Multiple sequence alignment - TraesCS4A01G319800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G319800 chr4A 100.000 4382 0 0 1 4382 608601654 608606035 0.000000e+00 8093.0
1 TraesCS4A01G319800 chr4A 100.000 3625 0 0 4807 8431 608606460 608610084 0.000000e+00 6695.0
2 TraesCS4A01G319800 chr4A 88.482 382 26 9 1765 2132 664590558 664590935 6.000000e-121 446.0
3 TraesCS4A01G319800 chr4A 84.472 322 39 4 1389 1704 664590003 664590319 2.960000e-79 307.0
4 TraesCS4A01G319800 chr4A 94.286 140 8 0 6051 6190 608607460 608607599 1.840000e-51 215.0
5 TraesCS4A01G319800 chr4A 94.286 140 8 0 5807 5946 608607704 608607843 1.840000e-51 215.0
6 TraesCS4A01G319800 chr4A 83.453 139 22 1 422 560 93936657 93936794 2.470000e-25 128.0
7 TraesCS4A01G319800 chr5D 97.097 3100 63 12 4807 7891 563856680 563853593 0.000000e+00 5201.0
8 TraesCS4A01G319800 chr5D 96.762 2038 46 12 2362 4382 563858748 563856714 0.000000e+00 3380.0
9 TraesCS4A01G319800 chr5D 88.589 1481 94 38 901 2363 563860112 563858689 0.000000e+00 1729.0
10 TraesCS4A01G319800 chr5D 85.507 552 60 10 276 813 563860831 563860286 7.390000e-155 558.0
11 TraesCS4A01G319800 chr5D 89.688 320 19 7 8115 8431 563853545 563853237 6.130000e-106 396.0
12 TraesCS4A01G319800 chr5D 89.683 252 18 3 6 256 563861389 563861145 1.770000e-81 315.0
13 TraesCS4A01G319800 chr5D 93.056 144 10 0 5803 5946 563855444 563855301 2.380000e-50 211.0
14 TraesCS4A01G319800 chr5D 87.395 119 8 2 7414 7532 563853714 563853603 6.870000e-26 130.0
15 TraesCS4A01G319800 chr5B 93.188 2701 93 15 5391 8031 706307547 706304878 0.000000e+00 3884.0
16 TraesCS4A01G319800 chr5B 92.815 2018 70 28 2362 4361 706309903 706307943 0.000000e+00 2854.0
17 TraesCS4A01G319800 chr5B 84.478 786 72 26 1387 2132 516604639 516603864 0.000000e+00 730.0
18 TraesCS4A01G319800 chr5B 85.040 742 53 23 1435 2132 444453992 444453265 0.000000e+00 702.0
19 TraesCS4A01G319800 chr5B 93.168 483 23 8 1905 2378 706310309 706309828 0.000000e+00 701.0
20 TraesCS4A01G319800 chr5B 82.830 827 52 26 1054 1815 706311106 706310305 0.000000e+00 658.0
21 TraesCS4A01G319800 chr5B 96.429 364 13 0 5038 5401 706307936 706307573 1.210000e-167 601.0
22 TraesCS4A01G319800 chr5B 87.744 359 16 11 8087 8431 706304896 706304552 2.210000e-105 394.0
23 TraesCS4A01G319800 chr5B 87.550 249 13 4 8 256 706312200 706311970 1.080000e-68 272.0
24 TraesCS4A01G319800 chr5B 93.056 144 10 0 5803 5946 706306869 706306726 2.380000e-50 211.0
25 TraesCS4A01G319800 chr5B 92.857 140 7 1 6051 6190 706307117 706306981 5.160000e-47 200.0
26 TraesCS4A01G319800 chr5B 88.889 144 12 4 276 417 706311648 706311507 3.130000e-39 174.0
27 TraesCS4A01G319800 chr5B 81.776 214 20 8 7451 7663 706305102 706304907 2.440000e-35 161.0
28 TraesCS4A01G319800 chr5B 91.304 69 2 2 5969 6037 576292002 576291938 3.240000e-14 91.6
29 TraesCS4A01G319800 chr2B 92.994 628 41 2 7109 7735 248123239 248122614 0.000000e+00 913.0
30 TraesCS4A01G319800 chr2B 83.949 785 74 25 1387 2132 321107193 321107964 0.000000e+00 704.0
31 TraesCS4A01G319800 chr2B 90.987 233 13 4 8085 8314 248107223 248106996 2.960000e-79 307.0
32 TraesCS4A01G319800 chr2B 89.032 155 11 5 7741 7891 248107468 248107316 4.020000e-43 187.0
33 TraesCS4A01G319800 chr4D 84.694 784 70 26 1389 2132 446552293 446551520 0.000000e+00 737.0
34 TraesCS4A01G319800 chr4D 84.655 782 70 23 1391 2132 99933444 99934215 0.000000e+00 734.0
35 TraesCS4A01G319800 chr4D 83.636 165 25 2 431 594 7739540 7739703 4.080000e-33 154.0
36 TraesCS4A01G319800 chr7B 84.478 786 71 22 1387 2132 656487789 656487015 0.000000e+00 728.0
37 TraesCS4A01G319800 chr7B 84.211 570 49 23 1596 2132 574901010 574900449 4.510000e-142 516.0
38 TraesCS4A01G319800 chr7B 90.667 75 5 1 5970 6042 488372780 488372706 1.940000e-16 99.0
39 TraesCS4A01G319800 chr7B 96.875 32 1 0 611 642 237481914 237481945 4.000000e-03 54.7
40 TraesCS4A01G319800 chr3B 84.685 777 68 27 1397 2132 375546990 375547756 0.000000e+00 728.0
41 TraesCS4A01G319800 chr7A 83.883 788 70 27 1387 2132 919344 918572 0.000000e+00 699.0
42 TraesCS4A01G319800 chr7A 88.580 324 21 6 1822 2132 662679444 662679764 6.180000e-101 379.0
43 TraesCS4A01G319800 chr7A 93.846 65 3 1 5970 6033 93921729 93921793 6.970000e-16 97.1
44 TraesCS4A01G319800 chr1D 88.713 443 27 9 1702 2132 308935563 308935994 3.490000e-143 520.0
45 TraesCS4A01G319800 chr1D 79.641 167 31 3 431 596 409996077 409995913 5.350000e-22 117.0
46 TraesCS4A01G319800 chr3A 86.784 227 24 2 1387 1607 373433241 373433467 1.820000e-61 248.0
47 TraesCS4A01G319800 chr2A 86.784 227 24 2 1387 1607 59861704 59861930 1.820000e-61 248.0
48 TraesCS4A01G319800 chr7D 82.209 163 28 1 431 593 622126463 622126302 1.140000e-28 139.0
49 TraesCS4A01G319800 chr7D 76.259 278 48 10 431 694 503012968 503013241 1.910000e-26 132.0
50 TraesCS4A01G319800 chr7D 78.049 164 35 1 431 594 38864160 38864322 1.500000e-17 102.0
51 TraesCS4A01G319800 chr7D 78.070 114 18 5 610 719 562159382 562159492 1.960000e-06 65.8
52 TraesCS4A01G319800 chr7D 100.000 30 0 0 868 897 555176168 555176139 1.000000e-03 56.5
53 TraesCS4A01G319800 chr6A 81.560 141 25 1 430 570 496193604 496193743 1.920000e-21 115.0
54 TraesCS4A01G319800 chr6A 90.541 74 3 1 5970 6039 609594898 609594971 2.510000e-15 95.3
55 TraesCS4A01G319800 chr4B 79.874 159 27 5 431 585 96634661 96634504 2.490000e-20 111.0
56 TraesCS4A01G319800 chr4B 89.394 66 6 1 6845 6909 223397095 223397160 1.950000e-11 82.4
57 TraesCS4A01G319800 chr1B 95.588 68 3 0 5970 6037 17017351 17017418 8.950000e-20 110.0
58 TraesCS4A01G319800 chr1A 94.203 69 4 0 5969 6037 13348897 13348829 1.160000e-18 106.0
59 TraesCS4A01G319800 chr1A 94.118 68 4 0 5970 6037 13571100 13571033 4.160000e-18 104.0
60 TraesCS4A01G319800 chr6D 93.151 73 2 2 5965 6037 93529489 93529420 4.160000e-18 104.0
61 TraesCS4A01G319800 chr5A 80.153 131 19 4 6845 6971 529806917 529807044 3.240000e-14 91.6
62 TraesCS4A01G319800 chr6B 80.000 110 18 4 610 718 25568214 25568320 2.520000e-10 78.7
63 TraesCS4A01G319800 chr2D 100.000 30 0 0 868 897 14256349 14256378 1.000000e-03 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G319800 chr4A 608601654 608610084 8430 False 3804.500000 8093 97.143000 1 8431 4 chr4A.!!$F2 8430
1 TraesCS4A01G319800 chr4A 664590003 664590935 932 False 376.500000 446 86.477000 1389 2132 2 chr4A.!!$F3 743
2 TraesCS4A01G319800 chr5D 563853237 563861389 8152 True 1490.000000 5201 90.972125 6 8431 8 chr5D.!!$R1 8425
3 TraesCS4A01G319800 chr5B 706304552 706312200 7648 True 919.090909 3884 90.027455 8 8431 11 chr5B.!!$R4 8423
4 TraesCS4A01G319800 chr5B 516603864 516604639 775 True 730.000000 730 84.478000 1387 2132 1 chr5B.!!$R2 745
5 TraesCS4A01G319800 chr5B 444453265 444453992 727 True 702.000000 702 85.040000 1435 2132 1 chr5B.!!$R1 697
6 TraesCS4A01G319800 chr2B 248122614 248123239 625 True 913.000000 913 92.994000 7109 7735 1 chr2B.!!$R1 626
7 TraesCS4A01G319800 chr2B 321107193 321107964 771 False 704.000000 704 83.949000 1387 2132 1 chr2B.!!$F1 745
8 TraesCS4A01G319800 chr4D 446551520 446552293 773 True 737.000000 737 84.694000 1389 2132 1 chr4D.!!$R1 743
9 TraesCS4A01G319800 chr4D 99933444 99934215 771 False 734.000000 734 84.655000 1391 2132 1 chr4D.!!$F2 741
10 TraesCS4A01G319800 chr7B 656487015 656487789 774 True 728.000000 728 84.478000 1387 2132 1 chr7B.!!$R3 745
11 TraesCS4A01G319800 chr7B 574900449 574901010 561 True 516.000000 516 84.211000 1596 2132 1 chr7B.!!$R2 536
12 TraesCS4A01G319800 chr3B 375546990 375547756 766 False 728.000000 728 84.685000 1397 2132 1 chr3B.!!$F1 735
13 TraesCS4A01G319800 chr7A 918572 919344 772 True 699.000000 699 83.883000 1387 2132 1 chr7A.!!$R1 745

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
672 993 0.037326 TTCATCGAGGGTGAGTGCAC 60.037 55.0 9.40 9.4 44.39 4.57 F
2363 3064 0.036952 ACTTCCCACGATCAGCACAG 60.037 55.0 0.00 0.0 0.00 3.66 F
2364 3065 0.036952 CTTCCCACGATCAGCACAGT 60.037 55.0 0.00 0.0 0.00 3.55 F
2365 3066 0.037326 TTCCCACGATCAGCACAGTC 60.037 55.0 0.00 0.0 0.00 3.51 F
2424 3125 0.367887 CACGATCAGCACATCACACG 59.632 55.0 0.00 0.0 0.00 4.49 F
4976 5693 0.890683 GCCATTGGGGTCAAGTTCTG 59.109 55.0 4.53 0.0 39.65 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2406 3107 0.038251 ACGTGTGATGTGCTGATCGT 60.038 50.000 0.00 0.0 0.00 3.73 R
4317 5034 4.525686 CAAAATGGATTTGTTGGTTTGCG 58.474 39.130 0.00 0.0 42.84 4.85 R
4976 5693 3.254892 GGGCGCAATTATACTAGCTCTC 58.745 50.000 10.83 0.0 0.00 3.20 R
5570 6324 7.261325 GTGCAAGATCTAACATCTTCACTAGA 58.739 38.462 0.00 0.0 36.32 2.43 R
5588 6342 1.455849 CCTTCCAGGTGGTGCAAGA 59.544 57.895 0.00 0.0 36.34 3.02 R
8138 8957 0.034756 TGTCCCCATTGTGTCACTCG 59.965 55.000 4.27 0.0 0.00 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 58 3.629855 ACTCTACCTGTGATCGACATCTG 59.370 47.826 0.00 0.00 32.74 2.90
81 82 7.785033 TGTGTGATGTCTAATGTGTCAGATAT 58.215 34.615 0.00 0.00 0.00 1.63
82 83 8.912988 TGTGTGATGTCTAATGTGTCAGATATA 58.087 33.333 0.00 0.00 0.00 0.86
83 84 9.750125 GTGTGATGTCTAATGTGTCAGATATAA 57.250 33.333 0.00 0.00 0.00 0.98
110 111 1.407437 GGAAAGTGCTCATGACGGGAT 60.407 52.381 0.00 0.00 0.00 3.85
111 112 1.667724 GAAAGTGCTCATGACGGGATG 59.332 52.381 0.00 0.00 0.00 3.51
237 239 8.384607 TCATAGCGTATTTGCAAAATATGGTA 57.615 30.769 17.19 20.10 36.87 3.25
273 275 9.349713 TCAAAATATGGTAAACAACTCTGAAGT 57.650 29.630 0.00 0.00 37.32 3.01
274 276 9.612620 CAAAATATGGTAAACAACTCTGAAGTC 57.387 33.333 0.00 0.00 33.48 3.01
351 657 1.112113 ACAGGCTATCCCGTGTGTAG 58.888 55.000 0.00 0.00 39.21 2.74
367 675 6.206048 CCGTGTGTAGTTTCCTTCCTTATTTT 59.794 38.462 0.00 0.00 0.00 1.82
447 755 6.404734 GGTGTGAATTGAATGGTTATGAGGAC 60.405 42.308 0.00 0.00 0.00 3.85
460 768 0.686441 TGAGGACAGTGGTATCCCCG 60.686 60.000 0.00 0.00 35.38 5.73
466 774 1.054406 CAGTGGTATCCCCGACCCAT 61.054 60.000 0.00 0.00 35.99 4.00
467 775 0.763223 AGTGGTATCCCCGACCCATC 60.763 60.000 0.00 0.00 35.99 3.51
471 779 0.969894 GTATCCCCGACCCATCAGAG 59.030 60.000 0.00 0.00 0.00 3.35
480 788 2.029020 CGACCCATCAGAGTTCAAGTCA 60.029 50.000 0.00 0.00 0.00 3.41
486 794 5.105187 CCCATCAGAGTTCAAGTCATAGACA 60.105 44.000 0.00 0.00 34.60 3.41
502 810 0.319900 GACATGACACTGGTGCTCGT 60.320 55.000 0.00 0.00 0.00 4.18
512 821 3.745975 CACTGGTGCTCGTATTTTTCTGA 59.254 43.478 0.00 0.00 0.00 3.27
534 843 7.523293 TGAATTTATTTCAGACTTTCTGGCA 57.477 32.000 3.40 0.00 44.39 4.92
545 854 2.033299 ACTTTCTGGCAATGTGTGTTCG 59.967 45.455 0.00 0.00 0.00 3.95
553 862 0.250727 AATGTGTGTTCGGTGGGAGG 60.251 55.000 0.00 0.00 0.00 4.30
556 865 1.458777 TGTGTTCGGTGGGAGGAGT 60.459 57.895 0.00 0.00 0.00 3.85
558 867 2.273179 TGTTCGGTGGGAGGAGTCG 61.273 63.158 0.00 0.00 0.00 4.18
576 885 2.139917 TCGTTCCCATCGACAACAAAG 58.860 47.619 0.00 0.00 32.30 2.77
582 891 1.148310 CATCGACAACAAAGGCGTCT 58.852 50.000 0.00 0.00 0.00 4.18
593 902 0.249911 AAGGCGTCTGTGGTGACTTC 60.250 55.000 0.00 0.00 35.00 3.01
605 926 4.159506 TGTGGTGACTTCATGATATGTCGA 59.840 41.667 14.83 0.00 32.64 4.20
607 928 5.755375 GTGGTGACTTCATGATATGTCGATT 59.245 40.000 14.83 0.00 32.64 3.34
608 929 6.258727 GTGGTGACTTCATGATATGTCGATTT 59.741 38.462 14.83 0.00 32.64 2.17
630 951 6.944234 TTAGTCTCTCGAAGATGCTCATAA 57.056 37.500 0.00 0.00 36.11 1.90
631 952 5.843673 AGTCTCTCGAAGATGCTCATAAA 57.156 39.130 0.00 0.00 36.11 1.40
638 959 4.893524 TCGAAGATGCTCATAAAGGTAGGA 59.106 41.667 0.00 0.00 0.00 2.94
640 961 5.636965 CGAAGATGCTCATAAAGGTAGGATG 59.363 44.000 0.00 0.00 0.00 3.51
642 963 6.107901 AGATGCTCATAAAGGTAGGATGTC 57.892 41.667 0.00 0.00 0.00 3.06
643 964 4.689612 TGCTCATAAAGGTAGGATGTCC 57.310 45.455 0.00 0.00 0.00 4.02
645 966 3.654414 CTCATAAAGGTAGGATGTCCGC 58.346 50.000 0.00 0.00 42.08 5.54
658 979 1.143373 TGTCCGCGCGTGTATTCATC 61.143 55.000 29.95 8.04 0.00 2.92
660 981 1.942223 CCGCGCGTGTATTCATCGA 60.942 57.895 29.95 0.00 0.00 3.59
662 983 1.846648 GCGCGTGTATTCATCGAGG 59.153 57.895 8.43 0.00 0.00 4.63
670 991 2.159099 TGTATTCATCGAGGGTGAGTGC 60.159 50.000 0.00 0.00 0.00 4.40
672 993 0.037326 TTCATCGAGGGTGAGTGCAC 60.037 55.000 9.40 9.40 44.39 4.57
694 1015 0.522705 TCGTGTATGCGAGCGACTTC 60.523 55.000 0.00 0.00 35.83 3.01
696 1017 0.522705 GTGTATGCGAGCGACTTCGA 60.523 55.000 2.02 0.00 43.03 3.71
697 1018 0.522705 TGTATGCGAGCGACTTCGAC 60.523 55.000 2.02 0.00 43.03 4.20
734 1055 6.963049 AGAAAAATAGTTACCTAGTGCGTG 57.037 37.500 0.00 0.00 0.00 5.34
762 1083 7.145323 ACAATCAGATTTTGTTTTTAGTCCCG 58.855 34.615 0.00 0.00 33.64 5.14
766 1087 6.319152 TCAGATTTTGTTTTTAGTCCCGTTGA 59.681 34.615 0.00 0.00 0.00 3.18
775 1096 2.185004 AGTCCCGTTGAACAATCAGG 57.815 50.000 0.00 0.00 36.78 3.86
778 1099 2.740447 GTCCCGTTGAACAATCAGGTAC 59.260 50.000 0.00 0.00 36.78 3.34
785 1106 2.093869 TGAACAATCAGGTACTACGGGC 60.094 50.000 0.00 0.00 36.02 6.13
790 1111 1.985662 CAGGTACTACGGGCCCACA 60.986 63.158 24.92 7.47 36.02 4.17
797 1118 0.820074 CTACGGGCCCACAACACAAA 60.820 55.000 24.92 0.00 0.00 2.83
806 1127 1.750778 CCACAACACAAACTGAAGGCT 59.249 47.619 0.00 0.00 0.00 4.58
823 1206 4.243008 TCACCGCGTTGGCCTGAA 62.243 61.111 3.08 0.00 43.94 3.02
827 1210 2.972505 CGCGTTGGCCTGAACAGT 60.973 61.111 3.32 0.00 35.02 3.55
876 1260 8.379457 AGTTTACCAGACATAAACTCAAAGTC 57.621 34.615 4.67 0.00 45.46 3.01
877 1261 7.444487 AGTTTACCAGACATAAACTCAAAGTCC 59.556 37.037 4.67 0.00 45.46 3.85
879 1263 5.063880 ACCAGACATAAACTCAAAGTCCAC 58.936 41.667 0.00 0.00 0.00 4.02
880 1264 5.063204 CCAGACATAAACTCAAAGTCCACA 58.937 41.667 0.00 0.00 0.00 4.17
881 1265 5.530915 CCAGACATAAACTCAAAGTCCACAA 59.469 40.000 0.00 0.00 0.00 3.33
882 1266 6.039270 CCAGACATAAACTCAAAGTCCACAAA 59.961 38.462 0.00 0.00 0.00 2.83
884 1268 7.012327 CAGACATAAACTCAAAGTCCACAAAGA 59.988 37.037 0.00 0.00 0.00 2.52
885 1269 7.227512 AGACATAAACTCAAAGTCCACAAAGAG 59.772 37.037 0.00 0.00 0.00 2.85
886 1270 6.828785 ACATAAACTCAAAGTCCACAAAGAGT 59.171 34.615 0.00 0.00 37.90 3.24
898 1282 2.749621 CACAAAGAGTGGGATACAAGGC 59.250 50.000 0.00 0.00 44.69 4.35
899 1283 2.644798 ACAAAGAGTGGGATACAAGGCT 59.355 45.455 0.00 0.00 39.74 4.58
915 1369 4.320456 CTGCACGGGCTGGACAGT 62.320 66.667 12.74 0.00 41.91 3.55
931 1385 0.806102 CAGTGATACGGGCCGAACTG 60.806 60.000 35.78 30.28 0.00 3.16
982 1436 2.262471 TAAGTCGCCGTCGCTTCCTC 62.262 60.000 0.00 0.00 35.15 3.71
983 1437 4.117661 GTCGCCGTCGCTTCCTCT 62.118 66.667 0.00 0.00 35.26 3.69
984 1438 2.437180 TCGCCGTCGCTTCCTCTA 60.437 61.111 0.00 0.00 35.26 2.43
1034 1491 1.216710 CTCCTTCCAGAGCACGGAC 59.783 63.158 0.00 0.00 30.29 4.79
1037 1494 1.674057 CTTCCAGAGCACGGACCTT 59.326 57.895 0.00 0.00 30.29 3.50
1039 1496 0.250295 TTCCAGAGCACGGACCTTTG 60.250 55.000 0.00 0.00 30.29 2.77
1240 1703 4.862823 CTCCTCCCTCCCCCGTCC 62.863 77.778 0.00 0.00 0.00 4.79
1279 1742 1.281899 CGTCTTCTTCCAGCGATTCC 58.718 55.000 0.00 0.00 0.00 3.01
1327 1790 2.603652 GGGGGAAGCCTCGTTTCCT 61.604 63.158 7.14 0.00 41.59 3.36
1328 1791 1.078356 GGGGAAGCCTCGTTTCCTC 60.078 63.158 7.14 0.00 41.59 3.71
1339 1802 1.135373 TCGTTTCCTCTCGCTCATGTC 60.135 52.381 0.00 0.00 0.00 3.06
1345 1808 4.625607 TCCTCTCGCTCATGTCTAGATA 57.374 45.455 0.00 0.00 0.00 1.98
1349 1812 3.500299 TCTCGCTCATGTCTAGATACAGC 59.500 47.826 10.66 10.66 31.70 4.40
1351 1814 3.251972 TCGCTCATGTCTAGATACAGCAG 59.748 47.826 17.45 12.06 31.70 4.24
1356 1819 5.941788 TCATGTCTAGATACAGCAGGAGTA 58.058 41.667 0.00 0.00 31.70 2.59
1363 1826 8.630917 GTCTAGATACAGCAGGAGTATTTTACA 58.369 37.037 0.00 0.00 32.60 2.41
1365 1828 6.821388 AGATACAGCAGGAGTATTTTACAGG 58.179 40.000 0.00 0.00 32.60 4.00
1394 1867 4.242475 CTGTACATTGTTCTTGACGGCTA 58.758 43.478 0.00 0.00 0.00 3.93
1395 1868 3.991773 TGTACATTGTTCTTGACGGCTAC 59.008 43.478 0.00 0.00 0.00 3.58
1419 1892 2.344500 CCGGTTGCCGTGTAGGAA 59.656 61.111 6.82 0.00 46.80 3.36
1549 2022 2.355513 CCATCTGGAACTCTCTGGTTGG 60.356 54.545 0.00 0.00 37.39 3.77
1571 2049 3.305950 GCCCAATACAAATGCAAGTGTCA 60.306 43.478 8.76 0.00 0.00 3.58
1586 2064 6.262049 TGCAAGTGTCAGTTAATCTGCTTTTA 59.738 34.615 3.59 0.00 43.32 1.52
1681 2178 1.180029 ACTGATCCTGCATTTGTGGC 58.820 50.000 0.00 0.00 0.00 5.01
1700 2197 3.759086 TGGCAACAGAACTTTGTGTGTAA 59.241 39.130 0.00 0.00 46.17 2.41
1833 2518 8.783093 TGGTGAACTGAATGTAACTTCTATTTG 58.217 33.333 0.00 0.00 0.00 2.32
1837 2522 9.334693 GAACTGAATGTAACTTCTATTTGCAAG 57.665 33.333 0.00 0.00 0.00 4.01
1838 2523 8.396272 ACTGAATGTAACTTCTATTTGCAAGT 57.604 30.769 0.00 0.00 34.16 3.16
1851 2536 4.700268 TTTGCAAGTGCCTGTATATGTG 57.300 40.909 0.00 0.00 41.18 3.21
1894 2579 3.197766 TCAGGGAAGCCTTACAGTACATG 59.802 47.826 0.00 0.00 0.00 3.21
2009 2703 6.038356 GGGAATATTTGTTCTGAATGCACTG 58.962 40.000 0.00 0.00 0.00 3.66
2035 2729 0.888285 GCTATGCCATCCCAGTGCTC 60.888 60.000 0.00 0.00 0.00 4.26
2110 2805 6.257630 TGCTTCTTAAAATTGAAAACTGTGCC 59.742 34.615 0.00 0.00 0.00 5.01
2117 2812 9.606631 TTAAAATTGAAAACTGTGCCACTTAAT 57.393 25.926 0.00 0.00 0.00 1.40
2276 2976 0.983378 GCCCCTGGTGACTGTATCCT 60.983 60.000 0.00 0.00 0.00 3.24
2357 3058 3.410631 TTTGCTTACTTCCCACGATCA 57.589 42.857 0.00 0.00 0.00 2.92
2358 3059 2.672961 TGCTTACTTCCCACGATCAG 57.327 50.000 0.00 0.00 0.00 2.90
2359 3060 1.291132 GCTTACTTCCCACGATCAGC 58.709 55.000 0.00 0.00 0.00 4.26
2360 3061 1.405526 GCTTACTTCCCACGATCAGCA 60.406 52.381 0.00 0.00 0.00 4.41
2361 3062 2.271800 CTTACTTCCCACGATCAGCAC 58.728 52.381 0.00 0.00 0.00 4.40
2362 3063 1.262417 TACTTCCCACGATCAGCACA 58.738 50.000 0.00 0.00 0.00 4.57
2363 3064 0.036952 ACTTCCCACGATCAGCACAG 60.037 55.000 0.00 0.00 0.00 3.66
2364 3065 0.036952 CTTCCCACGATCAGCACAGT 60.037 55.000 0.00 0.00 0.00 3.55
2365 3066 0.037326 TTCCCACGATCAGCACAGTC 60.037 55.000 0.00 0.00 0.00 3.51
2366 3067 0.900182 TCCCACGATCAGCACAGTCT 60.900 55.000 0.00 0.00 0.00 3.24
2367 3068 0.817654 CCCACGATCAGCACAGTCTA 59.182 55.000 0.00 0.00 0.00 2.59
2368 3069 1.204704 CCCACGATCAGCACAGTCTAA 59.795 52.381 0.00 0.00 0.00 2.10
2369 3070 2.159043 CCCACGATCAGCACAGTCTAAT 60.159 50.000 0.00 0.00 0.00 1.73
2370 3071 2.862536 CCACGATCAGCACAGTCTAATG 59.137 50.000 0.00 0.00 0.00 1.90
2371 3072 3.515630 CACGATCAGCACAGTCTAATGT 58.484 45.455 0.00 0.00 0.00 2.71
2372 3073 3.928992 CACGATCAGCACAGTCTAATGTT 59.071 43.478 0.00 0.00 0.00 2.71
2373 3074 4.389992 CACGATCAGCACAGTCTAATGTTT 59.610 41.667 0.00 0.00 0.00 2.83
2374 3075 5.576774 CACGATCAGCACAGTCTAATGTTTA 59.423 40.000 0.00 0.00 0.00 2.01
2375 3076 5.807520 ACGATCAGCACAGTCTAATGTTTAG 59.192 40.000 0.00 0.00 0.00 1.85
2376 3077 6.036470 CGATCAGCACAGTCTAATGTTTAGA 58.964 40.000 0.00 0.00 0.00 2.10
2377 3078 6.198029 CGATCAGCACAGTCTAATGTTTAGAG 59.802 42.308 0.00 0.00 0.00 2.43
2378 3079 6.590234 TCAGCACAGTCTAATGTTTAGAGA 57.410 37.500 0.00 0.00 0.00 3.10
2379 3080 6.625362 TCAGCACAGTCTAATGTTTAGAGAG 58.375 40.000 0.00 0.00 0.00 3.20
2380 3081 5.290643 CAGCACAGTCTAATGTTTAGAGAGC 59.709 44.000 0.00 0.00 0.00 4.09
2381 3082 4.568760 GCACAGTCTAATGTTTAGAGAGCC 59.431 45.833 0.00 0.00 0.00 4.70
2382 3083 5.724328 CACAGTCTAATGTTTAGAGAGCCA 58.276 41.667 0.00 0.00 0.00 4.75
2383 3084 6.344500 CACAGTCTAATGTTTAGAGAGCCAT 58.656 40.000 0.00 0.00 0.00 4.40
2384 3085 6.478344 CACAGTCTAATGTTTAGAGAGCCATC 59.522 42.308 0.00 0.00 0.00 3.51
2385 3086 6.382570 ACAGTCTAATGTTTAGAGAGCCATCT 59.617 38.462 0.00 0.00 38.98 2.90
2386 3087 6.700960 CAGTCTAATGTTTAGAGAGCCATCTG 59.299 42.308 0.00 0.00 35.30 2.90
2387 3088 6.382570 AGTCTAATGTTTAGAGAGCCATCTGT 59.617 38.462 0.00 0.00 35.30 3.41
2388 3089 7.044798 GTCTAATGTTTAGAGAGCCATCTGTT 58.955 38.462 0.00 0.00 35.30 3.16
2389 3090 8.198109 GTCTAATGTTTAGAGAGCCATCTGTTA 58.802 37.037 0.00 0.00 35.30 2.41
2390 3091 8.198109 TCTAATGTTTAGAGAGCCATCTGTTAC 58.802 37.037 0.00 0.00 35.30 2.50
2391 3092 5.738619 TGTTTAGAGAGCCATCTGTTACA 57.261 39.130 0.00 0.00 35.30 2.41
2392 3093 6.299805 TGTTTAGAGAGCCATCTGTTACAT 57.700 37.500 0.00 0.00 35.30 2.29
2393 3094 6.108687 TGTTTAGAGAGCCATCTGTTACATG 58.891 40.000 0.00 0.00 35.30 3.21
2394 3095 5.939764 TTAGAGAGCCATCTGTTACATGT 57.060 39.130 2.69 2.69 35.30 3.21
2395 3096 4.134379 AGAGAGCCATCTGTTACATGTG 57.866 45.455 9.11 0.00 35.30 3.21
2396 3097 2.611292 GAGAGCCATCTGTTACATGTGC 59.389 50.000 9.11 0.00 35.30 4.57
2397 3098 2.238144 AGAGCCATCTGTTACATGTGCT 59.762 45.455 9.11 5.61 33.30 4.40
2398 3099 3.012518 GAGCCATCTGTTACATGTGCTT 58.987 45.455 9.11 0.00 31.71 3.91
2399 3100 4.080919 AGAGCCATCTGTTACATGTGCTTA 60.081 41.667 9.11 0.00 33.30 3.09
2400 3101 4.588899 AGCCATCTGTTACATGTGCTTAA 58.411 39.130 9.11 0.00 28.92 1.85
2401 3102 5.195940 AGCCATCTGTTACATGTGCTTAAT 58.804 37.500 9.11 0.00 28.92 1.40
2402 3103 5.653769 AGCCATCTGTTACATGTGCTTAATT 59.346 36.000 9.11 0.00 28.92 1.40
2403 3104 5.973565 GCCATCTGTTACATGTGCTTAATTC 59.026 40.000 9.11 0.00 0.00 2.17
2404 3105 6.498304 CCATCTGTTACATGTGCTTAATTCC 58.502 40.000 9.11 0.00 0.00 3.01
2405 3106 6.460123 CCATCTGTTACATGTGCTTAATTCCC 60.460 42.308 9.11 0.00 0.00 3.97
2406 3107 5.565509 TCTGTTACATGTGCTTAATTCCCA 58.434 37.500 9.11 0.00 0.00 4.37
2407 3108 5.414454 TCTGTTACATGTGCTTAATTCCCAC 59.586 40.000 9.11 0.00 0.00 4.61
2408 3109 4.155099 TGTTACATGTGCTTAATTCCCACG 59.845 41.667 9.11 0.00 32.32 4.94
2409 3110 3.066291 ACATGTGCTTAATTCCCACGA 57.934 42.857 0.00 0.00 32.32 4.35
2410 3111 3.620488 ACATGTGCTTAATTCCCACGAT 58.380 40.909 0.00 0.00 32.32 3.73
2411 3112 3.627577 ACATGTGCTTAATTCCCACGATC 59.372 43.478 0.00 0.00 32.32 3.69
2424 3125 0.367887 CACGATCAGCACATCACACG 59.632 55.000 0.00 0.00 0.00 4.49
2448 3149 6.238374 CGTGTTTTGAGCTCCTCTTCTTTTTA 60.238 38.462 12.15 0.00 0.00 1.52
2449 3150 6.913132 GTGTTTTGAGCTCCTCTTCTTTTTAC 59.087 38.462 12.15 0.00 0.00 2.01
2492 3196 9.256477 GTTGTGTATGCTTATATGTGCTACTAA 57.744 33.333 3.96 0.00 0.00 2.24
2505 3209 6.508030 TGTGCTACTAATTCATATCCCCAA 57.492 37.500 0.00 0.00 0.00 4.12
2563 3267 2.024414 AGGTGTTTGCTTGTTGAGGAC 58.976 47.619 0.00 0.00 0.00 3.85
2657 3361 6.579666 TTCATAATTCACTTGCAGCTTCTT 57.420 33.333 0.00 0.00 0.00 2.52
2862 3567 5.253330 AGATTCGGAGATACCAAAGCAAAA 58.747 37.500 0.00 0.00 38.90 2.44
2910 3615 2.846206 ACAACATCTGCTAAGGGATCCA 59.154 45.455 15.23 0.00 0.00 3.41
3042 3747 4.881273 TCTGTAATGGATGAAAATGACCGG 59.119 41.667 0.00 0.00 0.00 5.28
3498 4203 5.246203 AGCATTCTAGAACCAGACACAGTTA 59.754 40.000 7.48 0.00 0.00 2.24
3898 4603 3.140141 CGTTGCGATGGGGGCATT 61.140 61.111 0.00 0.00 40.62 3.56
4000 4706 9.394477 GTAAGCACTTATGAGTTTACCAAAAAG 57.606 33.333 2.32 0.00 32.54 2.27
4156 4864 8.879227 AGAGATTTGCTAGAAGCCTAGAAATAT 58.121 33.333 0.00 4.72 44.00 1.28
4157 4865 9.500785 GAGATTTGCTAGAAGCCTAGAAATATT 57.499 33.333 0.00 0.00 44.00 1.28
4317 5034 4.742438 TGCCACTTATTTTGAAGACGTC 57.258 40.909 7.70 7.70 0.00 4.34
4842 5559 5.534654 TGCTGGTTTAAGCTTGTGTCTTTAT 59.465 36.000 9.86 0.00 43.90 1.40
4976 5693 0.890683 GCCATTGGGGTCAAGTTCTG 59.109 55.000 4.53 0.00 39.65 3.02
5232 5950 2.134346 CCGGGAAACACAAAAGCAATG 58.866 47.619 0.00 0.00 0.00 2.82
5570 6324 3.012560 GCAGGAAGCGGCAGATAAT 57.987 52.632 1.45 0.00 0.00 1.28
5800 6568 9.309516 GGACTGTTAACATATGAAAGTCGATTA 57.690 33.333 10.38 0.00 34.71 1.75
5851 6619 5.761234 AGTTTAATGAACAAGCCAGTACGAA 59.239 36.000 0.00 0.00 40.84 3.85
5935 6703 8.738645 AACAAAGAGACTTGAAATACAGTTCT 57.261 30.769 0.00 0.00 0.00 3.01
5936 6704 8.738645 ACAAAGAGACTTGAAATACAGTTCTT 57.261 30.769 0.00 0.00 0.00 2.52
5962 6730 8.788325 ATCAAATAACCTGTAACAAGTACTCC 57.212 34.615 0.00 0.00 33.46 3.85
5963 6731 6.869913 TCAAATAACCTGTAACAAGTACTCCG 59.130 38.462 0.00 0.00 33.46 4.63
5967 6735 5.573337 ACCTGTAACAAGTACTCCGTATC 57.427 43.478 0.00 0.00 33.46 2.24
6047 6833 2.362717 CGGAGGGAGTAGTTGAATCCTC 59.637 54.545 0.00 0.00 39.84 3.71
6092 6878 7.444487 ACCCAAGTTTAATCAACAAGAGAGTAC 59.556 37.037 0.00 0.00 37.93 2.73
6245 7031 3.697542 GCATCGGGGTTTACCTATGTTTT 59.302 43.478 0.00 0.00 40.03 2.43
6487 7273 6.387041 TCCTGACGTCATTAATTATCGAGT 57.613 37.500 20.40 0.00 0.00 4.18
6617 7403 9.903682 CTTCAACATTAACTTGTCTGATTGATT 57.096 29.630 0.00 0.00 0.00 2.57
6778 7564 1.428139 AGGCTAGGGCGATAGAGGTTA 59.572 52.381 0.00 0.00 39.81 2.85
6961 7747 5.815740 GGAGATTATTACGAAAAGGCACTCA 59.184 40.000 0.00 0.00 38.49 3.41
7081 7892 1.269998 AGAGTAAGAGCACGTGGACAC 59.730 52.381 18.88 0.00 0.00 3.67
7114 7925 3.293337 ACATGCCTGGTCAGTACGTATA 58.707 45.455 0.00 0.00 0.00 1.47
7165 7976 6.511121 CGGAGGAATATAACCAATTTGTGACG 60.511 42.308 0.00 0.00 0.00 4.35
7574 8386 2.485426 CCACAGAAGTTGCGATGAACAT 59.515 45.455 0.00 0.00 0.00 2.71
7735 8550 8.721133 ACCTGTCCTAAATACCATTTTCTTTT 57.279 30.769 0.00 0.00 0.00 2.27
7796 8611 5.366477 TGAAATATCCTCACAGTAGCATGGA 59.634 40.000 0.00 0.00 0.00 3.41
7883 8702 8.049117 TGTTCTTAAGCTTGGTCATGATATCTT 58.951 33.333 9.86 1.71 0.00 2.40
7906 8725 5.781210 ATATGATCACATGAGTCGTGACT 57.219 39.130 19.28 1.35 45.64 3.41
7921 8740 2.893637 GTGACTAACACGCCATCATCT 58.106 47.619 0.00 0.00 39.78 2.90
7926 8745 2.401583 AACACGCCATCATCTAAGCA 57.598 45.000 0.00 0.00 0.00 3.91
8011 8830 6.731467 AGTGGAATTTAGAAGGGCAATCTAA 58.269 36.000 7.03 7.03 37.55 2.10
8012 8831 7.357471 AGTGGAATTTAGAAGGGCAATCTAAT 58.643 34.615 10.74 0.06 38.72 1.73
8013 8832 7.503902 AGTGGAATTTAGAAGGGCAATCTAATC 59.496 37.037 10.74 7.45 38.72 1.75
8014 8833 7.503902 GTGGAATTTAGAAGGGCAATCTAATCT 59.496 37.037 10.74 3.54 38.72 2.40
8015 8834 7.721399 TGGAATTTAGAAGGGCAATCTAATCTC 59.279 37.037 10.74 10.03 38.72 2.75
8016 8835 7.095017 GGAATTTAGAAGGGCAATCTAATCTCG 60.095 40.741 10.74 0.00 38.72 4.04
8017 8836 3.760580 AGAAGGGCAATCTAATCTCGG 57.239 47.619 0.00 0.00 0.00 4.63
8018 8837 2.147150 GAAGGGCAATCTAATCTCGGC 58.853 52.381 0.00 0.00 0.00 5.54
8019 8838 1.131638 AGGGCAATCTAATCTCGGCA 58.868 50.000 0.00 0.00 0.00 5.69
8020 8839 1.701847 AGGGCAATCTAATCTCGGCAT 59.298 47.619 0.00 0.00 0.00 4.40
8021 8840 2.107204 AGGGCAATCTAATCTCGGCATT 59.893 45.455 0.00 0.00 0.00 3.56
8022 8841 2.485814 GGGCAATCTAATCTCGGCATTC 59.514 50.000 0.00 0.00 0.00 2.67
8023 8842 3.406764 GGCAATCTAATCTCGGCATTCT 58.593 45.455 0.00 0.00 0.00 2.40
8024 8843 4.563580 GGGCAATCTAATCTCGGCATTCTA 60.564 45.833 0.00 0.00 0.00 2.10
8025 8844 4.997395 GGCAATCTAATCTCGGCATTCTAA 59.003 41.667 0.00 0.00 0.00 2.10
8026 8845 5.645497 GGCAATCTAATCTCGGCATTCTAAT 59.355 40.000 0.00 0.00 0.00 1.73
8027 8846 6.150140 GGCAATCTAATCTCGGCATTCTAATT 59.850 38.462 0.00 0.00 0.00 1.40
8028 8847 7.308830 GGCAATCTAATCTCGGCATTCTAATTT 60.309 37.037 0.00 0.00 0.00 1.82
8029 8848 7.536622 GCAATCTAATCTCGGCATTCTAATTTG 59.463 37.037 0.00 0.00 0.00 2.32
8030 8849 8.562892 CAATCTAATCTCGGCATTCTAATTTGT 58.437 33.333 0.00 0.00 0.00 2.83
8031 8850 9.778741 AATCTAATCTCGGCATTCTAATTTGTA 57.221 29.630 0.00 0.00 0.00 2.41
8032 8851 8.818141 TCTAATCTCGGCATTCTAATTTGTAG 57.182 34.615 0.00 0.00 0.00 2.74
8033 8852 6.867662 AATCTCGGCATTCTAATTTGTAGG 57.132 37.500 0.00 0.00 0.00 3.18
8034 8853 5.607939 TCTCGGCATTCTAATTTGTAGGA 57.392 39.130 0.00 0.00 0.00 2.94
8035 8854 5.601662 TCTCGGCATTCTAATTTGTAGGAG 58.398 41.667 0.00 0.00 0.00 3.69
8036 8855 5.128827 TCTCGGCATTCTAATTTGTAGGAGT 59.871 40.000 0.00 0.00 0.00 3.85
8037 8856 6.322969 TCTCGGCATTCTAATTTGTAGGAGTA 59.677 38.462 0.00 0.00 0.00 2.59
8038 8857 6.880484 TCGGCATTCTAATTTGTAGGAGTAA 58.120 36.000 0.00 0.00 0.00 2.24
8039 8858 7.506114 TCGGCATTCTAATTTGTAGGAGTAAT 58.494 34.615 0.00 0.00 0.00 1.89
8040 8859 7.990886 TCGGCATTCTAATTTGTAGGAGTAATT 59.009 33.333 0.00 0.00 0.00 1.40
8041 8860 8.283291 CGGCATTCTAATTTGTAGGAGTAATTC 58.717 37.037 0.00 0.00 0.00 2.17
8063 8882 3.607741 CCAAGACACATCTCAGCATTCT 58.392 45.455 0.00 0.00 32.34 2.40
8068 8887 7.148120 CCAAGACACATCTCAGCATTCTATTTT 60.148 37.037 0.00 0.00 32.34 1.82
8069 8888 7.551035 AGACACATCTCAGCATTCTATTTTC 57.449 36.000 0.00 0.00 0.00 2.29
8071 8890 7.828223 AGACACATCTCAGCATTCTATTTTCTT 59.172 33.333 0.00 0.00 0.00 2.52
8072 8891 9.102757 GACACATCTCAGCATTCTATTTTCTTA 57.897 33.333 0.00 0.00 0.00 2.10
8073 8892 9.624373 ACACATCTCAGCATTCTATTTTCTTAT 57.376 29.630 0.00 0.00 0.00 1.73
8078 8897 9.334947 TCTCAGCATTCTATTTTCTTATCTTGG 57.665 33.333 0.00 0.00 0.00 3.61
8079 8898 9.334947 CTCAGCATTCTATTTTCTTATCTTGGA 57.665 33.333 0.00 0.00 0.00 3.53
8080 8899 9.334947 TCAGCATTCTATTTTCTTATCTTGGAG 57.665 33.333 0.00 0.00 0.00 3.86
8081 8900 9.118300 CAGCATTCTATTTTCTTATCTTGGAGT 57.882 33.333 0.00 0.00 0.00 3.85
8092 8911 9.658799 TTTCTTATCTTGGAGTAAACATCTCAG 57.341 33.333 0.00 0.00 34.04 3.35
8093 8912 7.268586 TCTTATCTTGGAGTAAACATCTCAGC 58.731 38.462 0.00 0.00 34.04 4.26
8094 8913 4.890158 TCTTGGAGTAAACATCTCAGCA 57.110 40.909 0.00 0.00 34.04 4.41
8095 8914 5.426689 TCTTGGAGTAAACATCTCAGCAT 57.573 39.130 0.00 0.00 34.04 3.79
8096 8915 5.809001 TCTTGGAGTAAACATCTCAGCATT 58.191 37.500 0.00 0.00 34.04 3.56
8097 8916 5.877012 TCTTGGAGTAAACATCTCAGCATTC 59.123 40.000 0.00 0.00 34.04 2.67
8098 8917 5.426689 TGGAGTAAACATCTCAGCATTCT 57.573 39.130 0.00 0.00 34.04 2.40
8099 8918 6.544928 TGGAGTAAACATCTCAGCATTCTA 57.455 37.500 0.00 0.00 34.04 2.10
8100 8919 7.129457 TGGAGTAAACATCTCAGCATTCTAT 57.871 36.000 0.00 0.00 34.04 1.98
8101 8920 7.568349 TGGAGTAAACATCTCAGCATTCTATT 58.432 34.615 0.00 0.00 34.04 1.73
8102 8921 8.049117 TGGAGTAAACATCTCAGCATTCTATTT 58.951 33.333 0.00 0.00 34.04 1.40
8103 8922 8.897752 GGAGTAAACATCTCAGCATTCTATTTT 58.102 33.333 0.00 0.00 34.04 1.82
8104 8923 9.928236 GAGTAAACATCTCAGCATTCTATTTTC 57.072 33.333 0.00 0.00 32.79 2.29
8105 8924 9.678260 AGTAAACATCTCAGCATTCTATTTTCT 57.322 29.630 0.00 0.00 0.00 2.52
8138 8957 4.815269 AGAGTAAACATCTCAGCAGTGTC 58.185 43.478 0.00 0.00 34.73 3.67
8248 9067 7.432252 GGATAGCATAGCATACACAAAAACAAC 59.568 37.037 0.00 0.00 0.00 3.32
8302 9121 5.130292 AGTTTCAGCCAGTTCATCATTTG 57.870 39.130 0.00 0.00 0.00 2.32
8307 9126 8.623903 GTTTCAGCCAGTTCATCATTTGATATA 58.376 33.333 0.00 0.00 33.34 0.86
8334 9153 9.163899 TGTATTTAGAGTACAACAACAACAACA 57.836 29.630 0.00 0.00 0.00 3.33
8335 9154 9.991388 GTATTTAGAGTACAACAACAACAACAA 57.009 29.630 0.00 0.00 0.00 2.83
8337 9156 5.560966 AGAGTACAACAACAACAACAAGG 57.439 39.130 0.00 0.00 0.00 3.61
8338 9157 5.250200 AGAGTACAACAACAACAACAAGGA 58.750 37.500 0.00 0.00 0.00 3.36
8370 9189 1.825622 GCTATTCAGGCAGGGGCAC 60.826 63.158 0.00 0.00 43.71 5.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.817258 ACGCCATGCTATCTACTCTCTC 59.183 50.000 0.00 0.00 0.00 3.20
1 2 2.556189 CACGCCATGCTATCTACTCTCT 59.444 50.000 0.00 0.00 0.00 3.10
2 3 2.940147 CACGCCATGCTATCTACTCTC 58.060 52.381 0.00 0.00 0.00 3.20
38 39 3.129462 ACACAGATGTCGATCACAGGTAG 59.871 47.826 0.00 0.00 38.85 3.18
57 58 9.750125 TTATATCTGACACATTAGACATCACAC 57.250 33.333 0.00 0.00 0.00 3.82
81 82 6.929049 CGTCATGAGCACTTTCCCTTATATTA 59.071 38.462 0.00 0.00 0.00 0.98
82 83 5.760253 CGTCATGAGCACTTTCCCTTATATT 59.240 40.000 0.00 0.00 0.00 1.28
83 84 5.300752 CGTCATGAGCACTTTCCCTTATAT 58.699 41.667 0.00 0.00 0.00 0.86
84 85 4.442893 CCGTCATGAGCACTTTCCCTTATA 60.443 45.833 0.00 0.00 0.00 0.98
85 86 3.535561 CGTCATGAGCACTTTCCCTTAT 58.464 45.455 0.00 0.00 0.00 1.73
110 111 2.223803 AATTGGGGCGTTAATGGTCA 57.776 45.000 0.00 0.00 0.00 4.02
111 112 3.603158 AAAATTGGGGCGTTAATGGTC 57.397 42.857 0.00 0.00 0.00 4.02
208 209 9.998381 CATATTTTGCAAATACGCTATGAATTG 57.002 29.630 13.65 0.00 0.00 2.32
256 258 8.603242 TGATTTAGACTTCAGAGTTGTTTACC 57.397 34.615 0.00 0.00 35.88 2.85
259 261 8.956426 TGTTTGATTTAGACTTCAGAGTTGTTT 58.044 29.630 0.00 0.00 35.88 2.83
261 263 8.562892 CATGTTTGATTTAGACTTCAGAGTTGT 58.437 33.333 0.00 0.00 35.88 3.32
264 266 6.150140 GCCATGTTTGATTTAGACTTCAGAGT 59.850 38.462 0.00 0.00 39.32 3.24
265 267 6.149973 TGCCATGTTTGATTTAGACTTCAGAG 59.850 38.462 0.00 0.00 0.00 3.35
267 269 6.258230 TGCCATGTTTGATTTAGACTTCAG 57.742 37.500 0.00 0.00 0.00 3.02
269 271 9.076596 GTTAATGCCATGTTTGATTTAGACTTC 57.923 33.333 0.00 0.00 0.00 3.01
270 272 7.754924 CGTTAATGCCATGTTTGATTTAGACTT 59.245 33.333 0.00 0.00 0.00 3.01
271 273 7.250569 CGTTAATGCCATGTTTGATTTAGACT 58.749 34.615 0.00 0.00 0.00 3.24
272 274 6.472163 CCGTTAATGCCATGTTTGATTTAGAC 59.528 38.462 0.00 0.00 0.00 2.59
273 275 6.559810 CCGTTAATGCCATGTTTGATTTAGA 58.440 36.000 0.00 0.00 0.00 2.10
274 276 5.231991 GCCGTTAATGCCATGTTTGATTTAG 59.768 40.000 0.00 0.00 0.00 1.85
309 614 6.493115 TGTTTCCATGTCCACATAAATTCAGT 59.507 34.615 0.00 0.00 34.26 3.41
351 657 8.770828 GGCAAAAGTAAAAATAAGGAAGGAAAC 58.229 33.333 0.00 0.00 0.00 2.78
367 675 9.660180 AAACTAACAATCTTTTGGCAAAAGTAA 57.340 25.926 37.68 26.67 46.18 2.24
417 725 9.029368 TCATAACCATTCAATTCACACCAATAA 57.971 29.630 0.00 0.00 0.00 1.40
419 727 7.364056 CCTCATAACCATTCAATTCACACCAAT 60.364 37.037 0.00 0.00 0.00 3.16
420 728 6.071447 CCTCATAACCATTCAATTCACACCAA 60.071 38.462 0.00 0.00 0.00 3.67
421 729 5.418524 CCTCATAACCATTCAATTCACACCA 59.581 40.000 0.00 0.00 0.00 4.17
422 730 5.652014 TCCTCATAACCATTCAATTCACACC 59.348 40.000 0.00 0.00 0.00 4.16
460 768 3.685139 TGACTTGAACTCTGATGGGTC 57.315 47.619 0.00 0.00 0.00 4.46
466 774 6.840780 TCATGTCTATGACTTGAACTCTGA 57.159 37.500 11.97 0.00 41.48 3.27
480 788 2.159184 CGAGCACCAGTGTCATGTCTAT 60.159 50.000 0.00 0.00 0.00 1.98
486 794 3.334583 AAATACGAGCACCAGTGTCAT 57.665 42.857 0.00 0.00 0.00 3.06
529 838 0.040157 CACCGAACACACATTGCCAG 60.040 55.000 0.00 0.00 0.00 4.85
530 839 1.451337 CCACCGAACACACATTGCCA 61.451 55.000 0.00 0.00 0.00 4.92
531 840 1.285641 CCACCGAACACACATTGCC 59.714 57.895 0.00 0.00 0.00 4.52
534 843 0.250727 CCTCCCACCGAACACACATT 60.251 55.000 0.00 0.00 0.00 2.71
545 854 2.979649 GGAACGACTCCTCCCACC 59.020 66.667 0.00 0.00 41.61 4.61
556 865 2.139917 CTTTGTTGTCGATGGGAACGA 58.860 47.619 0.00 0.00 37.43 3.85
558 867 1.068541 GCCTTTGTTGTCGATGGGAAC 60.069 52.381 0.00 0.00 0.00 3.62
573 882 0.180406 AAGTCACCACAGACGCCTTT 59.820 50.000 0.00 0.00 43.24 3.11
576 885 0.320771 ATGAAGTCACCACAGACGCC 60.321 55.000 0.00 0.00 43.24 5.68
582 891 4.159506 TCGACATATCATGAAGTCACCACA 59.840 41.667 19.72 0.00 0.00 4.17
593 902 7.522374 TCGAGAGACTAAATCGACATATCATG 58.478 38.462 0.00 0.00 40.29 3.07
605 926 5.843673 TGAGCATCTTCGAGAGACTAAAT 57.156 39.130 0.35 0.00 41.84 1.40
607 928 6.944234 TTATGAGCATCTTCGAGAGACTAA 57.056 37.500 0.35 0.00 41.84 2.24
608 929 6.016693 CCTTTATGAGCATCTTCGAGAGACTA 60.017 42.308 0.35 0.00 41.84 2.59
630 951 2.499685 GCGCGGACATCCTACCTT 59.500 61.111 8.83 0.00 0.00 3.50
631 952 3.900892 CGCGCGGACATCCTACCT 61.901 66.667 24.84 0.00 0.00 3.08
638 959 0.529773 ATGAATACACGCGCGGACAT 60.530 50.000 35.22 23.13 0.00 3.06
640 961 1.558383 GATGAATACACGCGCGGAC 59.442 57.895 35.22 17.36 0.00 4.79
642 963 1.866171 CTCGATGAATACACGCGCGG 61.866 60.000 35.22 24.36 0.00 6.46
643 964 1.478733 CTCGATGAATACACGCGCG 59.521 57.895 30.96 30.96 0.00 6.86
645 966 0.248907 ACCCTCGATGAATACACGCG 60.249 55.000 3.53 3.53 0.00 6.01
658 979 4.363990 AGCGTGCACTCACCCTCG 62.364 66.667 16.19 0.00 40.04 4.63
660 981 4.363990 CGAGCGTGCACTCACCCT 62.364 66.667 16.19 3.01 40.04 4.34
662 983 3.406361 CACGAGCGTGCACTCACC 61.406 66.667 16.19 2.23 40.04 4.02
676 997 1.788621 CGAAGTCGCTCGCATACACG 61.789 60.000 0.00 0.00 31.04 4.49
762 1083 3.930848 CCCGTAGTACCTGATTGTTCAAC 59.069 47.826 0.00 0.00 0.00 3.18
766 1087 1.208776 GGCCCGTAGTACCTGATTGTT 59.791 52.381 0.00 0.00 0.00 2.83
775 1096 0.671472 GTGTTGTGGGCCCGTAGTAC 60.671 60.000 19.37 10.09 0.00 2.73
778 1099 0.820074 TTTGTGTTGTGGGCCCGTAG 60.820 55.000 19.37 0.00 0.00 3.51
785 1106 1.202405 GCCTTCAGTTTGTGTTGTGGG 60.202 52.381 0.00 0.00 0.00 4.61
790 1111 2.024414 GGTGAGCCTTCAGTTTGTGTT 58.976 47.619 0.00 0.00 32.98 3.32
797 1118 3.165160 AACGCGGTGAGCCTTCAGT 62.165 57.895 12.47 0.00 44.76 3.41
806 1127 4.243008 TTCAGGCCAACGCGGTGA 62.243 61.111 28.95 0.73 36.97 4.02
845 1229 9.179909 TGAGTTTATGTCTGGTAAACTTCAAAA 57.820 29.630 11.28 0.00 46.68 2.44
846 1230 8.740123 TGAGTTTATGTCTGGTAAACTTCAAA 57.260 30.769 11.28 0.00 46.68 2.69
855 1239 6.183361 TGTGGACTTTGAGTTTATGTCTGGTA 60.183 38.462 0.00 0.00 0.00 3.25
877 1261 2.749621 GCCTTGTATCCCACTCTTTGTG 59.250 50.000 0.00 0.00 45.80 3.33
879 1263 3.012518 CAGCCTTGTATCCCACTCTTTG 58.987 50.000 0.00 0.00 0.00 2.77
880 1264 2.619074 GCAGCCTTGTATCCCACTCTTT 60.619 50.000 0.00 0.00 0.00 2.52
881 1265 1.065126 GCAGCCTTGTATCCCACTCTT 60.065 52.381 0.00 0.00 0.00 2.85
882 1266 0.543749 GCAGCCTTGTATCCCACTCT 59.456 55.000 0.00 0.00 0.00 3.24
884 1268 0.035056 GTGCAGCCTTGTATCCCACT 60.035 55.000 0.00 0.00 0.00 4.00
885 1269 1.369091 CGTGCAGCCTTGTATCCCAC 61.369 60.000 0.00 0.00 0.00 4.61
886 1270 1.078497 CGTGCAGCCTTGTATCCCA 60.078 57.895 0.00 0.00 0.00 4.37
887 1271 1.819632 CCGTGCAGCCTTGTATCCC 60.820 63.158 0.00 0.00 0.00 3.85
888 1272 1.819632 CCCGTGCAGCCTTGTATCC 60.820 63.158 0.00 0.00 0.00 2.59
889 1273 2.472909 GCCCGTGCAGCCTTGTATC 61.473 63.158 0.00 0.00 37.47 2.24
891 1275 3.636231 AGCCCGTGCAGCCTTGTA 61.636 61.111 0.00 0.00 41.13 2.41
898 1282 4.320456 ACTGTCCAGCCCGTGCAG 62.320 66.667 0.00 0.00 41.13 4.41
899 1283 4.624364 CACTGTCCAGCCCGTGCA 62.624 66.667 0.00 0.00 41.13 4.57
915 1369 1.252215 TGACAGTTCGGCCCGTATCA 61.252 55.000 1.63 0.00 0.00 2.15
931 1385 3.127533 GCGGTGTGATGGGCTGAC 61.128 66.667 0.00 0.00 0.00 3.51
952 1406 2.416432 GCGACTTAGGGCGGAGTCT 61.416 63.158 0.94 0.00 40.03 3.24
1034 1491 1.138671 CGGTTTATGCCGCCAAAGG 59.861 57.895 0.00 0.00 45.47 3.11
1145 1602 2.370519 TGGTTGGTACTTGCTTGCTAGA 59.629 45.455 10.67 0.00 0.00 2.43
1147 1604 2.500229 GTGGTTGGTACTTGCTTGCTA 58.500 47.619 0.00 0.00 0.00 3.49
1148 1605 1.318576 GTGGTTGGTACTTGCTTGCT 58.681 50.000 0.00 0.00 0.00 3.91
1151 1608 0.536460 CCCGTGGTTGGTACTTGCTT 60.536 55.000 0.00 0.00 0.00 3.91
1279 1742 2.504461 CTTGCAGCGCTCAGAAACCG 62.504 60.000 7.13 0.00 0.00 4.44
1294 1757 1.846973 CCCCCTCTATTCCCCTTGC 59.153 63.158 0.00 0.00 0.00 4.01
1327 1790 3.500299 GCTGTATCTAGACATGAGCGAGA 59.500 47.826 0.00 2.64 0.00 4.04
1328 1791 3.251972 TGCTGTATCTAGACATGAGCGAG 59.748 47.826 0.00 0.00 0.00 5.03
1339 1802 8.085296 CCTGTAAAATACTCCTGCTGTATCTAG 58.915 40.741 0.00 0.00 31.08 2.43
1345 1808 3.610911 GCCTGTAAAATACTCCTGCTGT 58.389 45.455 0.00 0.00 0.00 4.40
1349 1812 2.609459 CTGCGCCTGTAAAATACTCCTG 59.391 50.000 4.18 0.00 0.00 3.86
1351 1814 1.940613 CCTGCGCCTGTAAAATACTCC 59.059 52.381 4.18 0.00 0.00 3.85
1356 1819 0.609131 ACAGCCTGCGCCTGTAAAAT 60.609 50.000 14.97 0.00 34.57 1.82
1363 1826 1.746615 CAATGTACAGCCTGCGCCT 60.747 57.895 4.18 0.00 34.57 5.52
1365 1828 0.179189 GAACAATGTACAGCCTGCGC 60.179 55.000 0.00 0.00 0.00 6.09
1405 1878 2.038837 GCCCTTCCTACACGGCAAC 61.039 63.158 0.00 0.00 41.25 4.17
1419 1892 3.255397 AGCAGCAGAACCAGCCCT 61.255 61.111 0.00 0.00 0.00 5.19
1469 1942 1.009389 GCAGACGTTCTCAACCTCCG 61.009 60.000 0.00 0.00 0.00 4.63
1545 2018 2.758736 TGCATTTGTATTGGGCCAAC 57.241 45.000 23.59 11.72 0.00 3.77
1549 2022 3.253230 GACACTTGCATTTGTATTGGGC 58.747 45.455 0.86 0.00 0.00 5.36
1571 2049 9.442033 GTACAAAAACGTAAAAGCAGATTAACT 57.558 29.630 0.00 0.00 0.00 2.24
1586 2064 2.287915 CAGCTGCAGAGTACAAAAACGT 59.712 45.455 20.43 0.00 0.00 3.99
1681 2178 6.550843 TGATGTTACACACAAAGTTCTGTTG 58.449 36.000 0.00 0.00 39.50 3.33
1694 2191 6.649141 GGAAGTTAGTCACATGATGTTACACA 59.351 38.462 11.94 0.00 27.41 3.72
1700 2197 6.859112 AGTAGGAAGTTAGTCACATGATGT 57.141 37.500 0.00 0.00 0.00 3.06
1833 2518 2.355756 CCACACATATACAGGCACTTGC 59.644 50.000 0.00 0.00 34.60 4.01
1837 2522 2.170607 AGGACCACACATATACAGGCAC 59.829 50.000 0.00 0.00 0.00 5.01
1838 2523 2.170397 CAGGACCACACATATACAGGCA 59.830 50.000 0.00 0.00 0.00 4.75
1851 2536 5.245531 TGAAGTGACATTAATCAGGACCAC 58.754 41.667 0.00 0.00 0.00 4.16
1917 2602 7.829725 TGATTGTTTTCCATTCTGAACCATAG 58.170 34.615 0.00 0.00 0.00 2.23
1980 2665 7.049754 GCATTCAGAACAAATATTCCCCAAAT 58.950 34.615 0.00 0.00 0.00 2.32
2009 2703 4.697352 CACTGGGATGGCATAGCTAAATAC 59.303 45.833 0.00 0.00 0.00 1.89
2035 2729 2.455674 TGGATGTTGTTCAGGACTCG 57.544 50.000 0.00 0.00 0.00 4.18
2357 3058 5.415221 GCTCTCTAAACATTAGACTGTGCT 58.585 41.667 0.00 0.00 0.00 4.40
2358 3059 4.568760 GGCTCTCTAAACATTAGACTGTGC 59.431 45.833 0.00 1.78 0.00 4.57
2359 3060 5.724328 TGGCTCTCTAAACATTAGACTGTG 58.276 41.667 0.00 0.00 0.00 3.66
2360 3061 6.382570 AGATGGCTCTCTAAACATTAGACTGT 59.617 38.462 0.00 0.00 0.00 3.55
2361 3062 6.700960 CAGATGGCTCTCTAAACATTAGACTG 59.299 42.308 0.00 0.00 0.00 3.51
2362 3063 6.382570 ACAGATGGCTCTCTAAACATTAGACT 59.617 38.462 0.00 0.00 0.00 3.24
2363 3064 6.578023 ACAGATGGCTCTCTAAACATTAGAC 58.422 40.000 0.00 0.00 0.00 2.59
2364 3065 6.798427 ACAGATGGCTCTCTAAACATTAGA 57.202 37.500 0.37 0.37 0.00 2.10
2365 3066 7.981789 TGTAACAGATGGCTCTCTAAACATTAG 59.018 37.037 0.00 0.00 0.00 1.73
2366 3067 7.847096 TGTAACAGATGGCTCTCTAAACATTA 58.153 34.615 0.00 0.00 0.00 1.90
2367 3068 6.711277 TGTAACAGATGGCTCTCTAAACATT 58.289 36.000 0.00 0.00 0.00 2.71
2368 3069 6.299805 TGTAACAGATGGCTCTCTAAACAT 57.700 37.500 0.00 0.00 0.00 2.71
2369 3070 5.738619 TGTAACAGATGGCTCTCTAAACA 57.261 39.130 0.00 0.00 0.00 2.83
2370 3071 6.036517 CACATGTAACAGATGGCTCTCTAAAC 59.963 42.308 0.00 0.00 0.00 2.01
2371 3072 6.108687 CACATGTAACAGATGGCTCTCTAAA 58.891 40.000 0.00 0.00 0.00 1.85
2372 3073 5.664457 CACATGTAACAGATGGCTCTCTAA 58.336 41.667 0.00 0.00 0.00 2.10
2373 3074 4.442052 GCACATGTAACAGATGGCTCTCTA 60.442 45.833 0.00 0.00 0.00 2.43
2374 3075 3.681034 GCACATGTAACAGATGGCTCTCT 60.681 47.826 0.00 0.00 0.00 3.10
2375 3076 2.611292 GCACATGTAACAGATGGCTCTC 59.389 50.000 0.00 0.00 0.00 3.20
2376 3077 2.238144 AGCACATGTAACAGATGGCTCT 59.762 45.455 0.00 0.00 0.00 4.09
2377 3078 2.636830 AGCACATGTAACAGATGGCTC 58.363 47.619 0.00 0.00 0.00 4.70
2378 3079 2.795231 AGCACATGTAACAGATGGCT 57.205 45.000 0.00 0.00 0.00 4.75
2379 3080 4.963276 TTAAGCACATGTAACAGATGGC 57.037 40.909 0.00 0.00 0.00 4.40
2380 3081 6.460123 GGGAATTAAGCACATGTAACAGATGG 60.460 42.308 0.00 0.00 0.00 3.51
2381 3082 6.095300 TGGGAATTAAGCACATGTAACAGATG 59.905 38.462 0.00 0.00 0.00 2.90
2382 3083 6.095440 GTGGGAATTAAGCACATGTAACAGAT 59.905 38.462 0.00 0.00 0.00 2.90
2383 3084 5.414454 GTGGGAATTAAGCACATGTAACAGA 59.586 40.000 0.00 0.00 0.00 3.41
2384 3085 5.640732 GTGGGAATTAAGCACATGTAACAG 58.359 41.667 0.00 0.00 0.00 3.16
2385 3086 4.155099 CGTGGGAATTAAGCACATGTAACA 59.845 41.667 0.00 0.00 0.00 2.41
2386 3087 4.393680 TCGTGGGAATTAAGCACATGTAAC 59.606 41.667 0.00 0.00 0.00 2.50
2387 3088 4.580868 TCGTGGGAATTAAGCACATGTAA 58.419 39.130 0.00 0.00 0.00 2.41
2388 3089 4.209307 TCGTGGGAATTAAGCACATGTA 57.791 40.909 0.00 0.00 0.00 2.29
2389 3090 3.066291 TCGTGGGAATTAAGCACATGT 57.934 42.857 0.00 0.00 0.00 3.21
2390 3091 3.627123 TGATCGTGGGAATTAAGCACATG 59.373 43.478 0.00 0.00 0.00 3.21
2391 3092 3.879295 CTGATCGTGGGAATTAAGCACAT 59.121 43.478 0.00 0.00 0.00 3.21
2392 3093 3.270027 CTGATCGTGGGAATTAAGCACA 58.730 45.455 0.00 0.00 0.00 4.57
2393 3094 2.032178 GCTGATCGTGGGAATTAAGCAC 59.968 50.000 0.00 0.00 0.00 4.40
2394 3095 2.288666 GCTGATCGTGGGAATTAAGCA 58.711 47.619 0.00 0.00 0.00 3.91
2395 3096 2.032178 GTGCTGATCGTGGGAATTAAGC 59.968 50.000 0.00 0.00 0.00 3.09
2396 3097 3.270027 TGTGCTGATCGTGGGAATTAAG 58.730 45.455 0.00 0.00 0.00 1.85
2397 3098 3.342377 TGTGCTGATCGTGGGAATTAA 57.658 42.857 0.00 0.00 0.00 1.40
2398 3099 3.118445 TGATGTGCTGATCGTGGGAATTA 60.118 43.478 0.00 0.00 0.00 1.40
2399 3100 2.292267 GATGTGCTGATCGTGGGAATT 58.708 47.619 0.00 0.00 0.00 2.17
2400 3101 1.210234 TGATGTGCTGATCGTGGGAAT 59.790 47.619 0.00 0.00 0.00 3.01
2401 3102 0.612744 TGATGTGCTGATCGTGGGAA 59.387 50.000 0.00 0.00 0.00 3.97
2402 3103 0.108186 GTGATGTGCTGATCGTGGGA 60.108 55.000 0.00 0.00 0.00 4.37
2403 3104 0.391528 TGTGATGTGCTGATCGTGGG 60.392 55.000 0.00 0.00 0.00 4.61
2404 3105 0.723414 GTGTGATGTGCTGATCGTGG 59.277 55.000 0.00 0.00 0.00 4.94
2405 3106 0.367887 CGTGTGATGTGCTGATCGTG 59.632 55.000 0.00 0.00 0.00 4.35
2406 3107 0.038251 ACGTGTGATGTGCTGATCGT 60.038 50.000 0.00 0.00 0.00 3.73
2407 3108 0.367887 CACGTGTGATGTGCTGATCG 59.632 55.000 7.58 0.00 0.00 3.69
2408 3109 1.432514 ACACGTGTGATGTGCTGATC 58.567 50.000 22.71 0.00 38.65 2.92
2409 3110 1.882912 AACACGTGTGATGTGCTGAT 58.117 45.000 24.16 0.00 38.65 2.90
2410 3111 1.662517 AAACACGTGTGATGTGCTGA 58.337 45.000 24.16 0.00 38.65 4.26
2411 3112 2.110990 CAAAACACGTGTGATGTGCTG 58.889 47.619 24.16 8.06 38.65 4.41
2424 3125 5.506686 AAAAGAAGAGGAGCTCAAAACAC 57.493 39.130 17.19 2.14 32.06 3.32
2563 3267 5.123227 TGTCAAACTAACAACAGAGGGAAG 58.877 41.667 0.00 0.00 0.00 3.46
2657 3361 4.546224 AAAAACAAGGGGGAGGAACTAA 57.454 40.909 0.00 0.00 41.55 2.24
2707 3412 6.128227 GCCACATTGCACAAATCAACAATTAT 60.128 34.615 0.00 0.00 30.54 1.28
2708 3413 5.178996 GCCACATTGCACAAATCAACAATTA 59.821 36.000 0.00 0.00 30.54 1.40
2709 3414 4.023878 GCCACATTGCACAAATCAACAATT 60.024 37.500 0.00 0.00 30.54 2.32
2719 3424 0.829333 AACAAGGCCACATTGCACAA 59.171 45.000 5.01 0.00 0.00 3.33
2862 3567 3.650139 GGTGATTAGACACAGACGTTGT 58.350 45.455 0.00 0.00 41.88 3.32
2910 3615 1.856920 TCTTCTTTTGTCCCTTGGGGT 59.143 47.619 5.78 0.00 44.74 4.95
2931 3636 1.278985 TCTGCAATAGTGTCCACCTGG 59.721 52.381 0.00 0.00 0.00 4.45
3498 4203 5.655532 CCTTGATTCTTTGATCTGGTGGAAT 59.344 40.000 0.00 0.00 0.00 3.01
4000 4706 5.036737 CCTGAAAACCGCATCAATTATGTC 58.963 41.667 0.00 0.00 37.93 3.06
4120 4828 8.744652 GCTTCTAGCAAATCTCTCCTATATACA 58.255 37.037 0.00 0.00 41.89 2.29
4273 4990 9.321562 GGCATCATGAAACTTGAAATAATCATT 57.678 29.630 0.00 0.00 38.03 2.57
4317 5034 4.525686 CAAAATGGATTTGTTGGTTTGCG 58.474 39.130 0.00 0.00 42.84 4.85
4976 5693 3.254892 GGGCGCAATTATACTAGCTCTC 58.745 50.000 10.83 0.00 0.00 3.20
5570 6324 7.261325 GTGCAAGATCTAACATCTTCACTAGA 58.739 38.462 0.00 0.00 36.32 2.43
5588 6342 1.455849 CCTTCCAGGTGGTGCAAGA 59.544 57.895 0.00 0.00 36.34 3.02
5851 6619 6.909550 TTGTGCCCAAAGTTCTAATATTGT 57.090 33.333 0.00 0.00 0.00 2.71
5936 6704 9.880157 GGAGTACTTGTTACAGGTTATTTGATA 57.120 33.333 5.26 0.00 32.41 2.15
5959 6727 2.085320 CGGAGGGAGTATGATACGGAG 58.915 57.143 0.00 0.00 0.00 4.63
5960 6728 1.701292 TCGGAGGGAGTATGATACGGA 59.299 52.381 0.00 0.00 0.00 4.69
5961 6729 2.195741 TCGGAGGGAGTATGATACGG 57.804 55.000 0.00 0.00 0.00 4.02
5962 6730 2.683867 GGATCGGAGGGAGTATGATACG 59.316 54.545 0.00 0.00 0.00 3.06
5963 6731 3.698289 TGGATCGGAGGGAGTATGATAC 58.302 50.000 0.00 0.00 0.00 2.24
5967 6735 3.838244 TTTTGGATCGGAGGGAGTATG 57.162 47.619 0.00 0.00 0.00 2.39
6047 6833 5.418524 TTGGGTGACAAATGATATGGAACAG 59.581 40.000 0.00 0.00 37.86 3.16
6092 6878 4.270084 TGCCTAAAGTTCGAATATTGCTCG 59.730 41.667 0.00 0.00 37.66 5.03
6277 7063 4.942761 AGAAGCAAATGAGAAGGCAAAA 57.057 36.364 0.00 0.00 0.00 2.44
6487 7273 7.463961 TTGCCTAAATTTTGGATTAACGGTA 57.536 32.000 20.95 0.00 0.00 4.02
6518 7304 0.473694 TGGGGTTCTCCTTCAGCTCA 60.474 55.000 0.00 0.00 35.33 4.26
6617 7403 0.606401 CCGGGCTTTCTTTCTCTGCA 60.606 55.000 0.00 0.00 0.00 4.41
6961 7747 1.202290 CCGCAGAGCAACAAAACACTT 60.202 47.619 0.00 0.00 0.00 3.16
7081 7892 6.686630 TGACCAGGCATGTTTAAATTAACTG 58.313 36.000 0.00 0.00 0.00 3.16
7114 7925 7.500559 GGCTCCTAAGAACAAATGACAGATTAT 59.499 37.037 0.00 0.00 0.00 1.28
7165 7976 6.534793 CCTTCTTCAGTCTCTCATAAAGCTTC 59.465 42.308 0.00 0.00 0.00 3.86
7404 8215 6.472887 ACTCAGAGGATATTTCGGTTTTCAA 58.527 36.000 1.53 0.00 0.00 2.69
7574 8386 8.914011 TCTAAAACAGTAGCTTAGATGATAGCA 58.086 33.333 0.00 0.00 39.85 3.49
7704 8519 5.216665 TGGTATTTAGGACAGGTACCTCT 57.783 43.478 12.84 9.24 38.76 3.69
7735 8550 2.494471 CTGAAATTTGATCCTGGCAGCA 59.506 45.455 9.56 0.00 0.00 4.41
7883 8702 6.884280 AGTCACGACTCATGTGATCATATA 57.116 37.500 4.46 0.00 46.98 0.86
7902 8721 4.682787 CTTAGATGATGGCGTGTTAGTCA 58.317 43.478 0.00 0.00 0.00 3.41
7906 8725 3.118775 AGTGCTTAGATGATGGCGTGTTA 60.119 43.478 0.00 0.00 0.00 2.41
7950 8769 5.652518 TCACGACGGTCATGAATTTACATA 58.347 37.500 4.17 0.00 0.00 2.29
8011 8830 6.174720 TCCTACAAATTAGAATGCCGAGAT 57.825 37.500 0.00 0.00 0.00 2.75
8012 8831 5.128827 ACTCCTACAAATTAGAATGCCGAGA 59.871 40.000 0.00 0.00 0.00 4.04
8013 8832 5.360591 ACTCCTACAAATTAGAATGCCGAG 58.639 41.667 0.00 0.00 0.00 4.63
8014 8833 5.353394 ACTCCTACAAATTAGAATGCCGA 57.647 39.130 0.00 0.00 0.00 5.54
8015 8834 7.730364 ATTACTCCTACAAATTAGAATGCCG 57.270 36.000 0.00 0.00 0.00 5.69
8016 8835 8.568794 GGAATTACTCCTACAAATTAGAATGCC 58.431 37.037 0.00 0.00 41.61 4.40
8017 8836 8.568794 GGGAATTACTCCTACAAATTAGAATGC 58.431 37.037 0.00 0.00 44.68 3.56
8018 8837 9.627123 TGGGAATTACTCCTACAAATTAGAATG 57.373 33.333 0.00 0.00 44.68 2.67
8020 8839 9.681062 CTTGGGAATTACTCCTACAAATTAGAA 57.319 33.333 0.00 0.00 44.68 2.10
8021 8840 9.053472 TCTTGGGAATTACTCCTACAAATTAGA 57.947 33.333 0.00 0.00 44.68 2.10
8022 8841 9.110502 GTCTTGGGAATTACTCCTACAAATTAG 57.889 37.037 0.00 0.00 44.68 1.73
8023 8842 8.607713 TGTCTTGGGAATTACTCCTACAAATTA 58.392 33.333 0.00 0.00 44.68 1.40
8024 8843 7.393515 GTGTCTTGGGAATTACTCCTACAAATT 59.606 37.037 0.00 0.00 44.68 1.82
8025 8844 6.884836 GTGTCTTGGGAATTACTCCTACAAAT 59.115 38.462 0.00 0.00 44.68 2.32
8026 8845 6.183361 TGTGTCTTGGGAATTACTCCTACAAA 60.183 38.462 0.00 0.00 44.68 2.83
8027 8846 5.308497 TGTGTCTTGGGAATTACTCCTACAA 59.692 40.000 0.00 0.00 44.68 2.41
8028 8847 4.841813 TGTGTCTTGGGAATTACTCCTACA 59.158 41.667 0.00 0.00 44.68 2.74
8029 8848 5.416271 TGTGTCTTGGGAATTACTCCTAC 57.584 43.478 0.00 0.00 44.68 3.18
8030 8849 5.964477 AGATGTGTCTTGGGAATTACTCCTA 59.036 40.000 0.00 0.00 44.68 2.94
8031 8850 4.785376 AGATGTGTCTTGGGAATTACTCCT 59.215 41.667 0.00 0.00 44.68 3.69
8032 8851 5.104259 AGATGTGTCTTGGGAATTACTCC 57.896 43.478 0.00 0.00 44.54 3.85
8033 8852 5.734720 TGAGATGTGTCTTGGGAATTACTC 58.265 41.667 0.00 0.00 33.97 2.59
8034 8853 5.738909 CTGAGATGTGTCTTGGGAATTACT 58.261 41.667 0.00 0.00 33.97 2.24
8035 8854 4.333926 GCTGAGATGTGTCTTGGGAATTAC 59.666 45.833 0.00 0.00 33.97 1.89
8036 8855 4.019411 TGCTGAGATGTGTCTTGGGAATTA 60.019 41.667 0.00 0.00 33.97 1.40
8037 8856 3.245016 TGCTGAGATGTGTCTTGGGAATT 60.245 43.478 0.00 0.00 33.97 2.17
8038 8857 2.306805 TGCTGAGATGTGTCTTGGGAAT 59.693 45.455 0.00 0.00 33.97 3.01
8039 8858 1.699083 TGCTGAGATGTGTCTTGGGAA 59.301 47.619 0.00 0.00 33.97 3.97
8040 8859 1.351076 TGCTGAGATGTGTCTTGGGA 58.649 50.000 0.00 0.00 33.97 4.37
8041 8860 2.414994 ATGCTGAGATGTGTCTTGGG 57.585 50.000 0.00 0.00 33.97 4.12
8042 8861 3.607741 AGAATGCTGAGATGTGTCTTGG 58.392 45.455 0.00 0.00 33.97 3.61
8043 8862 6.922247 AATAGAATGCTGAGATGTGTCTTG 57.078 37.500 0.00 0.00 33.97 3.02
8044 8863 7.828223 AGAAAATAGAATGCTGAGATGTGTCTT 59.172 33.333 0.00 0.00 33.97 3.01
8045 8864 7.337167 AGAAAATAGAATGCTGAGATGTGTCT 58.663 34.615 0.00 0.00 37.42 3.41
8046 8865 7.551035 AGAAAATAGAATGCTGAGATGTGTC 57.449 36.000 0.00 0.00 0.00 3.67
8047 8866 7.934855 AAGAAAATAGAATGCTGAGATGTGT 57.065 32.000 0.00 0.00 0.00 3.72
8068 8887 7.093333 TGCTGAGATGTTTACTCCAAGATAAGA 60.093 37.037 0.00 0.00 33.95 2.10
8069 8888 7.044181 TGCTGAGATGTTTACTCCAAGATAAG 58.956 38.462 0.00 0.00 33.95 1.73
8071 8890 6.544928 TGCTGAGATGTTTACTCCAAGATA 57.455 37.500 0.00 0.00 33.95 1.98
8072 8891 5.426689 TGCTGAGATGTTTACTCCAAGAT 57.573 39.130 0.00 0.00 33.95 2.40
8073 8892 4.890158 TGCTGAGATGTTTACTCCAAGA 57.110 40.909 0.00 0.00 33.95 3.02
8074 8893 5.879223 AGAATGCTGAGATGTTTACTCCAAG 59.121 40.000 0.00 0.00 33.95 3.61
8075 8894 5.809001 AGAATGCTGAGATGTTTACTCCAA 58.191 37.500 0.00 0.00 33.95 3.53
8076 8895 5.426689 AGAATGCTGAGATGTTTACTCCA 57.573 39.130 0.00 0.00 33.95 3.86
8077 8896 8.443953 AAATAGAATGCTGAGATGTTTACTCC 57.556 34.615 0.00 0.00 33.95 3.85
8078 8897 9.928236 GAAAATAGAATGCTGAGATGTTTACTC 57.072 33.333 0.00 0.00 35.26 2.59
8079 8898 9.678260 AGAAAATAGAATGCTGAGATGTTTACT 57.322 29.630 0.00 0.00 0.00 2.24
8087 8906 9.979578 GAGAGATAAGAAAATAGAATGCTGAGA 57.020 33.333 0.00 0.00 0.00 3.27
8088 8907 9.985730 AGAGAGATAAGAAAATAGAATGCTGAG 57.014 33.333 0.00 0.00 0.00 3.35
8106 8925 9.062524 GCTGAGATGTTTACTCTAAGAGAGATA 57.937 37.037 11.37 0.00 45.07 1.98
8107 8926 7.559533 TGCTGAGATGTTTACTCTAAGAGAGAT 59.440 37.037 11.37 0.00 45.07 2.75
8108 8927 6.887002 TGCTGAGATGTTTACTCTAAGAGAGA 59.113 38.462 11.37 0.00 45.07 3.10
8110 8929 6.661377 ACTGCTGAGATGTTTACTCTAAGAGA 59.339 38.462 0.00 0.00 35.66 3.10
8111 8930 6.751425 CACTGCTGAGATGTTTACTCTAAGAG 59.249 42.308 0.00 0.00 35.66 2.85
8138 8957 0.034756 TGTCCCCATTGTGTCACTCG 59.965 55.000 4.27 0.00 0.00 4.18
8148 8967 4.518278 TGCTGTTATATGTGTCCCCATT 57.482 40.909 0.00 0.00 0.00 3.16
8150 8969 4.165950 AGATTGCTGTTATATGTGTCCCCA 59.834 41.667 0.00 0.00 0.00 4.96
8151 8970 4.718961 AGATTGCTGTTATATGTGTCCCC 58.281 43.478 0.00 0.00 0.00 4.81
8152 8971 6.498304 CAAAGATTGCTGTTATATGTGTCCC 58.502 40.000 0.00 0.00 0.00 4.46
8209 9028 7.108194 TGCTATGCTATCCCAGATTGAATAAG 58.892 38.462 0.00 0.00 0.00 1.73
8210 9029 7.019656 TGCTATGCTATCCCAGATTGAATAA 57.980 36.000 0.00 0.00 0.00 1.40
8211 9030 6.625532 TGCTATGCTATCCCAGATTGAATA 57.374 37.500 0.00 0.00 0.00 1.75
8212 9031 5.509832 TGCTATGCTATCCCAGATTGAAT 57.490 39.130 0.00 0.00 0.00 2.57
8260 9079 1.574263 AGTTAGCCAGGAAGAGGGTC 58.426 55.000 0.00 0.00 38.04 4.46
8333 9152 1.000171 GCTTTTTGGGTGCTCTCCTTG 60.000 52.381 0.00 0.00 0.00 3.61
8334 9153 1.133356 AGCTTTTTGGGTGCTCTCCTT 60.133 47.619 0.00 0.00 30.41 3.36
8335 9154 0.480252 AGCTTTTTGGGTGCTCTCCT 59.520 50.000 0.00 0.00 30.41 3.69
8336 9155 2.200373 TAGCTTTTTGGGTGCTCTCC 57.800 50.000 0.00 0.00 38.15 3.71
8337 9156 3.758554 TGAATAGCTTTTTGGGTGCTCTC 59.241 43.478 0.00 0.00 38.15 3.20
8338 9157 3.760684 CTGAATAGCTTTTTGGGTGCTCT 59.239 43.478 0.00 0.00 38.15 4.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.