Multiple sequence alignment - TraesCS4A01G317200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G317200 chr4A 100.000 2406 0 0 1 2406 606607746 606610151 0.000000e+00 4444
1 TraesCS4A01G317200 chr4A 100.000 147 0 0 2861 3007 606610606 606610752 3.820000e-69 272
2 TraesCS4A01G317200 chr4A 79.375 320 49 11 50 360 606595508 606595819 3.040000e-50 209
3 TraesCS4A01G317200 chr4A 85.047 107 8 4 1899 2000 165364654 165364757 5.300000e-18 102
4 TraesCS4A01G317200 chr5D 93.932 1302 57 12 869 2155 565195832 565197126 0.000000e+00 1947
5 TraesCS4A01G317200 chr5D 95.531 716 22 6 1 713 565194849 565195557 0.000000e+00 1136
6 TraesCS4A01G317200 chr5D 83.134 836 105 17 1048 1858 565187094 565187918 0.000000e+00 730
7 TraesCS4A01G317200 chr5D 91.139 79 6 1 457 534 565195554 565195632 4.100000e-19 106
8 TraesCS4A01G317200 chr5B 90.546 1153 73 11 924 2043 708184402 708183253 0.000000e+00 1493
9 TraesCS4A01G317200 chr5B 89.525 611 40 9 1 604 708185659 708185066 0.000000e+00 752
10 TraesCS4A01G317200 chr5B 83.262 705 84 14 1054 1727 708189356 708188655 4.260000e-173 617
11 TraesCS4A01G317200 chr5B 93.233 133 9 0 685 817 708184586 708184454 2.360000e-46 196
12 TraesCS4A01G317200 chr1B 86.408 103 11 1 2906 3005 685502990 685502888 3.170000e-20 110


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G317200 chr4A 606607746 606610752 3006 False 2358.0 4444 100.0000 1 3007 2 chr4A.!!$F3 3006
1 TraesCS4A01G317200 chr5D 565194849 565197126 2277 False 1063.0 1947 93.5340 1 2155 3 chr5D.!!$F2 2154
2 TraesCS4A01G317200 chr5D 565187094 565187918 824 False 730.0 730 83.1340 1048 1858 1 chr5D.!!$F1 810
3 TraesCS4A01G317200 chr5B 708183253 708189356 6103 True 764.5 1493 89.1415 1 2043 4 chr5B.!!$R1 2042

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
854 5226 0.17897 GGCCTGGCTCATCATGGATT 60.179 55.0 19.68 0.0 0.0 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2190 6606 0.037326 GTCAGGTTGTGCCTCGATGA 60.037 55.0 0.0 0.0 46.96 2.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
539 4244 5.707298 TCTCCCAGTGATTAAAGAGCTTTTG 59.293 40.000 0.26 0.00 34.23 2.44
540 4245 4.766891 TCCCAGTGATTAAAGAGCTTTTGG 59.233 41.667 0.26 2.08 34.23 3.28
722 5094 2.038863 TGGTCCCTGTAGTGGAACAT 57.961 50.000 0.00 0.00 44.57 2.71
733 5105 2.242043 AGTGGAACATGAAGGCTTTGG 58.758 47.619 0.00 0.00 44.52 3.28
737 5109 3.153919 GGAACATGAAGGCTTTGGTGTA 58.846 45.455 0.00 0.00 0.00 2.90
799 5171 0.893447 ATCTGCAGCAAAGGGAAAGC 59.107 50.000 9.47 0.00 0.00 3.51
809 5181 2.878406 CAAAGGGAAAGCGTCTTCTTCA 59.122 45.455 0.00 0.00 0.00 3.02
811 5183 4.553330 AAGGGAAAGCGTCTTCTTCATA 57.447 40.909 0.00 0.00 0.00 2.15
831 5203 7.750229 TCATATTGAAGTAATGATGAAGGGC 57.250 36.000 0.00 0.00 0.00 5.19
832 5204 7.289310 TCATATTGAAGTAATGATGAAGGGCA 58.711 34.615 0.00 0.00 0.00 5.36
833 5205 7.446319 TCATATTGAAGTAATGATGAAGGGCAG 59.554 37.037 0.00 0.00 0.00 4.85
834 5206 3.889815 TGAAGTAATGATGAAGGGCAGG 58.110 45.455 0.00 0.00 0.00 4.85
835 5207 3.217626 GAAGTAATGATGAAGGGCAGGG 58.782 50.000 0.00 0.00 0.00 4.45
836 5208 1.496429 AGTAATGATGAAGGGCAGGGG 59.504 52.381 0.00 0.00 0.00 4.79
837 5209 0.185901 TAATGATGAAGGGCAGGGGC 59.814 55.000 0.00 0.00 40.13 5.80
847 5219 4.891037 GCAGGGGCCTGGCTCATC 62.891 72.222 22.16 3.44 43.77 2.92
848 5220 3.414193 CAGGGGCCTGGCTCATCA 61.414 66.667 22.16 0.00 40.17 3.07
849 5221 2.369291 AGGGGCCTGGCTCATCAT 60.369 61.111 22.16 0.00 0.00 2.45
850 5222 2.203451 GGGGCCTGGCTCATCATG 60.203 66.667 22.16 0.00 0.00 3.07
851 5223 2.203451 GGGCCTGGCTCATCATGG 60.203 66.667 19.68 0.00 0.00 3.66
852 5224 2.760378 GGGCCTGGCTCATCATGGA 61.760 63.158 19.68 0.00 0.00 3.41
853 5225 1.459369 GGCCTGGCTCATCATGGAT 59.541 57.895 19.68 0.00 0.00 3.41
854 5226 0.178970 GGCCTGGCTCATCATGGATT 60.179 55.000 19.68 0.00 0.00 3.01
855 5227 1.245732 GCCTGGCTCATCATGGATTC 58.754 55.000 12.43 0.00 0.00 2.52
856 5228 1.520494 CCTGGCTCATCATGGATTCG 58.480 55.000 0.00 0.00 0.00 3.34
857 5229 1.202734 CCTGGCTCATCATGGATTCGT 60.203 52.381 0.00 0.00 0.00 3.85
858 5230 1.871676 CTGGCTCATCATGGATTCGTG 59.128 52.381 0.00 0.00 0.00 4.35
859 5231 1.233019 GGCTCATCATGGATTCGTGG 58.767 55.000 0.00 0.00 0.00 4.94
860 5232 0.590195 GCTCATCATGGATTCGTGGC 59.410 55.000 0.00 0.00 0.00 5.01
861 5233 1.813092 GCTCATCATGGATTCGTGGCT 60.813 52.381 0.00 0.00 0.00 4.75
862 5234 1.871676 CTCATCATGGATTCGTGGCTG 59.128 52.381 0.00 0.00 0.00 4.85
863 5235 0.949397 CATCATGGATTCGTGGCTGG 59.051 55.000 0.00 0.00 0.00 4.85
864 5236 0.179009 ATCATGGATTCGTGGCTGGG 60.179 55.000 0.00 0.00 0.00 4.45
865 5237 2.124151 ATGGATTCGTGGCTGGGC 60.124 61.111 0.00 0.00 0.00 5.36
880 5252 1.136305 CTGGGCCAGATCAATGCAAAG 59.864 52.381 29.96 0.00 32.44 2.77
882 5254 1.826720 GGGCCAGATCAATGCAAAGAA 59.173 47.619 4.39 0.00 0.00 2.52
886 5258 4.939439 GGCCAGATCAATGCAAAGAAAATT 59.061 37.500 0.00 0.00 0.00 1.82
892 5264 9.414295 CAGATCAATGCAAAGAAAATTGACTTA 57.586 29.630 0.00 0.00 41.67 2.24
989 5364 0.448197 GGCGTAAAGAAGCAGCTTCC 59.552 55.000 28.34 14.03 40.98 3.46
990 5365 0.448197 GCGTAAAGAAGCAGCTTCCC 59.552 55.000 28.34 14.59 40.98 3.97
1280 5662 0.035317 TCATCGTGAACCTGCAGCTT 59.965 50.000 8.66 0.00 0.00 3.74
1533 5915 4.113815 CAATCTCCTGCCCGCCCA 62.114 66.667 0.00 0.00 0.00 5.36
1620 6024 5.221126 GCATCAGGATCAATTTCAGGGTTAC 60.221 44.000 0.00 0.00 0.00 2.50
1649 6054 3.805422 AGATTTGTTGTGCAATGCAAGTG 59.195 39.130 10.44 0.00 41.47 3.16
1758 6163 5.692204 CACTGTCGTAAGTGTCTCATTTCTT 59.308 40.000 10.77 0.00 42.21 2.52
1759 6164 5.692204 ACTGTCGTAAGTGTCTCATTTCTTG 59.308 40.000 0.00 0.00 39.48 3.02
1837 6242 4.495019 CGGTCTGATTAGTCTCAAGAGTCG 60.495 50.000 0.00 0.00 0.00 4.18
1885 6291 6.710611 CGGGTCGAAATTCATTTTTGTTTTT 58.289 32.000 0.00 0.00 31.56 1.94
1931 6337 4.917415 GTGGCAACTTTGATATCAACACAC 59.083 41.667 17.76 14.77 35.28 3.82
1979 6390 8.084684 GGTAACTTTTCAAGATGAATTTGCTCT 58.915 33.333 0.00 0.00 36.11 4.09
2012 6423 4.574599 AAGAAAGTTGCCATTGTGTCTC 57.425 40.909 0.00 0.00 0.00 3.36
2014 6425 3.817647 AGAAAGTTGCCATTGTGTCTCTC 59.182 43.478 0.00 0.00 0.00 3.20
2028 6439 3.804873 GTGTCTCTCTCAAAGTTGTCACC 59.195 47.826 0.00 0.00 0.00 4.02
2038 6449 3.926821 AAGTTGTCACCGTGTTTGTTT 57.073 38.095 0.00 0.00 0.00 2.83
2040 6451 3.078837 AGTTGTCACCGTGTTTGTTTCT 58.921 40.909 0.00 0.00 0.00 2.52
2102 6518 8.598041 AGGTGGCAAATTAAATACAAATACCAA 58.402 29.630 0.00 0.00 0.00 3.67
2139 6555 7.677454 AATTACTAGGTGGAAACGTTTAAGG 57.323 36.000 14.65 3.22 0.00 2.69
2155 6571 5.061064 CGTTTAAGGTGATTCTTCTCTGTCG 59.939 44.000 0.00 0.00 0.00 4.35
2156 6572 5.977489 TTAAGGTGATTCTTCTCTGTCGA 57.023 39.130 0.00 0.00 0.00 4.20
2157 6573 4.873746 AAGGTGATTCTTCTCTGTCGAA 57.126 40.909 0.00 0.00 0.00 3.71
2158 6574 4.873746 AGGTGATTCTTCTCTGTCGAAA 57.126 40.909 0.00 0.00 0.00 3.46
2159 6575 5.413309 AGGTGATTCTTCTCTGTCGAAAT 57.587 39.130 0.00 0.00 0.00 2.17
2160 6576 5.415221 AGGTGATTCTTCTCTGTCGAAATC 58.585 41.667 0.00 0.00 0.00 2.17
2161 6577 5.186797 AGGTGATTCTTCTCTGTCGAAATCT 59.813 40.000 0.00 0.00 0.00 2.40
2162 6578 6.378564 AGGTGATTCTTCTCTGTCGAAATCTA 59.621 38.462 0.00 0.00 0.00 1.98
2163 6579 6.474102 GGTGATTCTTCTCTGTCGAAATCTAC 59.526 42.308 0.00 0.00 0.00 2.59
2164 6580 7.030165 GTGATTCTTCTCTGTCGAAATCTACA 58.970 38.462 0.00 0.00 0.00 2.74
2165 6581 7.008810 GTGATTCTTCTCTGTCGAAATCTACAC 59.991 40.741 0.00 0.00 0.00 2.90
2166 6582 5.959618 TCTTCTCTGTCGAAATCTACACA 57.040 39.130 0.00 0.00 0.00 3.72
2167 6583 5.944013 TCTTCTCTGTCGAAATCTACACAG 58.056 41.667 0.00 0.00 38.09 3.66
2168 6584 5.705905 TCTTCTCTGTCGAAATCTACACAGA 59.294 40.000 0.00 0.00 42.34 3.41
2169 6585 5.298197 TCTCTGTCGAAATCTACACAGAC 57.702 43.478 0.00 0.00 40.25 3.51
2170 6586 4.760204 TCTCTGTCGAAATCTACACAGACA 59.240 41.667 0.00 0.00 40.25 3.41
2171 6587 5.416013 TCTCTGTCGAAATCTACACAGACAT 59.584 40.000 0.00 0.00 40.25 3.06
2172 6588 5.402398 TCTGTCGAAATCTACACAGACATG 58.598 41.667 0.00 0.00 40.25 3.21
2173 6589 5.183140 TCTGTCGAAATCTACACAGACATGA 59.817 40.000 0.00 0.00 40.25 3.07
2174 6590 5.965922 TGTCGAAATCTACACAGACATGAT 58.034 37.500 0.00 0.00 34.24 2.45
2175 6591 6.036470 TGTCGAAATCTACACAGACATGATC 58.964 40.000 0.00 0.00 34.24 2.92
2176 6592 6.127619 TGTCGAAATCTACACAGACATGATCT 60.128 38.462 0.00 0.00 38.66 2.75
2177 6593 7.067008 TGTCGAAATCTACACAGACATGATCTA 59.933 37.037 0.00 0.00 35.15 1.98
2178 6594 7.589587 GTCGAAATCTACACAGACATGATCTAG 59.410 40.741 0.00 0.00 35.15 2.43
2179 6595 7.283354 TCGAAATCTACACAGACATGATCTAGT 59.717 37.037 0.00 4.17 35.15 2.57
2180 6596 8.560374 CGAAATCTACACAGACATGATCTAGTA 58.440 37.037 0.00 5.03 35.15 1.82
2183 6599 9.579932 AATCTACACAGACATGATCTAGTATCA 57.420 33.333 0.00 7.15 35.15 2.15
2184 6600 8.980481 TCTACACAGACATGATCTAGTATCAA 57.020 34.615 0.00 0.00 35.15 2.57
2185 6601 9.408648 TCTACACAGACATGATCTAGTATCAAA 57.591 33.333 0.00 0.00 35.15 2.69
2188 6604 8.922237 ACACAGACATGATCTAGTATCAAATCT 58.078 33.333 0.00 10.20 35.15 2.40
2189 6605 9.409312 CACAGACATGATCTAGTATCAAATCTC 57.591 37.037 0.00 3.25 35.15 2.75
2190 6606 9.365906 ACAGACATGATCTAGTATCAAATCTCT 57.634 33.333 0.00 4.79 35.15 3.10
2191 6607 9.844790 CAGACATGATCTAGTATCAAATCTCTC 57.155 37.037 0.00 0.00 35.15 3.20
2192 6608 9.585369 AGACATGATCTAGTATCAAATCTCTCA 57.415 33.333 0.00 0.00 35.15 3.27
2195 6611 9.505995 CATGATCTAGTATCAAATCTCTCATCG 57.494 37.037 8.36 0.00 0.00 3.84
2196 6612 8.854614 TGATCTAGTATCAAATCTCTCATCGA 57.145 34.615 0.00 0.00 0.00 3.59
2197 6613 8.945057 TGATCTAGTATCAAATCTCTCATCGAG 58.055 37.037 0.00 0.00 41.30 4.04
2198 6614 7.680442 TCTAGTATCAAATCTCTCATCGAGG 57.320 40.000 0.00 0.00 40.30 4.63
2199 6615 5.132897 AGTATCAAATCTCTCATCGAGGC 57.867 43.478 0.00 0.00 40.30 4.70
2200 6616 4.586421 AGTATCAAATCTCTCATCGAGGCA 59.414 41.667 0.00 0.00 40.30 4.75
2201 6617 3.170791 TCAAATCTCTCATCGAGGCAC 57.829 47.619 0.00 0.00 40.30 5.01
2202 6618 2.497273 TCAAATCTCTCATCGAGGCACA 59.503 45.455 0.00 0.00 40.30 4.57
2203 6619 3.055891 TCAAATCTCTCATCGAGGCACAA 60.056 43.478 0.00 0.00 40.30 3.33
2204 6620 2.593346 ATCTCTCATCGAGGCACAAC 57.407 50.000 0.00 0.00 40.30 3.32
2205 6621 0.532573 TCTCTCATCGAGGCACAACC 59.467 55.000 0.00 0.00 40.30 3.77
2214 6630 2.110213 GGCACAACCTGACGGTGA 59.890 61.111 0.00 0.00 44.73 4.02
2215 6631 1.525077 GGCACAACCTGACGGTGAA 60.525 57.895 0.00 0.00 44.73 3.18
2216 6632 1.507141 GGCACAACCTGACGGTGAAG 61.507 60.000 0.00 0.00 44.73 3.02
2217 6633 0.531974 GCACAACCTGACGGTGAAGA 60.532 55.000 0.00 0.00 44.73 2.87
2218 6634 1.217882 CACAACCTGACGGTGAAGAC 58.782 55.000 0.00 0.00 44.73 3.01
2219 6635 0.249322 ACAACCTGACGGTGAAGACG 60.249 55.000 0.00 0.00 44.73 4.18
2220 6636 0.944311 CAACCTGACGGTGAAGACGG 60.944 60.000 0.00 0.00 44.73 4.79
2221 6637 1.111116 AACCTGACGGTGAAGACGGA 61.111 55.000 0.00 0.00 44.73 4.69
2222 6638 0.898789 ACCTGACGGTGAAGACGGAT 60.899 55.000 0.00 0.00 43.51 4.18
2223 6639 0.179134 CCTGACGGTGAAGACGGATC 60.179 60.000 0.00 0.00 35.23 3.36
2224 6640 0.523546 CTGACGGTGAAGACGGATCG 60.524 60.000 0.00 0.00 35.23 3.69
2225 6641 1.239296 TGACGGTGAAGACGGATCGT 61.239 55.000 0.00 0.00 45.10 3.73
2226 6642 0.109412 GACGGTGAAGACGGATCGTT 60.109 55.000 0.00 0.00 41.37 3.85
2227 6643 1.131126 GACGGTGAAGACGGATCGTTA 59.869 52.381 0.00 0.00 41.37 3.18
2228 6644 1.541147 ACGGTGAAGACGGATCGTTAA 59.459 47.619 0.00 0.00 41.37 2.01
2229 6645 2.165030 ACGGTGAAGACGGATCGTTAAT 59.835 45.455 0.00 0.00 41.37 1.40
2230 6646 2.787680 CGGTGAAGACGGATCGTTAATC 59.212 50.000 0.00 0.00 41.37 1.75
2231 6647 2.787680 GGTGAAGACGGATCGTTAATCG 59.212 50.000 0.00 0.00 41.37 3.34
2232 6648 2.787680 GTGAAGACGGATCGTTAATCGG 59.212 50.000 0.00 0.00 41.37 4.18
2233 6649 2.684374 TGAAGACGGATCGTTAATCGGA 59.316 45.455 0.00 0.00 41.37 4.55
2234 6650 3.317149 TGAAGACGGATCGTTAATCGGAT 59.683 43.478 0.00 0.00 41.37 4.18
2235 6651 4.516321 TGAAGACGGATCGTTAATCGGATA 59.484 41.667 0.00 0.00 41.37 2.59
2236 6652 4.416505 AGACGGATCGTTAATCGGATAC 57.583 45.455 0.00 0.00 41.37 2.24
2237 6653 3.190118 AGACGGATCGTTAATCGGATACC 59.810 47.826 0.00 0.00 41.37 2.73
2238 6654 3.152341 ACGGATCGTTAATCGGATACCT 58.848 45.455 0.00 0.00 36.35 3.08
2239 6655 3.057736 ACGGATCGTTAATCGGATACCTG 60.058 47.826 0.00 0.00 36.35 4.00
2240 6656 3.057736 CGGATCGTTAATCGGATACCTGT 60.058 47.826 0.00 0.00 36.97 4.00
2241 6657 4.558095 CGGATCGTTAATCGGATACCTGTT 60.558 45.833 0.00 0.00 36.97 3.16
2242 6658 5.295152 GGATCGTTAATCGGATACCTGTTT 58.705 41.667 0.00 0.00 40.32 2.83
2243 6659 5.404667 GGATCGTTAATCGGATACCTGTTTC 59.595 44.000 0.00 0.00 40.32 2.78
2244 6660 5.327616 TCGTTAATCGGATACCTGTTTCA 57.672 39.130 0.00 0.00 40.32 2.69
2245 6661 5.345702 TCGTTAATCGGATACCTGTTTCAG 58.654 41.667 0.00 0.00 40.32 3.02
2246 6662 5.125900 TCGTTAATCGGATACCTGTTTCAGA 59.874 40.000 0.00 0.00 40.32 3.27
2247 6663 5.459107 CGTTAATCGGATACCTGTTTCAGAG 59.541 44.000 0.00 0.00 32.66 3.35
2248 6664 6.338937 GTTAATCGGATACCTGTTTCAGAGT 58.661 40.000 0.00 0.00 32.44 3.24
2249 6665 5.422214 AATCGGATACCTGTTTCAGAGTT 57.578 39.130 0.00 0.00 32.44 3.01
2250 6666 6.540438 AATCGGATACCTGTTTCAGAGTTA 57.460 37.500 0.00 0.00 32.44 2.24
2251 6667 5.988310 TCGGATACCTGTTTCAGAGTTAA 57.012 39.130 0.00 0.00 32.44 2.01
2252 6668 6.349243 TCGGATACCTGTTTCAGAGTTAAA 57.651 37.500 0.00 0.00 32.44 1.52
2253 6669 6.761312 TCGGATACCTGTTTCAGAGTTAAAA 58.239 36.000 0.00 0.00 32.44 1.52
2254 6670 6.647895 TCGGATACCTGTTTCAGAGTTAAAAC 59.352 38.462 0.00 0.00 36.21 2.43
2255 6671 6.425721 CGGATACCTGTTTCAGAGTTAAAACA 59.574 38.462 0.00 0.00 41.67 2.83
2256 6672 7.119262 CGGATACCTGTTTCAGAGTTAAAACAT 59.881 37.037 1.58 0.00 42.62 2.71
2257 6673 8.793592 GGATACCTGTTTCAGAGTTAAAACATT 58.206 33.333 1.58 0.00 42.62 2.71
2259 6675 9.965824 ATACCTGTTTCAGAGTTAAAACATTTG 57.034 29.630 1.58 0.00 42.62 2.32
2260 6676 8.062065 ACCTGTTTCAGAGTTAAAACATTTGA 57.938 30.769 1.58 0.00 42.62 2.69
2261 6677 8.527810 ACCTGTTTCAGAGTTAAAACATTTGAA 58.472 29.630 1.58 0.31 42.62 2.69
2262 6678 9.364989 CCTGTTTCAGAGTTAAAACATTTGAAA 57.635 29.630 11.80 11.80 42.62 2.69
2282 6698 9.761504 TTTGAAAATGTTGAAGAGCATTTATGA 57.238 25.926 0.00 0.00 42.39 2.15
2283 6699 9.932207 TTGAAAATGTTGAAGAGCATTTATGAT 57.068 25.926 0.00 0.00 42.39 2.45
2284 6700 9.361315 TGAAAATGTTGAAGAGCATTTATGATG 57.639 29.630 0.00 0.00 42.39 3.07
2285 6701 7.766219 AAATGTTGAAGAGCATTTATGATGC 57.234 32.000 7.57 7.57 41.70 3.91
2286 6702 5.252969 TGTTGAAGAGCATTTATGATGCC 57.747 39.130 11.04 4.91 45.59 4.40
2287 6703 4.201940 TGTTGAAGAGCATTTATGATGCCG 60.202 41.667 11.04 0.00 45.59 5.69
2288 6704 3.544684 TGAAGAGCATTTATGATGCCGT 58.455 40.909 11.04 3.57 45.59 5.68
2289 6705 3.947196 TGAAGAGCATTTATGATGCCGTT 59.053 39.130 11.04 6.27 45.59 4.44
2290 6706 3.976793 AGAGCATTTATGATGCCGTTG 57.023 42.857 11.04 0.00 45.59 4.10
2291 6707 3.282021 AGAGCATTTATGATGCCGTTGT 58.718 40.909 11.04 0.00 45.59 3.32
2292 6708 3.313526 AGAGCATTTATGATGCCGTTGTC 59.686 43.478 11.04 4.04 45.59 3.18
2293 6709 3.016031 AGCATTTATGATGCCGTTGTCA 58.984 40.909 11.04 0.00 45.59 3.58
2294 6710 3.633525 AGCATTTATGATGCCGTTGTCAT 59.366 39.130 11.04 0.00 45.59 3.06
2295 6711 4.098349 AGCATTTATGATGCCGTTGTCATT 59.902 37.500 11.04 0.00 45.59 2.57
2296 6712 4.207635 GCATTTATGATGCCGTTGTCATTG 59.792 41.667 4.94 0.00 39.01 2.82
2297 6713 3.419264 TTATGATGCCGTTGTCATTGC 57.581 42.857 0.00 0.00 36.53 3.56
2298 6714 0.457035 ATGATGCCGTTGTCATTGCC 59.543 50.000 0.00 0.00 31.26 4.52
2299 6715 0.608856 TGATGCCGTTGTCATTGCCT 60.609 50.000 0.00 0.00 0.00 4.75
2300 6716 0.527565 GATGCCGTTGTCATTGCCTT 59.472 50.000 0.00 0.00 0.00 4.35
2301 6717 0.968405 ATGCCGTTGTCATTGCCTTT 59.032 45.000 0.00 0.00 0.00 3.11
2302 6718 0.749649 TGCCGTTGTCATTGCCTTTT 59.250 45.000 0.00 0.00 0.00 2.27
2303 6719 1.137872 TGCCGTTGTCATTGCCTTTTT 59.862 42.857 0.00 0.00 0.00 1.94
2304 6720 2.362397 TGCCGTTGTCATTGCCTTTTTA 59.638 40.909 0.00 0.00 0.00 1.52
2305 6721 3.006323 TGCCGTTGTCATTGCCTTTTTAT 59.994 39.130 0.00 0.00 0.00 1.40
2306 6722 3.612423 GCCGTTGTCATTGCCTTTTTATC 59.388 43.478 0.00 0.00 0.00 1.75
2307 6723 4.173256 CCGTTGTCATTGCCTTTTTATCC 58.827 43.478 0.00 0.00 0.00 2.59
2308 6724 4.082245 CCGTTGTCATTGCCTTTTTATCCT 60.082 41.667 0.00 0.00 0.00 3.24
2309 6725 5.095490 CGTTGTCATTGCCTTTTTATCCTC 58.905 41.667 0.00 0.00 0.00 3.71
2310 6726 5.410924 GTTGTCATTGCCTTTTTATCCTCC 58.589 41.667 0.00 0.00 0.00 4.30
2311 6727 4.023291 TGTCATTGCCTTTTTATCCTCCC 58.977 43.478 0.00 0.00 0.00 4.30
2312 6728 4.023291 GTCATTGCCTTTTTATCCTCCCA 58.977 43.478 0.00 0.00 0.00 4.37
2313 6729 4.023291 TCATTGCCTTTTTATCCTCCCAC 58.977 43.478 0.00 0.00 0.00 4.61
2314 6730 2.122783 TGCCTTTTTATCCTCCCACG 57.877 50.000 0.00 0.00 0.00 4.94
2315 6731 0.738975 GCCTTTTTATCCTCCCACGC 59.261 55.000 0.00 0.00 0.00 5.34
2316 6732 1.953311 GCCTTTTTATCCTCCCACGCA 60.953 52.381 0.00 0.00 0.00 5.24
2317 6733 2.654863 CCTTTTTATCCTCCCACGCAT 58.345 47.619 0.00 0.00 0.00 4.73
2318 6734 3.023832 CCTTTTTATCCTCCCACGCATT 58.976 45.455 0.00 0.00 0.00 3.56
2319 6735 3.066760 CCTTTTTATCCTCCCACGCATTC 59.933 47.826 0.00 0.00 0.00 2.67
2320 6736 2.341846 TTTATCCTCCCACGCATTCC 57.658 50.000 0.00 0.00 0.00 3.01
2321 6737 1.208706 TTATCCTCCCACGCATTCCA 58.791 50.000 0.00 0.00 0.00 3.53
2322 6738 1.434188 TATCCTCCCACGCATTCCAT 58.566 50.000 0.00 0.00 0.00 3.41
2323 6739 0.179009 ATCCTCCCACGCATTCCATG 60.179 55.000 0.00 0.00 0.00 3.66
2336 6752 3.961182 CATTCCATGCTGCATGTAAGAC 58.039 45.455 33.35 0.00 39.94 3.01
2337 6753 1.655484 TCCATGCTGCATGTAAGACG 58.345 50.000 33.35 20.63 39.94 4.18
2338 6754 1.066215 TCCATGCTGCATGTAAGACGT 60.066 47.619 33.35 1.29 39.94 4.34
2339 6755 1.739466 CCATGCTGCATGTAAGACGTT 59.261 47.619 33.35 0.53 39.94 3.99
2340 6756 2.476686 CCATGCTGCATGTAAGACGTTG 60.477 50.000 33.35 16.07 39.94 4.10
2341 6757 2.162319 TGCTGCATGTAAGACGTTGA 57.838 45.000 0.00 0.00 0.00 3.18
2342 6758 2.068519 TGCTGCATGTAAGACGTTGAG 58.931 47.619 0.00 0.00 0.00 3.02
2343 6759 1.201965 GCTGCATGTAAGACGTTGAGC 60.202 52.381 0.00 0.00 0.00 4.26
2345 6761 0.370273 GCATGTAAGACGTTGAGCGG 59.630 55.000 0.00 0.00 46.52 5.52
2346 6762 0.999406 CATGTAAGACGTTGAGCGGG 59.001 55.000 0.00 0.00 46.52 6.13
2347 6763 0.108329 ATGTAAGACGTTGAGCGGGG 60.108 55.000 0.00 0.00 46.52 5.73
2348 6764 2.098831 GTAAGACGTTGAGCGGGGC 61.099 63.158 0.00 0.00 46.52 5.80
2349 6765 2.280552 TAAGACGTTGAGCGGGGCT 61.281 57.895 0.00 0.00 46.52 5.19
2366 6782 2.588027 GCTCACTAGCTAGGGAACAC 57.412 55.000 25.47 14.55 45.85 3.32
2367 6783 2.104170 GCTCACTAGCTAGGGAACACT 58.896 52.381 25.47 0.00 45.85 3.55
2368 6784 2.100087 GCTCACTAGCTAGGGAACACTC 59.900 54.545 25.47 9.52 45.85 3.51
2369 6785 2.356382 CTCACTAGCTAGGGAACACTCG 59.644 54.545 25.47 9.95 34.88 4.18
2370 6786 1.104630 ACTAGCTAGGGAACACTCGC 58.895 55.000 24.35 0.00 34.75 5.03
2371 6787 1.341187 ACTAGCTAGGGAACACTCGCT 60.341 52.381 24.35 8.09 46.05 4.93
2372 6788 1.335496 CTAGCTAGGGAACACTCGCTC 59.665 57.143 13.32 0.00 43.41 5.03
2373 6789 1.142097 GCTAGGGAACACTCGCTCC 59.858 63.158 0.00 0.00 43.41 4.70
2376 6792 4.029472 GGGAACACTCGCTCCCTA 57.971 61.111 0.00 0.00 46.91 3.53
2377 6793 2.517609 GGGAACACTCGCTCCCTAT 58.482 57.895 0.00 0.00 46.91 2.57
2378 6794 0.831307 GGGAACACTCGCTCCCTATT 59.169 55.000 0.00 0.00 46.91 1.73
2379 6795 2.037144 GGGAACACTCGCTCCCTATTA 58.963 52.381 0.00 0.00 46.91 0.98
2380 6796 2.433239 GGGAACACTCGCTCCCTATTAA 59.567 50.000 0.00 0.00 46.91 1.40
2381 6797 3.455327 GGAACACTCGCTCCCTATTAAC 58.545 50.000 0.00 0.00 0.00 2.01
2382 6798 2.865343 ACACTCGCTCCCTATTAACG 57.135 50.000 0.00 0.00 0.00 3.18
2383 6799 2.097825 ACACTCGCTCCCTATTAACGT 58.902 47.619 0.00 0.00 0.00 3.99
2384 6800 2.494870 ACACTCGCTCCCTATTAACGTT 59.505 45.455 5.88 5.88 0.00 3.99
2385 6801 3.114065 CACTCGCTCCCTATTAACGTTC 58.886 50.000 2.82 0.00 0.00 3.95
2386 6802 3.022406 ACTCGCTCCCTATTAACGTTCT 58.978 45.455 2.82 0.00 0.00 3.01
2387 6803 3.446516 ACTCGCTCCCTATTAACGTTCTT 59.553 43.478 2.82 0.00 0.00 2.52
2388 6804 4.037858 TCGCTCCCTATTAACGTTCTTC 57.962 45.455 2.82 0.00 0.00 2.87
2389 6805 3.698040 TCGCTCCCTATTAACGTTCTTCT 59.302 43.478 2.82 0.00 0.00 2.85
2390 6806 4.043073 CGCTCCCTATTAACGTTCTTCTC 58.957 47.826 2.82 0.00 0.00 2.87
2391 6807 4.202030 CGCTCCCTATTAACGTTCTTCTCT 60.202 45.833 2.82 0.00 0.00 3.10
2392 6808 5.662456 GCTCCCTATTAACGTTCTTCTCTT 58.338 41.667 2.82 0.00 0.00 2.85
2393 6809 6.107343 GCTCCCTATTAACGTTCTTCTCTTT 58.893 40.000 2.82 0.00 0.00 2.52
2394 6810 6.256104 GCTCCCTATTAACGTTCTTCTCTTTC 59.744 42.308 2.82 0.00 0.00 2.62
2395 6811 7.477945 TCCCTATTAACGTTCTTCTCTTTCT 57.522 36.000 2.82 0.00 0.00 2.52
2396 6812 7.545489 TCCCTATTAACGTTCTTCTCTTTCTC 58.455 38.462 2.82 0.00 0.00 2.87
2397 6813 7.177921 TCCCTATTAACGTTCTTCTCTTTCTCA 59.822 37.037 2.82 0.00 0.00 3.27
2398 6814 7.275999 CCCTATTAACGTTCTTCTCTTTCTCAC 59.724 40.741 2.82 0.00 0.00 3.51
2399 6815 8.030106 CCTATTAACGTTCTTCTCTTTCTCACT 58.970 37.037 2.82 0.00 0.00 3.41
2400 6816 7.644986 ATTAACGTTCTTCTCTTTCTCACTG 57.355 36.000 2.82 0.00 0.00 3.66
2401 6817 4.657436 ACGTTCTTCTCTTTCTCACTGT 57.343 40.909 0.00 0.00 0.00 3.55
2402 6818 5.769484 ACGTTCTTCTCTTTCTCACTGTA 57.231 39.130 0.00 0.00 0.00 2.74
2403 6819 6.145338 ACGTTCTTCTCTTTCTCACTGTAA 57.855 37.500 0.00 0.00 0.00 2.41
2404 6820 6.570692 ACGTTCTTCTCTTTCTCACTGTAAA 58.429 36.000 0.00 0.00 0.00 2.01
2405 6821 7.210873 ACGTTCTTCTCTTTCTCACTGTAAAT 58.789 34.615 0.00 0.00 0.00 1.40
2880 7296 3.121738 CCCCCGAAATACACTCATACC 57.878 52.381 0.00 0.00 0.00 2.73
2881 7297 2.547218 CCCCCGAAATACACTCATACCG 60.547 54.545 0.00 0.00 0.00 4.02
2882 7298 2.363038 CCCCGAAATACACTCATACCGA 59.637 50.000 0.00 0.00 0.00 4.69
2884 7300 3.552273 CCCGAAATACACTCATACCGAGG 60.552 52.174 0.00 0.00 46.98 4.63
2885 7301 3.317149 CCGAAATACACTCATACCGAGGA 59.683 47.826 0.00 0.00 46.98 3.71
2886 7302 4.202080 CCGAAATACACTCATACCGAGGAA 60.202 45.833 0.00 0.00 46.98 3.36
2887 7303 5.345702 CGAAATACACTCATACCGAGGAAA 58.654 41.667 0.00 0.00 46.98 3.13
2888 7304 5.231568 CGAAATACACTCATACCGAGGAAAC 59.768 44.000 0.00 0.00 46.98 2.78
2889 7305 5.670792 AATACACTCATACCGAGGAAACA 57.329 39.130 0.00 0.00 46.98 2.83
2890 7306 5.670792 ATACACTCATACCGAGGAAACAA 57.329 39.130 0.00 0.00 46.98 2.83
2891 7307 4.345859 ACACTCATACCGAGGAAACAAA 57.654 40.909 0.00 0.00 46.98 2.83
2892 7308 4.906618 ACACTCATACCGAGGAAACAAAT 58.093 39.130 0.00 0.00 46.98 2.32
2893 7309 5.313712 ACACTCATACCGAGGAAACAAATT 58.686 37.500 0.00 0.00 46.98 1.82
2894 7310 5.411669 ACACTCATACCGAGGAAACAAATTC 59.588 40.000 0.00 0.00 46.98 2.17
2895 7311 5.411361 CACTCATACCGAGGAAACAAATTCA 59.589 40.000 0.00 0.00 46.98 2.57
2896 7312 6.001460 ACTCATACCGAGGAAACAAATTCAA 58.999 36.000 0.00 0.00 46.98 2.69
2897 7313 6.488683 ACTCATACCGAGGAAACAAATTCAAA 59.511 34.615 0.00 0.00 46.98 2.69
2898 7314 7.176690 ACTCATACCGAGGAAACAAATTCAAAT 59.823 33.333 0.00 0.00 46.98 2.32
2899 7315 8.568676 TCATACCGAGGAAACAAATTCAAATA 57.431 30.769 0.00 0.00 39.98 1.40
2900 7316 9.184523 TCATACCGAGGAAACAAATTCAAATAT 57.815 29.630 0.00 0.00 39.98 1.28
2901 7317 9.801873 CATACCGAGGAAACAAATTCAAATATT 57.198 29.630 0.00 0.00 39.98 1.28
2931 7347 6.822073 AAAAATTGAACTCAAACGCTAACC 57.178 33.333 0.00 0.00 39.55 2.85
2932 7348 5.767816 AAATTGAACTCAAACGCTAACCT 57.232 34.783 0.00 0.00 39.55 3.50
2933 7349 5.767816 AATTGAACTCAAACGCTAACCTT 57.232 34.783 0.00 0.00 39.55 3.50
2934 7350 4.806342 TTGAACTCAAACGCTAACCTTC 57.194 40.909 0.00 0.00 32.11 3.46
2935 7351 4.067972 TGAACTCAAACGCTAACCTTCT 57.932 40.909 0.00 0.00 0.00 2.85
2936 7352 5.204409 TGAACTCAAACGCTAACCTTCTA 57.796 39.130 0.00 0.00 0.00 2.10
2937 7353 5.227908 TGAACTCAAACGCTAACCTTCTAG 58.772 41.667 0.00 0.00 0.00 2.43
2938 7354 4.868314 ACTCAAACGCTAACCTTCTAGT 57.132 40.909 0.00 0.00 0.00 2.57
2939 7355 5.211174 ACTCAAACGCTAACCTTCTAGTT 57.789 39.130 0.00 0.00 0.00 2.24
2940 7356 6.336842 ACTCAAACGCTAACCTTCTAGTTA 57.663 37.500 0.00 0.00 0.00 2.24
2941 7357 6.752168 ACTCAAACGCTAACCTTCTAGTTAA 58.248 36.000 0.00 0.00 32.02 2.01
2942 7358 7.212274 ACTCAAACGCTAACCTTCTAGTTAAA 58.788 34.615 0.00 0.00 32.02 1.52
2943 7359 7.876582 ACTCAAACGCTAACCTTCTAGTTAAAT 59.123 33.333 0.00 0.00 32.02 1.40
2944 7360 9.362539 CTCAAACGCTAACCTTCTAGTTAAATA 57.637 33.333 0.00 0.00 32.02 1.40
2945 7361 9.880157 TCAAACGCTAACCTTCTAGTTAAATAT 57.120 29.630 0.00 0.00 32.02 1.28
2949 7365 9.924650 ACGCTAACCTTCTAGTTAAATATATGG 57.075 33.333 0.00 0.51 32.02 2.74
2950 7366 8.870879 CGCTAACCTTCTAGTTAAATATATGGC 58.129 37.037 0.00 0.00 32.02 4.40
2951 7367 9.720769 GCTAACCTTCTAGTTAAATATATGGCA 57.279 33.333 0.00 0.00 32.02 4.92
2969 7385 5.546621 TGGCATCTCTACTATAACAACCC 57.453 43.478 0.00 0.00 0.00 4.11
2970 7386 5.216622 TGGCATCTCTACTATAACAACCCT 58.783 41.667 0.00 0.00 0.00 4.34
2971 7387 6.378745 TGGCATCTCTACTATAACAACCCTA 58.621 40.000 0.00 0.00 0.00 3.53
2972 7388 6.267014 TGGCATCTCTACTATAACAACCCTAC 59.733 42.308 0.00 0.00 0.00 3.18
2973 7389 6.494146 GGCATCTCTACTATAACAACCCTACT 59.506 42.308 0.00 0.00 0.00 2.57
2974 7390 7.668886 GGCATCTCTACTATAACAACCCTACTA 59.331 40.741 0.00 0.00 0.00 1.82
2975 7391 8.732531 GCATCTCTACTATAACAACCCTACTAG 58.267 40.741 0.00 0.00 0.00 2.57
2976 7392 9.796180 CATCTCTACTATAACAACCCTACTAGT 57.204 37.037 0.00 0.00 0.00 2.57
2978 7394 8.996655 TCTCTACTATAACAACCCTACTAGTCA 58.003 37.037 0.00 0.00 0.00 3.41
2979 7395 9.796180 CTCTACTATAACAACCCTACTAGTCAT 57.204 37.037 0.00 0.00 0.00 3.06
2980 7396 9.570468 TCTACTATAACAACCCTACTAGTCATG 57.430 37.037 0.00 0.00 0.00 3.07
2981 7397 7.598759 ACTATAACAACCCTACTAGTCATGG 57.401 40.000 0.00 0.73 0.00 3.66
2982 7398 3.629142 AACAACCCTACTAGTCATGGC 57.371 47.619 0.00 0.00 0.00 4.40
2983 7399 1.480954 ACAACCCTACTAGTCATGGCG 59.519 52.381 0.00 0.00 0.00 5.69
2984 7400 1.480954 CAACCCTACTAGTCATGGCGT 59.519 52.381 0.00 0.00 0.00 5.68
2985 7401 2.691526 CAACCCTACTAGTCATGGCGTA 59.308 50.000 0.00 0.00 0.00 4.42
2986 7402 2.584236 ACCCTACTAGTCATGGCGTAG 58.416 52.381 0.00 5.64 0.00 3.51
2987 7403 2.091994 ACCCTACTAGTCATGGCGTAGT 60.092 50.000 0.00 11.27 0.00 2.73
2988 7404 2.293677 CCCTACTAGTCATGGCGTAGTG 59.706 54.545 15.42 1.49 0.00 2.74
2989 7405 2.293677 CCTACTAGTCATGGCGTAGTGG 59.706 54.545 15.42 13.16 0.00 4.00
2990 7406 0.460311 ACTAGTCATGGCGTAGTGGC 59.540 55.000 8.15 0.00 45.12 5.01
2997 7413 2.345991 GGCGTAGTGGCAAGGACA 59.654 61.111 0.00 0.00 44.08 4.02
2998 7414 1.078426 GGCGTAGTGGCAAGGACAT 60.078 57.895 0.00 0.00 44.08 3.06
2999 7415 1.369091 GGCGTAGTGGCAAGGACATG 61.369 60.000 0.00 0.00 44.08 3.21
3000 7416 1.982073 GCGTAGTGGCAAGGACATGC 61.982 60.000 0.00 0.00 45.67 4.06
3001 7417 0.391661 CGTAGTGGCAAGGACATGCT 60.392 55.000 0.00 0.00 45.68 3.79
3002 7418 1.373570 GTAGTGGCAAGGACATGCTC 58.626 55.000 0.00 0.00 45.68 4.26
3003 7419 1.065854 GTAGTGGCAAGGACATGCTCT 60.066 52.381 0.00 2.28 45.68 4.09
3004 7420 0.035630 AGTGGCAAGGACATGCTCTC 60.036 55.000 0.00 0.00 45.68 3.20
3005 7421 0.035630 GTGGCAAGGACATGCTCTCT 60.036 55.000 0.00 0.00 45.68 3.10
3006 7422 0.035725 TGGCAAGGACATGCTCTCTG 60.036 55.000 0.00 0.00 45.68 3.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
80 3780 9.846248 AGTTTTCATGAAATAAAGGAGAATTCG 57.154 29.630 21.10 0.00 0.00 3.34
413 4118 2.315925 TGCTCAATGAAGACCCGATC 57.684 50.000 0.00 0.00 0.00 3.69
414 4119 2.787473 TTGCTCAATGAAGACCCGAT 57.213 45.000 0.00 0.00 0.00 4.18
415 4120 2.038426 TCTTTGCTCAATGAAGACCCGA 59.962 45.455 0.00 0.00 0.00 5.14
539 4244 6.483640 CACCTCTTTAATCACATAGCCTAACC 59.516 42.308 0.00 0.00 0.00 2.85
540 4245 7.048512 ACACCTCTTTAATCACATAGCCTAAC 58.951 38.462 0.00 0.00 0.00 2.34
705 5077 3.600388 CTTCATGTTCCACTACAGGGAC 58.400 50.000 0.00 0.00 37.70 4.46
722 5094 2.819608 GCAGATTACACCAAAGCCTTCA 59.180 45.455 0.00 0.00 0.00 3.02
809 5181 6.718454 CCTGCCCTTCATCATTACTTCAATAT 59.282 38.462 0.00 0.00 0.00 1.28
811 5183 4.891756 CCTGCCCTTCATCATTACTTCAAT 59.108 41.667 0.00 0.00 0.00 2.57
817 5189 1.986882 CCCCTGCCCTTCATCATTAC 58.013 55.000 0.00 0.00 0.00 1.89
818 5190 0.185901 GCCCCTGCCCTTCATCATTA 59.814 55.000 0.00 0.00 0.00 1.90
820 5192 2.605299 GCCCCTGCCCTTCATCAT 59.395 61.111 0.00 0.00 0.00 2.45
830 5202 4.891037 GATGAGCCAGGCCCCTGC 62.891 72.222 8.22 0.00 42.35 4.85
831 5203 2.764737 ATGATGAGCCAGGCCCCTG 61.765 63.158 8.22 7.36 43.26 4.45
832 5204 2.369291 ATGATGAGCCAGGCCCCT 60.369 61.111 8.22 0.00 0.00 4.79
833 5205 2.203451 CATGATGAGCCAGGCCCC 60.203 66.667 8.22 0.33 0.00 5.80
834 5206 2.077842 ATCCATGATGAGCCAGGCCC 62.078 60.000 8.22 0.00 0.00 5.80
835 5207 0.178970 AATCCATGATGAGCCAGGCC 60.179 55.000 8.22 0.00 0.00 5.19
836 5208 1.245732 GAATCCATGATGAGCCAGGC 58.754 55.000 1.84 1.84 0.00 4.85
837 5209 1.202734 ACGAATCCATGATGAGCCAGG 60.203 52.381 0.00 0.00 0.00 4.45
838 5210 1.871676 CACGAATCCATGATGAGCCAG 59.128 52.381 0.00 0.00 0.00 4.85
839 5211 1.475571 CCACGAATCCATGATGAGCCA 60.476 52.381 0.00 0.00 0.00 4.75
840 5212 1.233019 CCACGAATCCATGATGAGCC 58.767 55.000 0.00 0.00 0.00 4.70
841 5213 0.590195 GCCACGAATCCATGATGAGC 59.410 55.000 0.00 0.00 0.00 4.26
842 5214 1.871676 CAGCCACGAATCCATGATGAG 59.128 52.381 0.00 0.00 0.00 2.90
843 5215 1.475571 CCAGCCACGAATCCATGATGA 60.476 52.381 0.00 0.00 0.00 2.92
844 5216 0.949397 CCAGCCACGAATCCATGATG 59.051 55.000 0.00 0.00 0.00 3.07
845 5217 0.179009 CCCAGCCACGAATCCATGAT 60.179 55.000 0.00 0.00 0.00 2.45
846 5218 1.224315 CCCAGCCACGAATCCATGA 59.776 57.895 0.00 0.00 0.00 3.07
847 5219 2.484062 GCCCAGCCACGAATCCATG 61.484 63.158 0.00 0.00 0.00 3.66
848 5220 2.124151 GCCCAGCCACGAATCCAT 60.124 61.111 0.00 0.00 0.00 3.41
859 5231 1.324740 TTGCATTGATCTGGCCCAGC 61.325 55.000 5.66 0.00 0.00 4.85
860 5232 1.136305 CTTTGCATTGATCTGGCCCAG 59.864 52.381 3.69 3.69 0.00 4.45
861 5233 1.187974 CTTTGCATTGATCTGGCCCA 58.812 50.000 0.00 0.00 0.00 5.36
862 5234 1.477553 TCTTTGCATTGATCTGGCCC 58.522 50.000 0.00 0.00 0.00 5.80
863 5235 3.598019 TTTCTTTGCATTGATCTGGCC 57.402 42.857 0.00 0.00 0.00 5.36
864 5236 5.640357 TCAATTTTCTTTGCATTGATCTGGC 59.360 36.000 0.00 0.00 33.03 4.85
865 5237 6.872020 AGTCAATTTTCTTTGCATTGATCTGG 59.128 34.615 0.41 0.00 38.77 3.86
866 5238 7.884816 AGTCAATTTTCTTTGCATTGATCTG 57.115 32.000 0.41 0.00 38.77 2.90
867 5239 9.985730 TTAAGTCAATTTTCTTTGCATTGATCT 57.014 25.926 0.41 0.00 38.77 2.75
869 5241 9.545105 TGTTAAGTCAATTTTCTTTGCATTGAT 57.455 25.926 0.41 0.00 38.77 2.57
870 5242 8.939201 TGTTAAGTCAATTTTCTTTGCATTGA 57.061 26.923 0.00 0.00 35.10 2.57
871 5243 9.985318 TTTGTTAAGTCAATTTTCTTTGCATTG 57.015 25.926 0.00 0.00 0.00 2.82
874 5246 9.985318 CATTTTGTTAAGTCAATTTTCTTTGCA 57.015 25.926 0.00 0.00 0.00 4.08
904 5276 8.983724 GCTAGCTATTTCTCACTCGATTTTAAT 58.016 33.333 7.70 0.00 0.00 1.40
944 5319 9.684448 CGGATGCAGATCGAGTTATATAATAAT 57.316 33.333 0.00 0.00 0.00 1.28
945 5320 8.135529 CCGGATGCAGATCGAGTTATATAATAA 58.864 37.037 0.00 0.00 0.00 1.40
973 5348 2.087646 CTGGGGAAGCTGCTTCTTTAC 58.912 52.381 33.75 23.12 40.07 2.01
1348 5730 1.538666 GATATGGGGCTGTTGGGCT 59.461 57.895 0.00 0.00 40.65 5.19
1606 6010 4.701651 TCTGCAGATGTAACCCTGAAATTG 59.298 41.667 13.74 0.00 32.37 2.32
1620 6024 3.291809 TGCACAACAAATCTGCAGATG 57.708 42.857 29.34 21.41 36.00 2.90
1649 6054 9.712305 ATAGATCATACCAACTGCTAATTGTAC 57.288 33.333 0.00 0.00 0.00 2.90
1758 6163 1.879575 AGGAAGGGGTCGATGAATCA 58.120 50.000 0.00 0.00 0.00 2.57
1759 6164 2.170607 TGAAGGAAGGGGTCGATGAATC 59.829 50.000 0.00 0.00 0.00 2.52
1837 6242 5.869344 GCATAAGAAACCAAAAACAGATCCC 59.131 40.000 0.00 0.00 0.00 3.85
1979 6390 3.244044 GCAACTTTCTTTATTGTGGGGCA 60.244 43.478 0.00 0.00 0.00 5.36
2012 6423 2.550978 ACACGGTGACAACTTTGAGAG 58.449 47.619 16.29 0.00 0.00 3.20
2014 6425 3.119990 ACAAACACGGTGACAACTTTGAG 60.120 43.478 20.94 3.72 0.00 3.02
2051 6462 6.317642 TGGCAACTATGATACAAACATGGTAC 59.682 38.462 0.00 0.00 38.21 3.34
2116 6532 6.652062 CACCTTAAACGTTTCCACCTAGTAAT 59.348 38.462 18.42 0.00 0.00 1.89
2117 6533 5.990996 CACCTTAAACGTTTCCACCTAGTAA 59.009 40.000 18.42 1.83 0.00 2.24
2118 6534 5.304101 TCACCTTAAACGTTTCCACCTAGTA 59.696 40.000 18.42 0.00 0.00 1.82
2132 6548 6.157211 TCGACAGAGAAGAATCACCTTAAAC 58.843 40.000 0.00 0.00 0.00 2.01
2139 6555 7.008810 GTGTAGATTTCGACAGAGAAGAATCAC 59.991 40.741 5.33 3.07 32.29 3.06
2157 6573 9.579932 TGATACTAGATCATGTCTGTGTAGATT 57.420 33.333 0.00 0.00 37.83 2.40
2158 6574 9.579932 TTGATACTAGATCATGTCTGTGTAGAT 57.420 33.333 0.00 0.00 37.83 1.98
2159 6575 8.980481 TTGATACTAGATCATGTCTGTGTAGA 57.020 34.615 0.00 0.00 37.83 2.59
2162 6578 8.922237 AGATTTGATACTAGATCATGTCTGTGT 58.078 33.333 0.00 8.52 37.83 3.72
2163 6579 9.409312 GAGATTTGATACTAGATCATGTCTGTG 57.591 37.037 15.92 4.36 37.83 3.66
2164 6580 9.365906 AGAGATTTGATACTAGATCATGTCTGT 57.634 33.333 15.92 12.42 37.83 3.41
2165 6581 9.844790 GAGAGATTTGATACTAGATCATGTCTG 57.155 37.037 15.92 2.47 37.83 3.51
2166 6582 9.585369 TGAGAGATTTGATACTAGATCATGTCT 57.415 33.333 0.00 7.82 41.11 3.41
2169 6585 9.505995 CGATGAGAGATTTGATACTAGATCATG 57.494 37.037 0.00 0.00 0.00 3.07
2170 6586 9.460019 TCGATGAGAGATTTGATACTAGATCAT 57.540 33.333 0.00 0.00 0.00 2.45
2171 6587 8.854614 TCGATGAGAGATTTGATACTAGATCA 57.145 34.615 0.00 0.00 0.00 2.92
2183 6599 6.141847 AGGTTGTGCCTCGATGAGAGATTT 62.142 45.833 0.00 0.00 46.96 2.17
2184 6600 4.699180 AGGTTGTGCCTCGATGAGAGATT 61.699 47.826 0.00 0.00 46.96 2.40
2185 6601 3.216365 AGGTTGTGCCTCGATGAGAGAT 61.216 50.000 0.00 0.00 46.96 2.75
2186 6602 1.892769 AGGTTGTGCCTCGATGAGAGA 60.893 52.381 0.00 0.00 46.96 3.10
2187 6603 0.534412 AGGTTGTGCCTCGATGAGAG 59.466 55.000 0.00 0.00 46.96 3.20
2188 6604 0.247460 CAGGTTGTGCCTCGATGAGA 59.753 55.000 0.00 0.00 46.96 3.27
2189 6605 0.247460 TCAGGTTGTGCCTCGATGAG 59.753 55.000 0.00 0.00 46.96 2.90
2190 6606 0.037326 GTCAGGTTGTGCCTCGATGA 60.037 55.000 0.00 0.00 46.96 2.92
2191 6607 1.354337 CGTCAGGTTGTGCCTCGATG 61.354 60.000 0.00 0.00 46.96 3.84
2192 6608 1.079819 CGTCAGGTTGTGCCTCGAT 60.080 57.895 0.00 0.00 46.96 3.59
2193 6609 2.338620 CGTCAGGTTGTGCCTCGA 59.661 61.111 0.00 0.00 46.96 4.04
2194 6610 2.738521 CCGTCAGGTTGTGCCTCG 60.739 66.667 0.00 0.00 46.96 4.63
2204 6620 0.179134 GATCCGTCTTCACCGTCAGG 60.179 60.000 0.00 0.00 45.13 3.86
2205 6621 0.523546 CGATCCGTCTTCACCGTCAG 60.524 60.000 0.00 0.00 0.00 3.51
2206 6622 1.239296 ACGATCCGTCTTCACCGTCA 61.239 55.000 0.00 0.00 33.69 4.35
2207 6623 0.109412 AACGATCCGTCTTCACCGTC 60.109 55.000 0.00 0.00 39.99 4.79
2208 6624 1.167851 TAACGATCCGTCTTCACCGT 58.832 50.000 0.00 0.00 39.99 4.83
2209 6625 2.267188 TTAACGATCCGTCTTCACCG 57.733 50.000 0.00 0.00 39.99 4.94
2210 6626 2.787680 CGATTAACGATCCGTCTTCACC 59.212 50.000 0.00 0.00 45.77 4.02
2211 6627 2.787680 CCGATTAACGATCCGTCTTCAC 59.212 50.000 0.00 0.00 45.77 3.18
2212 6628 2.684374 TCCGATTAACGATCCGTCTTCA 59.316 45.455 0.00 0.00 45.77 3.02
2213 6629 3.344904 TCCGATTAACGATCCGTCTTC 57.655 47.619 0.00 0.00 45.77 2.87
2214 6630 4.320788 GGTATCCGATTAACGATCCGTCTT 60.321 45.833 0.00 0.00 45.77 3.01
2215 6631 3.190118 GGTATCCGATTAACGATCCGTCT 59.810 47.826 0.00 0.00 45.77 4.18
2216 6632 3.190118 AGGTATCCGATTAACGATCCGTC 59.810 47.826 0.00 0.00 45.77 4.79
2217 6633 3.057736 CAGGTATCCGATTAACGATCCGT 60.058 47.826 0.00 0.00 45.77 4.69
2218 6634 3.057736 ACAGGTATCCGATTAACGATCCG 60.058 47.826 0.00 0.00 45.77 4.18
2219 6635 4.516365 ACAGGTATCCGATTAACGATCC 57.484 45.455 0.00 0.00 45.77 3.36
2220 6636 5.981315 TGAAACAGGTATCCGATTAACGATC 59.019 40.000 0.00 0.00 45.77 3.69
2221 6637 5.909477 TGAAACAGGTATCCGATTAACGAT 58.091 37.500 0.00 0.00 45.77 3.73
2222 6638 5.125900 TCTGAAACAGGTATCCGATTAACGA 59.874 40.000 0.00 0.00 36.76 3.85
2223 6639 5.345702 TCTGAAACAGGTATCCGATTAACG 58.654 41.667 0.00 0.00 35.46 3.18
2224 6640 6.338937 ACTCTGAAACAGGTATCCGATTAAC 58.661 40.000 0.00 0.00 31.51 2.01
2225 6641 6.540438 ACTCTGAAACAGGTATCCGATTAA 57.460 37.500 0.00 0.00 31.51 1.40
2226 6642 6.540438 AACTCTGAAACAGGTATCCGATTA 57.460 37.500 0.00 0.00 31.51 1.75
2227 6643 5.422214 AACTCTGAAACAGGTATCCGATT 57.578 39.130 0.00 0.00 31.51 3.34
2228 6644 6.540438 TTAACTCTGAAACAGGTATCCGAT 57.460 37.500 0.00 0.00 31.51 4.18
2229 6645 5.988310 TTAACTCTGAAACAGGTATCCGA 57.012 39.130 0.00 0.00 31.51 4.55
2230 6646 6.425721 TGTTTTAACTCTGAAACAGGTATCCG 59.574 38.462 0.00 0.00 39.92 4.18
2231 6647 7.739498 TGTTTTAACTCTGAAACAGGTATCC 57.261 36.000 0.00 0.00 39.92 2.59
2233 6649 9.965824 CAAATGTTTTAACTCTGAAACAGGTAT 57.034 29.630 7.57 0.00 45.60 2.73
2234 6650 9.179909 TCAAATGTTTTAACTCTGAAACAGGTA 57.820 29.630 7.57 0.00 45.60 3.08
2235 6651 8.062065 TCAAATGTTTTAACTCTGAAACAGGT 57.938 30.769 7.57 0.00 45.60 4.00
2236 6652 8.925161 TTCAAATGTTTTAACTCTGAAACAGG 57.075 30.769 7.57 1.54 45.60 4.00
2256 6672 9.761504 TCATAAATGCTCTTCAACATTTTCAAA 57.238 25.926 6.31 0.00 42.34 2.69
2257 6673 9.932207 ATCATAAATGCTCTTCAACATTTTCAA 57.068 25.926 6.31 0.00 42.34 2.69
2258 6674 9.361315 CATCATAAATGCTCTTCAACATTTTCA 57.639 29.630 6.31 0.00 42.34 2.69
2259 6675 8.325997 GCATCATAAATGCTCTTCAACATTTTC 58.674 33.333 6.31 0.00 42.34 2.29
2260 6676 7.279313 GGCATCATAAATGCTCTTCAACATTTT 59.721 33.333 9.62 0.00 42.34 1.82
2261 6677 6.759827 GGCATCATAAATGCTCTTCAACATTT 59.240 34.615 9.62 6.26 45.73 2.32
2262 6678 6.278363 GGCATCATAAATGCTCTTCAACATT 58.722 36.000 9.62 0.00 44.02 2.71
2263 6679 5.506815 CGGCATCATAAATGCTCTTCAACAT 60.507 40.000 9.62 0.00 44.02 2.71
2264 6680 4.201940 CGGCATCATAAATGCTCTTCAACA 60.202 41.667 9.62 0.00 44.02 3.33
2265 6681 4.201950 ACGGCATCATAAATGCTCTTCAAC 60.202 41.667 9.62 0.00 44.02 3.18
2266 6682 3.947196 ACGGCATCATAAATGCTCTTCAA 59.053 39.130 9.62 0.00 44.02 2.69
2267 6683 3.544684 ACGGCATCATAAATGCTCTTCA 58.455 40.909 9.62 0.00 44.02 3.02
2268 6684 4.201950 ACAACGGCATCATAAATGCTCTTC 60.202 41.667 9.62 0.00 44.02 2.87
2269 6685 3.696051 ACAACGGCATCATAAATGCTCTT 59.304 39.130 9.62 0.00 44.02 2.85
2270 6686 3.282021 ACAACGGCATCATAAATGCTCT 58.718 40.909 9.62 0.00 44.02 4.09
2271 6687 3.065233 TGACAACGGCATCATAAATGCTC 59.935 43.478 9.62 0.67 44.02 4.26
2272 6688 3.016031 TGACAACGGCATCATAAATGCT 58.984 40.909 9.62 0.00 44.02 3.79
2273 6689 3.419264 TGACAACGGCATCATAAATGC 57.581 42.857 1.40 1.40 43.85 3.56
2274 6690 4.207635 GCAATGACAACGGCATCATAAATG 59.792 41.667 0.00 0.00 34.41 2.32
2275 6691 4.362279 GCAATGACAACGGCATCATAAAT 58.638 39.130 0.00 0.00 34.41 1.40
2276 6692 3.428725 GGCAATGACAACGGCATCATAAA 60.429 43.478 0.00 0.00 34.41 1.40
2277 6693 2.098934 GGCAATGACAACGGCATCATAA 59.901 45.455 0.00 0.00 34.41 1.90
2278 6694 1.675483 GGCAATGACAACGGCATCATA 59.325 47.619 0.00 0.00 34.41 2.15
2279 6695 0.457035 GGCAATGACAACGGCATCAT 59.543 50.000 0.00 0.00 37.14 2.45
2280 6696 0.608856 AGGCAATGACAACGGCATCA 60.609 50.000 0.00 0.00 0.00 3.07
2281 6697 0.527565 AAGGCAATGACAACGGCATC 59.472 50.000 0.00 0.00 0.00 3.91
2282 6698 0.968405 AAAGGCAATGACAACGGCAT 59.032 45.000 0.00 0.00 0.00 4.40
2283 6699 0.749649 AAAAGGCAATGACAACGGCA 59.250 45.000 0.00 0.00 0.00 5.69
2284 6700 1.864565 AAAAAGGCAATGACAACGGC 58.135 45.000 0.00 0.00 0.00 5.68
2285 6701 4.082245 AGGATAAAAAGGCAATGACAACGG 60.082 41.667 0.00 0.00 0.00 4.44
2286 6702 5.059404 AGGATAAAAAGGCAATGACAACG 57.941 39.130 0.00 0.00 0.00 4.10
2287 6703 5.410924 GGAGGATAAAAAGGCAATGACAAC 58.589 41.667 0.00 0.00 0.00 3.32
2288 6704 4.466015 GGGAGGATAAAAAGGCAATGACAA 59.534 41.667 0.00 0.00 0.00 3.18
2289 6705 4.023291 GGGAGGATAAAAAGGCAATGACA 58.977 43.478 0.00 0.00 0.00 3.58
2290 6706 4.023291 TGGGAGGATAAAAAGGCAATGAC 58.977 43.478 0.00 0.00 0.00 3.06
2291 6707 4.023291 GTGGGAGGATAAAAAGGCAATGA 58.977 43.478 0.00 0.00 0.00 2.57
2292 6708 3.181487 CGTGGGAGGATAAAAAGGCAATG 60.181 47.826 0.00 0.00 0.00 2.82
2293 6709 3.023832 CGTGGGAGGATAAAAAGGCAAT 58.976 45.455 0.00 0.00 0.00 3.56
2294 6710 2.442413 CGTGGGAGGATAAAAAGGCAA 58.558 47.619 0.00 0.00 0.00 4.52
2295 6711 1.953311 GCGTGGGAGGATAAAAAGGCA 60.953 52.381 0.00 0.00 0.00 4.75
2296 6712 0.738975 GCGTGGGAGGATAAAAAGGC 59.261 55.000 0.00 0.00 0.00 4.35
2297 6713 2.122783 TGCGTGGGAGGATAAAAAGG 57.877 50.000 0.00 0.00 0.00 3.11
2298 6714 3.066760 GGAATGCGTGGGAGGATAAAAAG 59.933 47.826 0.00 0.00 0.00 2.27
2299 6715 3.020984 GGAATGCGTGGGAGGATAAAAA 58.979 45.455 0.00 0.00 0.00 1.94
2300 6716 2.025793 TGGAATGCGTGGGAGGATAAAA 60.026 45.455 0.00 0.00 0.00 1.52
2301 6717 1.562008 TGGAATGCGTGGGAGGATAAA 59.438 47.619 0.00 0.00 0.00 1.40
2302 6718 1.208706 TGGAATGCGTGGGAGGATAA 58.791 50.000 0.00 0.00 0.00 1.75
2303 6719 1.072173 CATGGAATGCGTGGGAGGATA 59.928 52.381 0.00 0.00 37.62 2.59
2304 6720 0.179009 CATGGAATGCGTGGGAGGAT 60.179 55.000 0.00 0.00 37.62 3.24
2305 6721 1.224315 CATGGAATGCGTGGGAGGA 59.776 57.895 0.00 0.00 37.62 3.71
2306 6722 3.831883 CATGGAATGCGTGGGAGG 58.168 61.111 0.00 0.00 37.62 4.30
2315 6731 3.547413 CGTCTTACATGCAGCATGGAATG 60.547 47.826 33.75 24.69 42.83 2.67
2316 6732 2.615447 CGTCTTACATGCAGCATGGAAT 59.385 45.455 33.75 18.89 42.83 3.01
2317 6733 2.009051 CGTCTTACATGCAGCATGGAA 58.991 47.619 33.75 30.96 42.43 3.53
2318 6734 1.066215 ACGTCTTACATGCAGCATGGA 60.066 47.619 33.75 26.67 45.16 3.41
2319 6735 1.372582 ACGTCTTACATGCAGCATGG 58.627 50.000 33.75 19.34 45.16 3.66
2320 6736 2.416202 TCAACGTCTTACATGCAGCATG 59.584 45.455 30.34 30.34 46.18 4.06
2321 6737 2.674852 CTCAACGTCTTACATGCAGCAT 59.325 45.455 0.52 0.52 0.00 3.79
2322 6738 2.068519 CTCAACGTCTTACATGCAGCA 58.931 47.619 0.00 0.00 0.00 4.41
2323 6739 1.201965 GCTCAACGTCTTACATGCAGC 60.202 52.381 0.00 0.00 0.00 5.25
2324 6740 1.059692 CGCTCAACGTCTTACATGCAG 59.940 52.381 0.00 0.00 36.87 4.41
2325 6741 1.067693 CGCTCAACGTCTTACATGCA 58.932 50.000 0.00 0.00 36.87 3.96
2326 6742 0.370273 CCGCTCAACGTCTTACATGC 59.630 55.000 0.00 0.00 41.42 4.06
2327 6743 0.999406 CCCGCTCAACGTCTTACATG 59.001 55.000 0.00 0.00 41.42 3.21
2328 6744 0.108329 CCCCGCTCAACGTCTTACAT 60.108 55.000 0.00 0.00 41.42 2.29
2329 6745 1.290955 CCCCGCTCAACGTCTTACA 59.709 57.895 0.00 0.00 41.42 2.41
2330 6746 2.098831 GCCCCGCTCAACGTCTTAC 61.099 63.158 0.00 0.00 41.42 2.34
2331 6747 2.263540 GCCCCGCTCAACGTCTTA 59.736 61.111 0.00 0.00 41.42 2.10
2332 6748 3.626924 AGCCCCGCTCAACGTCTT 61.627 61.111 0.00 0.00 41.42 3.01
2348 6764 2.356382 CGAGTGTTCCCTAGCTAGTGAG 59.644 54.545 19.31 8.02 0.00 3.51
2349 6765 2.366533 CGAGTGTTCCCTAGCTAGTGA 58.633 52.381 19.31 11.01 0.00 3.41
2350 6766 1.202313 GCGAGTGTTCCCTAGCTAGTG 60.202 57.143 19.31 8.53 31.28 2.74
2351 6767 1.104630 GCGAGTGTTCCCTAGCTAGT 58.895 55.000 19.31 0.00 31.28 2.57
2352 6768 1.335496 GAGCGAGTGTTCCCTAGCTAG 59.665 57.143 14.20 14.20 42.47 3.42
2353 6769 1.390565 GAGCGAGTGTTCCCTAGCTA 58.609 55.000 0.00 0.00 42.47 3.32
2354 6770 1.324005 GGAGCGAGTGTTCCCTAGCT 61.324 60.000 0.00 0.00 44.65 3.32
2355 6771 1.142097 GGAGCGAGTGTTCCCTAGC 59.858 63.158 0.00 0.00 39.44 3.42
2360 6776 3.455327 GTTAATAGGGAGCGAGTGTTCC 58.545 50.000 0.00 0.00 44.25 3.62
2361 6777 3.114065 CGTTAATAGGGAGCGAGTGTTC 58.886 50.000 0.00 0.00 0.00 3.18
2362 6778 2.494870 ACGTTAATAGGGAGCGAGTGTT 59.505 45.455 0.00 0.00 0.00 3.32
2363 6779 2.097825 ACGTTAATAGGGAGCGAGTGT 58.902 47.619 0.00 0.00 0.00 3.55
2364 6780 2.865343 ACGTTAATAGGGAGCGAGTG 57.135 50.000 0.00 0.00 0.00 3.51
2365 6781 3.022406 AGAACGTTAATAGGGAGCGAGT 58.978 45.455 0.00 0.00 0.00 4.18
2366 6782 3.712091 AGAACGTTAATAGGGAGCGAG 57.288 47.619 0.00 0.00 0.00 5.03
2367 6783 3.698040 AGAAGAACGTTAATAGGGAGCGA 59.302 43.478 0.00 0.00 0.00 4.93
2368 6784 4.043037 AGAAGAACGTTAATAGGGAGCG 57.957 45.455 0.00 0.00 0.00 5.03
2369 6785 5.265350 AGAGAAGAACGTTAATAGGGAGC 57.735 43.478 0.00 0.00 0.00 4.70
2370 6786 7.548967 AGAAAGAGAAGAACGTTAATAGGGAG 58.451 38.462 0.00 0.00 0.00 4.30
2371 6787 7.177921 TGAGAAAGAGAAGAACGTTAATAGGGA 59.822 37.037 0.00 0.00 0.00 4.20
2372 6788 7.275999 GTGAGAAAGAGAAGAACGTTAATAGGG 59.724 40.741 0.00 0.00 0.00 3.53
2373 6789 8.030106 AGTGAGAAAGAGAAGAACGTTAATAGG 58.970 37.037 0.00 0.00 0.00 2.57
2374 6790 8.855279 CAGTGAGAAAGAGAAGAACGTTAATAG 58.145 37.037 0.00 0.00 0.00 1.73
2375 6791 8.358148 ACAGTGAGAAAGAGAAGAACGTTAATA 58.642 33.333 0.00 0.00 0.00 0.98
2376 6792 7.210873 ACAGTGAGAAAGAGAAGAACGTTAAT 58.789 34.615 0.00 0.00 0.00 1.40
2377 6793 6.570692 ACAGTGAGAAAGAGAAGAACGTTAA 58.429 36.000 0.00 0.00 0.00 2.01
2378 6794 6.145338 ACAGTGAGAAAGAGAAGAACGTTA 57.855 37.500 0.00 0.00 0.00 3.18
2379 6795 5.012328 ACAGTGAGAAAGAGAAGAACGTT 57.988 39.130 0.00 0.00 0.00 3.99
2380 6796 4.657436 ACAGTGAGAAAGAGAAGAACGT 57.343 40.909 0.00 0.00 0.00 3.99
2381 6797 7.644986 ATTTACAGTGAGAAAGAGAAGAACG 57.355 36.000 0.00 0.00 0.00 3.95
2860 7276 2.547218 CGGTATGAGTGTATTTCGGGGG 60.547 54.545 0.00 0.00 0.00 5.40
2861 7277 2.363038 TCGGTATGAGTGTATTTCGGGG 59.637 50.000 0.00 0.00 0.00 5.73
2862 7278 3.552273 CCTCGGTATGAGTGTATTTCGGG 60.552 52.174 0.00 0.00 43.64 5.14
2863 7279 3.317149 TCCTCGGTATGAGTGTATTTCGG 59.683 47.826 0.00 0.00 43.64 4.30
2864 7280 4.563337 TCCTCGGTATGAGTGTATTTCG 57.437 45.455 0.00 0.00 43.64 3.46
2865 7281 6.103997 TGTTTCCTCGGTATGAGTGTATTTC 58.896 40.000 0.00 0.00 43.64 2.17
2866 7282 6.045072 TGTTTCCTCGGTATGAGTGTATTT 57.955 37.500 0.00 0.00 43.64 1.40
2867 7283 5.670792 TGTTTCCTCGGTATGAGTGTATT 57.329 39.130 0.00 0.00 43.64 1.89
2868 7284 5.670792 TTGTTTCCTCGGTATGAGTGTAT 57.329 39.130 0.00 0.00 43.64 2.29
2869 7285 5.471556 TTTGTTTCCTCGGTATGAGTGTA 57.528 39.130 0.00 0.00 43.64 2.90
2870 7286 4.345859 TTTGTTTCCTCGGTATGAGTGT 57.654 40.909 0.00 0.00 43.64 3.55
2871 7287 5.411361 TGAATTTGTTTCCTCGGTATGAGTG 59.589 40.000 0.00 0.00 43.64 3.51
2872 7288 5.556915 TGAATTTGTTTCCTCGGTATGAGT 58.443 37.500 0.00 0.00 43.64 3.41
2873 7289 6.494893 TTGAATTTGTTTCCTCGGTATGAG 57.505 37.500 0.00 0.00 44.83 2.90
2874 7290 6.885952 TTTGAATTTGTTTCCTCGGTATGA 57.114 33.333 0.00 0.00 33.04 2.15
2875 7291 9.801873 AATATTTGAATTTGTTTCCTCGGTATG 57.198 29.630 0.00 0.00 33.04 2.39
2908 7324 6.569780 AGGTTAGCGTTTGAGTTCAATTTTT 58.430 32.000 0.00 0.00 35.55 1.94
2909 7325 6.144078 AGGTTAGCGTTTGAGTTCAATTTT 57.856 33.333 0.00 0.00 35.55 1.82
2910 7326 5.767816 AGGTTAGCGTTTGAGTTCAATTT 57.232 34.783 0.00 0.00 35.55 1.82
2911 7327 5.531287 AGAAGGTTAGCGTTTGAGTTCAATT 59.469 36.000 0.00 0.00 35.55 2.32
2912 7328 5.063880 AGAAGGTTAGCGTTTGAGTTCAAT 58.936 37.500 0.00 0.00 35.55 2.57
2913 7329 4.448210 AGAAGGTTAGCGTTTGAGTTCAA 58.552 39.130 0.00 0.00 0.00 2.69
2914 7330 4.067972 AGAAGGTTAGCGTTTGAGTTCA 57.932 40.909 0.00 0.00 0.00 3.18
2915 7331 5.228665 ACTAGAAGGTTAGCGTTTGAGTTC 58.771 41.667 0.00 0.00 0.00 3.01
2916 7332 5.211174 ACTAGAAGGTTAGCGTTTGAGTT 57.789 39.130 0.00 0.00 0.00 3.01
2917 7333 4.868314 ACTAGAAGGTTAGCGTTTGAGT 57.132 40.909 0.00 0.00 0.00 3.41
2918 7334 7.647907 TTTAACTAGAAGGTTAGCGTTTGAG 57.352 36.000 0.00 0.00 33.90 3.02
2919 7335 9.880157 ATATTTAACTAGAAGGTTAGCGTTTGA 57.120 29.630 0.00 0.00 33.90 2.69
2923 7339 9.924650 CCATATATTTAACTAGAAGGTTAGCGT 57.075 33.333 0.00 0.00 33.90 5.07
2924 7340 8.870879 GCCATATATTTAACTAGAAGGTTAGCG 58.129 37.037 0.00 0.00 33.90 4.26
2925 7341 9.720769 TGCCATATATTTAACTAGAAGGTTAGC 57.279 33.333 0.00 0.00 33.90 3.09
2943 7359 8.978472 GGGTTGTTATAGTAGAGATGCCATATA 58.022 37.037 0.00 0.00 0.00 0.86
2944 7360 7.680310 AGGGTTGTTATAGTAGAGATGCCATAT 59.320 37.037 0.00 0.00 0.00 1.78
2945 7361 7.016914 AGGGTTGTTATAGTAGAGATGCCATA 58.983 38.462 0.00 0.00 0.00 2.74
2946 7362 5.846714 AGGGTTGTTATAGTAGAGATGCCAT 59.153 40.000 0.00 0.00 0.00 4.40
2947 7363 5.216622 AGGGTTGTTATAGTAGAGATGCCA 58.783 41.667 0.00 0.00 0.00 4.92
2948 7364 5.810080 AGGGTTGTTATAGTAGAGATGCC 57.190 43.478 0.00 0.00 0.00 4.40
2949 7365 7.527568 AGTAGGGTTGTTATAGTAGAGATGC 57.472 40.000 0.00 0.00 0.00 3.91
2950 7366 9.796180 ACTAGTAGGGTTGTTATAGTAGAGATG 57.204 37.037 1.45 0.00 0.00 2.90
2952 7368 8.996655 TGACTAGTAGGGTTGTTATAGTAGAGA 58.003 37.037 0.00 0.00 0.00 3.10
2953 7369 9.796180 ATGACTAGTAGGGTTGTTATAGTAGAG 57.204 37.037 0.00 0.00 0.00 2.43
2954 7370 9.570468 CATGACTAGTAGGGTTGTTATAGTAGA 57.430 37.037 0.00 0.00 0.00 2.59
2955 7371 8.794553 CCATGACTAGTAGGGTTGTTATAGTAG 58.205 40.741 0.00 0.00 0.00 2.57
2956 7372 7.232127 GCCATGACTAGTAGGGTTGTTATAGTA 59.768 40.741 0.00 0.00 0.00 1.82
2957 7373 6.041751 GCCATGACTAGTAGGGTTGTTATAGT 59.958 42.308 0.00 0.00 0.00 2.12
2958 7374 6.456501 GCCATGACTAGTAGGGTTGTTATAG 58.543 44.000 0.00 0.00 0.00 1.31
2959 7375 5.010314 CGCCATGACTAGTAGGGTTGTTATA 59.990 44.000 0.00 0.00 0.00 0.98
2960 7376 4.202223 CGCCATGACTAGTAGGGTTGTTAT 60.202 45.833 0.00 0.00 0.00 1.89
2961 7377 3.131577 CGCCATGACTAGTAGGGTTGTTA 59.868 47.826 0.00 0.00 0.00 2.41
2962 7378 2.093658 CGCCATGACTAGTAGGGTTGTT 60.094 50.000 0.00 0.00 0.00 2.83
2963 7379 1.480954 CGCCATGACTAGTAGGGTTGT 59.519 52.381 0.00 0.00 0.00 3.32
2964 7380 1.480954 ACGCCATGACTAGTAGGGTTG 59.519 52.381 0.00 0.00 0.00 3.77
2965 7381 1.861982 ACGCCATGACTAGTAGGGTT 58.138 50.000 0.00 0.00 0.00 4.11
2966 7382 2.091994 ACTACGCCATGACTAGTAGGGT 60.092 50.000 15.76 2.67 40.43 4.34
2967 7383 2.293677 CACTACGCCATGACTAGTAGGG 59.706 54.545 15.76 0.00 40.43 3.53
2968 7384 2.293677 CCACTACGCCATGACTAGTAGG 59.706 54.545 15.76 0.00 40.43 3.18
2969 7385 2.287668 GCCACTACGCCATGACTAGTAG 60.288 54.545 0.00 4.94 41.49 2.57
2970 7386 1.679680 GCCACTACGCCATGACTAGTA 59.320 52.381 0.00 0.00 0.00 1.82
2971 7387 0.460311 GCCACTACGCCATGACTAGT 59.540 55.000 0.00 0.00 0.00 2.57
2972 7388 0.459899 TGCCACTACGCCATGACTAG 59.540 55.000 0.00 0.00 0.00 2.57
2973 7389 0.899019 TTGCCACTACGCCATGACTA 59.101 50.000 0.00 0.00 0.00 2.59
2974 7390 0.391661 CTTGCCACTACGCCATGACT 60.392 55.000 0.00 0.00 0.00 3.41
2975 7391 1.369091 CCTTGCCACTACGCCATGAC 61.369 60.000 0.00 0.00 0.00 3.06
2976 7392 1.078497 CCTTGCCACTACGCCATGA 60.078 57.895 0.00 0.00 0.00 3.07
2977 7393 1.078497 TCCTTGCCACTACGCCATG 60.078 57.895 0.00 0.00 0.00 3.66
2978 7394 1.078426 GTCCTTGCCACTACGCCAT 60.078 57.895 0.00 0.00 0.00 4.40
2979 7395 1.836999 ATGTCCTTGCCACTACGCCA 61.837 55.000 0.00 0.00 0.00 5.69
2980 7396 1.078426 ATGTCCTTGCCACTACGCC 60.078 57.895 0.00 0.00 0.00 5.68
2981 7397 1.982073 GCATGTCCTTGCCACTACGC 61.982 60.000 0.00 0.00 36.60 4.42
2982 7398 0.391661 AGCATGTCCTTGCCACTACG 60.392 55.000 0.00 0.00 43.83 3.51
2983 7399 1.065854 AGAGCATGTCCTTGCCACTAC 60.066 52.381 0.00 0.00 43.83 2.73
2984 7400 1.208052 GAGAGCATGTCCTTGCCACTA 59.792 52.381 0.00 0.00 43.83 2.74
2985 7401 0.035630 GAGAGCATGTCCTTGCCACT 60.036 55.000 0.00 2.81 43.83 4.00
2986 7402 0.035630 AGAGAGCATGTCCTTGCCAC 60.036 55.000 0.00 0.00 43.83 5.01
2987 7403 0.035725 CAGAGAGCATGTCCTTGCCA 60.036 55.000 0.00 0.00 43.83 4.92
2988 7404 2.777969 CAGAGAGCATGTCCTTGCC 58.222 57.895 0.00 0.00 43.83 4.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.