Multiple sequence alignment - TraesCS4A01G317400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G317400 chr4A 100.000 2438 0 0 1 2438 606649237 606646800 0.000000e+00 4503.0
1 TraesCS4A01G317400 chr5D 90.008 1301 53 27 450 1734 565239522 565238283 0.000000e+00 1611.0
2 TraesCS4A01G317400 chr5D 86.291 817 77 18 789 1593 565257774 565258567 0.000000e+00 856.0
3 TraesCS4A01G317400 chr5D 84.535 666 69 17 1768 2412 565238081 565237429 1.590000e-176 628.0
4 TraesCS4A01G317400 chr5D 85.420 583 58 8 1012 1568 338408349 338408930 4.520000e-162 580.0
5 TraesCS4A01G317400 chr5D 85.077 583 61 7 1012 1568 476457676 476457094 2.720000e-159 571.0
6 TraesCS4A01G317400 chr5D 92.523 214 14 2 23 236 565239780 565239569 3.050000e-79 305.0
7 TraesCS4A01G317400 chr5D 83.415 205 10 11 1475 1668 565234890 565234699 4.170000e-38 169.0
8 TraesCS4A01G317400 chr5B 85.590 576 61 9 1012 1568 269952811 269952239 3.490000e-163 584.0
9 TraesCS4A01G317400 chr5B 83.556 225 16 7 374 593 707921762 707921554 8.900000e-45 191.0
10 TraesCS4A01G317400 chr6A 100.000 28 0 0 2411 2438 457093374 457093401 4.000000e-03 52.8
11 TraesCS4A01G317400 chr2A 100.000 28 0 0 2411 2438 44242216 44242189 4.000000e-03 52.8
12 TraesCS4A01G317400 chr1D 100.000 28 0 0 2411 2438 262018397 262018424 4.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G317400 chr4A 606646800 606649237 2437 True 4503.00 4503 100.00000 1 2438 1 chr4A.!!$R1 2437
1 TraesCS4A01G317400 chr5D 565257774 565258567 793 False 856.00 856 86.29100 789 1593 1 chr5D.!!$F2 804
2 TraesCS4A01G317400 chr5D 565234699 565239780 5081 True 678.25 1611 87.62025 23 2412 4 chr5D.!!$R2 2389
3 TraesCS4A01G317400 chr5D 338408349 338408930 581 False 580.00 580 85.42000 1012 1568 1 chr5D.!!$F1 556
4 TraesCS4A01G317400 chr5D 476457094 476457676 582 True 571.00 571 85.07700 1012 1568 1 chr5D.!!$R1 556
5 TraesCS4A01G317400 chr5B 269952239 269952811 572 True 584.00 584 85.59000 1012 1568 1 chr5B.!!$R1 556

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
499 500 0.029834 GATTGATCACCATGCACGGC 59.97 55.0 0.0 0.0 0.0 5.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1886 2112 0.03831 GGACTACTTGCTTGGGGCTT 59.962 55.0 0.0 0.0 42.39 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 7.917505 GGAAATGTTACATTTTAGAGAGCATGG 59.082 37.037 22.04 0.00 0.00 3.66
33 34 6.653020 ACATTTTAGAGAGCATGGATGTGTA 58.347 36.000 0.00 0.00 0.00 2.90
40 41 5.187772 AGAGAGCATGGATGTGTAGTACAAA 59.812 40.000 4.11 0.00 43.77 2.83
44 45 4.457603 GCATGGATGTGTAGTACAAAACCA 59.542 41.667 21.20 21.20 43.77 3.67
51 52 4.700692 TGTGTAGTACAAAACCAAAGTGCA 59.299 37.500 4.11 0.00 36.06 4.57
71 72 3.057736 GCATGATCAACAAGTGCTTCTGT 60.058 43.478 10.33 0.00 33.34 3.41
74 75 6.671190 CATGATCAACAAGTGCTTCTGTTTA 58.329 36.000 0.00 0.00 0.00 2.01
128 129 6.952773 TTTTGTTAGCCTACAGATTGTTGT 57.047 33.333 0.00 0.00 35.09 3.32
167 168 5.119931 TCTTTACACACAATGGCAATGTC 57.880 39.130 4.95 0.00 0.00 3.06
168 169 4.826733 TCTTTACACACAATGGCAATGTCT 59.173 37.500 4.95 0.00 0.00 3.41
169 170 5.301551 TCTTTACACACAATGGCAATGTCTT 59.698 36.000 4.95 0.00 0.00 3.01
210 211 6.710692 AAAGCATTGGAATTCTTTAAAGCG 57.289 33.333 10.51 0.00 31.64 4.68
236 237 3.067106 CCGAGCCATACAATACACATCC 58.933 50.000 0.00 0.00 0.00 3.51
237 238 3.244215 CCGAGCCATACAATACACATCCT 60.244 47.826 0.00 0.00 0.00 3.24
238 239 4.380531 CGAGCCATACAATACACATCCTT 58.619 43.478 0.00 0.00 0.00 3.36
240 241 5.116084 AGCCATACAATACACATCCTTGT 57.884 39.130 0.00 0.00 37.00 3.16
241 242 5.126067 AGCCATACAATACACATCCTTGTC 58.874 41.667 0.00 0.00 35.00 3.18
242 243 4.024893 GCCATACAATACACATCCTTGTCG 60.025 45.833 0.00 0.00 35.00 4.35
244 245 2.356135 ACAATACACATCCTTGTCGCC 58.644 47.619 0.00 0.00 32.34 5.54
245 246 2.290008 ACAATACACATCCTTGTCGCCA 60.290 45.455 0.00 0.00 32.34 5.69
246 247 2.315925 ATACACATCCTTGTCGCCAG 57.684 50.000 0.00 0.00 32.34 4.85
248 249 2.434884 ACATCCTTGTCGCCAGCG 60.435 61.111 5.50 5.50 41.35 5.18
249 250 3.197790 CATCCTTGTCGCCAGCGG 61.198 66.667 12.71 0.00 40.25 5.52
250 251 3.706373 ATCCTTGTCGCCAGCGGT 61.706 61.111 12.71 0.00 40.25 5.68
251 252 3.254024 ATCCTTGTCGCCAGCGGTT 62.254 57.895 12.71 0.00 40.25 4.44
252 253 2.748058 ATCCTTGTCGCCAGCGGTTT 62.748 55.000 12.71 0.00 40.25 3.27
253 254 2.252260 CTTGTCGCCAGCGGTTTG 59.748 61.111 12.71 0.00 40.25 2.93
254 255 2.203084 TTGTCGCCAGCGGTTTGA 60.203 55.556 12.71 0.00 40.25 2.69
255 256 2.443957 CTTGTCGCCAGCGGTTTGAC 62.444 60.000 12.71 3.02 40.25 3.18
256 257 2.665185 GTCGCCAGCGGTTTGACT 60.665 61.111 12.71 0.00 40.25 3.41
257 258 2.664851 TCGCCAGCGGTTTGACTG 60.665 61.111 12.71 0.00 40.25 3.51
260 261 3.655481 CCAGCGGTTTGACTGGTC 58.345 61.111 0.79 0.00 46.95 4.02
261 262 1.227823 CCAGCGGTTTGACTGGTCA 60.228 57.895 0.00 0.00 46.95 4.02
262 263 1.507141 CCAGCGGTTTGACTGGTCAC 61.507 60.000 2.65 0.00 46.95 3.67
263 264 1.227853 AGCGGTTTGACTGGTCACC 60.228 57.895 2.65 2.09 39.66 4.02
264 265 1.525077 GCGGTTTGACTGGTCACCA 60.525 57.895 0.00 0.00 39.66 4.17
265 266 0.889186 GCGGTTTGACTGGTCACCAT 60.889 55.000 0.00 0.00 39.66 3.55
266 267 0.874390 CGGTTTGACTGGTCACCATG 59.126 55.000 0.00 0.00 39.66 3.66
267 268 1.542328 CGGTTTGACTGGTCACCATGA 60.542 52.381 0.00 0.00 39.66 3.07
268 269 2.582052 GGTTTGACTGGTCACCATGAA 58.418 47.619 0.00 0.00 39.66 2.57
269 270 2.293399 GGTTTGACTGGTCACCATGAAC 59.707 50.000 0.00 0.01 39.66 3.18
270 271 1.877637 TTGACTGGTCACCATGAACG 58.122 50.000 0.00 0.00 36.73 3.95
271 272 0.034756 TGACTGGTCACCATGAACGG 59.965 55.000 0.00 1.03 45.74 4.44
272 273 1.298859 GACTGGTCACCATGAACGGC 61.299 60.000 0.00 0.00 44.16 5.68
273 274 1.302431 CTGGTCACCATGAACGGCA 60.302 57.895 0.00 0.00 36.73 5.69
274 275 1.300971 CTGGTCACCATGAACGGCAG 61.301 60.000 0.00 0.00 36.73 4.85
275 276 2.040544 GGTCACCATGAACGGCAGG 61.041 63.158 0.00 0.00 0.00 4.85
276 277 1.003839 GTCACCATGAACGGCAGGA 60.004 57.895 0.00 0.00 0.00 3.86
277 278 1.003839 TCACCATGAACGGCAGGAC 60.004 57.895 0.00 0.00 0.00 3.85
278 279 1.302431 CACCATGAACGGCAGGACA 60.302 57.895 0.00 0.00 0.00 4.02
279 280 1.003355 ACCATGAACGGCAGGACAG 60.003 57.895 0.00 0.00 0.00 3.51
280 281 1.296392 CCATGAACGGCAGGACAGA 59.704 57.895 0.00 0.00 0.00 3.41
281 282 0.742281 CCATGAACGGCAGGACAGAG 60.742 60.000 0.00 0.00 0.00 3.35
282 283 0.742281 CATGAACGGCAGGACAGAGG 60.742 60.000 0.00 0.00 0.00 3.69
283 284 1.194781 ATGAACGGCAGGACAGAGGT 61.195 55.000 0.00 0.00 0.00 3.85
284 285 1.079750 GAACGGCAGGACAGAGGTC 60.080 63.158 0.00 0.00 43.55 3.85
285 286 1.534235 AACGGCAGGACAGAGGTCT 60.534 57.895 0.00 0.00 43.77 3.85
286 287 0.251653 AACGGCAGGACAGAGGTCTA 60.252 55.000 0.00 0.00 43.77 2.59
287 288 0.966370 ACGGCAGGACAGAGGTCTAC 60.966 60.000 0.00 0.00 43.77 2.59
288 289 0.681564 CGGCAGGACAGAGGTCTACT 60.682 60.000 0.00 0.00 43.77 2.57
289 290 1.408405 CGGCAGGACAGAGGTCTACTA 60.408 57.143 0.00 0.00 43.77 1.82
290 291 2.303175 GGCAGGACAGAGGTCTACTAG 58.697 57.143 0.00 0.00 43.77 2.57
291 292 2.303175 GCAGGACAGAGGTCTACTAGG 58.697 57.143 0.00 0.00 43.77 3.02
292 293 2.938838 CAGGACAGAGGTCTACTAGGG 58.061 57.143 0.00 0.00 43.77 3.53
293 294 1.854280 AGGACAGAGGTCTACTAGGGG 59.146 57.143 0.00 0.00 43.77 4.79
294 295 1.570024 GGACAGAGGTCTACTAGGGGT 59.430 57.143 0.00 0.00 43.77 4.95
295 296 2.024177 GGACAGAGGTCTACTAGGGGTT 60.024 54.545 0.00 0.00 43.77 4.11
296 297 3.203934 GGACAGAGGTCTACTAGGGGTTA 59.796 52.174 0.00 0.00 43.77 2.85
317 318 1.801771 CCTGCGTTATGTTCGTTTGGA 59.198 47.619 0.00 0.00 0.00 3.53
318 319 2.224549 CCTGCGTTATGTTCGTTTGGAA 59.775 45.455 0.00 0.00 0.00 3.53
319 320 3.479006 CTGCGTTATGTTCGTTTGGAAG 58.521 45.455 0.00 0.00 34.69 3.46
321 322 3.223157 GCGTTATGTTCGTTTGGAAGTG 58.777 45.455 0.00 0.00 34.69 3.16
322 323 3.303526 GCGTTATGTTCGTTTGGAAGTGT 60.304 43.478 0.00 0.00 34.69 3.55
323 324 4.208355 CGTTATGTTCGTTTGGAAGTGTG 58.792 43.478 0.00 0.00 34.69 3.82
324 325 4.025563 CGTTATGTTCGTTTGGAAGTGTGA 60.026 41.667 0.00 0.00 34.69 3.58
325 326 5.440685 GTTATGTTCGTTTGGAAGTGTGAG 58.559 41.667 0.00 0.00 34.69 3.51
326 327 3.254470 TGTTCGTTTGGAAGTGTGAGA 57.746 42.857 0.00 0.00 34.69 3.27
327 328 3.601435 TGTTCGTTTGGAAGTGTGAGAA 58.399 40.909 0.00 0.00 34.69 2.87
328 329 3.621268 TGTTCGTTTGGAAGTGTGAGAAG 59.379 43.478 0.00 0.00 34.69 2.85
329 330 3.536956 TCGTTTGGAAGTGTGAGAAGT 57.463 42.857 0.00 0.00 0.00 3.01
331 332 5.209818 TCGTTTGGAAGTGTGAGAAGTAT 57.790 39.130 0.00 0.00 0.00 2.12
332 333 4.988540 TCGTTTGGAAGTGTGAGAAGTATG 59.011 41.667 0.00 0.00 0.00 2.39
333 334 4.377431 CGTTTGGAAGTGTGAGAAGTATGC 60.377 45.833 0.00 0.00 0.00 3.14
334 335 4.623932 TTGGAAGTGTGAGAAGTATGCT 57.376 40.909 0.00 0.00 0.00 3.79
335 336 3.930336 TGGAAGTGTGAGAAGTATGCTG 58.070 45.455 0.00 0.00 0.00 4.41
336 337 2.675348 GGAAGTGTGAGAAGTATGCTGC 59.325 50.000 0.00 0.00 0.00 5.25
337 338 3.329386 GAAGTGTGAGAAGTATGCTGCA 58.671 45.455 4.13 4.13 0.00 4.41
338 339 3.623906 AGTGTGAGAAGTATGCTGCAT 57.376 42.857 20.18 20.18 0.00 3.96
339 340 4.743057 AGTGTGAGAAGTATGCTGCATA 57.257 40.909 17.90 17.90 0.00 3.14
340 341 5.089970 AGTGTGAGAAGTATGCTGCATAA 57.910 39.130 22.82 4.72 0.00 1.90
341 342 5.114780 AGTGTGAGAAGTATGCTGCATAAG 58.885 41.667 22.82 0.00 0.00 1.73
342 343 5.105187 AGTGTGAGAAGTATGCTGCATAAGA 60.105 40.000 22.82 1.40 0.00 2.10
343 344 5.757320 GTGTGAGAAGTATGCTGCATAAGAT 59.243 40.000 22.82 12.38 0.00 2.40
344 345 6.925718 GTGTGAGAAGTATGCTGCATAAGATA 59.074 38.462 22.82 0.60 0.00 1.98
345 346 7.601886 GTGTGAGAAGTATGCTGCATAAGATAT 59.398 37.037 22.82 10.06 0.00 1.63
346 347 7.601508 TGTGAGAAGTATGCTGCATAAGATATG 59.398 37.037 22.82 0.00 0.00 1.78
347 348 6.592994 TGAGAAGTATGCTGCATAAGATATGC 59.407 38.462 22.82 13.95 44.76 3.14
348 349 6.709281 AGAAGTATGCTGCATAAGATATGCT 58.291 36.000 22.82 11.57 44.79 3.79
349 350 6.594547 AGAAGTATGCTGCATAAGATATGCTG 59.405 38.462 22.82 19.31 44.79 4.41
353 354 3.473093 CTGCATAAGATATGCTGCTGC 57.527 47.619 19.66 8.89 44.79 5.25
354 355 3.075148 CTGCATAAGATATGCTGCTGCT 58.925 45.455 19.66 5.09 44.79 4.24
355 356 2.812011 TGCATAAGATATGCTGCTGCTG 59.188 45.455 19.66 0.77 44.79 4.41
356 357 3.072211 GCATAAGATATGCTGCTGCTGA 58.928 45.455 17.00 4.86 41.52 4.26
357 358 3.690139 GCATAAGATATGCTGCTGCTGAT 59.310 43.478 17.00 9.52 41.52 2.90
358 359 4.156190 GCATAAGATATGCTGCTGCTGATT 59.844 41.667 17.00 7.12 41.52 2.57
359 360 5.353400 GCATAAGATATGCTGCTGCTGATTA 59.647 40.000 17.00 8.87 41.52 1.75
360 361 6.128090 GCATAAGATATGCTGCTGCTGATTAA 60.128 38.462 17.00 0.00 41.52 1.40
361 362 7.415318 GCATAAGATATGCTGCTGCTGATTAAT 60.415 37.037 17.00 3.29 41.52 1.40
362 363 6.497785 AAGATATGCTGCTGCTGATTAATC 57.502 37.500 17.00 8.60 40.48 1.75
363 364 5.806818 AGATATGCTGCTGCTGATTAATCT 58.193 37.500 17.00 11.52 40.48 2.40
364 365 5.644206 AGATATGCTGCTGCTGATTAATCTG 59.356 40.000 17.00 16.04 40.48 2.90
389 390 7.486802 CATTGTTGCATGTGATCTACTATCA 57.513 36.000 0.00 0.00 0.00 2.15
390 391 6.908870 TTGTTGCATGTGATCTACTATCAC 57.091 37.500 10.47 10.47 46.28 3.06
399 400 6.677027 GTGATCTACTATCACGCATAACAC 57.323 41.667 2.64 0.00 38.97 3.32
400 401 6.439599 GTGATCTACTATCACGCATAACACT 58.560 40.000 2.64 0.00 38.97 3.55
401 402 7.582352 GTGATCTACTATCACGCATAACACTA 58.418 38.462 2.64 0.00 38.97 2.74
402 403 7.534578 GTGATCTACTATCACGCATAACACTAC 59.465 40.741 2.64 0.00 38.97 2.73
403 404 5.982324 TCTACTATCACGCATAACACTACG 58.018 41.667 0.00 0.00 0.00 3.51
404 405 3.961182 ACTATCACGCATAACACTACGG 58.039 45.455 0.00 0.00 0.00 4.02
405 406 1.567504 ATCACGCATAACACTACGGC 58.432 50.000 0.00 0.00 0.00 5.68
406 407 0.244178 TCACGCATAACACTACGGCA 59.756 50.000 0.00 0.00 0.00 5.69
407 408 1.134936 TCACGCATAACACTACGGCAT 60.135 47.619 0.00 0.00 0.00 4.40
408 409 1.257936 CACGCATAACACTACGGCATC 59.742 52.381 0.00 0.00 0.00 3.91
409 410 1.134936 ACGCATAACACTACGGCATCA 60.135 47.619 0.00 0.00 0.00 3.07
410 411 1.257936 CGCATAACACTACGGCATCAC 59.742 52.381 0.00 0.00 0.00 3.06
411 412 1.597663 GCATAACACTACGGCATCACC 59.402 52.381 0.00 0.00 0.00 4.02
412 413 2.899976 CATAACACTACGGCATCACCA 58.100 47.619 0.00 0.00 39.03 4.17
413 414 2.373540 TAACACTACGGCATCACCAC 57.626 50.000 0.00 0.00 39.03 4.16
414 415 0.394938 AACACTACGGCATCACCACA 59.605 50.000 0.00 0.00 39.03 4.17
415 416 0.613260 ACACTACGGCATCACCACAT 59.387 50.000 0.00 0.00 39.03 3.21
416 417 1.009078 CACTACGGCATCACCACATG 58.991 55.000 0.00 0.00 39.03 3.21
417 418 0.901827 ACTACGGCATCACCACATGA 59.098 50.000 0.00 0.00 43.13 3.07
433 434 1.108776 ATGATGTGTTCATGCCCTGC 58.891 50.000 0.00 0.00 43.60 4.85
434 435 1.307355 TGATGTGTTCATGCCCTGCG 61.307 55.000 0.00 0.00 34.06 5.18
435 436 1.303561 ATGTGTTCATGCCCTGCGT 60.304 52.632 0.00 0.00 32.51 5.24
436 437 0.895100 ATGTGTTCATGCCCTGCGTT 60.895 50.000 0.00 0.00 32.51 4.84
437 438 1.210155 GTGTTCATGCCCTGCGTTC 59.790 57.895 0.00 0.00 0.00 3.95
438 439 1.073025 TGTTCATGCCCTGCGTTCT 59.927 52.632 0.00 0.00 0.00 3.01
439 440 1.236616 TGTTCATGCCCTGCGTTCTG 61.237 55.000 0.00 0.00 0.00 3.02
440 441 1.675310 TTCATGCCCTGCGTTCTGG 60.675 57.895 0.00 0.00 0.00 3.86
441 442 3.818787 CATGCCCTGCGTTCTGGC 61.819 66.667 0.00 0.00 45.56 4.85
497 498 3.368495 CATTGATTGATCACCATGCACG 58.632 45.455 0.00 0.00 36.36 5.34
498 499 1.381522 TGATTGATCACCATGCACGG 58.618 50.000 0.00 0.00 0.00 4.94
499 500 0.029834 GATTGATCACCATGCACGGC 59.970 55.000 0.00 0.00 0.00 5.68
500 501 1.717791 ATTGATCACCATGCACGGCG 61.718 55.000 4.80 4.80 0.00 6.46
523 524 1.375268 GCACAGAGTCACAGAGGCC 60.375 63.158 0.00 0.00 0.00 5.19
531 532 0.614979 GTCACAGAGGCCAGGTCCTA 60.615 60.000 5.01 0.00 36.38 2.94
536 537 0.105913 AGAGGCCAGGTCCTAGCTAC 60.106 60.000 5.01 4.07 36.38 3.58
537 538 0.105913 GAGGCCAGGTCCTAGCTACT 60.106 60.000 5.01 0.00 36.38 2.57
538 539 1.145325 GAGGCCAGGTCCTAGCTACTA 59.855 57.143 5.01 0.00 36.38 1.82
543 544 3.215975 CCAGGTCCTAGCTACTAGTGAC 58.784 54.545 5.39 2.87 35.52 3.67
608 609 0.744281 TATGCTGCTGCTACGCTGTA 59.256 50.000 17.00 0.00 40.48 2.74
619 620 2.337583 CTACGCTGTAGCACAACATGT 58.662 47.619 4.59 0.00 42.21 3.21
665 666 3.949754 ACATTACAGCAGCATTAGCACAT 59.050 39.130 0.00 0.00 45.49 3.21
687 688 7.966753 CACATCATATATTTTGTATCCTGCTGC 59.033 37.037 0.00 0.00 0.00 5.25
713 714 1.072852 GGATGATGGAGGCAGGAGC 59.927 63.158 0.00 0.00 41.10 4.70
778 779 3.923017 AAAGAAGAAGCATCAAACCCG 57.077 42.857 0.00 0.00 0.00 5.28
782 783 2.787473 AGAAGCATCAAACCCGATGA 57.213 45.000 5.13 0.00 44.67 2.92
815 816 3.833559 ATTTTCTCTCCCACCCAACAT 57.166 42.857 0.00 0.00 0.00 2.71
816 817 2.879103 TTTCTCTCCCACCCAACATC 57.121 50.000 0.00 0.00 0.00 3.06
817 818 0.991920 TTCTCTCCCACCCAACATCC 59.008 55.000 0.00 0.00 0.00 3.51
818 819 0.178876 TCTCTCCCACCCAACATCCA 60.179 55.000 0.00 0.00 0.00 3.41
819 820 0.698238 CTCTCCCACCCAACATCCAA 59.302 55.000 0.00 0.00 0.00 3.53
822 823 0.112218 TCCCACCCAACATCCAACAG 59.888 55.000 0.00 0.00 0.00 3.16
823 824 0.899717 CCCACCCAACATCCAACAGG 60.900 60.000 0.00 0.00 0.00 4.00
824 825 0.112218 CCACCCAACATCCAACAGGA 59.888 55.000 0.00 0.00 35.50 3.86
825 826 1.538047 CACCCAACATCCAACAGGAG 58.462 55.000 0.00 0.00 34.25 3.69
826 827 0.251341 ACCCAACATCCAACAGGAGC 60.251 55.000 0.00 0.00 34.25 4.70
827 828 0.967380 CCCAACATCCAACAGGAGCC 60.967 60.000 0.00 0.00 34.25 4.70
828 829 0.251297 CCAACATCCAACAGGAGCCA 60.251 55.000 0.00 0.00 34.25 4.75
829 830 1.171308 CAACATCCAACAGGAGCCAG 58.829 55.000 0.00 0.00 34.25 4.85
830 831 0.610232 AACATCCAACAGGAGCCAGC 60.610 55.000 0.00 0.00 34.25 4.85
831 832 2.110967 CATCCAACAGGAGCCAGCG 61.111 63.158 0.00 0.00 34.25 5.18
832 833 2.293318 ATCCAACAGGAGCCAGCGA 61.293 57.895 0.00 0.00 34.25 4.93
833 834 1.630126 ATCCAACAGGAGCCAGCGAT 61.630 55.000 0.00 0.00 34.25 4.58
872 873 2.747446 CTGTGCCTACATAAACACCCAC 59.253 50.000 0.00 0.00 35.97 4.61
909 912 1.551099 CCAACACTCCTCTCCTCTCCA 60.551 57.143 0.00 0.00 0.00 3.86
910 913 2.251818 CAACACTCCTCTCCTCTCCAA 58.748 52.381 0.00 0.00 0.00 3.53
912 915 1.190643 CACTCCTCTCCTCTCCAACC 58.809 60.000 0.00 0.00 0.00 3.77
917 920 0.108424 CTCTCCTCTCCAACCAAGCG 60.108 60.000 0.00 0.00 0.00 4.68
963 966 3.782656 GCTAGAGCTAGAGGTAGAGGT 57.217 52.381 8.65 0.00 38.21 3.85
964 967 4.895668 GCTAGAGCTAGAGGTAGAGGTA 57.104 50.000 8.65 0.00 38.21 3.08
973 981 6.268387 AGCTAGAGGTAGAGGTAGTAGTAGTG 59.732 46.154 0.00 0.00 0.00 2.74
988 996 7.706100 AGTAGTAGTGGTAGAAAGAAGAAGG 57.294 40.000 0.00 0.00 0.00 3.46
998 1011 2.202892 GAAGAAGGCGCGGGTAGG 60.203 66.667 8.83 0.00 0.00 3.18
1071 1084 2.363795 TTCCTCGTCGGGATGGCT 60.364 61.111 0.00 0.00 35.07 4.75
1251 1264 3.519973 CTGGGAGATGCGCGCCATA 62.520 63.158 30.77 11.06 38.36 2.74
1414 1441 4.436998 GTGGTCGTCTCCGGGCAG 62.437 72.222 0.00 0.00 33.95 4.85
1473 1513 0.461961 CGGTGGGATTGTCTCTCTCC 59.538 60.000 0.00 0.00 35.07 3.71
1482 1523 5.994668 GGGATTGTCTCTCTCCATTGATTAC 59.005 44.000 0.00 0.00 0.00 1.89
1490 1531 5.148502 TCTCTCCATTGATTACCTAGGGTC 58.851 45.833 14.81 8.82 37.09 4.46
1634 1687 0.763652 TACCACCGGTGTTGGCTTAA 59.236 50.000 31.80 0.00 36.19 1.85
1635 1688 0.111639 ACCACCGGTGTTGGCTTAAT 59.888 50.000 31.80 4.03 32.98 1.40
1636 1689 0.808755 CCACCGGTGTTGGCTTAATC 59.191 55.000 31.80 0.00 0.00 1.75
1637 1690 1.529226 CACCGGTGTTGGCTTAATCA 58.471 50.000 26.95 0.00 0.00 2.57
1639 1692 2.491693 CACCGGTGTTGGCTTAATCAAT 59.508 45.455 26.95 0.00 0.00 2.57
1668 1726 2.942376 TGTGTGTTAGTTCTGTTGGCTG 59.058 45.455 0.00 0.00 0.00 4.85
1669 1727 1.946768 TGTGTTAGTTCTGTTGGCTGC 59.053 47.619 0.00 0.00 0.00 5.25
1674 1732 0.825010 AGTTCTGTTGGCTGCCTTGG 60.825 55.000 21.03 7.62 0.00 3.61
1681 1739 2.005606 TTGGCTGCCTTGGTCCTTCA 62.006 55.000 21.03 0.00 0.00 3.02
1684 1742 1.260544 GCTGCCTTGGTCCTTCATTT 58.739 50.000 0.00 0.00 0.00 2.32
1692 1750 5.070001 CCTTGGTCCTTCATTTACTTCACA 58.930 41.667 0.00 0.00 0.00 3.58
1696 1754 4.702131 GGTCCTTCATTTACTTCACAGCAT 59.298 41.667 0.00 0.00 0.00 3.79
1699 1757 6.150140 GTCCTTCATTTACTTCACAGCATTCT 59.850 38.462 0.00 0.00 0.00 2.40
1709 1767 6.269315 ACTTCACAGCATTCTACTTAGATCG 58.731 40.000 0.00 0.00 31.40 3.69
1734 1792 3.681034 GCATGTTAGCATCTGTCTGGTCT 60.681 47.826 0.00 0.00 31.99 3.85
1735 1793 4.442052 GCATGTTAGCATCTGTCTGGTCTA 60.442 45.833 0.00 0.00 31.99 2.59
1738 1796 6.641169 TGTTAGCATCTGTCTGGTCTATAG 57.359 41.667 0.00 0.00 0.00 1.31
1740 1798 3.570540 AGCATCTGTCTGGTCTATAGCA 58.429 45.455 0.00 0.00 0.00 3.49
1741 1799 4.158786 AGCATCTGTCTGGTCTATAGCAT 58.841 43.478 0.00 0.00 31.47 3.79
1742 1800 4.021280 AGCATCTGTCTGGTCTATAGCATG 60.021 45.833 0.00 0.00 31.47 4.06
1743 1801 4.021632 GCATCTGTCTGGTCTATAGCATGA 60.022 45.833 0.00 0.00 31.47 3.07
1744 1802 5.712004 CATCTGTCTGGTCTATAGCATGAG 58.288 45.833 0.00 0.00 31.47 2.90
1745 1803 3.571828 TCTGTCTGGTCTATAGCATGAGC 59.428 47.826 0.00 0.00 42.56 4.26
1746 1804 2.630098 TGTCTGGTCTATAGCATGAGCC 59.370 50.000 0.00 0.00 43.56 4.70
1747 1805 2.896685 GTCTGGTCTATAGCATGAGCCT 59.103 50.000 0.00 0.00 43.56 4.58
1749 1807 4.709397 GTCTGGTCTATAGCATGAGCCTAT 59.291 45.833 0.00 0.00 43.56 2.57
1750 1808 5.186797 GTCTGGTCTATAGCATGAGCCTATT 59.813 44.000 0.00 0.00 43.56 1.73
1751 1809 5.186603 TCTGGTCTATAGCATGAGCCTATTG 59.813 44.000 0.00 0.00 43.56 1.90
1753 1811 5.307976 TGGTCTATAGCATGAGCCTATTGTT 59.692 40.000 0.00 0.00 43.56 2.83
1754 1812 6.183361 TGGTCTATAGCATGAGCCTATTGTTT 60.183 38.462 0.00 0.00 43.56 2.83
1755 1813 6.712547 GGTCTATAGCATGAGCCTATTGTTTT 59.287 38.462 0.00 0.00 43.56 2.43
1756 1814 7.095017 GGTCTATAGCATGAGCCTATTGTTTTC 60.095 40.741 0.00 0.00 43.56 2.29
1757 1815 7.442364 GTCTATAGCATGAGCCTATTGTTTTCA 59.558 37.037 0.00 0.00 43.56 2.69
1758 1816 8.159447 TCTATAGCATGAGCCTATTGTTTTCAT 58.841 33.333 0.00 0.00 43.56 2.57
1759 1817 5.927281 AGCATGAGCCTATTGTTTTCATT 57.073 34.783 0.00 0.00 43.56 2.57
1760 1818 6.290294 AGCATGAGCCTATTGTTTTCATTT 57.710 33.333 0.00 0.00 43.56 2.32
1761 1819 6.704310 AGCATGAGCCTATTGTTTTCATTTT 58.296 32.000 0.00 0.00 43.56 1.82
1787 2013 3.581755 ACTGTTGTGAATGATGCAATGC 58.418 40.909 0.00 0.00 0.00 3.56
1791 2017 3.239587 TGTGAATGATGCAATGCCTTG 57.760 42.857 1.53 0.00 35.36 3.61
1799 2025 4.025360 TGATGCAATGCCTTGAATAACCT 58.975 39.130 1.53 0.00 30.20 3.50
1800 2026 4.467082 TGATGCAATGCCTTGAATAACCTT 59.533 37.500 1.53 0.00 30.20 3.50
1802 2028 3.055963 TGCAATGCCTTGAATAACCTTGG 60.056 43.478 1.53 0.00 34.04 3.61
1808 2034 3.868754 GCCTTGAATAACCTTGGACTCGT 60.869 47.826 0.00 0.00 0.00 4.18
1809 2035 3.933332 CCTTGAATAACCTTGGACTCGTC 59.067 47.826 0.00 0.00 0.00 4.20
1819 2045 0.106708 TGGACTCGTCTTTGCTGCTT 59.893 50.000 0.00 0.00 0.00 3.91
1839 2065 5.300539 TGCTTAACAGATTTACCTGTGCAAA 59.699 36.000 0.00 0.00 45.82 3.68
1844 2070 4.039004 ACAGATTTACCTGTGCAAATTGCA 59.961 37.500 17.55 17.55 44.93 4.08
1886 2112 1.833630 CATCCTGTTACTCTCTGCCCA 59.166 52.381 0.00 0.00 0.00 5.36
1890 2116 0.324943 TGTTACTCTCTGCCCAAGCC 59.675 55.000 0.00 0.00 38.69 4.35
1891 2117 0.393132 GTTACTCTCTGCCCAAGCCC 60.393 60.000 0.00 0.00 38.69 5.19
1892 2118 1.562672 TTACTCTCTGCCCAAGCCCC 61.563 60.000 0.00 0.00 38.69 5.80
1893 2119 2.763988 TACTCTCTGCCCAAGCCCCA 62.764 60.000 0.00 0.00 38.69 4.96
1911 2137 3.947834 CCCCAAGCAAGTAGTCCTAAATG 59.052 47.826 0.00 0.00 0.00 2.32
1913 2139 4.324254 CCCAAGCAAGTAGTCCTAAATGGA 60.324 45.833 0.00 0.00 43.86 3.41
1925 2151 3.533907 TCCTAAATGGAGAGAGGGAGAGT 59.466 47.826 0.00 0.00 40.56 3.24
1929 2155 0.780637 TGGAGAGAGGGAGAGTGTGT 59.219 55.000 0.00 0.00 0.00 3.72
1938 2166 0.318762 GGAGAGTGTGTGTGACCCTC 59.681 60.000 0.00 0.00 0.00 4.30
1942 2170 1.598130 GTGTGTGTGACCCTCCTGC 60.598 63.158 0.00 0.00 0.00 4.85
1960 2188 2.161030 TGCTGTTGCATGCTTATGTGA 58.839 42.857 20.33 0.00 45.31 3.58
1961 2189 2.095110 TGCTGTTGCATGCTTATGTGAC 60.095 45.455 20.33 6.68 45.31 3.67
1962 2190 2.777494 CTGTTGCATGCTTATGTGACG 58.223 47.619 20.33 0.00 0.00 4.35
1977 2213 2.165641 TGTGACGTGGATGGTTAGCTAG 59.834 50.000 0.00 0.00 0.00 3.42
1987 2223 0.464452 GGTTAGCTAGGGCATGTCGT 59.536 55.000 0.00 0.00 41.70 4.34
1991 2227 1.078426 GCTAGGGCATGTCGTGGTT 60.078 57.895 2.06 0.00 38.54 3.67
1997 2233 1.068816 GGGCATGTCGTGGTTACAAAC 60.069 52.381 0.00 0.00 0.00 2.93
2042 2279 3.569701 AGTTCAATGTTGATGGTGTGGTC 59.430 43.478 0.00 0.00 37.00 4.02
2043 2280 3.507162 TCAATGTTGATGGTGTGGTCT 57.493 42.857 0.00 0.00 31.01 3.85
2044 2281 3.411446 TCAATGTTGATGGTGTGGTCTC 58.589 45.455 0.00 0.00 31.01 3.36
2045 2282 3.148412 CAATGTTGATGGTGTGGTCTCA 58.852 45.455 0.00 0.00 0.00 3.27
2046 2283 3.507162 ATGTTGATGGTGTGGTCTCAA 57.493 42.857 0.00 0.00 0.00 3.02
2047 2284 3.507162 TGTTGATGGTGTGGTCTCAAT 57.493 42.857 0.00 0.00 30.97 2.57
2048 2285 3.831323 TGTTGATGGTGTGGTCTCAATT 58.169 40.909 0.00 0.00 30.97 2.32
2060 2297 3.192001 TGGTCTCAATTCTCAAAGCATGC 59.808 43.478 10.51 10.51 0.00 4.06
2073 2310 2.108514 GCATGCACTGCGAGCCTAA 61.109 57.895 14.21 0.00 41.97 2.69
2074 2311 1.717937 CATGCACTGCGAGCCTAAC 59.282 57.895 0.00 0.00 0.00 2.34
2076 2313 0.036010 ATGCACTGCGAGCCTAACTT 60.036 50.000 0.00 0.00 0.00 2.66
2077 2314 0.670546 TGCACTGCGAGCCTAACTTC 60.671 55.000 0.00 0.00 0.00 3.01
2080 2317 2.417719 CACTGCGAGCCTAACTTCTTT 58.582 47.619 0.00 0.00 0.00 2.52
2084 2321 3.472652 TGCGAGCCTAACTTCTTTTTCA 58.527 40.909 0.00 0.00 0.00 2.69
2085 2322 4.072131 TGCGAGCCTAACTTCTTTTTCAT 58.928 39.130 0.00 0.00 0.00 2.57
2090 2327 6.590292 CGAGCCTAACTTCTTTTTCATAGTCA 59.410 38.462 0.00 0.00 0.00 3.41
2091 2328 7.201478 CGAGCCTAACTTCTTTTTCATAGTCAG 60.201 40.741 0.00 0.00 0.00 3.51
2092 2329 7.454225 AGCCTAACTTCTTTTTCATAGTCAGT 58.546 34.615 0.00 0.00 0.00 3.41
2093 2330 7.389053 AGCCTAACTTCTTTTTCATAGTCAGTG 59.611 37.037 0.00 0.00 0.00 3.66
2162 2401 5.334337 GCATTTAGCACAGCATCGAATATCA 60.334 40.000 0.00 0.00 44.79 2.15
2183 2422 1.369625 CATTACGGTCTTCAGCCCAC 58.630 55.000 0.00 0.00 0.00 4.61
2199 2438 2.611751 GCCCACAATTTTTGGTGTTGTC 59.388 45.455 1.13 0.00 34.09 3.18
2236 2475 3.116091 ACAGGCCCTGTTTGTCAAG 57.884 52.632 11.57 0.00 42.59 3.02
2237 2476 0.468029 ACAGGCCCTGTTTGTCAAGG 60.468 55.000 11.57 0.00 42.59 3.61
2247 2486 3.206150 TGTTTGTCAAGGACTCAAGCTC 58.794 45.455 0.00 0.00 33.15 4.09
2275 2514 8.277197 AGGGCTTATATATTATGACACATGCAT 58.723 33.333 0.00 0.00 0.00 3.96
2276 2515 8.906867 GGGCTTATATATTATGACACATGCATT 58.093 33.333 0.00 0.00 0.00 3.56
2277 2516 9.726232 GGCTTATATATTATGACACATGCATTG 57.274 33.333 0.00 1.69 0.00 2.82
2289 2532 4.116961 CACATGCATTGGATTGATTGTCC 58.883 43.478 0.00 0.00 36.26 4.02
2293 2536 4.598022 TGCATTGGATTGATTGTCCACTA 58.402 39.130 0.00 0.00 45.05 2.74
2369 2614 2.159366 TGGACGCACAACAAAAACGATT 60.159 40.909 0.00 0.00 0.00 3.34
2377 2622 5.116983 GCACAACAAAAACGATTAGATGTGG 59.883 40.000 16.51 7.23 36.91 4.17
2423 2668 2.165319 AGTTACCGAAACTGCTCCAC 57.835 50.000 2.76 0.00 46.90 4.02
2424 2669 1.414919 AGTTACCGAAACTGCTCCACA 59.585 47.619 2.76 0.00 46.90 4.17
2435 2680 1.795768 TGCTCCACAGACGATGTTTC 58.204 50.000 0.00 0.00 41.41 2.78
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.917505 CCATGCTCTCTAAAATGTAACATTTCC 59.082 37.037 0.00 0.00 0.00 3.13
1 2 8.677300 TCCATGCTCTCTAAAATGTAACATTTC 58.323 33.333 0.00 0.00 0.00 2.17
2 3 8.579850 TCCATGCTCTCTAAAATGTAACATTT 57.420 30.769 0.00 0.00 0.00 2.32
3 4 8.627403 CATCCATGCTCTCTAAAATGTAACATT 58.373 33.333 0.00 0.00 0.00 2.71
4 5 7.776969 ACATCCATGCTCTCTAAAATGTAACAT 59.223 33.333 0.00 0.00 0.00 2.71
5 6 7.066163 CACATCCATGCTCTCTAAAATGTAACA 59.934 37.037 0.00 0.00 0.00 2.41
6 7 7.066284 ACACATCCATGCTCTCTAAAATGTAAC 59.934 37.037 0.00 0.00 0.00 2.50
7 8 7.112122 ACACATCCATGCTCTCTAAAATGTAA 58.888 34.615 0.00 0.00 0.00 2.41
8 9 6.653020 ACACATCCATGCTCTCTAAAATGTA 58.347 36.000 0.00 0.00 0.00 2.29
9 10 5.503927 ACACATCCATGCTCTCTAAAATGT 58.496 37.500 0.00 0.00 0.00 2.71
10 11 6.765036 ACTACACATCCATGCTCTCTAAAATG 59.235 38.462 0.00 0.00 0.00 2.32
11 12 6.893583 ACTACACATCCATGCTCTCTAAAAT 58.106 36.000 0.00 0.00 0.00 1.82
12 13 6.299805 ACTACACATCCATGCTCTCTAAAA 57.700 37.500 0.00 0.00 0.00 1.52
13 14 5.939764 ACTACACATCCATGCTCTCTAAA 57.060 39.130 0.00 0.00 0.00 1.85
14 15 5.891551 TGTACTACACATCCATGCTCTCTAA 59.108 40.000 0.00 0.00 30.04 2.10
15 16 5.445964 TGTACTACACATCCATGCTCTCTA 58.554 41.667 0.00 0.00 30.04 2.43
16 17 4.281657 TGTACTACACATCCATGCTCTCT 58.718 43.478 0.00 0.00 30.04 3.10
17 18 4.655762 TGTACTACACATCCATGCTCTC 57.344 45.455 0.00 0.00 30.04 3.20
18 19 5.420725 TTTGTACTACACATCCATGCTCT 57.579 39.130 0.00 0.00 36.90 4.09
19 20 5.163754 GGTTTTGTACTACACATCCATGCTC 60.164 44.000 0.00 0.00 36.90 4.26
20 21 4.700213 GGTTTTGTACTACACATCCATGCT 59.300 41.667 0.00 0.00 36.90 3.79
21 22 4.457603 TGGTTTTGTACTACACATCCATGC 59.542 41.667 0.00 0.00 36.90 4.06
26 27 5.912955 GCACTTTGGTTTTGTACTACACATC 59.087 40.000 0.00 0.00 36.90 3.06
33 34 5.301551 TGATCATGCACTTTGGTTTTGTACT 59.698 36.000 0.00 0.00 0.00 2.73
40 41 4.099881 ACTTGTTGATCATGCACTTTGGTT 59.900 37.500 0.00 0.00 0.00 3.67
44 45 3.319972 AGCACTTGTTGATCATGCACTTT 59.680 39.130 17.93 0.00 35.30 2.66
51 52 5.779529 AAACAGAAGCACTTGTTGATCAT 57.220 34.783 0.00 0.00 0.00 2.45
71 72 6.882768 ATTCTGGCCCCAAAACAATATAAA 57.117 33.333 0.00 0.00 0.00 1.40
74 75 4.535692 ACAATTCTGGCCCCAAAACAATAT 59.464 37.500 0.00 0.00 0.00 1.28
148 149 5.528043 AAAGACATTGCCATTGTGTGTAA 57.472 34.783 0.00 0.00 0.00 2.41
207 208 0.750546 TGTATGGCTCGGACTACGCT 60.751 55.000 0.00 0.00 43.86 5.07
210 211 4.202080 TGTGTATTGTATGGCTCGGACTAC 60.202 45.833 0.00 0.00 0.00 2.73
236 237 2.250939 TCAAACCGCTGGCGACAAG 61.251 57.895 16.79 2.10 42.06 3.16
237 238 2.203084 TCAAACCGCTGGCGACAA 60.203 55.556 16.79 0.00 42.06 3.18
238 239 2.970324 GTCAAACCGCTGGCGACA 60.970 61.111 16.79 0.00 42.83 4.35
240 241 2.664851 CAGTCAAACCGCTGGCGA 60.665 61.111 16.79 0.00 42.83 5.54
241 242 3.726517 CCAGTCAAACCGCTGGCG 61.727 66.667 8.08 8.08 44.65 5.69
244 245 1.507141 GGTGACCAGTCAAACCGCTG 61.507 60.000 1.23 0.00 41.85 5.18
245 246 1.227853 GGTGACCAGTCAAACCGCT 60.228 57.895 1.23 0.00 41.85 5.52
246 247 0.889186 ATGGTGACCAGTCAAACCGC 60.889 55.000 11.23 0.00 41.85 5.68
248 249 2.270352 TCATGGTGACCAGTCAAACC 57.730 50.000 11.23 1.36 41.85 3.27
249 250 2.032030 CGTTCATGGTGACCAGTCAAAC 60.032 50.000 11.23 10.26 41.85 2.93
250 251 2.217750 CGTTCATGGTGACCAGTCAAA 58.782 47.619 11.23 0.00 41.85 2.69
251 252 1.542328 CCGTTCATGGTGACCAGTCAA 60.542 52.381 11.23 0.00 41.85 3.18
252 253 0.034756 CCGTTCATGGTGACCAGTCA 59.965 55.000 11.23 0.00 36.75 3.41
253 254 1.298859 GCCGTTCATGGTGACCAGTC 61.299 60.000 11.23 0.00 36.75 3.51
254 255 1.302511 GCCGTTCATGGTGACCAGT 60.303 57.895 11.23 0.00 36.75 4.00
255 256 1.300971 CTGCCGTTCATGGTGACCAG 61.301 60.000 11.23 2.47 36.75 4.00
256 257 1.302431 CTGCCGTTCATGGTGACCA 60.302 57.895 6.84 6.84 38.19 4.02
257 258 2.040544 CCTGCCGTTCATGGTGACC 61.041 63.158 0.00 0.00 0.00 4.02
258 259 1.003839 TCCTGCCGTTCATGGTGAC 60.004 57.895 0.00 0.00 0.00 3.67
259 260 1.003839 GTCCTGCCGTTCATGGTGA 60.004 57.895 0.00 0.00 0.00 4.02
260 261 1.300971 CTGTCCTGCCGTTCATGGTG 61.301 60.000 0.00 0.00 0.00 4.17
261 262 1.003355 CTGTCCTGCCGTTCATGGT 60.003 57.895 0.00 0.00 0.00 3.55
262 263 0.742281 CTCTGTCCTGCCGTTCATGG 60.742 60.000 0.00 0.00 0.00 3.66
263 264 0.742281 CCTCTGTCCTGCCGTTCATG 60.742 60.000 0.00 0.00 0.00 3.07
264 265 1.194781 ACCTCTGTCCTGCCGTTCAT 61.195 55.000 0.00 0.00 0.00 2.57
265 266 1.816863 GACCTCTGTCCTGCCGTTCA 61.817 60.000 0.00 0.00 35.34 3.18
266 267 1.079750 GACCTCTGTCCTGCCGTTC 60.080 63.158 0.00 0.00 35.34 3.95
267 268 0.251653 TAGACCTCTGTCCTGCCGTT 60.252 55.000 0.00 0.00 42.81 4.44
268 269 0.966370 GTAGACCTCTGTCCTGCCGT 60.966 60.000 0.00 0.00 42.81 5.68
269 270 0.681564 AGTAGACCTCTGTCCTGCCG 60.682 60.000 0.00 0.00 42.81 5.69
270 271 2.303175 CTAGTAGACCTCTGTCCTGCC 58.697 57.143 0.00 0.00 42.81 4.85
271 272 2.303175 CCTAGTAGACCTCTGTCCTGC 58.697 57.143 0.00 0.00 42.81 4.85
272 273 2.423660 CCCCTAGTAGACCTCTGTCCTG 60.424 59.091 0.00 0.00 42.81 3.86
273 274 1.854280 CCCCTAGTAGACCTCTGTCCT 59.146 57.143 0.00 0.00 42.81 3.85
274 275 1.570024 ACCCCTAGTAGACCTCTGTCC 59.430 57.143 0.00 0.00 42.81 4.02
275 276 3.385314 AACCCCTAGTAGACCTCTGTC 57.615 52.381 0.00 0.00 42.09 3.51
276 277 3.053019 GGTAACCCCTAGTAGACCTCTGT 60.053 52.174 0.00 0.00 33.58 3.41
277 278 3.204831 AGGTAACCCCTAGTAGACCTCTG 59.795 52.174 0.00 0.00 43.87 3.35
278 279 3.204831 CAGGTAACCCCTAGTAGACCTCT 59.795 52.174 4.83 0.00 43.86 3.69
279 280 3.564264 CAGGTAACCCCTAGTAGACCTC 58.436 54.545 4.83 0.00 43.86 3.85
280 281 2.359037 GCAGGTAACCCCTAGTAGACCT 60.359 54.545 0.00 0.00 43.86 3.85
281 282 2.037901 GCAGGTAACCCCTAGTAGACC 58.962 57.143 0.00 0.00 43.86 3.85
282 283 1.680207 CGCAGGTAACCCCTAGTAGAC 59.320 57.143 0.00 0.00 43.86 2.59
283 284 1.285962 ACGCAGGTAACCCCTAGTAGA 59.714 52.381 0.00 0.00 43.86 2.59
284 285 1.772836 ACGCAGGTAACCCCTAGTAG 58.227 55.000 0.00 0.00 43.86 2.57
285 286 2.236489 AACGCAGGTAACCCCTAGTA 57.764 50.000 0.00 0.00 43.86 1.82
286 287 2.236489 TAACGCAGGTAACCCCTAGT 57.764 50.000 0.00 0.00 43.86 2.57
287 288 2.433239 ACATAACGCAGGTAACCCCTAG 59.567 50.000 0.00 0.00 43.86 3.02
288 289 2.469952 ACATAACGCAGGTAACCCCTA 58.530 47.619 0.00 0.00 43.86 3.53
290 291 2.011947 GAACATAACGCAGGTAACCCC 58.988 52.381 0.00 0.00 37.17 4.95
291 292 1.662122 CGAACATAACGCAGGTAACCC 59.338 52.381 0.00 0.00 37.17 4.11
292 293 2.340337 ACGAACATAACGCAGGTAACC 58.660 47.619 0.00 0.00 37.17 2.85
293 294 4.145997 CAAACGAACATAACGCAGGTAAC 58.854 43.478 0.00 0.00 0.00 2.50
294 295 3.186817 CCAAACGAACATAACGCAGGTAA 59.813 43.478 0.00 0.00 0.00 2.85
295 296 2.737783 CCAAACGAACATAACGCAGGTA 59.262 45.455 0.00 0.00 0.00 3.08
296 297 1.533731 CCAAACGAACATAACGCAGGT 59.466 47.619 0.00 0.00 0.00 4.00
317 318 3.407424 TGCAGCATACTTCTCACACTT 57.593 42.857 0.00 0.00 0.00 3.16
318 319 3.623906 ATGCAGCATACTTCTCACACT 57.376 42.857 5.94 0.00 0.00 3.55
319 320 5.111989 TCTTATGCAGCATACTTCTCACAC 58.888 41.667 15.05 0.00 0.00 3.82
321 322 7.412781 GCATATCTTATGCAGCATACTTCTCAC 60.413 40.741 15.05 0.01 44.00 3.51
322 323 6.592994 GCATATCTTATGCAGCATACTTCTCA 59.407 38.462 15.05 0.00 44.00 3.27
323 324 6.817641 AGCATATCTTATGCAGCATACTTCTC 59.182 38.462 15.05 2.09 46.77 2.87
324 325 6.594547 CAGCATATCTTATGCAGCATACTTCT 59.405 38.462 15.05 3.32 46.77 2.85
325 326 6.773080 CAGCATATCTTATGCAGCATACTTC 58.227 40.000 15.05 1.12 46.77 3.01
326 327 6.738832 CAGCATATCTTATGCAGCATACTT 57.261 37.500 15.05 5.51 46.77 2.24
333 334 3.075148 AGCAGCAGCATATCTTATGCAG 58.925 45.455 18.70 13.09 46.77 4.41
334 335 2.812011 CAGCAGCAGCATATCTTATGCA 59.188 45.455 18.70 0.00 46.77 3.96
335 336 3.072211 TCAGCAGCAGCATATCTTATGC 58.928 45.455 10.75 10.75 45.49 3.14
336 337 5.881777 AATCAGCAGCAGCATATCTTATG 57.118 39.130 3.17 0.00 45.49 1.90
337 338 8.047911 AGATTAATCAGCAGCAGCATATCTTAT 58.952 33.333 17.56 0.00 45.49 1.73
338 339 7.333672 CAGATTAATCAGCAGCAGCATATCTTA 59.666 37.037 17.56 0.00 45.49 2.10
339 340 6.149640 CAGATTAATCAGCAGCAGCATATCTT 59.850 38.462 17.56 0.00 45.49 2.40
340 341 5.644206 CAGATTAATCAGCAGCAGCATATCT 59.356 40.000 17.56 0.00 45.49 1.98
341 342 5.674068 GCAGATTAATCAGCAGCAGCATATC 60.674 44.000 23.48 0.00 45.49 1.63
342 343 4.156190 GCAGATTAATCAGCAGCAGCATAT 59.844 41.667 23.48 0.00 45.49 1.78
343 344 3.501062 GCAGATTAATCAGCAGCAGCATA 59.499 43.478 23.48 0.00 45.49 3.14
344 345 2.293677 GCAGATTAATCAGCAGCAGCAT 59.706 45.455 23.48 0.00 45.49 3.79
345 346 1.674441 GCAGATTAATCAGCAGCAGCA 59.326 47.619 23.48 0.00 45.49 4.41
346 347 1.674441 TGCAGATTAATCAGCAGCAGC 59.326 47.619 26.23 13.93 43.09 5.25
365 366 7.350467 GTGATAGTAGATCACATGCAACAATG 58.650 38.462 11.81 0.00 45.61 2.82
366 367 6.201615 CGTGATAGTAGATCACATGCAACAAT 59.798 38.462 15.80 0.00 46.38 2.71
367 368 5.519927 CGTGATAGTAGATCACATGCAACAA 59.480 40.000 15.80 0.00 46.38 2.83
368 369 5.043248 CGTGATAGTAGATCACATGCAACA 58.957 41.667 15.80 0.00 46.38 3.33
369 370 4.084849 GCGTGATAGTAGATCACATGCAAC 60.085 45.833 15.80 0.00 46.38 4.17
370 371 4.051237 GCGTGATAGTAGATCACATGCAA 58.949 43.478 15.80 0.00 46.38 4.08
371 372 3.068024 TGCGTGATAGTAGATCACATGCA 59.932 43.478 15.80 14.31 46.38 3.96
372 373 3.642705 TGCGTGATAGTAGATCACATGC 58.357 45.455 15.80 12.37 46.38 4.06
373 374 6.863126 TGTTATGCGTGATAGTAGATCACATG 59.137 38.462 15.80 0.00 46.38 3.21
374 375 6.863645 GTGTTATGCGTGATAGTAGATCACAT 59.136 38.462 15.80 7.04 46.38 3.21
375 376 6.039382 AGTGTTATGCGTGATAGTAGATCACA 59.961 38.462 15.80 0.56 46.38 3.58
376 377 6.439599 AGTGTTATGCGTGATAGTAGATCAC 58.560 40.000 7.48 7.48 43.55 3.06
377 378 6.635030 AGTGTTATGCGTGATAGTAGATCA 57.365 37.500 0.00 0.00 0.00 2.92
378 379 6.737301 CGTAGTGTTATGCGTGATAGTAGATC 59.263 42.308 0.00 0.00 0.00 2.75
379 380 6.348295 CCGTAGTGTTATGCGTGATAGTAGAT 60.348 42.308 0.00 0.00 0.00 1.98
380 381 5.049886 CCGTAGTGTTATGCGTGATAGTAGA 60.050 44.000 0.00 0.00 0.00 2.59
381 382 5.145059 CCGTAGTGTTATGCGTGATAGTAG 58.855 45.833 0.00 0.00 0.00 2.57
382 383 4.555313 GCCGTAGTGTTATGCGTGATAGTA 60.555 45.833 0.00 0.00 0.00 1.82
383 384 3.794475 GCCGTAGTGTTATGCGTGATAGT 60.794 47.826 0.00 0.00 0.00 2.12
384 385 2.724690 GCCGTAGTGTTATGCGTGATAG 59.275 50.000 0.00 0.00 0.00 2.08
385 386 2.099427 TGCCGTAGTGTTATGCGTGATA 59.901 45.455 0.00 0.00 0.00 2.15
386 387 1.134936 TGCCGTAGTGTTATGCGTGAT 60.135 47.619 0.00 0.00 0.00 3.06
387 388 0.244178 TGCCGTAGTGTTATGCGTGA 59.756 50.000 0.00 0.00 0.00 4.35
388 389 1.257936 GATGCCGTAGTGTTATGCGTG 59.742 52.381 0.00 0.00 0.00 5.34
389 390 1.134936 TGATGCCGTAGTGTTATGCGT 60.135 47.619 0.00 0.00 0.00 5.24
390 391 1.257936 GTGATGCCGTAGTGTTATGCG 59.742 52.381 0.00 0.00 0.00 4.73
391 392 1.597663 GGTGATGCCGTAGTGTTATGC 59.402 52.381 0.00 0.00 0.00 3.14
392 393 2.607635 GTGGTGATGCCGTAGTGTTATG 59.392 50.000 0.00 0.00 41.21 1.90
393 394 2.235155 TGTGGTGATGCCGTAGTGTTAT 59.765 45.455 0.00 0.00 41.21 1.89
394 395 1.619332 TGTGGTGATGCCGTAGTGTTA 59.381 47.619 0.00 0.00 41.21 2.41
395 396 0.394938 TGTGGTGATGCCGTAGTGTT 59.605 50.000 0.00 0.00 41.21 3.32
396 397 0.613260 ATGTGGTGATGCCGTAGTGT 59.387 50.000 0.00 0.00 41.21 3.55
397 398 1.009078 CATGTGGTGATGCCGTAGTG 58.991 55.000 0.00 0.00 41.21 2.74
398 399 0.901827 TCATGTGGTGATGCCGTAGT 59.098 50.000 0.00 0.00 41.21 2.73
399 400 2.245159 ATCATGTGGTGATGCCGTAG 57.755 50.000 0.00 0.00 45.76 3.51
415 416 1.307355 CGCAGGGCATGAACACATCA 61.307 55.000 1.99 0.00 43.67 3.07
416 417 1.308069 ACGCAGGGCATGAACACATC 61.308 55.000 1.99 0.00 0.00 3.06
417 418 0.895100 AACGCAGGGCATGAACACAT 60.895 50.000 1.99 0.00 0.00 3.21
418 419 1.514678 GAACGCAGGGCATGAACACA 61.515 55.000 1.99 0.00 0.00 3.72
419 420 1.210155 GAACGCAGGGCATGAACAC 59.790 57.895 1.99 0.00 0.00 3.32
420 421 1.073025 AGAACGCAGGGCATGAACA 59.927 52.632 1.99 0.00 0.00 3.18
421 422 1.503542 CAGAACGCAGGGCATGAAC 59.496 57.895 1.99 0.00 0.00 3.18
422 423 1.675310 CCAGAACGCAGGGCATGAA 60.675 57.895 1.99 0.00 0.00 2.57
423 424 2.046023 CCAGAACGCAGGGCATGA 60.046 61.111 1.99 0.00 0.00 3.07
424 425 3.818787 GCCAGAACGCAGGGCATG 61.819 66.667 0.00 0.00 46.92 4.06
434 435 3.628646 ATGGACCGCTGGCCAGAAC 62.629 63.158 37.21 18.52 33.77 3.01
435 436 3.329889 ATGGACCGCTGGCCAGAA 61.330 61.111 37.21 13.52 33.77 3.02
436 437 4.100084 CATGGACCGCTGGCCAGA 62.100 66.667 37.21 14.99 33.77 3.86
445 446 4.155733 TACGCAGGGCATGGACCG 62.156 66.667 0.00 0.00 34.63 4.79
446 447 2.513897 GTACGCAGGGCATGGACC 60.514 66.667 0.00 0.00 0.00 4.46
447 448 1.815421 CAGTACGCAGGGCATGGAC 60.815 63.158 0.00 0.00 0.00 4.02
448 449 2.584064 CAGTACGCAGGGCATGGA 59.416 61.111 0.00 0.00 0.00 3.41
477 478 2.359848 CCGTGCATGGTGATCAATCAAT 59.640 45.455 17.42 0.00 38.75 2.57
498 499 4.687215 TGACTCTGTGCTGCCCGC 62.687 66.667 0.00 0.00 39.77 6.13
499 500 2.740055 GTGACTCTGTGCTGCCCG 60.740 66.667 0.00 0.00 0.00 6.13
500 501 1.670406 CTGTGACTCTGTGCTGCCC 60.670 63.158 0.00 0.00 0.00 5.36
514 515 1.965754 GCTAGGACCTGGCCTCTGTG 61.966 65.000 18.77 4.72 39.50 3.66
515 516 1.687493 GCTAGGACCTGGCCTCTGT 60.687 63.158 18.77 0.00 39.50 3.41
523 524 4.159244 AGTCACTAGTAGCTAGGACCTG 57.841 50.000 3.53 0.00 38.30 4.00
531 532 4.386200 GGTAACCCCTAGTCACTAGTAGCT 60.386 50.000 11.06 0.00 32.62 3.32
536 537 4.287552 ACATGGTAACCCCTAGTCACTAG 58.712 47.826 4.66 4.66 34.16 2.57
537 538 4.341863 ACATGGTAACCCCTAGTCACTA 57.658 45.455 0.00 0.00 0.00 2.74
538 539 3.200958 ACATGGTAACCCCTAGTCACT 57.799 47.619 0.00 0.00 0.00 3.41
543 544 4.310022 TTCCAAACATGGTAACCCCTAG 57.690 45.455 0.00 0.00 0.00 3.02
608 609 1.250328 CCACATCCACATGTTGTGCT 58.750 50.000 19.38 0.00 46.51 4.40
619 620 4.463070 CATTGATATGGTCACCACATCCA 58.537 43.478 12.79 1.51 36.68 3.41
620 621 3.254166 GCATTGATATGGTCACCACATCC 59.746 47.826 12.79 0.00 36.68 3.51
621 622 3.884693 TGCATTGATATGGTCACCACATC 59.115 43.478 8.30 8.30 37.89 3.06
622 623 3.633525 GTGCATTGATATGGTCACCACAT 59.366 43.478 0.00 0.00 35.80 3.21
623 624 3.016031 GTGCATTGATATGGTCACCACA 58.984 45.455 0.00 0.00 35.80 4.17
624 625 3.016031 TGTGCATTGATATGGTCACCAC 58.984 45.455 0.00 0.00 35.80 4.16
665 666 6.147656 CGTGCAGCAGGATACAAAATATATGA 59.852 38.462 9.63 0.00 41.41 2.15
713 714 4.345271 TGATGCATTGTGAAATCGAGTG 57.655 40.909 0.00 0.00 0.00 3.51
759 760 3.140325 TCGGGTTTGATGCTTCTTCTT 57.860 42.857 0.88 0.00 0.00 2.52
760 761 2.859165 TCGGGTTTGATGCTTCTTCT 57.141 45.000 0.88 0.00 0.00 2.85
761 762 3.009723 TCATCGGGTTTGATGCTTCTTC 58.990 45.455 0.88 0.00 44.32 2.87
762 763 3.071874 TCATCGGGTTTGATGCTTCTT 57.928 42.857 0.88 0.00 44.32 2.52
763 764 2.787473 TCATCGGGTTTGATGCTTCT 57.213 45.000 0.88 0.00 44.32 2.85
764 765 3.243201 GGATTCATCGGGTTTGATGCTTC 60.243 47.826 0.00 0.00 44.32 3.86
765 766 2.689983 GGATTCATCGGGTTTGATGCTT 59.310 45.455 0.00 0.00 44.32 3.91
766 767 2.301346 GGATTCATCGGGTTTGATGCT 58.699 47.619 0.00 0.00 44.32 3.79
782 783 6.899075 TGGGAGAGAAAATTGATTGATGGATT 59.101 34.615 0.00 0.00 0.00 3.01
815 816 2.293318 ATCGCTGGCTCCTGTTGGA 61.293 57.895 0.00 0.00 40.69 3.53
816 817 2.110967 CATCGCTGGCTCCTGTTGG 61.111 63.158 0.00 0.00 0.00 3.77
817 818 1.376424 ACATCGCTGGCTCCTGTTG 60.376 57.895 0.00 0.00 0.00 3.33
818 819 1.376424 CACATCGCTGGCTCCTGTT 60.376 57.895 0.00 0.00 0.00 3.16
819 820 2.267006 CACATCGCTGGCTCCTGT 59.733 61.111 0.00 0.00 0.00 4.00
843 844 0.532573 ATGTAGGCACAGTCCAGTCG 59.467 55.000 0.00 0.00 38.30 4.18
853 854 2.089201 GGTGGGTGTTTATGTAGGCAC 58.911 52.381 0.00 0.00 0.00 5.01
909 912 4.269523 TGGCTGGCTCGCTTGGTT 62.270 61.111 2.00 0.00 0.00 3.67
910 913 4.711949 CTGGCTGGCTCGCTTGGT 62.712 66.667 2.00 0.00 0.00 3.67
917 920 1.071128 CTAGATGGCTGGCTGGCTC 59.929 63.158 18.27 12.74 42.34 4.70
957 960 8.615360 TCTTTCTACCACTACTACTACCTCTA 57.385 38.462 0.00 0.00 0.00 2.43
962 965 8.676401 CCTTCTTCTTTCTACCACTACTACTAC 58.324 40.741 0.00 0.00 0.00 2.73
963 966 7.338957 GCCTTCTTCTTTCTACCACTACTACTA 59.661 40.741 0.00 0.00 0.00 1.82
964 967 6.153170 GCCTTCTTCTTTCTACCACTACTACT 59.847 42.308 0.00 0.00 0.00 2.57
973 981 1.000145 CGCGCCTTCTTCTTTCTACC 59.000 55.000 0.00 0.00 0.00 3.18
998 1011 3.499737 CCTTGACGACGCCCATGC 61.500 66.667 0.00 0.00 0.00 4.06
1071 1084 3.298958 GGGAGACCGCTCATGTCA 58.701 61.111 0.00 0.00 43.14 3.58
1251 1264 1.082117 GGTTGACGCCGACGATGAAT 61.082 55.000 0.00 0.00 43.93 2.57
1450 1484 1.201429 AGAGACAATCCCACCGGCTT 61.201 55.000 0.00 0.00 0.00 4.35
1473 1513 3.134081 ACCACGACCCTAGGTAATCAATG 59.866 47.826 8.29 4.09 35.25 2.82
1482 1523 0.395312 AACACAACCACGACCCTAGG 59.605 55.000 0.06 0.06 0.00 3.02
1490 1531 2.616376 TCATTTGGAGAACACAACCACG 59.384 45.455 0.00 0.00 33.20 4.94
1634 1687 9.950496 AGAACTAACACACAAGAGATAATTGAT 57.050 29.630 0.00 0.00 0.00 2.57
1635 1688 9.208022 CAGAACTAACACACAAGAGATAATTGA 57.792 33.333 0.00 0.00 0.00 2.57
1636 1689 8.993121 ACAGAACTAACACACAAGAGATAATTG 58.007 33.333 0.00 0.00 0.00 2.32
1637 1690 9.561069 AACAGAACTAACACACAAGAGATAATT 57.439 29.630 0.00 0.00 0.00 1.40
1639 1692 7.441157 CCAACAGAACTAACACACAAGAGATAA 59.559 37.037 0.00 0.00 0.00 1.75
1668 1726 4.079253 TGAAGTAAATGAAGGACCAAGGC 58.921 43.478 0.00 0.00 0.00 4.35
1669 1727 5.070001 TGTGAAGTAAATGAAGGACCAAGG 58.930 41.667 0.00 0.00 0.00 3.61
1674 1732 5.886960 ATGCTGTGAAGTAAATGAAGGAC 57.113 39.130 0.00 0.00 0.00 3.85
1684 1742 7.282450 TCGATCTAAGTAGAATGCTGTGAAGTA 59.718 37.037 0.00 0.00 35.69 2.24
1692 1750 5.459536 TGCATCGATCTAAGTAGAATGCT 57.540 39.130 17.87 0.00 41.34 3.79
1696 1754 6.863645 GCTAACATGCATCGATCTAAGTAGAA 59.136 38.462 0.00 0.00 35.69 2.10
1699 1757 6.084326 TGCTAACATGCATCGATCTAAGTA 57.916 37.500 0.00 0.00 38.12 2.24
1726 1784 2.896685 AGGCTCATGCTATAGACCAGAC 59.103 50.000 3.21 0.00 39.59 3.51
1734 1792 8.696043 AATGAAAACAATAGGCTCATGCTATA 57.304 30.769 0.00 0.00 39.59 1.31
1735 1793 7.592885 AATGAAAACAATAGGCTCATGCTAT 57.407 32.000 0.00 0.00 39.59 2.97
1738 1796 6.973229 AAAATGAAAACAATAGGCTCATGC 57.027 33.333 0.00 0.00 38.76 4.06
1760 1818 8.549548 CATTGCATCATTCACAACAGTTAAAAA 58.450 29.630 0.00 0.00 0.00 1.94
1761 1819 7.307278 GCATTGCATCATTCACAACAGTTAAAA 60.307 33.333 3.15 0.00 0.00 1.52
1763 1821 5.634439 GCATTGCATCATTCACAACAGTTAA 59.366 36.000 3.15 0.00 0.00 2.01
1764 1822 5.162794 GCATTGCATCATTCACAACAGTTA 58.837 37.500 3.15 0.00 0.00 2.24
1766 1824 3.581755 GCATTGCATCATTCACAACAGT 58.418 40.909 3.15 0.00 0.00 3.55
1787 2013 3.933332 GACGAGTCCAAGGTTATTCAAGG 59.067 47.826 0.00 0.00 0.00 3.61
1791 2017 4.142881 GCAAAGACGAGTCCAAGGTTATTC 60.143 45.833 0.00 0.00 0.00 1.75
1799 2025 0.106708 AGCAGCAAAGACGAGTCCAA 59.893 50.000 0.00 0.00 0.00 3.53
1800 2026 0.106708 AAGCAGCAAAGACGAGTCCA 59.893 50.000 0.00 0.00 0.00 4.02
1802 2028 2.800544 TGTTAAGCAGCAAAGACGAGTC 59.199 45.455 0.00 0.00 0.00 3.36
1808 2034 6.003950 AGGTAAATCTGTTAAGCAGCAAAGA 58.996 36.000 0.00 0.00 44.66 2.52
1809 2035 6.088824 CAGGTAAATCTGTTAAGCAGCAAAG 58.911 40.000 0.00 0.00 44.66 2.77
1819 2045 6.155827 GCAATTTGCACAGGTAAATCTGTTA 58.844 36.000 16.35 0.00 45.24 2.41
1856 2082 5.140454 AGAGTAACAGGATGCCAAGTTTTT 58.860 37.500 0.00 0.00 42.53 1.94
1858 2084 4.042187 AGAGAGTAACAGGATGCCAAGTTT 59.958 41.667 0.00 0.00 42.53 2.66
1859 2085 3.584848 AGAGAGTAACAGGATGCCAAGTT 59.415 43.478 0.00 0.00 42.53 2.66
1860 2086 3.055530 CAGAGAGTAACAGGATGCCAAGT 60.056 47.826 0.00 0.00 42.53 3.16
1861 2087 3.529533 CAGAGAGTAACAGGATGCCAAG 58.470 50.000 0.00 0.00 42.53 3.61
1863 2089 1.208052 GCAGAGAGTAACAGGATGCCA 59.792 52.381 0.00 0.00 42.53 4.92
1864 2090 1.474143 GGCAGAGAGTAACAGGATGCC 60.474 57.143 0.00 0.00 44.27 4.40
1865 2091 1.474143 GGGCAGAGAGTAACAGGATGC 60.474 57.143 0.00 0.00 42.53 3.91
1866 2092 1.833630 TGGGCAGAGAGTAACAGGATG 59.166 52.381 0.00 0.00 46.00 3.51
1867 2093 2.254152 TGGGCAGAGAGTAACAGGAT 57.746 50.000 0.00 0.00 0.00 3.24
1870 2096 1.677217 GGCTTGGGCAGAGAGTAACAG 60.677 57.143 0.00 0.00 40.87 3.16
1871 2097 0.324943 GGCTTGGGCAGAGAGTAACA 59.675 55.000 0.00 0.00 40.87 2.41
1872 2098 0.393132 GGGCTTGGGCAGAGAGTAAC 60.393 60.000 0.00 0.00 40.87 2.50
1873 2099 1.562672 GGGGCTTGGGCAGAGAGTAA 61.563 60.000 0.00 0.00 40.87 2.24
1876 2102 2.833604 CTTGGGGCTTGGGCAGAGAG 62.834 65.000 0.00 0.00 40.87 3.20
1886 2112 0.038310 GGACTACTTGCTTGGGGCTT 59.962 55.000 0.00 0.00 42.39 4.35
1890 2116 3.947834 CCATTTAGGACTACTTGCTTGGG 59.052 47.826 0.00 0.00 41.22 4.12
1891 2117 4.843728 TCCATTTAGGACTACTTGCTTGG 58.156 43.478 0.00 0.00 43.07 3.61
1892 2118 5.734720 TCTCCATTTAGGACTACTTGCTTG 58.265 41.667 0.00 0.00 43.07 4.01
1893 2119 5.721960 TCTCTCCATTTAGGACTACTTGCTT 59.278 40.000 0.00 0.00 43.07 3.91
1899 2125 4.805744 TCCCTCTCTCCATTTAGGACTAC 58.194 47.826 0.00 0.00 43.07 2.73
1911 2137 1.181786 CACACACTCTCCCTCTCTCC 58.818 60.000 0.00 0.00 0.00 3.71
1913 2139 1.145945 TCACACACACTCTCCCTCTCT 59.854 52.381 0.00 0.00 0.00 3.10
1915 2141 1.333177 GTCACACACACTCTCCCTCT 58.667 55.000 0.00 0.00 0.00 3.69
1916 2142 0.318762 GGTCACACACACTCTCCCTC 59.681 60.000 0.00 0.00 0.00 4.30
1923 2149 2.044806 GCAGGAGGGTCACACACACT 62.045 60.000 0.00 0.00 43.86 3.55
1925 2151 1.766059 AGCAGGAGGGTCACACACA 60.766 57.895 0.00 0.00 0.00 3.72
1929 2155 1.451504 CAACAGCAGGAGGGTCACA 59.548 57.895 0.00 0.00 0.00 3.58
1938 2166 1.475280 ACATAAGCATGCAACAGCAGG 59.525 47.619 21.98 3.19 42.36 4.85
1942 2170 2.160219 ACGTCACATAAGCATGCAACAG 59.840 45.455 21.98 9.51 35.39 3.16
1953 2181 3.196901 AGCTAACCATCCACGTCACATAA 59.803 43.478 0.00 0.00 0.00 1.90
1955 2183 1.555075 AGCTAACCATCCACGTCACAT 59.445 47.619 0.00 0.00 0.00 3.21
1956 2184 0.973632 AGCTAACCATCCACGTCACA 59.026 50.000 0.00 0.00 0.00 3.58
1957 2185 2.481449 CCTAGCTAACCATCCACGTCAC 60.481 54.545 0.00 0.00 0.00 3.67
1960 2188 1.120530 CCCTAGCTAACCATCCACGT 58.879 55.000 0.00 0.00 0.00 4.49
1961 2189 0.249911 GCCCTAGCTAACCATCCACG 60.250 60.000 0.00 0.00 35.50 4.94
1962 2190 0.837272 TGCCCTAGCTAACCATCCAC 59.163 55.000 0.00 0.00 40.80 4.02
1977 2213 1.068816 GTTTGTAACCACGACATGCCC 60.069 52.381 0.00 0.00 0.00 5.36
1987 2223 6.350103 TGTTCACATGACTAGTTTGTAACCA 58.650 36.000 10.91 6.38 0.00 3.67
1991 2227 6.350103 TGGTTGTTCACATGACTAGTTTGTA 58.650 36.000 10.91 0.00 0.00 2.41
1997 2233 8.099364 ACTATTTTGGTTGTTCACATGACTAG 57.901 34.615 0.00 0.00 0.00 2.57
2030 2267 3.327464 TGAGAATTGAGACCACACCATCA 59.673 43.478 0.00 0.00 0.00 3.07
2042 2279 4.166523 CAGTGCATGCTTTGAGAATTGAG 58.833 43.478 20.33 0.00 0.00 3.02
2043 2280 4.168922 CAGTGCATGCTTTGAGAATTGA 57.831 40.909 20.33 0.00 0.00 2.57
2060 2297 2.086054 AAGAAGTTAGGCTCGCAGTG 57.914 50.000 0.00 0.00 0.00 3.66
2065 2302 6.590292 TGACTATGAAAAAGAAGTTAGGCTCG 59.410 38.462 0.00 0.00 0.00 5.03
2073 2310 9.788960 GAAAAACACTGACTATGAAAAAGAAGT 57.211 29.630 0.00 0.00 0.00 3.01
2076 2313 9.173021 TGAGAAAAACACTGACTATGAAAAAGA 57.827 29.630 0.00 0.00 0.00 2.52
2077 2314 9.956720 ATGAGAAAAACACTGACTATGAAAAAG 57.043 29.630 0.00 0.00 0.00 2.27
2080 2317 7.655732 TCGATGAGAAAAACACTGACTATGAAA 59.344 33.333 0.00 0.00 0.00 2.69
2084 2321 7.323420 TCATCGATGAGAAAAACACTGACTAT 58.677 34.615 23.99 0.00 32.11 2.12
2085 2322 6.687604 TCATCGATGAGAAAAACACTGACTA 58.312 36.000 23.99 0.00 32.11 2.59
2114 2353 4.790765 TGAGAGGATCATATAACCTGCG 57.209 45.455 0.00 0.00 37.82 5.18
2133 2372 3.495753 CGATGCTGTGCTAAATGCTATGA 59.504 43.478 0.00 0.00 43.37 2.15
2145 2384 2.212652 TGGTGATATTCGATGCTGTGC 58.787 47.619 0.00 0.00 0.00 4.57
2176 2415 2.613133 CAACACCAAAAATTGTGGGCTG 59.387 45.455 7.18 0.00 40.75 4.85
2183 2422 8.547069 ACAAAATATCGACAACACCAAAAATTG 58.453 29.630 0.00 0.00 0.00 2.32
2199 2438 6.915843 GGCCTGTTTATACCAACAAAATATCG 59.084 38.462 0.00 0.00 36.22 2.92
2228 2467 3.558931 TGAGCTTGAGTCCTTGACAAA 57.441 42.857 0.00 0.00 34.60 2.83
2236 2475 1.682257 AGCCCTTGAGCTTGAGTCC 59.318 57.895 0.00 0.00 41.41 3.85
2247 2486 8.400947 GCATGTGTCATAATATATAAGCCCTTG 58.599 37.037 0.00 0.00 0.00 3.61
2289 2532 8.702163 TCGTGATGCACCATAATATATTAGTG 57.298 34.615 15.57 15.57 0.00 2.74
2293 2536 9.453572 AGATTTCGTGATGCACCATAATATATT 57.546 29.630 2.97 2.97 0.00 1.28
2344 2589 1.393603 TTTTGTTGTGCGTCCATGGA 58.606 45.000 11.44 11.44 0.00 3.41
2369 2614 2.893489 AGCATAGACATCGCCACATCTA 59.107 45.455 0.00 0.00 0.00 1.98
2377 2622 3.790123 GCCTTTTCAAGCATAGACATCGC 60.790 47.826 0.00 0.00 0.00 4.58
2412 2657 1.070758 ACATCGTCTGTGGAGCAGTTT 59.929 47.619 0.00 0.00 45.23 2.66
2414 2659 0.681733 AACATCGTCTGTGGAGCAGT 59.318 50.000 0.00 0.00 45.23 4.40
2415 2660 1.728971 GAAACATCGTCTGTGGAGCAG 59.271 52.381 0.00 0.00 46.34 4.24
2417 2662 1.728971 CAGAAACATCGTCTGTGGAGC 59.271 52.381 0.00 0.00 38.39 4.70


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.