Multiple sequence alignment - TraesCS4A01G318500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G318500 chr4A 100.000 2520 0 0 1 2520 607375938 607373419 0.000000e+00 4654
1 TraesCS4A01G318500 chr4A 95.911 1932 55 9 599 2520 635912440 635914357 0.000000e+00 3109
2 TraesCS4A01G318500 chr5A 97.098 1930 45 11 599 2520 501883893 501885819 0.000000e+00 3243
3 TraesCS4A01G318500 chr2A 97.094 1927 50 6 596 2520 54215530 54217452 0.000000e+00 3243
4 TraesCS4A01G318500 chr2A 96.419 1927 55 10 595 2511 705927061 705928983 0.000000e+00 3164
5 TraesCS4A01G318500 chr2A 93.512 1942 59 22 600 2520 24524300 24522405 0.000000e+00 2826
6 TraesCS4A01G318500 chr2A 99.000 100 1 0 2421 2520 653286617 653286716 1.990000e-41 180
7 TraesCS4A01G318500 chr7A 96.932 1923 55 4 599 2520 682767876 682765957 0.000000e+00 3221
8 TraesCS4A01G318500 chr7A 96.691 1934 53 8 596 2520 67534529 67536460 0.000000e+00 3206
9 TraesCS4A01G318500 chr7A 95.859 1932 58 13 598 2520 692142020 692140102 0.000000e+00 3105
10 TraesCS4A01G318500 chr7A 96.602 1442 47 2 599 2039 10841553 10840113 0.000000e+00 2390
11 TraesCS4A01G318500 chr7A 88.725 612 21 9 1 600 94135173 94134598 0.000000e+00 704
12 TraesCS4A01G318500 chr6A 96.883 1925 55 5 599 2520 47685614 47687536 0.000000e+00 3217
13 TraesCS4A01G318500 chr7D 91.503 612 26 4 1 600 421488951 421488354 0.000000e+00 819
14 TraesCS4A01G318500 chr3A 91.475 610 26 2 1 598 164908306 164908901 0.000000e+00 815
15 TraesCS4A01G318500 chr2B 90.196 612 34 2 1 600 692153077 692152480 0.000000e+00 774
16 TraesCS4A01G318500 chr3B 90.501 579 29 8 34 600 779116729 779117293 0.000000e+00 741


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G318500 chr4A 607373419 607375938 2519 True 4654 4654 100.000 1 2520 1 chr4A.!!$R1 2519
1 TraesCS4A01G318500 chr4A 635912440 635914357 1917 False 3109 3109 95.911 599 2520 1 chr4A.!!$F1 1921
2 TraesCS4A01G318500 chr5A 501883893 501885819 1926 False 3243 3243 97.098 599 2520 1 chr5A.!!$F1 1921
3 TraesCS4A01G318500 chr2A 54215530 54217452 1922 False 3243 3243 97.094 596 2520 1 chr2A.!!$F1 1924
4 TraesCS4A01G318500 chr2A 705927061 705928983 1922 False 3164 3164 96.419 595 2511 1 chr2A.!!$F3 1916
5 TraesCS4A01G318500 chr2A 24522405 24524300 1895 True 2826 2826 93.512 600 2520 1 chr2A.!!$R1 1920
6 TraesCS4A01G318500 chr7A 682765957 682767876 1919 True 3221 3221 96.932 599 2520 1 chr7A.!!$R3 1921
7 TraesCS4A01G318500 chr7A 67534529 67536460 1931 False 3206 3206 96.691 596 2520 1 chr7A.!!$F1 1924
8 TraesCS4A01G318500 chr7A 692140102 692142020 1918 True 3105 3105 95.859 598 2520 1 chr7A.!!$R4 1922
9 TraesCS4A01G318500 chr7A 10840113 10841553 1440 True 2390 2390 96.602 599 2039 1 chr7A.!!$R1 1440
10 TraesCS4A01G318500 chr7A 94134598 94135173 575 True 704 704 88.725 1 600 1 chr7A.!!$R2 599
11 TraesCS4A01G318500 chr6A 47685614 47687536 1922 False 3217 3217 96.883 599 2520 1 chr6A.!!$F1 1921
12 TraesCS4A01G318500 chr7D 421488354 421488951 597 True 819 819 91.503 1 600 1 chr7D.!!$R1 599
13 TraesCS4A01G318500 chr3A 164908306 164908901 595 False 815 815 91.475 1 598 1 chr3A.!!$F1 597
14 TraesCS4A01G318500 chr2B 692152480 692153077 597 True 774 774 90.196 1 600 1 chr2B.!!$R1 599
15 TraesCS4A01G318500 chr3B 779116729 779117293 564 False 741 741 90.501 34 600 1 chr3B.!!$F1 566

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
511 524 0.032952 GACTTACCGGTGCACTCACA 59.967 55.0 19.93 0.0 44.87 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2032 2100 3.85424 CGGACACGATAGCTTATGCATAG 59.146 47.826 6.5 2.95 44.6 2.23 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 4.329528 GTCTCTGAACTGCTGAATCATCAC 59.670 45.833 0.00 0.00 0.00 3.06
85 86 8.360390 GGGACAAGATTAATCAACACTTTCTTT 58.640 33.333 17.56 0.00 0.00 2.52
131 132 2.693267 ATTAGACTGTTTCCTCGGGC 57.307 50.000 0.00 0.00 0.00 6.13
132 133 1.640917 TTAGACTGTTTCCTCGGGCT 58.359 50.000 0.00 0.00 35.97 5.19
133 134 0.895530 TAGACTGTTTCCTCGGGCTG 59.104 55.000 0.00 0.00 33.62 4.85
134 135 1.376037 GACTGTTTCCTCGGGCTGG 60.376 63.158 0.00 0.00 0.00 4.85
135 136 1.827399 GACTGTTTCCTCGGGCTGGA 61.827 60.000 0.00 0.00 0.00 3.86
136 137 1.078848 CTGTTTCCTCGGGCTGGAG 60.079 63.158 0.00 0.00 34.76 3.86
137 138 1.535444 TGTTTCCTCGGGCTGGAGA 60.535 57.895 7.53 0.00 36.08 3.71
138 139 1.219393 GTTTCCTCGGGCTGGAGAG 59.781 63.158 7.53 1.32 36.08 3.20
139 140 1.229209 TTTCCTCGGGCTGGAGAGT 60.229 57.895 7.53 0.00 36.08 3.24
140 141 1.544825 TTTCCTCGGGCTGGAGAGTG 61.545 60.000 7.53 0.00 36.08 3.51
141 142 3.465403 CCTCGGGCTGGAGAGTGG 61.465 72.222 7.53 0.00 36.08 4.00
142 143 2.363018 CTCGGGCTGGAGAGTGGA 60.363 66.667 0.00 0.00 36.08 4.02
143 144 2.363018 TCGGGCTGGAGAGTGGAG 60.363 66.667 0.00 0.00 0.00 3.86
144 145 2.363018 CGGGCTGGAGAGTGGAGA 60.363 66.667 0.00 0.00 0.00 3.71
150 151 1.930251 CTGGAGAGTGGAGACTGGAA 58.070 55.000 0.00 0.00 30.16 3.53
174 175 3.171828 TTTGTCGCTTGGGCTCCGA 62.172 57.895 0.00 0.00 36.09 4.55
261 262 4.093291 AGGCCTCAAGCAGCTCCG 62.093 66.667 0.00 0.00 46.50 4.63
389 402 8.570068 AAGTTAAAAGACACCTGAAAGTTACA 57.430 30.769 0.00 0.00 0.00 2.41
390 403 8.209917 AGTTAAAAGACACCTGAAAGTTACAG 57.790 34.615 0.00 0.00 35.43 2.74
391 404 5.500645 AAAAGACACCTGAAAGTTACAGC 57.499 39.130 0.00 0.00 34.47 4.40
392 405 3.838244 AGACACCTGAAAGTTACAGCA 57.162 42.857 0.00 0.00 34.47 4.41
393 406 4.150897 AGACACCTGAAAGTTACAGCAA 57.849 40.909 0.00 0.00 34.47 3.91
394 407 4.718961 AGACACCTGAAAGTTACAGCAAT 58.281 39.130 0.00 0.00 34.47 3.56
395 408 4.757149 AGACACCTGAAAGTTACAGCAATC 59.243 41.667 0.00 0.00 34.47 2.67
396 409 4.718961 ACACCTGAAAGTTACAGCAATCT 58.281 39.130 0.00 0.00 34.47 2.40
397 410 4.516698 ACACCTGAAAGTTACAGCAATCTG 59.483 41.667 0.00 0.00 45.71 2.90
407 420 2.469274 CAGCAATCTGTCCAGTCTGT 57.531 50.000 0.00 0.00 35.61 3.41
408 421 2.074576 CAGCAATCTGTCCAGTCTGTG 58.925 52.381 0.00 0.00 35.61 3.66
419 432 2.758736 CAGTCTGTGGAAGGGAAGAG 57.241 55.000 0.00 0.00 0.00 2.85
420 433 1.277557 CAGTCTGTGGAAGGGAAGAGG 59.722 57.143 0.00 0.00 0.00 3.69
421 434 1.150135 AGTCTGTGGAAGGGAAGAGGA 59.850 52.381 0.00 0.00 0.00 3.71
422 435 1.552792 GTCTGTGGAAGGGAAGAGGAG 59.447 57.143 0.00 0.00 0.00 3.69
423 436 0.908198 CTGTGGAAGGGAAGAGGAGG 59.092 60.000 0.00 0.00 0.00 4.30
424 437 0.491823 TGTGGAAGGGAAGAGGAGGA 59.508 55.000 0.00 0.00 0.00 3.71
425 438 0.906066 GTGGAAGGGAAGAGGAGGAC 59.094 60.000 0.00 0.00 0.00 3.85
426 439 0.793617 TGGAAGGGAAGAGGAGGACT 59.206 55.000 0.00 0.00 0.00 3.85
427 440 1.273324 TGGAAGGGAAGAGGAGGACTC 60.273 57.143 0.00 0.00 46.98 3.36
443 456 3.679389 GGACTCATTCCATGTGTTCTGT 58.321 45.455 0.00 0.00 45.10 3.41
444 457 4.074970 GGACTCATTCCATGTGTTCTGTT 58.925 43.478 0.00 0.00 45.10 3.16
445 458 4.154918 GGACTCATTCCATGTGTTCTGTTC 59.845 45.833 0.00 0.00 45.10 3.18
446 459 4.717877 ACTCATTCCATGTGTTCTGTTCA 58.282 39.130 0.00 0.00 33.61 3.18
447 460 5.319453 ACTCATTCCATGTGTTCTGTTCAT 58.681 37.500 0.00 0.00 33.61 2.57
448 461 5.182570 ACTCATTCCATGTGTTCTGTTCATG 59.817 40.000 0.00 0.00 38.72 3.07
449 462 3.921119 TTCCATGTGTTCTGTTCATGC 57.079 42.857 0.00 0.00 37.99 4.06
450 463 2.861274 TCCATGTGTTCTGTTCATGCA 58.139 42.857 0.00 0.00 37.99 3.96
451 464 3.220940 TCCATGTGTTCTGTTCATGCAA 58.779 40.909 0.00 0.00 37.99 4.08
452 465 3.004629 TCCATGTGTTCTGTTCATGCAAC 59.995 43.478 0.00 0.00 37.99 4.17
453 466 3.311106 CATGTGTTCTGTTCATGCAACC 58.689 45.455 0.00 0.00 33.81 3.77
454 467 2.373224 TGTGTTCTGTTCATGCAACCA 58.627 42.857 0.00 0.00 33.51 3.67
455 468 2.957680 TGTGTTCTGTTCATGCAACCAT 59.042 40.909 0.00 0.00 33.51 3.55
469 482 3.957671 CAACCATGCAGTACAGCTATG 57.042 47.619 11.81 12.22 34.99 2.23
470 483 2.615447 CAACCATGCAGTACAGCTATGG 59.385 50.000 25.70 25.70 43.06 2.74
471 484 2.118679 ACCATGCAGTACAGCTATGGA 58.881 47.619 30.12 10.91 41.53 3.41
472 485 2.707791 ACCATGCAGTACAGCTATGGAT 59.292 45.455 30.12 19.34 41.53 3.41
473 486 3.903714 ACCATGCAGTACAGCTATGGATA 59.096 43.478 30.12 7.43 41.53 2.59
474 487 4.020751 ACCATGCAGTACAGCTATGGATAG 60.021 45.833 30.12 15.44 41.53 2.08
492 505 3.416955 GCAATGGCGTAAGTTTGGG 57.583 52.632 0.00 0.00 41.68 4.12
493 506 0.885196 GCAATGGCGTAAGTTTGGGA 59.115 50.000 0.00 0.00 41.68 4.37
494 507 1.402325 GCAATGGCGTAAGTTTGGGAC 60.402 52.381 0.00 0.00 41.68 4.46
495 508 2.159382 CAATGGCGTAAGTTTGGGACT 58.841 47.619 0.00 0.00 41.47 3.85
497 510 3.706600 ATGGCGTAAGTTTGGGACTTA 57.293 42.857 0.00 0.00 46.61 2.24
503 516 2.265589 AAGTTTGGGACTTACCGGTG 57.734 50.000 19.93 3.27 46.61 4.94
504 517 0.250597 AGTTTGGGACTTACCGGTGC 60.251 55.000 19.93 3.52 40.11 5.01
505 518 0.535553 GTTTGGGACTTACCGGTGCA 60.536 55.000 19.93 2.12 40.11 4.57
506 519 0.535553 TTTGGGACTTACCGGTGCAC 60.536 55.000 19.93 8.80 40.11 4.57
507 520 1.412453 TTGGGACTTACCGGTGCACT 61.412 55.000 19.93 0.00 40.11 4.40
508 521 1.079336 GGGACTTACCGGTGCACTC 60.079 63.158 19.93 6.10 40.11 3.51
509 522 1.669440 GGACTTACCGGTGCACTCA 59.331 57.895 19.93 0.00 0.00 3.41
510 523 0.669625 GGACTTACCGGTGCACTCAC 60.670 60.000 19.93 0.00 42.40 3.51
511 524 0.032952 GACTTACCGGTGCACTCACA 59.967 55.000 19.93 0.00 44.87 3.58
512 525 0.033504 ACTTACCGGTGCACTCACAG 59.966 55.000 19.93 9.15 44.87 3.66
513 526 0.317160 CTTACCGGTGCACTCACAGA 59.683 55.000 19.93 0.00 44.87 3.41
514 527 0.973632 TTACCGGTGCACTCACAGAT 59.026 50.000 19.93 0.00 44.87 2.90
515 528 0.973632 TACCGGTGCACTCACAGATT 59.026 50.000 19.93 0.00 44.87 2.40
516 529 0.973632 ACCGGTGCACTCACAGATTA 59.026 50.000 17.98 0.00 44.87 1.75
517 530 1.346395 ACCGGTGCACTCACAGATTAA 59.654 47.619 17.98 0.00 44.87 1.40
518 531 2.224426 ACCGGTGCACTCACAGATTAAA 60.224 45.455 17.98 0.00 44.87 1.52
519 532 2.811431 CCGGTGCACTCACAGATTAAAA 59.189 45.455 17.98 0.00 44.87 1.52
520 533 3.252215 CCGGTGCACTCACAGATTAAAAA 59.748 43.478 17.98 0.00 44.87 1.94
521 534 4.082787 CCGGTGCACTCACAGATTAAAAAT 60.083 41.667 17.98 0.00 44.87 1.82
522 535 4.853196 CGGTGCACTCACAGATTAAAAATG 59.147 41.667 17.98 0.00 44.87 2.32
523 536 5.562696 CGGTGCACTCACAGATTAAAAATGT 60.563 40.000 17.98 0.00 44.87 2.71
524 537 6.215845 GGTGCACTCACAGATTAAAAATGTT 58.784 36.000 17.98 0.00 44.87 2.71
525 538 6.144402 GGTGCACTCACAGATTAAAAATGTTG 59.856 38.462 17.98 0.00 44.87 3.33
526 539 6.144402 GTGCACTCACAGATTAAAAATGTTGG 59.856 38.462 10.32 0.00 42.66 3.77
527 540 6.183360 TGCACTCACAGATTAAAAATGTTGGT 60.183 34.615 0.00 0.00 0.00 3.67
528 541 6.363357 GCACTCACAGATTAAAAATGTTGGTC 59.637 38.462 0.00 0.00 0.00 4.02
529 542 6.578545 CACTCACAGATTAAAAATGTTGGTCG 59.421 38.462 0.00 0.00 0.00 4.79
530 543 6.007936 TCACAGATTAAAAATGTTGGTCGG 57.992 37.500 0.00 0.00 0.00 4.79
531 544 5.048364 TCACAGATTAAAAATGTTGGTCGGG 60.048 40.000 0.00 0.00 0.00 5.14
532 545 5.048364 CACAGATTAAAAATGTTGGTCGGGA 60.048 40.000 0.00 0.00 0.00 5.14
533 546 5.714806 ACAGATTAAAAATGTTGGTCGGGAT 59.285 36.000 0.00 0.00 0.00 3.85
534 547 6.210584 ACAGATTAAAAATGTTGGTCGGGATT 59.789 34.615 0.00 0.00 0.00 3.01
535 548 6.531240 CAGATTAAAAATGTTGGTCGGGATTG 59.469 38.462 0.00 0.00 0.00 2.67
536 549 3.676291 AAAAATGTTGGTCGGGATTGG 57.324 42.857 0.00 0.00 0.00 3.16
537 550 1.555967 AAATGTTGGTCGGGATTGGG 58.444 50.000 0.00 0.00 0.00 4.12
538 551 0.407918 AATGTTGGTCGGGATTGGGT 59.592 50.000 0.00 0.00 0.00 4.51
539 552 0.407918 ATGTTGGTCGGGATTGGGTT 59.592 50.000 0.00 0.00 0.00 4.11
540 553 0.186386 TGTTGGTCGGGATTGGGTTT 59.814 50.000 0.00 0.00 0.00 3.27
541 554 1.334160 GTTGGTCGGGATTGGGTTTT 58.666 50.000 0.00 0.00 0.00 2.43
542 555 2.158505 TGTTGGTCGGGATTGGGTTTTA 60.159 45.455 0.00 0.00 0.00 1.52
543 556 2.203470 TGGTCGGGATTGGGTTTTAC 57.797 50.000 0.00 0.00 0.00 2.01
544 557 1.424302 TGGTCGGGATTGGGTTTTACA 59.576 47.619 0.00 0.00 0.00 2.41
545 558 1.814394 GGTCGGGATTGGGTTTTACAC 59.186 52.381 0.00 0.00 0.00 2.90
546 559 2.553685 GGTCGGGATTGGGTTTTACACT 60.554 50.000 0.00 0.00 0.00 3.55
547 560 3.151554 GTCGGGATTGGGTTTTACACTT 58.848 45.455 0.00 0.00 0.00 3.16
548 561 3.057806 GTCGGGATTGGGTTTTACACTTG 60.058 47.826 0.00 0.00 0.00 3.16
549 562 2.230266 CGGGATTGGGTTTTACACTTGG 59.770 50.000 0.00 0.00 0.00 3.61
550 563 3.236047 GGGATTGGGTTTTACACTTGGT 58.764 45.455 0.00 0.00 0.00 3.67
551 564 3.644265 GGGATTGGGTTTTACACTTGGTT 59.356 43.478 0.00 0.00 0.00 3.67
552 565 4.101898 GGGATTGGGTTTTACACTTGGTTT 59.898 41.667 0.00 0.00 0.00 3.27
553 566 5.294356 GGATTGGGTTTTACACTTGGTTTC 58.706 41.667 0.00 0.00 0.00 2.78
554 567 5.069914 GGATTGGGTTTTACACTTGGTTTCT 59.930 40.000 0.00 0.00 0.00 2.52
555 568 4.993029 TGGGTTTTACACTTGGTTTCTG 57.007 40.909 0.00 0.00 0.00 3.02
556 569 4.601084 TGGGTTTTACACTTGGTTTCTGA 58.399 39.130 0.00 0.00 0.00 3.27
557 570 4.642885 TGGGTTTTACACTTGGTTTCTGAG 59.357 41.667 0.00 0.00 0.00 3.35
558 571 4.885325 GGGTTTTACACTTGGTTTCTGAGA 59.115 41.667 0.00 0.00 0.00 3.27
559 572 5.535030 GGGTTTTACACTTGGTTTCTGAGAT 59.465 40.000 0.00 0.00 0.00 2.75
560 573 6.713450 GGGTTTTACACTTGGTTTCTGAGATA 59.287 38.462 0.00 0.00 0.00 1.98
561 574 7.308408 GGGTTTTACACTTGGTTTCTGAGATAC 60.308 40.741 0.00 0.00 0.00 2.24
562 575 7.227910 GGTTTTACACTTGGTTTCTGAGATACA 59.772 37.037 5.45 0.00 0.00 2.29
563 576 8.617809 GTTTTACACTTGGTTTCTGAGATACAA 58.382 33.333 5.45 0.54 0.00 2.41
564 577 7.962964 TTACACTTGGTTTCTGAGATACAAG 57.037 36.000 15.24 15.24 0.00 3.16
565 578 6.174720 ACACTTGGTTTCTGAGATACAAGA 57.825 37.500 20.56 1.90 0.00 3.02
566 579 6.591935 ACACTTGGTTTCTGAGATACAAGAA 58.408 36.000 20.56 5.31 0.00 2.52
567 580 6.708054 ACACTTGGTTTCTGAGATACAAGAAG 59.292 38.462 20.56 13.71 0.00 2.85
568 581 6.931281 CACTTGGTTTCTGAGATACAAGAAGA 59.069 38.462 20.56 0.00 0.00 2.87
569 582 7.605691 CACTTGGTTTCTGAGATACAAGAAGAT 59.394 37.037 20.56 3.65 0.00 2.40
570 583 8.816894 ACTTGGTTTCTGAGATACAAGAAGATA 58.183 33.333 20.56 0.00 0.00 1.98
571 584 9.658799 CTTGGTTTCTGAGATACAAGAAGATAA 57.341 33.333 12.88 0.00 0.00 1.75
572 585 9.658799 TTGGTTTCTGAGATACAAGAAGATAAG 57.341 33.333 5.45 0.00 0.00 1.73
573 586 7.766278 TGGTTTCTGAGATACAAGAAGATAAGC 59.234 37.037 5.45 0.00 0.00 3.09
574 587 7.984617 GGTTTCTGAGATACAAGAAGATAAGCT 59.015 37.037 5.45 0.00 0.00 3.74
575 588 8.816144 GTTTCTGAGATACAAGAAGATAAGCTG 58.184 37.037 0.00 0.00 0.00 4.24
576 589 7.048629 TCTGAGATACAAGAAGATAAGCTGG 57.951 40.000 0.00 0.00 0.00 4.85
577 590 6.609212 TCTGAGATACAAGAAGATAAGCTGGT 59.391 38.462 0.00 0.00 0.00 4.00
578 591 7.124901 TCTGAGATACAAGAAGATAAGCTGGTT 59.875 37.037 0.00 0.00 0.00 3.67
579 592 7.268586 TGAGATACAAGAAGATAAGCTGGTTC 58.731 38.462 0.00 0.00 0.00 3.62
580 593 6.276847 AGATACAAGAAGATAAGCTGGTTCG 58.723 40.000 0.00 0.00 0.00 3.95
581 594 3.600388 ACAAGAAGATAAGCTGGTTCGG 58.400 45.455 0.00 0.00 0.00 4.30
582 595 2.939103 CAAGAAGATAAGCTGGTTCGGG 59.061 50.000 0.00 0.00 0.00 5.14
583 596 2.188817 AGAAGATAAGCTGGTTCGGGT 58.811 47.619 0.00 0.00 0.00 5.28
584 597 2.093447 AGAAGATAAGCTGGTTCGGGTG 60.093 50.000 0.00 0.00 0.00 4.61
585 598 1.568504 AGATAAGCTGGTTCGGGTGA 58.431 50.000 0.00 0.00 0.00 4.02
586 599 2.119495 AGATAAGCTGGTTCGGGTGAT 58.881 47.619 0.00 0.00 0.00 3.06
587 600 2.158900 AGATAAGCTGGTTCGGGTGATG 60.159 50.000 0.00 0.00 0.00 3.07
588 601 1.271856 TAAGCTGGTTCGGGTGATGA 58.728 50.000 0.00 0.00 0.00 2.92
589 602 0.620556 AAGCTGGTTCGGGTGATGAT 59.379 50.000 0.00 0.00 0.00 2.45
590 603 0.107508 AGCTGGTTCGGGTGATGATG 60.108 55.000 0.00 0.00 0.00 3.07
591 604 1.718757 GCTGGTTCGGGTGATGATGC 61.719 60.000 0.00 0.00 0.00 3.91
592 605 1.431488 CTGGTTCGGGTGATGATGCG 61.431 60.000 0.00 0.00 0.00 4.73
593 606 1.449601 GGTTCGGGTGATGATGCGT 60.450 57.895 0.00 0.00 0.00 5.24
745 758 9.743057 CTAATCCAAAGACACATGTTTAAAACA 57.257 29.630 0.00 0.00 46.94 2.83
826 839 3.717294 GGTGAGCGGGACCCACAT 61.717 66.667 12.15 0.00 32.79 3.21
855 868 4.172807 ACCCACTAACTTATCCAGGTCAA 58.827 43.478 0.00 0.00 0.00 3.18
959 983 3.203716 GTTGTTGTTCTTCTTCTCCGGT 58.796 45.455 0.00 0.00 0.00 5.28
1012 1036 1.899814 ACCTAGCAATGTCGAGTTCCA 59.100 47.619 0.00 0.00 0.00 3.53
1127 1151 2.131972 CACAACGACCGACAAGAATGA 58.868 47.619 0.00 0.00 0.00 2.57
1908 1971 6.697395 TGATAAAAGAAGTGTAGCTAGTGCA 58.303 36.000 0.00 0.00 42.74 4.57
1909 1972 7.158697 TGATAAAAGAAGTGTAGCTAGTGCAA 58.841 34.615 0.00 0.00 42.74 4.08
2320 2396 4.345257 GCATCTCCTTACAACATAGAGGGA 59.655 45.833 0.00 0.00 0.00 4.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 1.077716 GTCCCAATCCCAAGTCCCG 60.078 63.158 0.00 0.00 0.00 5.14
131 132 1.930251 TTCCAGTCTCCACTCTCCAG 58.070 55.000 0.00 0.00 0.00 3.86
132 133 2.251818 CTTTCCAGTCTCCACTCTCCA 58.748 52.381 0.00 0.00 0.00 3.86
133 134 1.552792 CCTTTCCAGTCTCCACTCTCC 59.447 57.143 0.00 0.00 0.00 3.71
134 135 2.232696 GTCCTTTCCAGTCTCCACTCTC 59.767 54.545 0.00 0.00 0.00 3.20
135 136 2.158234 AGTCCTTTCCAGTCTCCACTCT 60.158 50.000 0.00 0.00 0.00 3.24
136 137 2.252714 AGTCCTTTCCAGTCTCCACTC 58.747 52.381 0.00 0.00 0.00 3.51
137 138 2.407340 AGTCCTTTCCAGTCTCCACT 57.593 50.000 0.00 0.00 0.00 4.00
138 139 3.142174 CAAAGTCCTTTCCAGTCTCCAC 58.858 50.000 0.00 0.00 0.00 4.02
139 140 2.777692 ACAAAGTCCTTTCCAGTCTCCA 59.222 45.455 0.00 0.00 0.00 3.86
140 141 3.403968 GACAAAGTCCTTTCCAGTCTCC 58.596 50.000 0.00 0.00 0.00 3.71
141 142 3.060602 CGACAAAGTCCTTTCCAGTCTC 58.939 50.000 6.98 0.00 0.00 3.36
142 143 2.807108 GCGACAAAGTCCTTTCCAGTCT 60.807 50.000 0.00 0.00 0.00 3.24
143 144 1.531578 GCGACAAAGTCCTTTCCAGTC 59.468 52.381 0.00 0.00 0.00 3.51
144 145 1.141053 AGCGACAAAGTCCTTTCCAGT 59.859 47.619 0.00 0.00 0.00 4.00
150 151 1.172812 GCCCAAGCGACAAAGTCCTT 61.173 55.000 0.00 0.00 0.00 3.36
174 175 6.273071 GCATTGTAAACACTCCACTTTTCTT 58.727 36.000 0.00 0.00 0.00 2.52
261 262 1.573108 TCTCTTGTCCCATCTGGTCC 58.427 55.000 0.00 0.00 34.77 4.46
388 401 3.191766 CCACAGACTGGACAGATTGCTG 61.192 54.545 7.51 9.68 43.95 4.41
389 402 1.002888 CCACAGACTGGACAGATTGCT 59.997 52.381 7.51 0.00 43.95 3.91
390 403 1.002430 TCCACAGACTGGACAGATTGC 59.998 52.381 7.51 0.00 44.99 3.56
399 412 1.277557 CTCTTCCCTTCCACAGACTGG 59.722 57.143 7.51 0.00 42.29 4.00
400 413 1.277557 CCTCTTCCCTTCCACAGACTG 59.722 57.143 0.00 0.00 0.00 3.51
401 414 1.150135 TCCTCTTCCCTTCCACAGACT 59.850 52.381 0.00 0.00 0.00 3.24
402 415 1.552792 CTCCTCTTCCCTTCCACAGAC 59.447 57.143 0.00 0.00 0.00 3.51
403 416 1.553417 CCTCCTCTTCCCTTCCACAGA 60.553 57.143 0.00 0.00 0.00 3.41
404 417 0.908198 CCTCCTCTTCCCTTCCACAG 59.092 60.000 0.00 0.00 0.00 3.66
405 418 0.491823 TCCTCCTCTTCCCTTCCACA 59.508 55.000 0.00 0.00 0.00 4.17
406 419 0.906066 GTCCTCCTCTTCCCTTCCAC 59.094 60.000 0.00 0.00 0.00 4.02
407 420 0.793617 AGTCCTCCTCTTCCCTTCCA 59.206 55.000 0.00 0.00 0.00 3.53
408 421 1.273324 TGAGTCCTCCTCTTCCCTTCC 60.273 57.143 0.00 0.00 41.11 3.46
409 422 2.239681 TGAGTCCTCCTCTTCCCTTC 57.760 55.000 0.00 0.00 41.11 3.46
410 423 2.959421 ATGAGTCCTCCTCTTCCCTT 57.041 50.000 0.00 0.00 41.11 3.95
411 424 2.628290 GGAATGAGTCCTCCTCTTCCCT 60.628 54.545 0.00 0.00 43.98 4.20
412 425 1.765904 GGAATGAGTCCTCCTCTTCCC 59.234 57.143 0.00 0.00 43.98 3.97
428 441 3.827876 TGCATGAACAGAACACATGGAAT 59.172 39.130 0.00 0.00 38.84 3.01
429 442 3.220940 TGCATGAACAGAACACATGGAA 58.779 40.909 0.00 0.00 38.84 3.53
430 443 2.861274 TGCATGAACAGAACACATGGA 58.139 42.857 0.00 0.00 40.83 3.41
431 444 3.311106 GTTGCATGAACAGAACACATGG 58.689 45.455 0.00 0.00 40.83 3.66
432 445 3.243468 TGGTTGCATGAACAGAACACATG 60.243 43.478 0.00 0.00 42.60 3.21
433 446 2.957680 TGGTTGCATGAACAGAACACAT 59.042 40.909 0.00 0.00 36.12 3.21
434 447 2.373224 TGGTTGCATGAACAGAACACA 58.627 42.857 0.00 0.00 36.12 3.72
435 448 3.311106 CATGGTTGCATGAACAGAACAC 58.689 45.455 0.00 0.00 36.12 3.32
436 449 3.646611 CATGGTTGCATGAACAGAACA 57.353 42.857 0.00 0.00 36.12 3.18
449 462 2.615447 CCATAGCTGTACTGCATGGTTG 59.385 50.000 28.18 18.18 37.12 3.77
450 463 2.505407 TCCATAGCTGTACTGCATGGTT 59.495 45.455 31.19 16.74 39.86 3.67
451 464 2.118679 TCCATAGCTGTACTGCATGGT 58.881 47.619 31.19 17.00 39.86 3.55
452 465 2.916702 TCCATAGCTGTACTGCATGG 57.083 50.000 29.35 29.35 40.06 3.66
465 478 4.569943 ACTTACGCCATTGCTATCCATAG 58.430 43.478 0.00 0.00 34.43 2.23
466 479 4.617253 ACTTACGCCATTGCTATCCATA 57.383 40.909 0.00 0.00 34.43 2.74
467 480 3.492102 ACTTACGCCATTGCTATCCAT 57.508 42.857 0.00 0.00 34.43 3.41
468 481 3.275617 AACTTACGCCATTGCTATCCA 57.724 42.857 0.00 0.00 34.43 3.41
469 482 3.243068 CCAAACTTACGCCATTGCTATCC 60.243 47.826 0.00 0.00 34.43 2.59
470 483 3.243068 CCCAAACTTACGCCATTGCTATC 60.243 47.826 0.00 0.00 34.43 2.08
471 484 2.687935 CCCAAACTTACGCCATTGCTAT 59.312 45.455 0.00 0.00 34.43 2.97
472 485 2.088423 CCCAAACTTACGCCATTGCTA 58.912 47.619 0.00 0.00 34.43 3.49
473 486 0.887933 CCCAAACTTACGCCATTGCT 59.112 50.000 0.00 0.00 34.43 3.91
474 487 0.885196 TCCCAAACTTACGCCATTGC 59.115 50.000 0.00 0.00 0.00 3.56
475 488 2.159382 AGTCCCAAACTTACGCCATTG 58.841 47.619 0.00 0.00 33.03 2.82
476 489 2.579410 AGTCCCAAACTTACGCCATT 57.421 45.000 0.00 0.00 33.03 3.16
477 490 2.579410 AAGTCCCAAACTTACGCCAT 57.421 45.000 0.00 0.00 46.55 4.40
483 496 2.550639 GCACCGGTAAGTCCCAAACTTA 60.551 50.000 6.87 0.00 46.55 2.24
485 498 0.250597 GCACCGGTAAGTCCCAAACT 60.251 55.000 6.87 0.00 41.10 2.66
486 499 0.535553 TGCACCGGTAAGTCCCAAAC 60.536 55.000 6.87 0.00 0.00 2.93
487 500 0.535553 GTGCACCGGTAAGTCCCAAA 60.536 55.000 6.87 0.00 0.00 3.28
488 501 1.071814 GTGCACCGGTAAGTCCCAA 59.928 57.895 6.87 0.00 0.00 4.12
489 502 1.823169 GAGTGCACCGGTAAGTCCCA 61.823 60.000 14.63 0.00 0.00 4.37
490 503 1.079336 GAGTGCACCGGTAAGTCCC 60.079 63.158 14.63 0.00 0.00 4.46
491 504 0.669625 GTGAGTGCACCGGTAAGTCC 60.670 60.000 14.63 2.26 39.14 3.85
492 505 0.032952 TGTGAGTGCACCGGTAAGTC 59.967 55.000 14.63 12.06 44.51 3.01
493 506 0.033504 CTGTGAGTGCACCGGTAAGT 59.966 55.000 14.63 0.56 44.51 2.24
494 507 0.317160 TCTGTGAGTGCACCGGTAAG 59.683 55.000 14.63 5.54 44.51 2.34
495 508 0.973632 ATCTGTGAGTGCACCGGTAA 59.026 50.000 14.63 0.00 44.51 2.85
496 509 0.973632 AATCTGTGAGTGCACCGGTA 59.026 50.000 14.63 0.00 44.51 4.02
497 510 0.973632 TAATCTGTGAGTGCACCGGT 59.026 50.000 14.63 0.00 44.51 5.28
498 511 2.093306 TTAATCTGTGAGTGCACCGG 57.907 50.000 14.63 0.00 44.51 5.28
499 512 4.481930 TTTTTAATCTGTGAGTGCACCG 57.518 40.909 14.63 0.00 44.51 4.94
500 513 5.772521 ACATTTTTAATCTGTGAGTGCACC 58.227 37.500 14.63 5.76 44.51 5.01
501 514 6.144402 CCAACATTTTTAATCTGTGAGTGCAC 59.856 38.462 9.40 9.40 45.35 4.57
502 515 6.183360 ACCAACATTTTTAATCTGTGAGTGCA 60.183 34.615 0.00 0.00 0.00 4.57
503 516 6.215845 ACCAACATTTTTAATCTGTGAGTGC 58.784 36.000 0.00 0.00 0.00 4.40
504 517 6.578545 CGACCAACATTTTTAATCTGTGAGTG 59.421 38.462 0.00 0.00 0.00 3.51
505 518 6.293955 CCGACCAACATTTTTAATCTGTGAGT 60.294 38.462 0.00 0.00 0.00 3.41
506 519 6.086222 CCGACCAACATTTTTAATCTGTGAG 58.914 40.000 0.00 0.00 0.00 3.51
507 520 5.048364 CCCGACCAACATTTTTAATCTGTGA 60.048 40.000 0.00 0.00 0.00 3.58
508 521 5.048364 TCCCGACCAACATTTTTAATCTGTG 60.048 40.000 0.00 0.00 0.00 3.66
509 522 5.074115 TCCCGACCAACATTTTTAATCTGT 58.926 37.500 0.00 0.00 0.00 3.41
510 523 5.637006 TCCCGACCAACATTTTTAATCTG 57.363 39.130 0.00 0.00 0.00 2.90
511 524 6.350949 CCAATCCCGACCAACATTTTTAATCT 60.351 38.462 0.00 0.00 0.00 2.40
512 525 5.810074 CCAATCCCGACCAACATTTTTAATC 59.190 40.000 0.00 0.00 0.00 1.75
513 526 5.337975 CCCAATCCCGACCAACATTTTTAAT 60.338 40.000 0.00 0.00 0.00 1.40
514 527 4.021016 CCCAATCCCGACCAACATTTTTAA 60.021 41.667 0.00 0.00 0.00 1.52
515 528 3.511934 CCCAATCCCGACCAACATTTTTA 59.488 43.478 0.00 0.00 0.00 1.52
516 529 2.301583 CCCAATCCCGACCAACATTTTT 59.698 45.455 0.00 0.00 0.00 1.94
517 530 1.899142 CCCAATCCCGACCAACATTTT 59.101 47.619 0.00 0.00 0.00 1.82
518 531 1.203125 ACCCAATCCCGACCAACATTT 60.203 47.619 0.00 0.00 0.00 2.32
519 532 0.407918 ACCCAATCCCGACCAACATT 59.592 50.000 0.00 0.00 0.00 2.71
520 533 0.407918 AACCCAATCCCGACCAACAT 59.592 50.000 0.00 0.00 0.00 2.71
521 534 0.186386 AAACCCAATCCCGACCAACA 59.814 50.000 0.00 0.00 0.00 3.33
522 535 1.334160 AAAACCCAATCCCGACCAAC 58.666 50.000 0.00 0.00 0.00 3.77
523 536 2.158505 TGTAAAACCCAATCCCGACCAA 60.159 45.455 0.00 0.00 0.00 3.67
524 537 1.424302 TGTAAAACCCAATCCCGACCA 59.576 47.619 0.00 0.00 0.00 4.02
525 538 1.814394 GTGTAAAACCCAATCCCGACC 59.186 52.381 0.00 0.00 0.00 4.79
526 539 2.786777 AGTGTAAAACCCAATCCCGAC 58.213 47.619 0.00 0.00 0.00 4.79
527 540 3.150767 CAAGTGTAAAACCCAATCCCGA 58.849 45.455 0.00 0.00 0.00 5.14
528 541 2.230266 CCAAGTGTAAAACCCAATCCCG 59.770 50.000 0.00 0.00 0.00 5.14
529 542 3.236047 ACCAAGTGTAAAACCCAATCCC 58.764 45.455 0.00 0.00 0.00 3.85
530 543 4.948341 AACCAAGTGTAAAACCCAATCC 57.052 40.909 0.00 0.00 0.00 3.01
531 544 5.983118 CAGAAACCAAGTGTAAAACCCAATC 59.017 40.000 0.00 0.00 0.00 2.67
532 545 5.659079 TCAGAAACCAAGTGTAAAACCCAAT 59.341 36.000 0.00 0.00 0.00 3.16
533 546 5.017490 TCAGAAACCAAGTGTAAAACCCAA 58.983 37.500 0.00 0.00 0.00 4.12
534 547 4.601084 TCAGAAACCAAGTGTAAAACCCA 58.399 39.130 0.00 0.00 0.00 4.51
535 548 4.885325 TCTCAGAAACCAAGTGTAAAACCC 59.115 41.667 0.00 0.00 0.00 4.11
536 549 6.635030 ATCTCAGAAACCAAGTGTAAAACC 57.365 37.500 0.00 0.00 0.00 3.27
537 550 8.149973 TGTATCTCAGAAACCAAGTGTAAAAC 57.850 34.615 0.00 0.00 0.00 2.43
538 551 8.740123 TTGTATCTCAGAAACCAAGTGTAAAA 57.260 30.769 0.00 0.00 0.00 1.52
539 552 8.208224 TCTTGTATCTCAGAAACCAAGTGTAAA 58.792 33.333 9.79 0.00 33.00 2.01
540 553 7.732025 TCTTGTATCTCAGAAACCAAGTGTAA 58.268 34.615 9.79 0.00 33.00 2.41
541 554 7.297936 TCTTGTATCTCAGAAACCAAGTGTA 57.702 36.000 9.79 0.00 33.00 2.90
542 555 6.174720 TCTTGTATCTCAGAAACCAAGTGT 57.825 37.500 9.79 0.00 33.00 3.55
543 556 6.931281 TCTTCTTGTATCTCAGAAACCAAGTG 59.069 38.462 9.79 6.23 33.00 3.16
544 557 7.067496 TCTTCTTGTATCTCAGAAACCAAGT 57.933 36.000 9.79 0.00 33.00 3.16
545 558 9.658799 TTATCTTCTTGTATCTCAGAAACCAAG 57.341 33.333 5.41 5.41 0.00 3.61
546 559 9.658799 CTTATCTTCTTGTATCTCAGAAACCAA 57.341 33.333 0.00 0.00 0.00 3.67
547 560 7.766278 GCTTATCTTCTTGTATCTCAGAAACCA 59.234 37.037 0.00 0.00 0.00 3.67
548 561 7.984617 AGCTTATCTTCTTGTATCTCAGAAACC 59.015 37.037 0.00 0.00 0.00 3.27
549 562 8.816144 CAGCTTATCTTCTTGTATCTCAGAAAC 58.184 37.037 0.00 0.00 0.00 2.78
550 563 7.984050 CCAGCTTATCTTCTTGTATCTCAGAAA 59.016 37.037 0.00 0.00 0.00 2.52
551 564 7.124901 ACCAGCTTATCTTCTTGTATCTCAGAA 59.875 37.037 0.00 0.00 0.00 3.02
552 565 6.609212 ACCAGCTTATCTTCTTGTATCTCAGA 59.391 38.462 0.00 0.00 0.00 3.27
553 566 6.815089 ACCAGCTTATCTTCTTGTATCTCAG 58.185 40.000 0.00 0.00 0.00 3.35
554 567 6.798427 ACCAGCTTATCTTCTTGTATCTCA 57.202 37.500 0.00 0.00 0.00 3.27
555 568 6.419413 CGAACCAGCTTATCTTCTTGTATCTC 59.581 42.308 0.00 0.00 0.00 2.75
556 569 6.276847 CGAACCAGCTTATCTTCTTGTATCT 58.723 40.000 0.00 0.00 0.00 1.98
557 570 5.463724 CCGAACCAGCTTATCTTCTTGTATC 59.536 44.000 0.00 0.00 0.00 2.24
558 571 5.360591 CCGAACCAGCTTATCTTCTTGTAT 58.639 41.667 0.00 0.00 0.00 2.29
559 572 4.382685 CCCGAACCAGCTTATCTTCTTGTA 60.383 45.833 0.00 0.00 0.00 2.41
560 573 3.600388 CCGAACCAGCTTATCTTCTTGT 58.400 45.455 0.00 0.00 0.00 3.16
561 574 2.939103 CCCGAACCAGCTTATCTTCTTG 59.061 50.000 0.00 0.00 0.00 3.02
562 575 2.572104 ACCCGAACCAGCTTATCTTCTT 59.428 45.455 0.00 0.00 0.00 2.52
563 576 2.093447 CACCCGAACCAGCTTATCTTCT 60.093 50.000 0.00 0.00 0.00 2.85
564 577 2.093658 TCACCCGAACCAGCTTATCTTC 60.094 50.000 0.00 0.00 0.00 2.87
565 578 1.906574 TCACCCGAACCAGCTTATCTT 59.093 47.619 0.00 0.00 0.00 2.40
566 579 1.568504 TCACCCGAACCAGCTTATCT 58.431 50.000 0.00 0.00 0.00 1.98
567 580 2.158957 TCATCACCCGAACCAGCTTATC 60.159 50.000 0.00 0.00 0.00 1.75
568 581 1.837439 TCATCACCCGAACCAGCTTAT 59.163 47.619 0.00 0.00 0.00 1.73
569 582 1.271856 TCATCACCCGAACCAGCTTA 58.728 50.000 0.00 0.00 0.00 3.09
570 583 0.620556 ATCATCACCCGAACCAGCTT 59.379 50.000 0.00 0.00 0.00 3.74
571 584 0.107508 CATCATCACCCGAACCAGCT 60.108 55.000 0.00 0.00 0.00 4.24
572 585 1.718757 GCATCATCACCCGAACCAGC 61.719 60.000 0.00 0.00 0.00 4.85
573 586 1.431488 CGCATCATCACCCGAACCAG 61.431 60.000 0.00 0.00 0.00 4.00
574 587 1.449423 CGCATCATCACCCGAACCA 60.449 57.895 0.00 0.00 0.00 3.67
575 588 1.024579 AACGCATCATCACCCGAACC 61.025 55.000 0.00 0.00 0.00 3.62
576 589 0.802494 AAACGCATCATCACCCGAAC 59.198 50.000 0.00 0.00 0.00 3.95
577 590 1.529226 AAAACGCATCATCACCCGAA 58.471 45.000 0.00 0.00 0.00 4.30
578 591 1.198867 CAAAAACGCATCATCACCCGA 59.801 47.619 0.00 0.00 0.00 5.14
579 592 1.616620 CAAAAACGCATCATCACCCG 58.383 50.000 0.00 0.00 0.00 5.28
580 593 1.404047 CCCAAAAACGCATCATCACCC 60.404 52.381 0.00 0.00 0.00 4.61
581 594 1.994916 CCCAAAAACGCATCATCACC 58.005 50.000 0.00 0.00 0.00 4.02
582 595 1.336702 TGCCCAAAAACGCATCATCAC 60.337 47.619 0.00 0.00 0.00 3.06
583 596 0.964700 TGCCCAAAAACGCATCATCA 59.035 45.000 0.00 0.00 0.00 3.07
584 597 2.077413 TTGCCCAAAAACGCATCATC 57.923 45.000 0.00 0.00 34.35 2.92
585 598 2.540265 TTTGCCCAAAAACGCATCAT 57.460 40.000 0.00 0.00 34.35 2.45
586 599 2.540265 ATTTGCCCAAAAACGCATCA 57.460 40.000 0.00 0.00 34.35 3.07
587 600 2.348362 GCTATTTGCCCAAAAACGCATC 59.652 45.455 0.00 0.00 34.35 3.91
588 601 2.028203 AGCTATTTGCCCAAAAACGCAT 60.028 40.909 0.00 0.00 44.23 4.73
589 602 1.342819 AGCTATTTGCCCAAAAACGCA 59.657 42.857 0.00 0.00 44.23 5.24
590 603 1.992667 GAGCTATTTGCCCAAAAACGC 59.007 47.619 0.00 1.81 44.23 4.84
591 604 2.606108 GGAGCTATTTGCCCAAAAACG 58.394 47.619 0.00 0.00 44.23 3.60
592 605 2.972625 GGGAGCTATTTGCCCAAAAAC 58.027 47.619 2.53 0.00 44.23 2.43
745 758 1.982395 TCCCGCTCACCTGATTCGT 60.982 57.895 0.00 0.00 0.00 3.85
826 839 3.714798 GGATAAGTTAGTGGGTCCCATGA 59.285 47.826 15.49 1.71 35.28 3.07
855 868 1.271926 GGTGCCCTCTTGTACCAATGT 60.272 52.381 0.00 0.00 40.37 2.71
1008 1032 3.068881 CGGGAGGCTGAAGTGGAA 58.931 61.111 0.00 0.00 0.00 3.53
1038 1062 2.509336 GGCACTGCGTCATAGCGT 60.509 61.111 0.00 0.00 40.67 5.07
1046 1070 1.968017 CTTGTCATGGGCACTGCGT 60.968 57.895 0.00 0.00 0.00 5.24
1127 1151 0.898326 GAATTCCCGCCCAAGGTTGT 60.898 55.000 0.00 0.00 0.00 3.32
1760 1816 5.427378 TCACTGAAACTGAAACTGATGACA 58.573 37.500 0.00 0.00 0.00 3.58
2032 2100 3.854240 CGGACACGATAGCTTATGCATAG 59.146 47.826 6.50 2.95 44.60 2.23
2188 2259 7.721402 ACACCATAGCACAAGTCAAAAATAAA 58.279 30.769 0.00 0.00 0.00 1.40
2320 2396 5.131977 TGCACTATATGTTGTAAGGGGATGT 59.868 40.000 0.00 0.00 0.00 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.