2.97
7910 8866 6.038714 GCCCATAAACTCTCTCCAACAAATAG 59.961 42.308 0.00 0.00 0.00 1.73
7911 8867 5.885912 GCCCATAAACTCTCTCCAACAAATA 59.114 40.000 0.00 0.00 0.00 1.40
7912 8868 4.706962 GCCCATAAACTCTCTCCAACAAAT 59.293 41.667 0.00 0.00 0.00 2.32
7913 8869 4.079253 GCCCATAAACTCTCTCCAACAAA 58.921 43.478 0.00 0.00 0.00 2.83
7914 8870 3.073798 TGCCCATAAACTCTCTCCAACAA 59.926 43.478 0.00 0.00 0.00 2.83
7915 8871 2.642311 TGCCCATAAACTCTCTCCAACA 59.358 45.455 0.00 0.00 0.00 3.33
7916 8872 3.350219 TGCCCATAAACTCTCTCCAAC 57.650 47.619 0.00 0.00 0.00 3.77
7917 8873 4.272489 CAATGCCCATAAACTCTCTCCAA 58.728 43.478 0.00 0.00 0.00 3.53
7918 8874 3.371917 CCAATGCCCATAAACTCTCTCCA 60.372 47.826 0.00 0.00 0.00 3.86
7919 8875 3.117888 TCCAATGCCCATAAACTCTCTCC 60.118 47.826 0.00 0.00 0.00 3.71
7920 8876 4.156455 TCCAATGCCCATAAACTCTCTC 57.844 45.455 0.00 0.00 0.00 3.20
7921 8877 4.591321 TTCCAATGCCCATAAACTCTCT 57.409 40.909 0.00 0.00 0.00 3.10
7922 8878 5.659440 TTTTCCAATGCCCATAAACTCTC 57.341 39.130 0.00 0.00 0.00 3.20
7923 8879 6.625532 AATTTTCCAATGCCCATAAACTCT 57.374 33.333 0.00 0.00 0.00 3.24
7924 8880 7.607607 AGAAAATTTTCCAATGCCCATAAACTC 59.392 33.333 24.01 0.00 37.92 3.01
7925 8881 7.391275 CAGAAAATTTTCCAATGCCCATAAACT 59.609 33.333 24.01 0.58 37.92 2.66
7926 8882 7.529158 CAGAAAATTTTCCAATGCCCATAAAC 58.471 34.615 24.01 0.00 37.92 2.01
7927 8883 6.150809 GCAGAAAATTTTCCAATGCCCATAAA 59.849 34.615 24.01 0.00 37.92 1.40
7928 8884 5.647225 GCAGAAAATTTTCCAATGCCCATAA 59.353 36.000 24.01 0.00 37.92 1.90
7929 8885 5.184711 GCAGAAAATTTTCCAATGCCCATA 58.815 37.500 24.01 0.00 37.92 2.74
7930 8886 4.011698 GCAGAAAATTTTCCAATGCCCAT 58.988 39.130 24.01 2.93 37.92 4.00
7931 8887 3.410508 GCAGAAAATTTTCCAATGCCCA 58.589 40.909 24.01 0.00 37.92 5.36
7932 8888 2.749076 GGCAGAAAATTTTCCAATGCCC 59.251 45.455 32.64 22.25 44.11 5.36
7934 8890 6.149142 TGTTATGGCAGAAAATTTTCCAATGC 59.851 34.615 24.68 24.68 37.92 3.56
7935 8891 7.388500 ACTGTTATGGCAGAAAATTTTCCAATG 59.612 33.333 24.01 17.61 39.62 2.82
7936 8892 7.452562 ACTGTTATGGCAGAAAATTTTCCAAT 58.547 30.769 24.01 15.50 39.62 3.16
7937 8893 6.825610 ACTGTTATGGCAGAAAATTTTCCAA 58.174 32.000 24.01 10.24 39.62 3.53
7938 8894 6.418057 ACTGTTATGGCAGAAAATTTTCCA 57.582 33.333 24.01 17.39 39.62 3.53
7939 8895 8.825667 TTTACTGTTATGGCAGAAAATTTTCC 57.174 30.769 24.01 12.66 39.62 3.13
7941 8897 9.830975 AGTTTTACTGTTATGGCAGAAAATTTT 57.169 25.926 2.28 2.28 39.62 1.82
7942 8898 9.260002 CAGTTTTACTGTTATGGCAGAAAATTT 57.740 29.630 0.00 0.00 41.19 1.82
7943 8899 7.872483 CCAGTTTTACTGTTATGGCAGAAAATT 59.128 33.333 0.00 0.00 44.50 1.82
7944 8900 7.015195 ACCAGTTTTACTGTTATGGCAGAAAAT 59.985 33.333 0.00 0.00 44.50 1.82
7945 8901 6.322712 ACCAGTTTTACTGTTATGGCAGAAAA 59.677 34.615 0.00 0.00 44.50 2.29
7946 8902 5.830991 ACCAGTTTTACTGTTATGGCAGAAA 59.169 36.000 0.00 0.00 44.50 2.52
7947 8903 5.381757 ACCAGTTTTACTGTTATGGCAGAA 58.618 37.500 6.13 0.00 44.50 3.02
7948 8904 4.980573 ACCAGTTTTACTGTTATGGCAGA 58.019 39.130 6.13 0.00 44.50 4.26
7949 8905 5.705609 AACCAGTTTTACTGTTATGGCAG 57.294 39.130 6.13 0.00 44.50 4.85
7950 8906 9.469097 AATATAACCAGTTTTACTGTTATGGCA 57.531 29.630 16.26 0.00 44.50 4.92
7963 8919 9.884636 GAAGGCCAAAAATAATATAACCAGTTT 57.115 29.630 5.01 0.00 0.00 2.66
7964 8920 9.267071 AGAAGGCCAAAAATAATATAACCAGTT 57.733 29.630 5.01 0.00 0.00 3.16
7965 8921 8.838649 AGAAGGCCAAAAATAATATAACCAGT 57.161 30.769 5.01 0.00 0.00 4.00
7966 8922 9.750125 GAAGAAGGCCAAAAATAATATAACCAG 57.250 33.333 5.01 0.00 0.00 4.00
7967 8923 8.700973 GGAAGAAGGCCAAAAATAATATAACCA 58.299 33.333 5.01 0.00 0.00 3.67
7968 8924 8.924303 AGGAAGAAGGCCAAAAATAATATAACC 58.076 33.333 5.01 0.00 0.00 2.85
7974 8930 9.502091 GTAAAAAGGAAGAAGGCCAAAAATAAT 57.498 29.630 5.01 0.00 0.00 1.28
7975 8931 7.934665 GGTAAAAAGGAAGAAGGCCAAAAATAA 59.065 33.333 5.01 0.00 0.00 1.40
7976 8932 7.446769 GGTAAAAAGGAAGAAGGCCAAAAATA 58.553 34.615 5.01 0.00 0.00 1.40
7977 8933 6.296026 GGTAAAAAGGAAGAAGGCCAAAAAT 58.704 36.000 5.01 0.00 0.00 1.82
7978 8934 5.396996 GGGTAAAAAGGAAGAAGGCCAAAAA 60.397 40.000 5.01 0.00 0.00 1.94
7979 8935 4.101898 GGGTAAAAAGGAAGAAGGCCAAAA 59.898 41.667 5.01 0.00 0.00 2.44
7980 8936 3.644265 GGGTAAAAAGGAAGAAGGCCAAA 59.356 43.478 5.01 0.00 0.00 3.28
7981 8937 3.236047 GGGTAAAAAGGAAGAAGGCCAA 58.764 45.455 5.01 0.00 0.00 4.52
7982 8938 2.178106 TGGGTAAAAAGGAAGAAGGCCA 59.822 45.455 5.01 0.00 0.00 5.36
7983 8939 2.884320 TGGGTAAAAAGGAAGAAGGCC 58.116 47.619 0.00 0.00 0.00 5.19
7984 8940 8.360390 CAATATATGGGTAAAAAGGAAGAAGGC 58.640 37.037 0.00 0.00 0.00 4.35
7985 8941 9.640952 TCAATATATGGGTAAAAAGGAAGAAGG 57.359 33.333 0.00 0.00 0.00 3.46
7996 8952 9.315363 ACCACTTTGTTTCAATATATGGGTAAA 57.685 29.630 0.00 0.00 0.00 2.01
7997 8953 8.744652 CACCACTTTGTTTCAATATATGGGTAA 58.255 33.333 0.00 0.00 0.00 2.85
7998 8954 7.340743 CCACCACTTTGTTTCAATATATGGGTA 59.659 37.037 0.00 0.00 0.00 3.69
7999 8955 6.154363 CCACCACTTTGTTTCAATATATGGGT 59.846 38.462 0.00 0.00 0.00 4.51
8000 8956 6.154363 ACCACCACTTTGTTTCAATATATGGG 59.846 38.462 0.00 0.00 0.00 4.00
8001 8957 7.169158 ACCACCACTTTGTTTCAATATATGG 57.831 36.000 0.00 0.00 0.00 2.74
8002 8958 8.405531 CCTACCACCACTTTGTTTCAATATATG 58.594 37.037 0.00 0.00 0.00 1.78
8003 8959 7.559897 CCCTACCACCACTTTGTTTCAATATAT 59.440 37.037 0.00 0.00 0.00 0.86
8004 8960 6.887545 CCCTACCACCACTTTGTTTCAATATA 59.112 38.462 0.00 0.00 0.00 0.86
8005 8961 5.714806 CCCTACCACCACTTTGTTTCAATAT 59.285 40.000 0.00 0.00 0.00 1.28
8006 8962 5.074115 CCCTACCACCACTTTGTTTCAATA 58.926 41.667 0.00 0.00 0.00 1.90
8007 8963 3.895041 CCCTACCACCACTTTGTTTCAAT 59.105 43.478 0.00 0.00 0.00 2.57
8008 8964 3.292460 CCCTACCACCACTTTGTTTCAA 58.708 45.455 0.00 0.00 0.00 2.69
8009 8965 2.423660 CCCCTACCACCACTTTGTTTCA 60.424 50.000 0.00 0.00 0.00 2.69
8010 8966 2.158579 TCCCCTACCACCACTTTGTTTC 60.159 50.000 0.00 0.00 0.00 2.78
8011 8967 1.854280 TCCCCTACCACCACTTTGTTT 59.146 47.619 0.00 0.00 0.00 2.83
8012 8968 1.525175 TCCCCTACCACCACTTTGTT 58.475 50.000 0.00 0.00 0.00 2.83
8013 8969 3.267916 TCCCCTACCACCACTTTGT 57.732 52.632 0.00 0.00 0.00 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.