Multiple sequence alignment - TraesCS4A01G318700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G318700 chr4A 100.000 1735 0 0 715 2449 607417024 607418758 0.000000e+00 3205
1 TraesCS4A01G318700 chr4A 100.000 340 0 0 1 340 607416310 607416649 1.600000e-176 628
2 TraesCS4A01G318700 chr4A 90.214 327 30 1 1838 2162 455828962 455829288 2.250000e-115 425
3 TraesCS4A01G318700 chr4A 89.123 285 25 4 1557 1841 697827477 697827755 1.390000e-92 350
4 TraesCS4A01G318700 chr5B 86.438 730 44 25 751 1457 707187682 707186985 0.000000e+00 749
5 TraesCS4A01G318700 chr5B 89.538 325 32 1 1840 2162 2002614 2002290 6.300000e-111 411
6 TraesCS4A01G318700 chr5B 90.722 97 9 0 1446 1542 707180782 707180686 1.980000e-26 130
7 TraesCS4A01G318700 chr5A 91.607 417 30 5 1557 1971 548665661 548666074 2.730000e-159 571
8 TraesCS4A01G318700 chr5A 90.462 325 29 1 1840 2162 292856 292532 6.260000e-116 427
9 TraesCS4A01G318700 chr5A 89.437 284 24 4 1557 1839 555209831 555209553 1.080000e-93 353
10 TraesCS4A01G318700 chr5D 90.000 450 23 3 1109 1543 565900190 565900632 1.640000e-156 562
11 TraesCS4A01G318700 chr5D 90.230 348 21 9 1 340 565899457 565899799 2.230000e-120 442
12 TraesCS4A01G318700 chr5D 89.877 326 30 2 1840 2163 368532 368856 1.350000e-112 416
13 TraesCS4A01G318700 chr5D 91.837 245 10 1 718 952 565899842 565900086 1.400000e-87 333
14 TraesCS4A01G318700 chr6D 82.229 619 95 10 1558 2162 331052626 331052009 1.000000e-143 520
15 TraesCS4A01G318700 chr7D 91.385 325 26 1 1840 2162 365278235 365278559 6.210000e-121 444
16 TraesCS4A01G318700 chr7D 92.281 285 20 1 1557 1841 597409685 597409967 1.050000e-108 403
17 TraesCS4A01G318700 chr7D 91.228 285 23 2 1557 1841 15262091 15261809 1.060000e-103 387
18 TraesCS4A01G318700 chr7D 88.421 285 31 2 1558 1841 245380009 245379726 2.330000e-90 342
19 TraesCS4A01G318700 chr7D 88.070 285 32 2 1557 1841 365277895 365278177 1.080000e-88 337
20 TraesCS4A01G318700 chr7D 82.540 126 17 4 2158 2282 624130752 624130873 3.330000e-19 106
21 TraesCS4A01G318700 chr7D 82.540 126 17 4 2158 2282 624141056 624141177 3.330000e-19 106
22 TraesCS4A01G318700 chr7A 90.826 327 28 1 1838 2162 151003275 151003601 1.040000e-118 436
23 TraesCS4A01G318700 chr7A 85.000 120 16 1 2159 2278 684254094 684254211 1.190000e-23 121
24 TraesCS4A01G318700 chr7A 85.000 120 15 2 2167 2285 62024499 62024616 4.280000e-23 119
25 TraesCS4A01G318700 chr7A 84.746 118 16 1 2162 2279 28004752 28004867 1.540000e-22 117
26 TraesCS4A01G318700 chr4D 89.602 327 28 3 1838 2162 118238772 118239094 6.300000e-111 411
27 TraesCS4A01G318700 chr2A 88.379 327 36 1 1838 2162 532482566 532482892 2.280000e-105 392
28 TraesCS4A01G318700 chr4B 88.421 285 28 2 1557 1841 18508200 18507921 3.020000e-89 339
29 TraesCS4A01G318700 chr6A 90.860 186 11 3 2169 2354 20344643 20344464 6.760000e-61 244
30 TraesCS4A01G318700 chr1D 85.246 122 13 4 2160 2279 232082843 232082961 1.190000e-23 121
31 TraesCS4A01G318700 chr3A 85.714 112 14 1 2162 2273 731109679 731109570 1.540000e-22 117
32 TraesCS4A01G318700 chr3D 83.761 117 17 1 2162 2278 582710284 582710170 2.570000e-20 110


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G318700 chr4A 607416310 607418758 2448 False 1916.500000 3205 100.0000 1 2449 2 chr4A.!!$F3 2448
1 TraesCS4A01G318700 chr5B 707186985 707187682 697 True 749.000000 749 86.4380 751 1457 1 chr5B.!!$R3 706
2 TraesCS4A01G318700 chr5D 565899457 565900632 1175 False 445.666667 562 90.6890 1 1543 3 chr5D.!!$F2 1542
3 TraesCS4A01G318700 chr6D 331052009 331052626 617 True 520.000000 520 82.2290 1558 2162 1 chr6D.!!$R1 604
4 TraesCS4A01G318700 chr7D 365277895 365278559 664 False 390.500000 444 89.7275 1557 2162 2 chr7D.!!$F4 605

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
947 966 1.242076 GTGCTCATTGCCTCACACTT 58.758 50.0 0.0 0.0 42.0 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2427 2568 0.035056 AGCGGGCATAAGCTCTTTGT 60.035 50.0 0.0 0.0 39.98 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 68 6.037786 ACAATTACAAGCACTAGAGCACTA 57.962 37.500 14.80 0.00 36.85 2.74
60 69 6.644347 ACAATTACAAGCACTAGAGCACTAT 58.356 36.000 14.80 0.00 36.85 2.12
62 71 2.898705 ACAAGCACTAGAGCACTATGC 58.101 47.619 14.80 13.58 45.46 3.14
66 75 2.437281 AGCACTAGAGCACTATGCCATT 59.563 45.455 14.80 2.95 46.52 3.16
71 80 6.404708 CACTAGAGCACTATGCCATTATCAT 58.595 40.000 0.00 0.00 46.52 2.45
74 83 3.944015 GAGCACTATGCCATTATCATCCC 59.056 47.826 0.00 0.00 46.52 3.85
75 84 3.590630 AGCACTATGCCATTATCATCCCT 59.409 43.478 0.00 0.00 46.52 4.20
76 85 3.944015 GCACTATGCCATTATCATCCCTC 59.056 47.826 0.00 0.00 37.42 4.30
77 86 4.324099 GCACTATGCCATTATCATCCCTCT 60.324 45.833 0.00 0.00 37.42 3.69
83 92 2.093764 CCATTATCATCCCTCTCTCGCC 60.094 54.545 0.00 0.00 0.00 5.54
97 106 3.124921 CGCCGGAGCCGAACAAAT 61.125 61.111 5.05 0.00 42.83 2.32
131 140 3.501062 ACACAGTCGAGAAAGTCATCGTA 59.499 43.478 0.00 0.00 39.86 3.43
137 146 5.064962 AGTCGAGAAAGTCATCGTACTAAGG 59.935 44.000 0.00 0.00 39.86 2.69
147 156 2.966915 TCGTACTAAGGCCCCACATAT 58.033 47.619 0.00 0.00 0.00 1.78
165 174 4.808895 ACATATTCAGCGCACGAGATTTAA 59.191 37.500 11.47 0.00 0.00 1.52
169 178 5.788055 TTCAGCGCACGAGATTTAATTTA 57.212 34.783 11.47 0.00 0.00 1.40
177 186 7.167468 GCGCACGAGATTTAATTTAATCCATTT 59.833 33.333 12.38 0.00 35.56 2.32
194 203 6.925610 TCCATTTGTCTATGTGTATTGAGC 57.074 37.500 0.00 0.00 0.00 4.26
200 209 4.045104 GTCTATGTGTATTGAGCACCTCG 58.955 47.826 0.00 0.00 36.11 4.63
214 223 2.628696 CCTCGTTTGCATGCAGGCA 61.629 57.895 24.07 24.07 43.19 4.75
241 250 2.387445 TGTGTTATGCAGACGCCGC 61.387 57.895 12.37 0.00 37.32 6.53
260 269 2.706890 GCCCTAATTGAGAACGACCAA 58.293 47.619 0.00 0.00 0.00 3.67
766 775 7.821359 TCTGAGAAACAAGGAAGATTCACATAG 59.179 37.037 0.00 0.00 0.00 2.23
947 966 1.242076 GTGCTCATTGCCTCACACTT 58.758 50.000 0.00 0.00 42.00 3.16
948 967 1.610522 GTGCTCATTGCCTCACACTTT 59.389 47.619 0.00 0.00 42.00 2.66
949 968 1.881973 TGCTCATTGCCTCACACTTTC 59.118 47.619 0.00 0.00 42.00 2.62
950 969 1.881973 GCTCATTGCCTCACACTTTCA 59.118 47.619 0.00 0.00 35.15 2.69
951 970 2.490903 GCTCATTGCCTCACACTTTCAT 59.509 45.455 0.00 0.00 35.15 2.57
952 971 3.057033 GCTCATTGCCTCACACTTTCATT 60.057 43.478 0.00 0.00 35.15 2.57
953 972 4.560108 GCTCATTGCCTCACACTTTCATTT 60.560 41.667 0.00 0.00 35.15 2.32
954 973 5.335897 GCTCATTGCCTCACACTTTCATTTA 60.336 40.000 0.00 0.00 35.15 1.40
955 974 6.647334 TCATTGCCTCACACTTTCATTTAA 57.353 33.333 0.00 0.00 0.00 1.52
956 975 6.446318 TCATTGCCTCACACTTTCATTTAAC 58.554 36.000 0.00 0.00 0.00 2.01
957 976 6.265196 TCATTGCCTCACACTTTCATTTAACT 59.735 34.615 0.00 0.00 0.00 2.24
958 977 5.689383 TGCCTCACACTTTCATTTAACTC 57.311 39.130 0.00 0.00 0.00 3.01
959 978 5.376625 TGCCTCACACTTTCATTTAACTCT 58.623 37.500 0.00 0.00 0.00 3.24
960 979 5.470098 TGCCTCACACTTTCATTTAACTCTC 59.530 40.000 0.00 0.00 0.00 3.20
961 980 5.470098 GCCTCACACTTTCATTTAACTCTCA 59.530 40.000 0.00 0.00 0.00 3.27
962 981 6.150140 GCCTCACACTTTCATTTAACTCTCAT 59.850 38.462 0.00 0.00 0.00 2.90
963 982 7.334421 GCCTCACACTTTCATTTAACTCTCATA 59.666 37.037 0.00 0.00 0.00 2.15
964 983 9.388506 CCTCACACTTTCATTTAACTCTCATAT 57.611 33.333 0.00 0.00 0.00 1.78
1012 1031 1.876156 GCTCAAATATGAAGGGGAGCG 59.124 52.381 0.00 0.00 38.44 5.03
1018 1037 1.983119 TATGAAGGGGAGCGGCTTGG 61.983 60.000 2.97 0.00 0.00 3.61
1024 1043 2.281484 GGAGCGGCTTGGTGTTCA 60.281 61.111 2.97 0.00 0.00 3.18
1050 1069 2.973945 ACTCTTTTGTCCATCGGCTAC 58.026 47.619 0.00 0.00 0.00 3.58
1058 1077 1.221840 CCATCGGCTACCTTGCAGT 59.778 57.895 0.00 0.00 34.04 4.40
1142 1200 2.202899 GGTTTTCCCCAGCCCCAA 59.797 61.111 0.00 0.00 0.00 4.12
1144 1202 1.552799 GGTTTTCCCCAGCCCCAATG 61.553 60.000 0.00 0.00 0.00 2.82
1159 1217 3.181482 CCCCAATGTATATTTGCGCACAA 60.181 43.478 11.12 8.67 0.00 3.33
1163 1221 6.867816 CCCAATGTATATTTGCGCACAATTAT 59.132 34.615 11.12 7.67 36.67 1.28
1179 1237 6.038161 GCACAATTATACATCAGGTTGCACTA 59.962 38.462 0.00 0.00 0.00 2.74
1188 1246 3.865700 GGTTGCACTAACAAGCACC 57.134 52.632 1.88 0.00 45.20 5.01
1191 1249 3.081804 GGTTGCACTAACAAGCACCTAT 58.918 45.455 1.88 0.00 45.20 2.57
1244 1317 1.078143 GGATGAAAGGAGCGCCAGT 60.078 57.895 9.88 0.00 36.29 4.00
1279 1352 3.119291 CTCCTGCATTACACTCGTCATC 58.881 50.000 0.00 0.00 0.00 2.92
1293 1366 1.859703 CGTCATCAGATGAGAGCAAGC 59.140 52.381 13.78 0.00 40.53 4.01
1482 1555 4.671569 GGCCGGCGCTGGATCTAG 62.672 72.222 39.24 11.74 34.44 2.43
1483 1556 3.606662 GCCGGCGCTGGATCTAGA 61.607 66.667 39.24 0.00 0.00 2.43
1484 1557 3.129300 CCGGCGCTGGATCTAGAA 58.871 61.111 32.31 0.00 0.00 2.10
1492 1565 2.300152 CGCTGGATCTAGAATTGCCCTA 59.700 50.000 10.75 0.00 0.00 3.53
1539 1612 8.625651 TGTTTAACTGCTGTTTTGCTAGAATTA 58.374 29.630 14.54 0.00 37.59 1.40
1543 1616 7.277174 ACTGCTGTTTTGCTAGAATTAGTTT 57.723 32.000 0.00 0.00 0.00 2.66
1544 1617 7.363431 ACTGCTGTTTTGCTAGAATTAGTTTC 58.637 34.615 0.00 0.00 34.31 2.78
1545 1618 7.229506 ACTGCTGTTTTGCTAGAATTAGTTTCT 59.770 33.333 0.00 0.00 46.53 2.52
1546 1619 7.940850 TGCTGTTTTGCTAGAATTAGTTTCTT 58.059 30.769 0.00 0.00 42.15 2.52
1547 1620 8.413229 TGCTGTTTTGCTAGAATTAGTTTCTTT 58.587 29.630 0.00 0.00 42.15 2.52
1548 1621 9.249457 GCTGTTTTGCTAGAATTAGTTTCTTTT 57.751 29.630 0.00 0.00 42.15 2.27
1561 1634 3.118038 AGTTTCTTTTTGGAAAAGCCCCC 60.118 43.478 8.00 0.00 37.02 5.40
1604 1677 5.593968 TGCATGCAGCCATCTTATTAAAAG 58.406 37.500 18.46 0.00 44.83 2.27
1610 1683 5.590259 GCAGCCATCTTATTAAAAGGTCTCA 59.410 40.000 0.00 0.00 0.00 3.27
1694 1774 3.809832 GGTGTATGCTCAATATCGCAACT 59.190 43.478 0.00 0.00 39.89 3.16
1715 1795 5.175859 ACTGGTATGACAATGTAAAGGACG 58.824 41.667 0.00 0.00 0.00 4.79
1716 1796 4.509616 TGGTATGACAATGTAAAGGACGG 58.490 43.478 0.00 0.00 0.00 4.79
1735 1815 2.489255 CGGGCTTCCTAGACTCCTATCA 60.489 54.545 0.00 0.00 0.00 2.15
1746 1826 5.991933 AGACTCCTATCATGTTATGCGAT 57.008 39.130 0.00 0.00 0.00 4.58
1771 1851 4.382291 CCATCCGAACCGGTTGAATATAA 58.618 43.478 27.87 3.01 46.01 0.98
1816 1896 1.532604 GCACCCAGTAACCAAAGGCC 61.533 60.000 0.00 0.00 0.00 5.19
1817 1897 0.112412 CACCCAGTAACCAAAGGCCT 59.888 55.000 0.00 0.00 0.00 5.19
1821 1901 1.913419 CCAGTAACCAAAGGCCTCCTA 59.087 52.381 5.23 0.00 31.13 2.94
1831 1911 3.708236 AAGGCCTCCTAGAGTCCATAA 57.292 47.619 5.23 0.00 28.99 1.90
1904 2043 4.335416 AGCCCATATAAGCGCACATATTT 58.665 39.130 11.47 0.00 0.00 1.40
1935 2074 5.667539 ATATGAGCCGCAGTAGTATGATT 57.332 39.130 0.00 0.00 0.00 2.57
1941 2080 3.493699 GCCGCAGTAGTATGATTAACCCA 60.494 47.826 0.00 0.00 0.00 4.51
1964 2103 4.354893 ACTAACCACGTCCCAAATAACA 57.645 40.909 0.00 0.00 0.00 2.41
1977 2116 9.364989 CGTCCCAAATAACAATTCAATGTTAAT 57.635 29.630 4.23 0.00 45.85 1.40
2026 2165 5.841810 TGGATCGTTCTTCAAAGCAATTTT 58.158 33.333 0.00 0.00 0.00 1.82
2028 2167 5.691754 GGATCGTTCTTCAAAGCAATTTTGT 59.308 36.000 0.22 0.00 45.17 2.83
2066 2207 5.257082 ACAAGTGTTGTATTGTTTCACCC 57.743 39.130 0.00 0.00 43.27 4.61
2087 2228 3.796178 CCTGATCACAAAAACAACAACGG 59.204 43.478 0.00 0.00 0.00 4.44
2088 2229 4.439426 CCTGATCACAAAAACAACAACGGA 60.439 41.667 0.00 0.00 0.00 4.69
2151 2292 3.067106 AGAATCACTTGCTTGTGTACGG 58.933 45.455 8.92 0.00 38.90 4.02
2153 2294 2.831685 TCACTTGCTTGTGTACGGAT 57.168 45.000 8.92 0.00 38.90 4.18
2162 2303 5.182487 TGCTTGTGTACGGATCACATAAAT 58.818 37.500 9.58 0.00 43.74 1.40
2163 2304 5.293324 TGCTTGTGTACGGATCACATAAATC 59.707 40.000 9.58 0.00 43.74 2.17
2164 2305 5.523916 GCTTGTGTACGGATCACATAAATCT 59.476 40.000 9.58 0.00 43.74 2.40
2165 2306 6.700081 GCTTGTGTACGGATCACATAAATCTA 59.300 38.462 9.58 0.00 43.74 1.98
2166 2307 7.385205 GCTTGTGTACGGATCACATAAATCTAT 59.615 37.037 9.58 0.00 43.74 1.98
2167 2308 9.908152 CTTGTGTACGGATCACATAAATCTATA 57.092 33.333 9.58 0.00 43.74 1.31
2206 2347 9.620259 ATTAAAGGATGGAGACTTTCATAGTTC 57.380 33.333 0.00 0.00 37.17 3.01
2207 2348 6.882768 AAGGATGGAGACTTTCATAGTTCT 57.117 37.500 0.00 0.00 37.17 3.01
2208 2349 6.882768 AGGATGGAGACTTTCATAGTTCTT 57.117 37.500 0.00 0.00 37.17 2.52
2209 2350 6.883744 AGGATGGAGACTTTCATAGTTCTTC 58.116 40.000 0.00 0.00 37.17 2.87
2210 2351 6.441924 AGGATGGAGACTTTCATAGTTCTTCA 59.558 38.462 0.00 0.00 37.17 3.02
2211 2352 7.127032 AGGATGGAGACTTTCATAGTTCTTCAT 59.873 37.037 0.00 0.00 37.17 2.57
2212 2353 8.424918 GGATGGAGACTTTCATAGTTCTTCATA 58.575 37.037 0.00 0.00 37.17 2.15
2213 2354 9.995003 GATGGAGACTTTCATAGTTCTTCATAT 57.005 33.333 0.00 0.00 37.17 1.78
2215 2356 9.823647 TGGAGACTTTCATAGTTCTTCATATTC 57.176 33.333 0.00 0.00 37.17 1.75
2216 2357 8.973378 GGAGACTTTCATAGTTCTTCATATTCG 58.027 37.037 0.00 0.00 37.17 3.34
2217 2358 9.522804 GAGACTTTCATAGTTCTTCATATTCGT 57.477 33.333 0.00 0.00 37.17 3.85
2218 2359 9.522804 AGACTTTCATAGTTCTTCATATTCGTC 57.477 33.333 0.00 0.00 37.17 4.20
2219 2360 9.302345 GACTTTCATAGTTCTTCATATTCGTCA 57.698 33.333 0.00 0.00 37.17 4.35
2220 2361 9.823647 ACTTTCATAGTTCTTCATATTCGTCAT 57.176 29.630 0.00 0.00 31.29 3.06
2222 2363 8.818141 TTCATAGTTCTTCATATTCGTCATCC 57.182 34.615 0.00 0.00 0.00 3.51
2223 2364 7.378966 TCATAGTTCTTCATATTCGTCATCCC 58.621 38.462 0.00 0.00 0.00 3.85
2224 2365 5.614324 AGTTCTTCATATTCGTCATCCCA 57.386 39.130 0.00 0.00 0.00 4.37
2225 2366 6.179906 AGTTCTTCATATTCGTCATCCCAT 57.820 37.500 0.00 0.00 0.00 4.00
2226 2367 6.595682 AGTTCTTCATATTCGTCATCCCATT 58.404 36.000 0.00 0.00 0.00 3.16
2227 2368 7.735917 AGTTCTTCATATTCGTCATCCCATTA 58.264 34.615 0.00 0.00 0.00 1.90
2228 2369 8.378565 AGTTCTTCATATTCGTCATCCCATTAT 58.621 33.333 0.00 0.00 0.00 1.28
2229 2370 9.653287 GTTCTTCATATTCGTCATCCCATTATA 57.347 33.333 0.00 0.00 0.00 0.98
2232 2373 9.265901 CTTCATATTCGTCATCCCATTATATCC 57.734 37.037 0.00 0.00 0.00 2.59
2233 2374 7.433680 TCATATTCGTCATCCCATTATATCCG 58.566 38.462 0.00 0.00 0.00 4.18
2234 2375 5.677319 ATTCGTCATCCCATTATATCCGT 57.323 39.130 0.00 0.00 0.00 4.69
2235 2376 4.713824 TCGTCATCCCATTATATCCGTC 57.286 45.455 0.00 0.00 0.00 4.79
2236 2377 3.128068 TCGTCATCCCATTATATCCGTCG 59.872 47.826 0.00 0.00 0.00 5.12
2237 2378 3.128068 CGTCATCCCATTATATCCGTCGA 59.872 47.826 0.00 0.00 0.00 4.20
2238 2379 4.202020 CGTCATCCCATTATATCCGTCGAT 60.202 45.833 0.00 0.00 0.00 3.59
2239 2380 5.661458 GTCATCCCATTATATCCGTCGATT 58.339 41.667 0.00 0.00 0.00 3.34
2240 2381 6.106673 GTCATCCCATTATATCCGTCGATTT 58.893 40.000 0.00 0.00 0.00 2.17
2241 2382 6.594159 GTCATCCCATTATATCCGTCGATTTT 59.406 38.462 0.00 0.00 0.00 1.82
2242 2383 7.762615 GTCATCCCATTATATCCGTCGATTTTA 59.237 37.037 0.00 0.00 0.00 1.52
2243 2384 8.482943 TCATCCCATTATATCCGTCGATTTTAT 58.517 33.333 0.00 0.00 0.00 1.40
2244 2385 8.551205 CATCCCATTATATCCGTCGATTTTATG 58.449 37.037 0.00 0.00 0.00 1.90
2245 2386 7.617225 TCCCATTATATCCGTCGATTTTATGT 58.383 34.615 0.00 0.00 0.00 2.29
2246 2387 7.762615 TCCCATTATATCCGTCGATTTTATGTC 59.237 37.037 0.00 0.00 0.00 3.06
2247 2388 7.547722 CCCATTATATCCGTCGATTTTATGTCA 59.452 37.037 0.00 0.00 0.00 3.58
2248 2389 8.931775 CCATTATATCCGTCGATTTTATGTCAA 58.068 33.333 0.00 0.00 0.00 3.18
2249 2390 9.958285 CATTATATCCGTCGATTTTATGTCAAG 57.042 33.333 0.00 0.00 0.00 3.02
2250 2391 4.795970 ATCCGTCGATTTTATGTCAAGC 57.204 40.909 0.00 0.00 0.00 4.01
2251 2392 3.857052 TCCGTCGATTTTATGTCAAGCT 58.143 40.909 0.00 0.00 0.00 3.74
2252 2393 4.250464 TCCGTCGATTTTATGTCAAGCTT 58.750 39.130 0.00 0.00 0.00 3.74
2253 2394 5.412640 TCCGTCGATTTTATGTCAAGCTTA 58.587 37.500 0.00 0.00 0.00 3.09
2254 2395 5.870433 TCCGTCGATTTTATGTCAAGCTTAA 59.130 36.000 0.00 0.00 0.00 1.85
2255 2396 6.369340 TCCGTCGATTTTATGTCAAGCTTAAA 59.631 34.615 0.00 0.00 0.00 1.52
2256 2397 6.682863 CCGTCGATTTTATGTCAAGCTTAAAG 59.317 38.462 0.00 0.00 31.30 1.85
2257 2398 7.412563 CCGTCGATTTTATGTCAAGCTTAAAGA 60.413 37.037 0.00 0.00 31.30 2.52
2258 2399 8.116753 CGTCGATTTTATGTCAAGCTTAAAGAT 58.883 33.333 0.00 0.00 31.30 2.40
2259 2400 9.774742 GTCGATTTTATGTCAAGCTTAAAGATT 57.225 29.630 0.00 0.00 31.30 2.40
2264 2405 9.834628 TTTTATGTCAAGCTTAAAGATTAACGG 57.165 29.630 0.00 0.00 31.30 4.44
2265 2406 8.556213 TTATGTCAAGCTTAAAGATTAACGGT 57.444 30.769 0.00 0.00 0.00 4.83
2266 2407 6.870971 TGTCAAGCTTAAAGATTAACGGTT 57.129 33.333 0.00 0.00 0.00 4.44
2267 2408 6.664515 TGTCAAGCTTAAAGATTAACGGTTG 58.335 36.000 0.00 12.62 0.00 3.77
2268 2409 6.483974 TGTCAAGCTTAAAGATTAACGGTTGA 59.516 34.615 0.00 15.06 36.79 3.18
2269 2410 7.015877 GTCAAGCTTAAAGATTAACGGTTGAG 58.984 38.462 0.00 0.00 38.86 3.02
2270 2411 6.932400 TCAAGCTTAAAGATTAACGGTTGAGA 59.068 34.615 0.00 0.00 34.99 3.27
2271 2412 7.606456 TCAAGCTTAAAGATTAACGGTTGAGAT 59.394 33.333 0.00 0.00 34.99 2.75
2272 2413 7.923414 AGCTTAAAGATTAACGGTTGAGATT 57.077 32.000 3.07 0.00 0.00 2.40
2273 2414 8.336801 AGCTTAAAGATTAACGGTTGAGATTT 57.663 30.769 3.07 3.80 0.00 2.17
2274 2415 9.444600 AGCTTAAAGATTAACGGTTGAGATTTA 57.555 29.630 3.07 2.91 0.00 1.40
2279 2420 9.908152 AAAGATTAACGGTTGAGATTTAAAAGG 57.092 29.630 3.07 0.00 0.00 3.11
2280 2421 8.857694 AGATTAACGGTTGAGATTTAAAAGGA 57.142 30.769 3.07 0.00 0.00 3.36
2281 2422 8.947115 AGATTAACGGTTGAGATTTAAAAGGAG 58.053 33.333 3.07 0.00 0.00 3.69
2282 2423 8.857694 ATTAACGGTTGAGATTTAAAAGGAGA 57.142 30.769 3.07 0.00 0.00 3.71
2283 2424 8.680039 TTAACGGTTGAGATTTAAAAGGAGAA 57.320 30.769 3.07 0.00 0.00 2.87
2284 2425 7.576861 AACGGTTGAGATTTAAAAGGAGAAA 57.423 32.000 0.00 0.00 0.00 2.52
2285 2426 7.761038 ACGGTTGAGATTTAAAAGGAGAAAT 57.239 32.000 0.00 0.00 0.00 2.17
2286 2427 8.178313 ACGGTTGAGATTTAAAAGGAGAAATT 57.822 30.769 0.00 0.00 0.00 1.82
2287 2428 8.638873 ACGGTTGAGATTTAAAAGGAGAAATTT 58.361 29.630 0.00 0.00 0.00 1.82
2288 2429 9.476202 CGGTTGAGATTTAAAAGGAGAAATTTT 57.524 29.630 0.00 0.00 34.40 1.82
2302 2443 8.521170 AGGAGAAATTTTATACCTTTACCTGC 57.479 34.615 0.00 0.00 0.00 4.85
2303 2444 7.560262 AGGAGAAATTTTATACCTTTACCTGCC 59.440 37.037 0.00 0.00 0.00 4.85
2304 2445 7.201884 GGAGAAATTTTATACCTTTACCTGCCC 60.202 40.741 0.00 0.00 0.00 5.36
2305 2446 6.320418 AGAAATTTTATACCTTTACCTGCCCG 59.680 38.462 0.00 0.00 0.00 6.13
2306 2447 4.573021 TTTTATACCTTTACCTGCCCGT 57.427 40.909 0.00 0.00 0.00 5.28
2307 2448 5.690464 TTTTATACCTTTACCTGCCCGTA 57.310 39.130 0.00 0.00 0.00 4.02
2308 2449 5.892524 TTTATACCTTTACCTGCCCGTAT 57.107 39.130 0.00 0.00 0.00 3.06
2309 2450 6.992664 TTTATACCTTTACCTGCCCGTATA 57.007 37.500 0.00 0.00 0.00 1.47
2310 2451 6.992664 TTATACCTTTACCTGCCCGTATAA 57.007 37.500 0.00 0.00 0.00 0.98
2311 2452 3.832615 ACCTTTACCTGCCCGTATAAG 57.167 47.619 0.00 0.00 0.00 1.73
2312 2453 3.109928 ACCTTTACCTGCCCGTATAAGT 58.890 45.455 0.00 0.00 0.00 2.24
2313 2454 3.118519 ACCTTTACCTGCCCGTATAAGTG 60.119 47.826 0.00 0.00 0.00 3.16
2314 2455 3.463944 CTTTACCTGCCCGTATAAGTGG 58.536 50.000 0.00 0.00 0.00 4.00
2315 2456 2.457813 TACCTGCCCGTATAAGTGGA 57.542 50.000 0.00 0.00 0.00 4.02
2316 2457 1.575419 ACCTGCCCGTATAAGTGGAA 58.425 50.000 0.00 0.00 0.00 3.53
2317 2458 1.910671 ACCTGCCCGTATAAGTGGAAA 59.089 47.619 0.00 0.00 0.00 3.13
2318 2459 2.508300 ACCTGCCCGTATAAGTGGAAAT 59.492 45.455 0.00 0.00 0.00 2.17
2319 2460 3.139077 CCTGCCCGTATAAGTGGAAATC 58.861 50.000 0.00 0.00 0.00 2.17
2320 2461 3.181454 CCTGCCCGTATAAGTGGAAATCT 60.181 47.826 0.00 0.00 0.00 2.40
2321 2462 4.039973 CCTGCCCGTATAAGTGGAAATCTA 59.960 45.833 0.00 0.00 0.00 1.98
2322 2463 5.280011 CCTGCCCGTATAAGTGGAAATCTAT 60.280 44.000 0.00 0.00 0.00 1.98
2323 2464 6.182507 TGCCCGTATAAGTGGAAATCTATT 57.817 37.500 0.00 0.00 0.00 1.73
2324 2465 6.597562 TGCCCGTATAAGTGGAAATCTATTT 58.402 36.000 0.00 0.00 0.00 1.40
2325 2466 7.057894 TGCCCGTATAAGTGGAAATCTATTTT 58.942 34.615 0.00 0.00 0.00 1.82
2326 2467 7.558444 TGCCCGTATAAGTGGAAATCTATTTTT 59.442 33.333 0.00 0.00 0.00 1.94
2349 2490 3.924918 TTCTATCGTCCATGCTCTAGC 57.075 47.619 0.00 0.00 42.50 3.42
2350 2491 2.163509 TCTATCGTCCATGCTCTAGCC 58.836 52.381 0.00 0.00 41.18 3.93
2351 2492 2.166829 CTATCGTCCATGCTCTAGCCT 58.833 52.381 0.00 0.00 41.18 4.58
2352 2493 2.294449 ATCGTCCATGCTCTAGCCTA 57.706 50.000 0.00 0.00 41.18 3.93
2353 2494 1.319541 TCGTCCATGCTCTAGCCTAC 58.680 55.000 0.00 0.00 41.18 3.18
2354 2495 0.039978 CGTCCATGCTCTAGCCTACG 60.040 60.000 0.00 0.96 41.18 3.51
2355 2496 0.319125 GTCCATGCTCTAGCCTACGC 60.319 60.000 0.00 0.00 41.18 4.42
2356 2497 0.755327 TCCATGCTCTAGCCTACGCA 60.755 55.000 0.00 0.00 41.18 5.24
2357 2498 0.319383 CCATGCTCTAGCCTACGCAG 60.319 60.000 0.00 0.00 41.18 5.18
2358 2499 0.670706 CATGCTCTAGCCTACGCAGA 59.329 55.000 0.00 0.00 41.18 4.26
2359 2500 1.271934 CATGCTCTAGCCTACGCAGAT 59.728 52.381 0.00 0.00 41.18 2.90
2360 2501 1.403814 TGCTCTAGCCTACGCAGATT 58.596 50.000 0.00 0.00 41.18 2.40
2361 2502 1.757118 TGCTCTAGCCTACGCAGATTT 59.243 47.619 0.00 0.00 41.18 2.17
2362 2503 2.168521 TGCTCTAGCCTACGCAGATTTT 59.831 45.455 0.00 0.00 41.18 1.82
2363 2504 3.198872 GCTCTAGCCTACGCAGATTTTT 58.801 45.455 0.00 0.00 37.52 1.94
2382 2523 2.877097 TTTTGTCCATGCTCTAGCCA 57.123 45.000 0.00 0.00 41.18 4.75
2383 2524 2.877097 TTTGTCCATGCTCTAGCCAA 57.123 45.000 0.00 0.00 41.18 4.52
2384 2525 3.370840 TTTGTCCATGCTCTAGCCAAT 57.629 42.857 0.00 0.00 41.18 3.16
2385 2526 4.502105 TTTGTCCATGCTCTAGCCAATA 57.498 40.909 0.00 0.00 41.18 1.90
2386 2527 3.475566 TGTCCATGCTCTAGCCAATAC 57.524 47.619 0.00 0.00 41.18 1.89
2387 2528 2.224042 TGTCCATGCTCTAGCCAATACG 60.224 50.000 0.00 0.00 41.18 3.06
2388 2529 2.035961 GTCCATGCTCTAGCCAATACGA 59.964 50.000 0.00 0.00 41.18 3.43
2389 2530 2.698274 TCCATGCTCTAGCCAATACGAA 59.302 45.455 0.00 0.00 41.18 3.85
2390 2531 3.133901 TCCATGCTCTAGCCAATACGAAA 59.866 43.478 0.00 0.00 41.18 3.46
2391 2532 3.876914 CCATGCTCTAGCCAATACGAAAA 59.123 43.478 0.00 0.00 41.18 2.29
2392 2533 4.335315 CCATGCTCTAGCCAATACGAAAAA 59.665 41.667 0.00 0.00 41.18 1.94
2413 2554 7.475137 AAAAACCATTAATTCCAGGATTCGA 57.525 32.000 0.00 0.00 0.00 3.71
2414 2555 7.475137 AAAACCATTAATTCCAGGATTCGAA 57.525 32.000 0.00 0.00 0.00 3.71
2415 2556 6.451064 AACCATTAATTCCAGGATTCGAAC 57.549 37.500 0.00 0.00 0.00 3.95
2416 2557 4.887655 ACCATTAATTCCAGGATTCGAACC 59.112 41.667 0.00 4.22 0.00 3.62
2417 2558 4.024048 CCATTAATTCCAGGATTCGAACCG 60.024 45.833 0.00 1.51 0.00 4.44
2418 2559 2.781681 AATTCCAGGATTCGAACCGT 57.218 45.000 0.00 0.00 0.00 4.83
2419 2560 2.024176 ATTCCAGGATTCGAACCGTG 57.976 50.000 5.18 5.18 0.00 4.94
2420 2561 0.036765 TTCCAGGATTCGAACCGTGG 60.037 55.000 22.88 22.88 0.00 4.94
2421 2562 1.189524 TCCAGGATTCGAACCGTGGT 61.190 55.000 26.46 0.00 32.05 4.16
2422 2563 0.321298 CCAGGATTCGAACCGTGGTT 60.321 55.000 21.02 3.43 41.54 3.67
2423 2564 1.066716 CCAGGATTCGAACCGTGGTTA 60.067 52.381 21.02 0.00 38.60 2.85
2424 2565 2.419574 CCAGGATTCGAACCGTGGTTAT 60.420 50.000 21.02 0.00 38.60 1.89
2425 2566 3.267483 CAGGATTCGAACCGTGGTTATT 58.733 45.455 4.20 0.00 38.60 1.40
2426 2567 3.687698 CAGGATTCGAACCGTGGTTATTT 59.312 43.478 4.20 0.00 38.60 1.40
2427 2568 4.871557 CAGGATTCGAACCGTGGTTATTTA 59.128 41.667 4.20 0.00 38.60 1.40
2428 2569 4.872124 AGGATTCGAACCGTGGTTATTTAC 59.128 41.667 3.85 0.00 38.60 2.01
2429 2570 4.630940 GGATTCGAACCGTGGTTATTTACA 59.369 41.667 3.85 0.00 38.60 2.41
2430 2571 5.122082 GGATTCGAACCGTGGTTATTTACAA 59.878 40.000 3.85 0.00 38.60 2.41
2431 2572 5.998454 TTCGAACCGTGGTTATTTACAAA 57.002 34.783 3.85 0.00 38.60 2.83
2432 2573 5.594724 TCGAACCGTGGTTATTTACAAAG 57.405 39.130 3.85 0.00 38.60 2.77
2433 2574 5.295950 TCGAACCGTGGTTATTTACAAAGA 58.704 37.500 3.85 0.00 38.60 2.52
2434 2575 5.406175 TCGAACCGTGGTTATTTACAAAGAG 59.594 40.000 3.85 0.00 38.60 2.85
2435 2576 5.366829 AACCGTGGTTATTTACAAAGAGC 57.633 39.130 1.57 0.00 36.46 4.09
2436 2577 4.648651 ACCGTGGTTATTTACAAAGAGCT 58.351 39.130 0.00 0.00 0.00 4.09
2437 2578 5.067954 ACCGTGGTTATTTACAAAGAGCTT 58.932 37.500 0.00 0.00 0.00 3.74
2438 2579 6.232692 ACCGTGGTTATTTACAAAGAGCTTA 58.767 36.000 0.00 0.00 0.00 3.09
2439 2580 6.882678 ACCGTGGTTATTTACAAAGAGCTTAT 59.117 34.615 0.00 0.00 0.00 1.73
2440 2581 7.148306 ACCGTGGTTATTTACAAAGAGCTTATG 60.148 37.037 0.00 0.00 0.00 1.90
2441 2582 6.687105 CGTGGTTATTTACAAAGAGCTTATGC 59.313 38.462 0.00 0.00 40.05 3.14
2442 2583 6.972901 GTGGTTATTTACAAAGAGCTTATGCC 59.027 38.462 0.00 0.00 40.80 4.40
2443 2584 6.096282 TGGTTATTTACAAAGAGCTTATGCCC 59.904 38.462 0.00 0.00 40.80 5.36
2444 2585 4.900635 ATTTACAAAGAGCTTATGCCCG 57.099 40.909 0.00 0.00 40.80 6.13
2445 2586 1.663695 TACAAAGAGCTTATGCCCGC 58.336 50.000 0.00 0.00 40.80 6.13
2446 2587 0.035056 ACAAAGAGCTTATGCCCGCT 60.035 50.000 0.00 0.00 40.80 5.52
2447 2588 1.098050 CAAAGAGCTTATGCCCGCTT 58.902 50.000 0.00 0.00 40.80 4.68
2448 2589 1.098050 AAAGAGCTTATGCCCGCTTG 58.902 50.000 0.00 0.00 40.80 4.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 47 5.525378 GCATAGTGCTCTAGTGCTTGTAATT 59.475 40.000 17.08 0.00 40.96 1.40
59 68 3.197333 CGAGAGAGGGATGATAATGGCAT 59.803 47.826 0.00 0.00 0.00 4.40
60 69 2.564504 CGAGAGAGGGATGATAATGGCA 59.435 50.000 0.00 0.00 0.00 4.92
62 71 2.093764 GGCGAGAGAGGGATGATAATGG 60.094 54.545 0.00 0.00 0.00 3.16
66 75 0.609406 CCGGCGAGAGAGGGATGATA 60.609 60.000 9.30 0.00 0.00 2.15
83 92 1.156736 ACAAGATTTGTTCGGCTCCG 58.843 50.000 1.14 1.14 42.22 4.63
97 106 4.818005 TCTCGACTGTGTACTACAACAAGA 59.182 41.667 0.00 0.00 39.20 3.02
131 140 2.158608 GCTGAATATGTGGGGCCTTAGT 60.159 50.000 0.84 0.00 0.00 2.24
137 146 1.823470 TGCGCTGAATATGTGGGGC 60.823 57.895 9.73 0.00 37.97 5.80
147 156 4.678509 AAATTAAATCTCGTGCGCTGAA 57.321 36.364 9.73 0.00 0.00 3.02
169 178 7.557358 TGCTCAATACACATAGACAAATGGATT 59.443 33.333 0.00 0.00 0.00 3.01
177 186 4.440112 CGAGGTGCTCAATACACATAGACA 60.440 45.833 0.00 0.00 39.87 3.41
194 203 1.210931 CCTGCATGCAAACGAGGTG 59.789 57.895 22.88 7.09 0.00 4.00
200 209 2.431260 CCGTGCCTGCATGCAAAC 60.431 61.111 22.88 18.03 44.11 2.93
227 236 1.962321 TTAGGGCGGCGTCTGCATAA 61.962 55.000 12.73 3.24 45.35 1.90
238 247 1.287425 GTCGTTCTCAATTAGGGCGG 58.713 55.000 0.00 0.00 0.00 6.13
241 250 7.931948 AGTATTATTGGTCGTTCTCAATTAGGG 59.068 37.037 0.00 0.00 35.50 3.53
278 287 7.418254 GGTGCATAAGATCTTTCCCAAAATCAT 60.418 37.037 14.36 0.00 0.00 2.45
766 775 5.106987 ACACATTAACGTCGTATTCCCAAAC 60.107 40.000 0.00 0.00 0.00 2.93
954 973 9.775854 CTGGATCAAATGTTCTATATGAGAGTT 57.224 33.333 0.00 0.00 34.93 3.01
955 974 7.877097 GCTGGATCAAATGTTCTATATGAGAGT 59.123 37.037 0.00 0.00 34.93 3.24
956 975 7.876582 TGCTGGATCAAATGTTCTATATGAGAG 59.123 37.037 0.00 0.00 34.93 3.20
957 976 7.738847 TGCTGGATCAAATGTTCTATATGAGA 58.261 34.615 0.00 0.00 0.00 3.27
958 977 7.974482 TGCTGGATCAAATGTTCTATATGAG 57.026 36.000 0.00 0.00 0.00 2.90
959 978 8.212995 TCTTGCTGGATCAAATGTTCTATATGA 58.787 33.333 0.00 0.00 0.00 2.15
960 979 8.387190 TCTTGCTGGATCAAATGTTCTATATG 57.613 34.615 0.00 0.00 0.00 1.78
961 980 8.985315 TTCTTGCTGGATCAAATGTTCTATAT 57.015 30.769 0.00 0.00 0.00 0.86
962 981 7.012704 GCTTCTTGCTGGATCAAATGTTCTATA 59.987 37.037 0.00 0.00 38.95 1.31
963 982 6.183360 GCTTCTTGCTGGATCAAATGTTCTAT 60.183 38.462 0.00 0.00 38.95 1.98
964 983 5.124457 GCTTCTTGCTGGATCAAATGTTCTA 59.876 40.000 0.00 0.00 38.95 2.10
965 984 4.082354 GCTTCTTGCTGGATCAAATGTTCT 60.082 41.667 0.00 0.00 38.95 3.01
966 985 4.171754 GCTTCTTGCTGGATCAAATGTTC 58.828 43.478 0.00 0.00 38.95 3.18
967 986 3.575256 TGCTTCTTGCTGGATCAAATGTT 59.425 39.130 0.00 0.00 43.37 2.71
968 987 3.159472 TGCTTCTTGCTGGATCAAATGT 58.841 40.909 0.00 0.00 43.37 2.71
993 1012 2.498167 CCGCTCCCCTTCATATTTGAG 58.502 52.381 0.00 0.00 32.27 3.02
996 1015 0.846693 AGCCGCTCCCCTTCATATTT 59.153 50.000 0.00 0.00 0.00 1.40
1012 1031 2.488153 GAGTAACCATGAACACCAAGCC 59.512 50.000 0.00 0.00 0.00 4.35
1018 1037 5.298276 TGGACAAAAGAGTAACCATGAACAC 59.702 40.000 0.00 0.00 0.00 3.32
1024 1043 4.261801 CCGATGGACAAAAGAGTAACCAT 58.738 43.478 0.00 0.00 40.21 3.55
1050 1069 2.738521 CGTCCGGTCACTGCAAGG 60.739 66.667 0.00 0.00 39.30 3.61
1144 1202 9.265938 CTGATGTATAATTGTGCGCAAATATAC 57.734 33.333 32.52 32.52 45.32 1.47
1159 1217 7.201732 GCTTGTTAGTGCAACCTGATGTATAAT 60.202 37.037 0.00 0.00 37.80 1.28
1163 1221 3.751175 GCTTGTTAGTGCAACCTGATGTA 59.249 43.478 0.00 0.00 37.80 2.29
1244 1317 1.456296 CAGGAGCATTAGCACTTGCA 58.544 50.000 3.62 0.00 45.49 4.08
1279 1352 1.859703 CGCTAAGCTTGCTCTCATCTG 59.140 52.381 9.86 0.00 0.00 2.90
1293 1366 3.997021 ACCAGACAAAATCTCACGCTAAG 59.003 43.478 0.00 0.00 34.41 2.18
1404 1477 1.864711 GCAGTTTGCTTGACACTCGTA 59.135 47.619 0.00 0.00 40.96 3.43
1483 1556 9.617523 CCATCTTTTTATTCAAATAGGGCAATT 57.382 29.630 0.00 0.00 0.00 2.32
1484 1557 8.771286 ACCATCTTTTTATTCAAATAGGGCAAT 58.229 29.630 0.00 0.00 0.00 3.56
1513 1586 6.443934 TTCTAGCAAAACAGCAGTTAAACA 57.556 33.333 0.00 0.00 36.84 2.83
1514 1587 7.930513 AATTCTAGCAAAACAGCAGTTAAAC 57.069 32.000 0.00 0.00 36.84 2.01
1515 1588 8.846211 ACTAATTCTAGCAAAACAGCAGTTAAA 58.154 29.630 0.00 0.00 36.84 1.52
1539 1612 3.118038 GGGGGCTTTTCCAAAAAGAAACT 60.118 43.478 14.62 0.00 35.53 2.66
1543 1616 1.044611 CGGGGGCTTTTCCAAAAAGA 58.955 50.000 14.62 0.00 36.21 2.52
1544 1617 0.034756 CCGGGGGCTTTTCCAAAAAG 59.965 55.000 7.62 7.62 36.21 2.27
1545 1618 2.046009 GCCGGGGGCTTTTCCAAAAA 62.046 55.000 2.18 0.00 46.69 1.94
1546 1619 2.512355 GCCGGGGGCTTTTCCAAAA 61.512 57.895 2.18 0.00 46.69 2.44
1547 1620 2.920384 GCCGGGGGCTTTTCCAAA 60.920 61.111 2.18 0.00 46.69 3.28
1561 1634 2.109799 ATTCCGATGCAGAGGCCG 59.890 61.111 0.00 0.00 40.13 6.13
1604 1677 8.547967 TTATGACTTTGTGATACTTTGAGACC 57.452 34.615 0.00 0.00 0.00 3.85
1632 1706 2.004583 ACGCTTGCGAGCTGTAATAA 57.995 45.000 23.42 0.00 46.96 1.40
1671 1751 3.751479 TGCGATATTGAGCATACACCT 57.249 42.857 0.00 0.00 38.59 4.00
1672 1752 3.809832 AGTTGCGATATTGAGCATACACC 59.190 43.478 0.00 0.00 43.42 4.16
1676 1756 4.071961 ACCAGTTGCGATATTGAGCATA 57.928 40.909 0.00 0.00 43.42 3.14
1689 1769 5.414454 TCCTTTACATTGTCATACCAGTTGC 59.586 40.000 0.00 0.00 0.00 4.17
1694 1774 4.509616 CCGTCCTTTACATTGTCATACCA 58.490 43.478 0.00 0.00 0.00 3.25
1715 1795 3.246416 TGATAGGAGTCTAGGAAGCCC 57.754 52.381 0.00 0.00 0.00 5.19
1716 1796 4.156477 ACATGATAGGAGTCTAGGAAGCC 58.844 47.826 0.00 0.00 0.00 4.35
1735 1815 1.442769 GGATGGCGATCGCATAACAT 58.557 50.000 38.00 30.24 44.11 2.71
1771 1851 2.064581 GGGAGATGGTAGCACGGGT 61.065 63.158 0.00 0.00 0.00 5.28
1816 1896 5.690865 ACTCACTCTTATGGACTCTAGGAG 58.309 45.833 0.00 0.00 35.52 3.69
1817 1897 5.718801 ACTCACTCTTATGGACTCTAGGA 57.281 43.478 0.00 0.00 0.00 2.94
1821 1901 9.073475 GACAATATACTCACTCTTATGGACTCT 57.927 37.037 0.00 0.00 0.00 3.24
1877 2016 5.097742 TGTGCGCTTATATGGGCTATATT 57.902 39.130 22.65 0.00 44.66 1.28
1904 2043 1.069978 TGCGGCTCATATTCGGATTGA 59.930 47.619 0.00 0.00 0.00 2.57
1935 2074 2.224499 GGGACGTGGTTAGTTTGGGTTA 60.224 50.000 0.00 0.00 0.00 2.85
1941 2080 5.131784 TGTTATTTGGGACGTGGTTAGTTT 58.868 37.500 0.00 0.00 0.00 2.66
1990 2129 8.375506 TGAAGAACGATCCATATAGCCTTTAAT 58.624 33.333 0.00 0.00 0.00 1.40
2014 2153 3.740764 GCCCACTCACAAAATTGCTTTGA 60.741 43.478 4.11 0.00 46.35 2.69
2026 2165 4.225042 ACTTGTATAGAATGCCCACTCACA 59.775 41.667 0.00 0.00 0.00 3.58
2028 2167 4.225042 ACACTTGTATAGAATGCCCACTCA 59.775 41.667 0.00 0.00 0.00 3.41
2064 2205 3.796178 CGTTGTTGTTTTTGTGATCAGGG 59.204 43.478 0.00 0.00 0.00 4.45
2066 2207 4.667262 TCCGTTGTTGTTTTTGTGATCAG 58.333 39.130 0.00 0.00 0.00 2.90
2087 2228 1.761198 AGGCGATGGGTAGGTAGTTTC 59.239 52.381 0.00 0.00 0.00 2.78
2088 2229 1.761198 GAGGCGATGGGTAGGTAGTTT 59.239 52.381 0.00 0.00 0.00 2.66
2132 2273 3.120321 TCCGTACACAAGCAAGTGATT 57.880 42.857 14.45 0.00 42.05 2.57
2180 2321 9.620259 GAACTATGAAAGTCTCCATCCTTTAAT 57.380 33.333 0.00 0.00 37.50 1.40
2181 2322 8.826765 AGAACTATGAAAGTCTCCATCCTTTAA 58.173 33.333 0.00 0.00 37.50 1.52
2182 2323 8.380742 AGAACTATGAAAGTCTCCATCCTTTA 57.619 34.615 0.00 0.00 37.50 1.85
2183 2324 7.264294 AGAACTATGAAAGTCTCCATCCTTT 57.736 36.000 0.00 0.00 37.50 3.11
2184 2325 6.882768 AGAACTATGAAAGTCTCCATCCTT 57.117 37.500 0.00 0.00 37.50 3.36
2185 2326 6.441924 TGAAGAACTATGAAAGTCTCCATCCT 59.558 38.462 0.00 0.00 37.50 3.24
2186 2327 6.644347 TGAAGAACTATGAAAGTCTCCATCC 58.356 40.000 0.00 0.00 37.50 3.51
2187 2328 9.995003 ATATGAAGAACTATGAAAGTCTCCATC 57.005 33.333 0.00 0.00 37.50 3.51
2189 2330 9.823647 GAATATGAAGAACTATGAAAGTCTCCA 57.176 33.333 0.00 0.00 37.50 3.86
2190 2331 8.973378 CGAATATGAAGAACTATGAAAGTCTCC 58.027 37.037 0.00 0.00 37.50 3.71
2191 2332 9.522804 ACGAATATGAAGAACTATGAAAGTCTC 57.477 33.333 0.00 0.00 37.50 3.36
2192 2333 9.522804 GACGAATATGAAGAACTATGAAAGTCT 57.477 33.333 0.00 0.00 37.50 3.24
2193 2334 9.302345 TGACGAATATGAAGAACTATGAAAGTC 57.698 33.333 0.00 0.00 37.50 3.01
2194 2335 9.823647 ATGACGAATATGAAGAACTATGAAAGT 57.176 29.630 0.00 0.00 41.49 2.66
2196 2337 9.261180 GGATGACGAATATGAAGAACTATGAAA 57.739 33.333 0.00 0.00 0.00 2.69
2197 2338 7.872993 GGGATGACGAATATGAAGAACTATGAA 59.127 37.037 0.00 0.00 0.00 2.57
2198 2339 7.015195 TGGGATGACGAATATGAAGAACTATGA 59.985 37.037 0.00 0.00 0.00 2.15
2199 2340 7.154656 TGGGATGACGAATATGAAGAACTATG 58.845 38.462 0.00 0.00 0.00 2.23
2200 2341 7.303182 TGGGATGACGAATATGAAGAACTAT 57.697 36.000 0.00 0.00 0.00 2.12
2201 2342 6.724893 TGGGATGACGAATATGAAGAACTA 57.275 37.500 0.00 0.00 0.00 2.24
2202 2343 5.614324 TGGGATGACGAATATGAAGAACT 57.386 39.130 0.00 0.00 0.00 3.01
2203 2344 6.867662 AATGGGATGACGAATATGAAGAAC 57.132 37.500 0.00 0.00 0.00 3.01
2206 2347 9.265901 GGATATAATGGGATGACGAATATGAAG 57.734 37.037 0.00 0.00 0.00 3.02
2207 2348 7.926018 CGGATATAATGGGATGACGAATATGAA 59.074 37.037 0.00 0.00 0.00 2.57
2208 2349 7.069455 ACGGATATAATGGGATGACGAATATGA 59.931 37.037 0.00 0.00 0.00 2.15
2209 2350 7.210174 ACGGATATAATGGGATGACGAATATG 58.790 38.462 0.00 0.00 0.00 1.78
2210 2351 7.361457 ACGGATATAATGGGATGACGAATAT 57.639 36.000 0.00 0.00 0.00 1.28
2211 2352 6.459161 CGACGGATATAATGGGATGACGAATA 60.459 42.308 0.00 0.00 0.00 1.75
2212 2353 5.661458 GACGGATATAATGGGATGACGAAT 58.339 41.667 0.00 0.00 0.00 3.34
2213 2354 4.380128 CGACGGATATAATGGGATGACGAA 60.380 45.833 0.00 0.00 0.00 3.85
2214 2355 3.128068 CGACGGATATAATGGGATGACGA 59.872 47.826 0.00 0.00 0.00 4.20
2215 2356 3.128068 TCGACGGATATAATGGGATGACG 59.872 47.826 0.00 0.00 0.00 4.35
2216 2357 4.713824 TCGACGGATATAATGGGATGAC 57.286 45.455 0.00 0.00 0.00 3.06
2217 2358 5.932619 AATCGACGGATATAATGGGATGA 57.067 39.130 0.00 0.00 31.01 2.92
2218 2359 6.985188 AAAATCGACGGATATAATGGGATG 57.015 37.500 0.00 0.00 31.01 3.51
2219 2360 8.265055 ACATAAAATCGACGGATATAATGGGAT 58.735 33.333 0.00 0.00 31.01 3.85
2220 2361 7.617225 ACATAAAATCGACGGATATAATGGGA 58.383 34.615 0.00 0.00 31.01 4.37
2221 2362 7.547722 TGACATAAAATCGACGGATATAATGGG 59.452 37.037 0.00 0.00 31.01 4.00
2222 2363 8.474006 TGACATAAAATCGACGGATATAATGG 57.526 34.615 0.00 0.00 31.01 3.16
2223 2364 9.958285 CTTGACATAAAATCGACGGATATAATG 57.042 33.333 0.00 0.00 31.01 1.90
2224 2365 8.656849 GCTTGACATAAAATCGACGGATATAAT 58.343 33.333 0.00 0.00 31.01 1.28
2225 2366 7.870954 AGCTTGACATAAAATCGACGGATATAA 59.129 33.333 0.00 0.00 31.01 0.98
2226 2367 7.375834 AGCTTGACATAAAATCGACGGATATA 58.624 34.615 0.00 0.00 31.01 0.86
2227 2368 6.223852 AGCTTGACATAAAATCGACGGATAT 58.776 36.000 0.00 0.00 31.01 1.63
2228 2369 5.597806 AGCTTGACATAAAATCGACGGATA 58.402 37.500 0.00 0.00 31.01 2.59
2229 2370 4.442706 AGCTTGACATAAAATCGACGGAT 58.557 39.130 0.00 0.00 0.00 4.18
2230 2371 3.857052 AGCTTGACATAAAATCGACGGA 58.143 40.909 0.00 0.00 0.00 4.69
2231 2372 4.600012 AAGCTTGACATAAAATCGACGG 57.400 40.909 0.00 0.00 0.00 4.79
2232 2373 7.453034 TCTTTAAGCTTGACATAAAATCGACG 58.547 34.615 9.86 0.00 0.00 5.12
2233 2374 9.774742 AATCTTTAAGCTTGACATAAAATCGAC 57.225 29.630 9.86 0.00 0.00 4.20
2238 2379 9.834628 CCGTTAATCTTTAAGCTTGACATAAAA 57.165 29.630 9.86 0.00 0.00 1.52
2239 2380 9.005777 ACCGTTAATCTTTAAGCTTGACATAAA 57.994 29.630 9.86 0.00 0.00 1.40
2240 2381 8.556213 ACCGTTAATCTTTAAGCTTGACATAA 57.444 30.769 9.86 0.00 0.00 1.90
2241 2382 8.447833 CAACCGTTAATCTTTAAGCTTGACATA 58.552 33.333 9.86 0.00 0.00 2.29
2242 2383 7.174253 TCAACCGTTAATCTTTAAGCTTGACAT 59.826 33.333 9.86 0.00 0.00 3.06
2243 2384 6.483974 TCAACCGTTAATCTTTAAGCTTGACA 59.516 34.615 9.86 0.00 0.00 3.58
2244 2385 6.894828 TCAACCGTTAATCTTTAAGCTTGAC 58.105 36.000 9.86 0.00 0.00 3.18
2245 2386 6.932400 TCTCAACCGTTAATCTTTAAGCTTGA 59.068 34.615 9.86 0.00 0.00 3.02
2246 2387 7.129109 TCTCAACCGTTAATCTTTAAGCTTG 57.871 36.000 9.86 0.00 0.00 4.01
2247 2388 7.923414 ATCTCAACCGTTAATCTTTAAGCTT 57.077 32.000 3.48 3.48 0.00 3.74
2248 2389 7.923414 AATCTCAACCGTTAATCTTTAAGCT 57.077 32.000 0.00 0.00 0.00 3.74
2253 2394 9.908152 CCTTTTAAATCTCAACCGTTAATCTTT 57.092 29.630 0.00 0.00 0.00 2.52
2254 2395 9.292195 TCCTTTTAAATCTCAACCGTTAATCTT 57.708 29.630 0.00 0.00 0.00 2.40
2255 2396 8.857694 TCCTTTTAAATCTCAACCGTTAATCT 57.142 30.769 0.00 0.00 0.00 2.40
2256 2397 8.943002 TCTCCTTTTAAATCTCAACCGTTAATC 58.057 33.333 0.00 0.00 0.00 1.75
2257 2398 8.857694 TCTCCTTTTAAATCTCAACCGTTAAT 57.142 30.769 0.00 0.00 0.00 1.40
2258 2399 8.680039 TTCTCCTTTTAAATCTCAACCGTTAA 57.320 30.769 0.00 0.00 0.00 2.01
2259 2400 8.680039 TTTCTCCTTTTAAATCTCAACCGTTA 57.320 30.769 0.00 0.00 0.00 3.18
2260 2401 7.576861 TTTCTCCTTTTAAATCTCAACCGTT 57.423 32.000 0.00 0.00 0.00 4.44
2261 2402 7.761038 ATTTCTCCTTTTAAATCTCAACCGT 57.239 32.000 0.00 0.00 0.00 4.83
2262 2403 9.476202 AAAATTTCTCCTTTTAAATCTCAACCG 57.524 29.630 0.00 0.00 0.00 4.44
2276 2417 8.967918 GCAGGTAAAGGTATAAAATTTCTCCTT 58.032 33.333 0.00 1.23 36.95 3.36
2277 2418 7.560262 GGCAGGTAAAGGTATAAAATTTCTCCT 59.440 37.037 0.00 0.00 0.00 3.69
2278 2419 7.201884 GGGCAGGTAAAGGTATAAAATTTCTCC 60.202 40.741 0.00 0.00 0.00 3.71
2279 2420 7.468220 CGGGCAGGTAAAGGTATAAAATTTCTC 60.468 40.741 0.00 0.00 0.00 2.87
2280 2421 6.320418 CGGGCAGGTAAAGGTATAAAATTTCT 59.680 38.462 0.00 0.00 0.00 2.52
2281 2422 6.095860 ACGGGCAGGTAAAGGTATAAAATTTC 59.904 38.462 0.00 0.00 0.00 2.17
2282 2423 5.953548 ACGGGCAGGTAAAGGTATAAAATTT 59.046 36.000 0.00 0.00 0.00 1.82
2283 2424 5.512298 ACGGGCAGGTAAAGGTATAAAATT 58.488 37.500 0.00 0.00 0.00 1.82
2284 2425 5.120054 ACGGGCAGGTAAAGGTATAAAAT 57.880 39.130 0.00 0.00 0.00 1.82
2285 2426 4.573021 ACGGGCAGGTAAAGGTATAAAA 57.427 40.909 0.00 0.00 0.00 1.52
2286 2427 5.892524 ATACGGGCAGGTAAAGGTATAAA 57.107 39.130 0.00 0.00 0.00 1.40
2287 2428 6.554605 ACTTATACGGGCAGGTAAAGGTATAA 59.445 38.462 0.00 0.00 33.93 0.98
2288 2429 6.015180 CACTTATACGGGCAGGTAAAGGTATA 60.015 42.308 0.00 0.00 0.00 1.47
2289 2430 4.903649 ACTTATACGGGCAGGTAAAGGTAT 59.096 41.667 0.00 0.00 0.00 2.73
2290 2431 4.099881 CACTTATACGGGCAGGTAAAGGTA 59.900 45.833 0.00 0.00 0.00 3.08
2291 2432 3.109928 ACTTATACGGGCAGGTAAAGGT 58.890 45.455 0.00 0.00 0.00 3.50
2292 2433 3.463944 CACTTATACGGGCAGGTAAAGG 58.536 50.000 0.00 0.00 0.00 3.11
2293 2434 3.133362 TCCACTTATACGGGCAGGTAAAG 59.867 47.826 0.00 0.43 0.00 1.85
2294 2435 3.106054 TCCACTTATACGGGCAGGTAAA 58.894 45.455 0.00 0.00 0.00 2.01
2295 2436 2.749600 TCCACTTATACGGGCAGGTAA 58.250 47.619 0.00 0.00 0.00 2.85
2296 2437 2.457813 TCCACTTATACGGGCAGGTA 57.542 50.000 0.00 0.00 0.00 3.08
2297 2438 1.575419 TTCCACTTATACGGGCAGGT 58.425 50.000 0.00 0.00 0.00 4.00
2298 2439 2.702592 TTTCCACTTATACGGGCAGG 57.297 50.000 0.00 0.00 0.00 4.85
2299 2440 4.073293 AGATTTCCACTTATACGGGCAG 57.927 45.455 0.00 0.00 0.00 4.85
2300 2441 5.818678 ATAGATTTCCACTTATACGGGCA 57.181 39.130 0.00 0.00 0.00 5.36
2301 2442 7.506328 AAAATAGATTTCCACTTATACGGGC 57.494 36.000 0.00 0.00 0.00 6.13
2326 2467 5.050490 GCTAGAGCATGGACGATAGAAAAA 58.950 41.667 0.00 0.00 41.59 1.94
2327 2468 4.501571 GGCTAGAGCATGGACGATAGAAAA 60.502 45.833 3.54 0.00 44.36 2.29
2328 2469 3.005897 GGCTAGAGCATGGACGATAGAAA 59.994 47.826 3.54 0.00 44.36 2.52
2329 2470 2.558795 GGCTAGAGCATGGACGATAGAA 59.441 50.000 3.54 0.00 44.36 2.10
2330 2471 2.163509 GGCTAGAGCATGGACGATAGA 58.836 52.381 3.54 0.00 44.36 1.98
2331 2472 2.166829 AGGCTAGAGCATGGACGATAG 58.833 52.381 3.54 0.00 44.36 2.08
2332 2473 2.294449 AGGCTAGAGCATGGACGATA 57.706 50.000 3.54 0.00 44.36 2.92
2333 2474 1.889829 GTAGGCTAGAGCATGGACGAT 59.110 52.381 3.54 0.00 44.36 3.73
2334 2475 1.319541 GTAGGCTAGAGCATGGACGA 58.680 55.000 3.54 0.00 44.36 4.20
2335 2476 0.039978 CGTAGGCTAGAGCATGGACG 60.040 60.000 3.54 0.50 44.36 4.79
2336 2477 0.319125 GCGTAGGCTAGAGCATGGAC 60.319 60.000 14.72 0.00 44.36 4.02
2337 2478 0.755327 TGCGTAGGCTAGAGCATGGA 60.755 55.000 17.42 0.00 44.36 3.41
2338 2479 0.319383 CTGCGTAGGCTAGAGCATGG 60.319 60.000 20.39 9.79 44.36 3.66
2339 2480 0.670706 TCTGCGTAGGCTAGAGCATG 59.329 55.000 20.39 15.37 44.36 4.06
2340 2481 1.626686 ATCTGCGTAGGCTAGAGCAT 58.373 50.000 20.39 8.17 44.36 3.79
2341 2482 1.403814 AATCTGCGTAGGCTAGAGCA 58.596 50.000 19.38 19.38 44.36 4.26
2342 2483 2.517650 AAATCTGCGTAGGCTAGAGC 57.482 50.000 9.11 13.23 40.82 4.09
2362 2503 3.153369 TGGCTAGAGCATGGACAAAAA 57.847 42.857 3.54 0.00 44.36 1.94
2363 2504 2.877097 TGGCTAGAGCATGGACAAAA 57.123 45.000 3.54 0.00 44.36 2.44
2364 2505 2.877097 TTGGCTAGAGCATGGACAAA 57.123 45.000 3.54 0.00 44.36 2.83
2365 2506 3.741075 CGTATTGGCTAGAGCATGGACAA 60.741 47.826 3.54 0.00 44.36 3.18
2366 2507 2.224042 CGTATTGGCTAGAGCATGGACA 60.224 50.000 3.54 0.00 44.36 4.02
2367 2508 2.035961 TCGTATTGGCTAGAGCATGGAC 59.964 50.000 3.54 0.00 44.36 4.02
2368 2509 2.316108 TCGTATTGGCTAGAGCATGGA 58.684 47.619 3.54 0.00 44.36 3.41
2369 2510 2.820059 TCGTATTGGCTAGAGCATGG 57.180 50.000 3.54 0.00 44.36 3.66
2370 2511 5.484173 TTTTTCGTATTGGCTAGAGCATG 57.516 39.130 3.54 0.00 44.36 4.06
2389 2530 7.475137 TCGAATCCTGGAATTAATGGTTTTT 57.525 32.000 0.00 0.00 0.00 1.94
2390 2531 7.320399 GTTCGAATCCTGGAATTAATGGTTTT 58.680 34.615 0.00 0.00 0.00 2.43
2391 2532 6.127451 GGTTCGAATCCTGGAATTAATGGTTT 60.127 38.462 0.00 0.00 0.00 3.27
2392 2533 5.359860 GGTTCGAATCCTGGAATTAATGGTT 59.640 40.000 0.00 0.00 0.00 3.67
2393 2534 4.887655 GGTTCGAATCCTGGAATTAATGGT 59.112 41.667 0.00 0.00 0.00 3.55
2394 2535 4.024048 CGGTTCGAATCCTGGAATTAATGG 60.024 45.833 0.00 0.00 0.00 3.16
2395 2536 4.574828 ACGGTTCGAATCCTGGAATTAATG 59.425 41.667 0.00 0.00 0.00 1.90
2396 2537 4.574828 CACGGTTCGAATCCTGGAATTAAT 59.425 41.667 0.00 0.00 0.00 1.40
2397 2538 3.936453 CACGGTTCGAATCCTGGAATTAA 59.064 43.478 0.00 0.00 0.00 1.40
2398 2539 3.527533 CACGGTTCGAATCCTGGAATTA 58.472 45.455 0.00 0.00 0.00 1.40
2399 2540 2.356135 CACGGTTCGAATCCTGGAATT 58.644 47.619 0.00 0.00 0.00 2.17
2400 2541 1.406887 CCACGGTTCGAATCCTGGAAT 60.407 52.381 18.47 0.00 0.00 3.01
2401 2542 0.036765 CCACGGTTCGAATCCTGGAA 60.037 55.000 18.47 0.00 0.00 3.53
2402 2543 1.189524 ACCACGGTTCGAATCCTGGA 61.190 55.000 26.87 0.00 32.05 3.86
2403 2544 0.321298 AACCACGGTTCGAATCCTGG 60.321 55.000 20.77 20.77 32.09 4.45
2404 2545 2.373540 TAACCACGGTTCGAATCCTG 57.626 50.000 4.34 0.07 39.31 3.86
2405 2546 3.622166 AATAACCACGGTTCGAATCCT 57.378 42.857 4.34 0.00 39.31 3.24
2406 2547 4.630940 TGTAAATAACCACGGTTCGAATCC 59.369 41.667 4.34 3.87 39.31 3.01
2407 2548 5.783100 TGTAAATAACCACGGTTCGAATC 57.217 39.130 4.34 0.00 39.31 2.52
2408 2549 6.427547 TCTTTGTAAATAACCACGGTTCGAAT 59.572 34.615 4.34 0.00 39.31 3.34
2409 2550 5.757320 TCTTTGTAAATAACCACGGTTCGAA 59.243 36.000 4.34 0.00 39.31 3.71
2410 2551 5.295950 TCTTTGTAAATAACCACGGTTCGA 58.704 37.500 4.34 0.00 39.31 3.71
2411 2552 5.594724 TCTTTGTAAATAACCACGGTTCG 57.405 39.130 4.34 0.00 39.31 3.95
2412 2553 5.180680 AGCTCTTTGTAAATAACCACGGTTC 59.819 40.000 4.34 0.00 39.31 3.62
2413 2554 5.067954 AGCTCTTTGTAAATAACCACGGTT 58.932 37.500 6.70 6.70 41.65 4.44
2414 2555 4.648651 AGCTCTTTGTAAATAACCACGGT 58.351 39.130 0.00 0.00 0.00 4.83
2415 2556 5.622770 AAGCTCTTTGTAAATAACCACGG 57.377 39.130 0.00 0.00 0.00 4.94
2416 2557 6.687105 GCATAAGCTCTTTGTAAATAACCACG 59.313 38.462 0.00 0.00 37.91 4.94
2417 2558 6.972901 GGCATAAGCTCTTTGTAAATAACCAC 59.027 38.462 0.00 0.00 41.70 4.16
2418 2559 6.096282 GGGCATAAGCTCTTTGTAAATAACCA 59.904 38.462 0.00 0.00 38.57 3.67
2419 2560 6.504398 GGGCATAAGCTCTTTGTAAATAACC 58.496 40.000 0.00 0.00 38.57 2.85
2420 2561 6.199393 CGGGCATAAGCTCTTTGTAAATAAC 58.801 40.000 0.00 0.00 39.85 1.89
2421 2562 5.220970 GCGGGCATAAGCTCTTTGTAAATAA 60.221 40.000 0.00 0.00 39.85 1.40
2422 2563 4.274950 GCGGGCATAAGCTCTTTGTAAATA 59.725 41.667 0.00 0.00 39.85 1.40
2423 2564 3.066760 GCGGGCATAAGCTCTTTGTAAAT 59.933 43.478 0.00 0.00 39.85 1.40
2424 2565 2.422127 GCGGGCATAAGCTCTTTGTAAA 59.578 45.455 0.00 0.00 39.85 2.01
2425 2566 2.014128 GCGGGCATAAGCTCTTTGTAA 58.986 47.619 0.00 0.00 39.85 2.41
2426 2567 1.209504 AGCGGGCATAAGCTCTTTGTA 59.790 47.619 0.00 0.00 39.98 2.41
2427 2568 0.035056 AGCGGGCATAAGCTCTTTGT 60.035 50.000 0.00 0.00 39.98 2.83
2428 2569 1.098050 AAGCGGGCATAAGCTCTTTG 58.902 50.000 0.00 0.00 43.78 2.77
2429 2570 1.098050 CAAGCGGGCATAAGCTCTTT 58.902 50.000 0.00 0.00 43.78 2.52
2430 2571 2.785868 CAAGCGGGCATAAGCTCTT 58.214 52.632 0.00 0.00 43.78 2.85
2431 2572 4.547859 CAAGCGGGCATAAGCTCT 57.452 55.556 0.00 0.00 43.78 4.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.