Multiple sequence alignment - TraesCS4A01G316600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G316600 chr4A 100.000 3560 0 0 1 3560 606410251 606413810 0.000000e+00 6575
1 TraesCS4A01G316600 chr4A 95.413 109 4 1 766 873 589502833 589502941 4.730000e-39 172
2 TraesCS4A01G316600 chr5D 91.097 2707 141 34 871 3519 564976061 564978725 0.000000e+00 3572
3 TraesCS4A01G316600 chr5D 87.313 268 15 5 398 665 564974816 564975064 4.500000e-74 289
4 TraesCS4A01G316600 chr5D 90.977 133 9 1 636 768 564975934 564976063 3.650000e-40 176
5 TraesCS4A01G316600 chr5B 91.306 2059 121 23 871 2881 708338252 708336204 0.000000e+00 2758
6 TraesCS4A01G316600 chr5B 93.878 392 20 2 1 390 371495503 371495892 3.960000e-164 588
7 TraesCS4A01G316600 chr5B 83.208 530 70 12 3002 3519 708335330 708334808 5.380000e-128 468
8 TraesCS4A01G316600 chr5B 82.500 200 20 6 470 665 708339253 708339065 1.020000e-35 161
9 TraesCS4A01G316600 chr5B 87.023 131 13 3 639 768 708338377 708338250 1.030000e-30 145
10 TraesCS4A01G316600 chr6B 94.643 392 15 4 1 389 560706834 560706446 1.410000e-168 603
11 TraesCS4A01G316600 chr2D 94.148 393 19 3 1 390 312630602 312630993 2.370000e-166 595
12 TraesCS4A01G316600 chr2D 93.639 393 19 6 1 390 288327208 288327597 1.840000e-162 582
13 TraesCS4A01G316600 chr2D 93.017 401 22 5 1 401 236413574 236413968 6.620000e-162 580
14 TraesCS4A01G316600 chr1D 93.924 395 17 5 1 390 318382051 318382443 1.100000e-164 590
15 TraesCS4A01G316600 chr2A 93.893 393 19 3 1 390 349365828 349366218 3.960000e-164 588
16 TraesCS4A01G316600 chr2A 94.545 110 5 1 766 874 79714337 79714446 6.110000e-38 169
17 TraesCS4A01G316600 chr3D 93.878 392 19 3 1 390 251239944 251240332 1.420000e-163 586
18 TraesCS4A01G316600 chr6D 92.804 403 19 8 1 401 164133368 164133762 3.080000e-160 575
19 TraesCS4A01G316600 chr6A 95.614 114 3 2 763 874 321275470 321275357 7.850000e-42 182
20 TraesCS4A01G316600 chr6A 96.330 109 3 1 766 873 540825243 540825135 1.020000e-40 178
21 TraesCS4A01G316600 chr6A 96.330 109 3 1 766 873 594981236 594981128 1.020000e-40 178
22 TraesCS4A01G316600 chr4B 96.296 108 3 1 767 873 139519612 139519505 3.650000e-40 176
23 TraesCS4A01G316600 chr5A 95.413 109 4 1 766 873 596485084 596484976 4.730000e-39 172
24 TraesCS4A01G316600 chr5A 95.370 108 4 1 767 873 575329549 575329656 1.700000e-38 171
25 TraesCS4A01G316600 chr3A 93.220 118 5 3 759 873 191251855 191251972 1.700000e-38 171


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G316600 chr4A 606410251 606413810 3559 False 6575.000000 6575 100.000000 1 3560 1 chr4A.!!$F2 3559
1 TraesCS4A01G316600 chr5D 564974816 564978725 3909 False 1345.666667 3572 89.795667 398 3519 3 chr5D.!!$F1 3121
2 TraesCS4A01G316600 chr5B 708334808 708339253 4445 True 883.000000 2758 86.009250 470 3519 4 chr5B.!!$R1 3049

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
330 331 0.035317 GCCATCTATGCACCATCGGA 59.965 55.0 0.0 0.0 0.0 4.55 F
935 1898 0.036732 TTGCATCACTTCTTCGGCCT 59.963 50.0 0.0 0.0 0.0 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1278 2276 2.203070 CATAGGCCCGTGAGCACC 60.203 66.667 0.00 0.0 0.0 5.01 R
2662 3672 0.542702 ACCTCCCTTGTGGCAATTGG 60.543 55.000 7.72 0.0 0.0 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
99 100 9.904647 CTATTTTAAAATCCATGAAATTGTGCG 57.095 29.630 16.56 0.00 0.00 5.34
100 101 7.721286 TTTTAAAATCCATGAAATTGTGCGT 57.279 28.000 0.00 0.00 0.00 5.24
101 102 7.721286 TTTAAAATCCATGAAATTGTGCGTT 57.279 28.000 0.00 0.00 0.00 4.84
102 103 5.594724 AAAATCCATGAAATTGTGCGTTG 57.405 34.783 0.00 0.00 0.00 4.10
103 104 3.940209 ATCCATGAAATTGTGCGTTGT 57.060 38.095 0.00 0.00 0.00 3.32
104 105 5.384063 AATCCATGAAATTGTGCGTTGTA 57.616 34.783 0.00 0.00 0.00 2.41
105 106 4.837896 TCCATGAAATTGTGCGTTGTAA 57.162 36.364 0.00 0.00 0.00 2.41
106 107 4.793071 TCCATGAAATTGTGCGTTGTAAG 58.207 39.130 0.00 0.00 0.00 2.34
107 108 3.919804 CCATGAAATTGTGCGTTGTAAGG 59.080 43.478 0.00 0.00 0.00 2.69
108 109 3.006659 TGAAATTGTGCGTTGTAAGGC 57.993 42.857 2.58 2.58 40.04 4.35
109 110 2.359214 TGAAATTGTGCGTTGTAAGGCA 59.641 40.909 7.80 7.80 46.24 4.75
118 119 5.943706 TGCGTTGTAAGGCATAAAGTAAA 57.056 34.783 7.80 0.00 43.92 2.01
119 120 6.315091 TGCGTTGTAAGGCATAAAGTAAAA 57.685 33.333 7.80 0.00 43.92 1.52
120 121 6.736123 TGCGTTGTAAGGCATAAAGTAAAAA 58.264 32.000 7.80 0.00 43.92 1.94
121 122 6.637658 TGCGTTGTAAGGCATAAAGTAAAAAC 59.362 34.615 7.80 0.00 43.92 2.43
122 123 6.637658 GCGTTGTAAGGCATAAAGTAAAAACA 59.362 34.615 4.58 0.00 39.45 2.83
123 124 7.167801 GCGTTGTAAGGCATAAAGTAAAAACAA 59.832 33.333 4.58 0.00 39.45 2.83
124 125 9.021863 CGTTGTAAGGCATAAAGTAAAAACAAA 57.978 29.630 0.00 0.00 0.00 2.83
131 132 9.161629 AGGCATAAAGTAAAAACAAATAATGGC 57.838 29.630 0.00 0.00 0.00 4.40
132 133 8.940952 GGCATAAAGTAAAAACAAATAATGGCA 58.059 29.630 0.00 0.00 0.00 4.92
169 170 9.617523 AAAAATTGGGCAATTAAGATATGGAAG 57.382 29.630 0.00 0.00 39.88 3.46
170 171 8.551682 AAATTGGGCAATTAAGATATGGAAGA 57.448 30.769 0.00 0.00 39.88 2.87
171 172 8.731591 AATTGGGCAATTAAGATATGGAAGAT 57.268 30.769 0.00 0.00 39.08 2.40
172 173 8.731591 ATTGGGCAATTAAGATATGGAAGATT 57.268 30.769 0.00 0.00 0.00 2.40
173 174 7.765695 TGGGCAATTAAGATATGGAAGATTC 57.234 36.000 0.00 0.00 0.00 2.52
174 175 7.529555 TGGGCAATTAAGATATGGAAGATTCT 58.470 34.615 0.00 0.00 0.00 2.40
175 176 8.668653 TGGGCAATTAAGATATGGAAGATTCTA 58.331 33.333 0.00 0.00 0.00 2.10
176 177 9.171877 GGGCAATTAAGATATGGAAGATTCTAG 57.828 37.037 0.00 0.00 0.00 2.43
177 178 9.950496 GGCAATTAAGATATGGAAGATTCTAGA 57.050 33.333 0.00 0.00 0.00 2.43
184 185 9.844257 AAGATATGGAAGATTCTAGAACAAAGG 57.156 33.333 7.48 0.00 0.00 3.11
185 186 9.218525 AGATATGGAAGATTCTAGAACAAAGGA 57.781 33.333 7.48 0.00 0.00 3.36
186 187 9.487790 GATATGGAAGATTCTAGAACAAAGGAG 57.512 37.037 7.48 0.00 0.00 3.69
187 188 6.935240 TGGAAGATTCTAGAACAAAGGAGA 57.065 37.500 7.48 0.00 0.00 3.71
188 189 7.316393 TGGAAGATTCTAGAACAAAGGAGAA 57.684 36.000 7.48 0.00 32.73 2.87
189 190 7.390027 TGGAAGATTCTAGAACAAAGGAGAAG 58.610 38.462 7.48 0.00 31.76 2.85
190 191 7.016661 TGGAAGATTCTAGAACAAAGGAGAAGT 59.983 37.037 7.48 0.00 31.76 3.01
191 192 7.333174 GGAAGATTCTAGAACAAAGGAGAAGTG 59.667 40.741 7.48 0.00 31.76 3.16
192 193 6.169800 AGATTCTAGAACAAAGGAGAAGTGC 58.830 40.000 7.48 0.00 31.76 4.40
193 194 5.552870 TTCTAGAACAAAGGAGAAGTGCT 57.447 39.130 0.00 0.00 0.00 4.40
194 195 5.552870 TCTAGAACAAAGGAGAAGTGCTT 57.447 39.130 0.00 0.00 35.50 3.91
195 196 5.300752 TCTAGAACAAAGGAGAAGTGCTTG 58.699 41.667 0.00 0.00 33.98 4.01
196 197 3.891049 AGAACAAAGGAGAAGTGCTTGT 58.109 40.909 0.00 0.00 33.98 3.16
197 198 3.629398 AGAACAAAGGAGAAGTGCTTGTG 59.371 43.478 0.00 0.00 33.98 3.33
198 199 3.004752 ACAAAGGAGAAGTGCTTGTGT 57.995 42.857 0.00 0.00 33.98 3.72
199 200 3.356290 ACAAAGGAGAAGTGCTTGTGTT 58.644 40.909 0.00 0.00 33.98 3.32
200 201 3.763897 ACAAAGGAGAAGTGCTTGTGTTT 59.236 39.130 0.00 0.00 33.98 2.83
201 202 4.220602 ACAAAGGAGAAGTGCTTGTGTTTT 59.779 37.500 0.00 0.00 33.98 2.43
202 203 4.376340 AAGGAGAAGTGCTTGTGTTTTG 57.624 40.909 0.00 0.00 32.14 2.44
203 204 3.620488 AGGAGAAGTGCTTGTGTTTTGA 58.380 40.909 0.00 0.00 0.00 2.69
204 205 3.629398 AGGAGAAGTGCTTGTGTTTTGAG 59.371 43.478 0.00 0.00 0.00 3.02
205 206 3.243201 GGAGAAGTGCTTGTGTTTTGAGG 60.243 47.826 0.00 0.00 0.00 3.86
206 207 3.356290 AGAAGTGCTTGTGTTTTGAGGT 58.644 40.909 0.00 0.00 0.00 3.85
207 208 3.763897 AGAAGTGCTTGTGTTTTGAGGTT 59.236 39.130 0.00 0.00 0.00 3.50
208 209 4.220602 AGAAGTGCTTGTGTTTTGAGGTTT 59.779 37.500 0.00 0.00 0.00 3.27
209 210 3.848726 AGTGCTTGTGTTTTGAGGTTTG 58.151 40.909 0.00 0.00 0.00 2.93
210 211 3.258123 AGTGCTTGTGTTTTGAGGTTTGT 59.742 39.130 0.00 0.00 0.00 2.83
211 212 3.367630 GTGCTTGTGTTTTGAGGTTTGTG 59.632 43.478 0.00 0.00 0.00 3.33
212 213 2.348362 GCTTGTGTTTTGAGGTTTGTGC 59.652 45.455 0.00 0.00 0.00 4.57
213 214 3.583806 CTTGTGTTTTGAGGTTTGTGCA 58.416 40.909 0.00 0.00 0.00 4.57
214 215 3.883830 TGTGTTTTGAGGTTTGTGCAT 57.116 38.095 0.00 0.00 0.00 3.96
215 216 4.199432 TGTGTTTTGAGGTTTGTGCATT 57.801 36.364 0.00 0.00 0.00 3.56
216 217 5.330455 TGTGTTTTGAGGTTTGTGCATTA 57.670 34.783 0.00 0.00 0.00 1.90
217 218 5.911752 TGTGTTTTGAGGTTTGTGCATTAT 58.088 33.333 0.00 0.00 0.00 1.28
218 219 5.752472 TGTGTTTTGAGGTTTGTGCATTATG 59.248 36.000 0.00 0.00 0.00 1.90
219 220 4.749099 TGTTTTGAGGTTTGTGCATTATGC 59.251 37.500 10.65 10.65 45.29 3.14
220 221 4.870123 TTTGAGGTTTGTGCATTATGCT 57.130 36.364 18.44 0.00 45.31 3.79
221 222 4.870123 TTGAGGTTTGTGCATTATGCTT 57.130 36.364 18.44 0.00 45.31 3.91
222 223 5.973899 TTGAGGTTTGTGCATTATGCTTA 57.026 34.783 18.44 4.39 45.31 3.09
223 224 5.973899 TGAGGTTTGTGCATTATGCTTAA 57.026 34.783 18.44 10.17 45.31 1.85
224 225 5.953183 TGAGGTTTGTGCATTATGCTTAAG 58.047 37.500 18.44 0.00 45.31 1.85
225 226 5.476599 TGAGGTTTGTGCATTATGCTTAAGT 59.523 36.000 18.44 2.94 45.31 2.24
226 227 6.015519 TGAGGTTTGTGCATTATGCTTAAGTT 60.016 34.615 18.44 0.00 45.31 2.66
227 228 6.389906 AGGTTTGTGCATTATGCTTAAGTTC 58.610 36.000 18.44 3.31 45.31 3.01
228 229 6.015519 AGGTTTGTGCATTATGCTTAAGTTCA 60.016 34.615 18.44 3.91 45.31 3.18
229 230 6.644592 GGTTTGTGCATTATGCTTAAGTTCAA 59.355 34.615 18.44 8.92 45.31 2.69
230 231 7.359181 GGTTTGTGCATTATGCTTAAGTTCAAC 60.359 37.037 18.44 5.27 45.31 3.18
231 232 5.708948 TGTGCATTATGCTTAAGTTCAACC 58.291 37.500 18.44 0.00 45.31 3.77
232 233 5.242615 TGTGCATTATGCTTAAGTTCAACCA 59.757 36.000 18.44 0.00 45.31 3.67
233 234 6.071447 TGTGCATTATGCTTAAGTTCAACCAT 60.071 34.615 18.44 0.63 45.31 3.55
234 235 6.254157 GTGCATTATGCTTAAGTTCAACCATG 59.746 38.462 18.44 0.00 45.31 3.66
235 236 5.750067 GCATTATGCTTAAGTTCAACCATGG 59.250 40.000 11.19 11.19 40.96 3.66
236 237 6.405731 GCATTATGCTTAAGTTCAACCATGGA 60.406 38.462 21.47 0.00 40.96 3.41
237 238 6.757897 TTATGCTTAAGTTCAACCATGGAG 57.242 37.500 21.47 10.83 0.00 3.86
238 239 4.098914 TGCTTAAGTTCAACCATGGAGT 57.901 40.909 21.47 2.21 0.00 3.85
239 240 4.072131 TGCTTAAGTTCAACCATGGAGTC 58.928 43.478 21.47 8.42 0.00 3.36
240 241 4.202461 TGCTTAAGTTCAACCATGGAGTCT 60.202 41.667 21.47 10.37 0.00 3.24
241 242 4.762251 GCTTAAGTTCAACCATGGAGTCTT 59.238 41.667 21.47 18.42 0.00 3.01
242 243 5.106515 GCTTAAGTTCAACCATGGAGTCTTC 60.107 44.000 21.47 4.19 0.00 2.87
243 244 4.713792 AAGTTCAACCATGGAGTCTTCT 57.286 40.909 21.47 6.52 0.00 2.85
244 245 5.825593 AAGTTCAACCATGGAGTCTTCTA 57.174 39.130 21.47 0.00 0.00 2.10
245 246 5.413309 AGTTCAACCATGGAGTCTTCTAG 57.587 43.478 21.47 0.00 0.00 2.43
246 247 5.087323 AGTTCAACCATGGAGTCTTCTAGA 58.913 41.667 21.47 0.00 0.00 2.43
247 248 5.723887 AGTTCAACCATGGAGTCTTCTAGAT 59.276 40.000 21.47 0.00 0.00 1.98
248 249 6.214412 AGTTCAACCATGGAGTCTTCTAGATT 59.786 38.462 21.47 0.00 0.00 2.40
249 250 5.982356 TCAACCATGGAGTCTTCTAGATTG 58.018 41.667 21.47 7.85 0.00 2.67
250 251 5.485353 TCAACCATGGAGTCTTCTAGATTGT 59.515 40.000 21.47 0.00 0.00 2.71
251 252 6.667848 TCAACCATGGAGTCTTCTAGATTGTA 59.332 38.462 21.47 0.00 0.00 2.41
252 253 6.472686 ACCATGGAGTCTTCTAGATTGTAC 57.527 41.667 21.47 0.00 0.00 2.90
253 254 5.958380 ACCATGGAGTCTTCTAGATTGTACA 59.042 40.000 21.47 0.00 0.00 2.90
254 255 6.613271 ACCATGGAGTCTTCTAGATTGTACAT 59.387 38.462 21.47 0.00 0.00 2.29
255 256 6.927936 CCATGGAGTCTTCTAGATTGTACATG 59.072 42.308 5.56 12.88 0.00 3.21
256 257 7.418368 CCATGGAGTCTTCTAGATTGTACATGT 60.418 40.741 5.56 2.69 31.51 3.21
257 258 6.867550 TGGAGTCTTCTAGATTGTACATGTG 58.132 40.000 9.11 0.00 0.00 3.21
258 259 6.127338 TGGAGTCTTCTAGATTGTACATGTGG 60.127 42.308 9.11 0.00 0.00 4.17
259 260 5.665459 AGTCTTCTAGATTGTACATGTGGC 58.335 41.667 9.11 1.72 0.00 5.01
260 261 5.187772 AGTCTTCTAGATTGTACATGTGGCA 59.812 40.000 9.11 4.65 0.00 4.92
261 262 5.874810 GTCTTCTAGATTGTACATGTGGCAA 59.125 40.000 9.11 13.71 0.00 4.52
262 263 6.371548 GTCTTCTAGATTGTACATGTGGCAAA 59.628 38.462 17.48 4.77 0.00 3.68
263 264 6.939730 TCTTCTAGATTGTACATGTGGCAAAA 59.060 34.615 17.48 9.08 0.00 2.44
264 265 7.611467 TCTTCTAGATTGTACATGTGGCAAAAT 59.389 33.333 17.48 12.76 0.00 1.82
265 266 7.320443 TCTAGATTGTACATGTGGCAAAATC 57.680 36.000 17.48 10.56 0.00 2.17
266 267 7.112122 TCTAGATTGTACATGTGGCAAAATCT 58.888 34.615 17.48 15.84 36.92 2.40
267 268 5.957798 AGATTGTACATGTGGCAAAATCTG 58.042 37.500 17.48 0.00 33.00 2.90
268 269 5.711506 AGATTGTACATGTGGCAAAATCTGA 59.288 36.000 17.48 0.00 33.00 3.27
269 270 5.981088 TTGTACATGTGGCAAAATCTGAT 57.019 34.783 9.11 0.00 0.00 2.90
270 271 5.313520 TGTACATGTGGCAAAATCTGATG 57.686 39.130 9.11 0.00 0.00 3.07
271 272 3.880047 ACATGTGGCAAAATCTGATGG 57.120 42.857 0.00 0.00 0.00 3.51
272 273 3.433343 ACATGTGGCAAAATCTGATGGA 58.567 40.909 0.00 0.00 0.00 3.41
273 274 3.833650 ACATGTGGCAAAATCTGATGGAA 59.166 39.130 0.00 0.00 0.00 3.53
274 275 4.468510 ACATGTGGCAAAATCTGATGGAAT 59.531 37.500 0.00 0.00 0.00 3.01
275 276 4.459390 TGTGGCAAAATCTGATGGAATG 57.541 40.909 0.00 0.00 0.00 2.67
276 277 3.833650 TGTGGCAAAATCTGATGGAATGT 59.166 39.130 0.00 0.00 0.00 2.71
277 278 5.015515 TGTGGCAAAATCTGATGGAATGTA 58.984 37.500 0.00 0.00 0.00 2.29
278 279 5.125900 TGTGGCAAAATCTGATGGAATGTAG 59.874 40.000 0.00 0.00 0.00 2.74
279 280 5.357878 GTGGCAAAATCTGATGGAATGTAGA 59.642 40.000 0.00 0.00 0.00 2.59
280 281 6.040166 GTGGCAAAATCTGATGGAATGTAGAT 59.960 38.462 0.00 0.00 30.65 1.98
281 282 6.040054 TGGCAAAATCTGATGGAATGTAGATG 59.960 38.462 0.00 0.00 30.10 2.90
282 283 6.263842 GGCAAAATCTGATGGAATGTAGATGA 59.736 38.462 0.00 0.00 30.10 2.92
283 284 7.039923 GGCAAAATCTGATGGAATGTAGATGAT 60.040 37.037 0.00 0.00 30.10 2.45
284 285 9.006839 GCAAAATCTGATGGAATGTAGATGATA 57.993 33.333 0.00 0.00 30.10 2.15
287 288 9.902684 AAATCTGATGGAATGTAGATGATATCC 57.097 33.333 0.00 0.00 30.10 2.59
288 289 8.619683 ATCTGATGGAATGTAGATGATATCCA 57.380 34.615 0.00 0.00 28.93 3.41
289 290 8.439964 TCTGATGGAATGTAGATGATATCCAA 57.560 34.615 0.00 0.00 0.00 3.53
290 291 8.316946 TCTGATGGAATGTAGATGATATCCAAC 58.683 37.037 0.00 0.00 0.00 3.77
291 292 7.099120 TGATGGAATGTAGATGATATCCAACG 58.901 38.462 0.00 0.00 0.00 4.10
292 293 5.793817 TGGAATGTAGATGATATCCAACGG 58.206 41.667 0.00 0.00 0.00 4.44
293 294 4.631813 GGAATGTAGATGATATCCAACGGC 59.368 45.833 0.00 0.00 0.00 5.68
294 295 3.678056 TGTAGATGATATCCAACGGCC 57.322 47.619 0.00 0.00 0.00 6.13
295 296 2.969262 TGTAGATGATATCCAACGGCCA 59.031 45.455 2.24 0.00 0.00 5.36
296 297 2.847327 AGATGATATCCAACGGCCAG 57.153 50.000 2.24 0.00 0.00 4.85
297 298 2.050144 AGATGATATCCAACGGCCAGT 58.950 47.619 2.24 0.00 0.00 4.00
298 299 3.239449 AGATGATATCCAACGGCCAGTA 58.761 45.455 2.24 0.00 0.00 2.74
299 300 3.259374 AGATGATATCCAACGGCCAGTAG 59.741 47.826 2.24 0.00 0.00 2.57
300 301 2.394632 TGATATCCAACGGCCAGTAGT 58.605 47.619 2.24 0.00 0.00 2.73
301 302 2.102420 TGATATCCAACGGCCAGTAGTG 59.898 50.000 2.24 0.00 0.00 2.74
302 303 0.177141 TATCCAACGGCCAGTAGTGC 59.823 55.000 2.24 0.00 0.00 4.40
303 304 1.553690 ATCCAACGGCCAGTAGTGCT 61.554 55.000 2.24 0.00 0.00 4.40
304 305 1.741770 CCAACGGCCAGTAGTGCTC 60.742 63.158 2.24 0.00 0.00 4.26
305 306 2.094659 CAACGGCCAGTAGTGCTCG 61.095 63.158 2.24 8.56 0.00 5.03
306 307 2.273179 AACGGCCAGTAGTGCTCGA 61.273 57.895 2.24 0.00 0.00 4.04
307 308 1.812686 AACGGCCAGTAGTGCTCGAA 61.813 55.000 2.24 0.00 0.00 3.71
308 309 1.141881 CGGCCAGTAGTGCTCGAAT 59.858 57.895 2.24 0.00 0.00 3.34
309 310 0.460284 CGGCCAGTAGTGCTCGAATT 60.460 55.000 2.24 0.00 0.00 2.17
310 311 1.739067 GGCCAGTAGTGCTCGAATTT 58.261 50.000 0.00 0.00 0.00 1.82
311 312 1.398390 GGCCAGTAGTGCTCGAATTTG 59.602 52.381 0.00 0.00 0.00 2.32
312 313 1.202076 GCCAGTAGTGCTCGAATTTGC 60.202 52.381 0.00 0.00 0.00 3.68
313 314 1.398390 CCAGTAGTGCTCGAATTTGCC 59.602 52.381 0.00 0.00 0.00 4.52
314 315 2.076100 CAGTAGTGCTCGAATTTGCCA 58.924 47.619 0.00 0.00 0.00 4.92
315 316 2.679837 CAGTAGTGCTCGAATTTGCCAT 59.320 45.455 0.00 0.00 0.00 4.40
316 317 2.939103 AGTAGTGCTCGAATTTGCCATC 59.061 45.455 0.00 0.00 0.00 3.51
317 318 2.119801 AGTGCTCGAATTTGCCATCT 57.880 45.000 0.00 0.00 0.00 2.90
318 319 3.266510 AGTGCTCGAATTTGCCATCTA 57.733 42.857 0.00 0.00 0.00 1.98
319 320 3.813443 AGTGCTCGAATTTGCCATCTAT 58.187 40.909 0.00 0.00 0.00 1.98
320 321 3.562973 AGTGCTCGAATTTGCCATCTATG 59.437 43.478 0.00 0.00 0.00 2.23
321 322 2.291465 TGCTCGAATTTGCCATCTATGC 59.709 45.455 0.00 0.00 0.00 3.14
322 323 2.291465 GCTCGAATTTGCCATCTATGCA 59.709 45.455 0.00 0.00 36.84 3.96
323 324 3.851105 GCTCGAATTTGCCATCTATGCAC 60.851 47.826 0.00 0.00 38.72 4.57
324 325 2.618241 TCGAATTTGCCATCTATGCACC 59.382 45.455 0.00 0.00 38.72 5.01
325 326 2.358582 CGAATTTGCCATCTATGCACCA 59.641 45.455 0.00 0.00 38.72 4.17
326 327 3.005050 CGAATTTGCCATCTATGCACCAT 59.995 43.478 0.00 0.00 38.72 3.55
327 328 4.553323 GAATTTGCCATCTATGCACCATC 58.447 43.478 0.00 0.00 38.72 3.51
328 329 1.596603 TTGCCATCTATGCACCATCG 58.403 50.000 0.00 0.00 38.72 3.84
329 330 0.250424 TGCCATCTATGCACCATCGG 60.250 55.000 0.00 0.00 32.85 4.18
330 331 0.035317 GCCATCTATGCACCATCGGA 59.965 55.000 0.00 0.00 0.00 4.55
331 332 1.339438 GCCATCTATGCACCATCGGAT 60.339 52.381 0.00 0.00 0.00 4.18
332 333 2.877300 GCCATCTATGCACCATCGGATT 60.877 50.000 0.00 0.00 0.00 3.01
333 334 2.745821 CCATCTATGCACCATCGGATTG 59.254 50.000 0.00 0.00 0.00 2.67
334 335 2.549064 TCTATGCACCATCGGATTGG 57.451 50.000 0.00 5.32 42.82 3.16
335 336 0.877071 CTATGCACCATCGGATTGGC 59.123 55.000 0.00 3.25 40.68 4.52
336 337 0.473755 TATGCACCATCGGATTGGCT 59.526 50.000 0.00 0.00 40.68 4.75
337 338 0.396139 ATGCACCATCGGATTGGCTT 60.396 50.000 0.00 0.00 40.68 4.35
338 339 1.031571 TGCACCATCGGATTGGCTTC 61.032 55.000 6.43 0.00 40.68 3.86
339 340 1.031571 GCACCATCGGATTGGCTTCA 61.032 55.000 6.43 0.00 40.68 3.02
340 341 1.683943 CACCATCGGATTGGCTTCAT 58.316 50.000 6.43 0.00 40.68 2.57
341 342 1.605710 CACCATCGGATTGGCTTCATC 59.394 52.381 6.43 0.00 40.68 2.92
342 343 1.242076 CCATCGGATTGGCTTCATCC 58.758 55.000 0.00 1.96 0.00 3.51
343 344 1.477377 CCATCGGATTGGCTTCATCCA 60.477 52.381 10.34 0.00 34.22 3.41
349 350 2.941210 TTGGCTTCATCCAACGACC 58.059 52.632 0.00 0.00 40.92 4.79
350 351 0.109532 TTGGCTTCATCCAACGACCA 59.890 50.000 0.00 0.00 40.92 4.02
351 352 0.327924 TGGCTTCATCCAACGACCAT 59.672 50.000 0.00 0.00 32.18 3.55
352 353 1.017387 GGCTTCATCCAACGACCATC 58.983 55.000 0.00 0.00 0.00 3.51
353 354 1.407437 GGCTTCATCCAACGACCATCT 60.407 52.381 0.00 0.00 0.00 2.90
354 355 2.359900 GCTTCATCCAACGACCATCTT 58.640 47.619 0.00 0.00 0.00 2.40
355 356 2.749621 GCTTCATCCAACGACCATCTTT 59.250 45.455 0.00 0.00 0.00 2.52
356 357 3.181506 GCTTCATCCAACGACCATCTTTC 60.182 47.826 0.00 0.00 0.00 2.62
357 358 3.694043 TCATCCAACGACCATCTTTCA 57.306 42.857 0.00 0.00 0.00 2.69
358 359 4.014569 TCATCCAACGACCATCTTTCAA 57.985 40.909 0.00 0.00 0.00 2.69
359 360 4.393834 TCATCCAACGACCATCTTTCAAA 58.606 39.130 0.00 0.00 0.00 2.69
360 361 4.455533 TCATCCAACGACCATCTTTCAAAG 59.544 41.667 0.00 0.00 0.00 2.77
361 362 3.146066 TCCAACGACCATCTTTCAAAGG 58.854 45.455 0.00 0.00 0.00 3.11
362 363 2.884639 CCAACGACCATCTTTCAAAGGT 59.115 45.455 0.00 0.00 37.00 3.50
363 364 4.069304 CCAACGACCATCTTTCAAAGGTA 58.931 43.478 0.00 0.00 33.77 3.08
364 365 4.700213 CCAACGACCATCTTTCAAAGGTAT 59.300 41.667 0.00 0.00 33.77 2.73
365 366 5.183140 CCAACGACCATCTTTCAAAGGTATT 59.817 40.000 0.00 0.00 33.77 1.89
366 367 6.314784 CAACGACCATCTTTCAAAGGTATTC 58.685 40.000 0.00 0.00 33.77 1.75
367 368 4.630069 ACGACCATCTTTCAAAGGTATTCG 59.370 41.667 10.09 10.09 33.77 3.34
368 369 4.494199 CGACCATCTTTCAAAGGTATTCGC 60.494 45.833 0.00 0.00 33.77 4.70
369 370 4.331968 ACCATCTTTCAAAGGTATTCGCA 58.668 39.130 0.00 0.00 31.32 5.10
370 371 4.156008 ACCATCTTTCAAAGGTATTCGCAC 59.844 41.667 0.00 0.00 31.32 5.34
371 372 4.155826 CCATCTTTCAAAGGTATTCGCACA 59.844 41.667 0.00 0.00 0.00 4.57
372 373 4.742438 TCTTTCAAAGGTATTCGCACAC 57.258 40.909 0.00 0.00 0.00 3.82
373 374 4.385825 TCTTTCAAAGGTATTCGCACACT 58.614 39.130 0.00 0.00 0.00 3.55
374 375 5.543714 TCTTTCAAAGGTATTCGCACACTA 58.456 37.500 0.00 0.00 0.00 2.74
375 376 6.170506 TCTTTCAAAGGTATTCGCACACTAT 58.829 36.000 0.00 0.00 0.00 2.12
376 377 7.324935 TCTTTCAAAGGTATTCGCACACTATA 58.675 34.615 0.00 0.00 0.00 1.31
377 378 7.820386 TCTTTCAAAGGTATTCGCACACTATAA 59.180 33.333 0.00 0.00 0.00 0.98
378 379 7.908827 TTCAAAGGTATTCGCACACTATAAA 57.091 32.000 0.00 0.00 0.00 1.40
379 380 7.534085 TCAAAGGTATTCGCACACTATAAAG 57.466 36.000 0.00 0.00 0.00 1.85
380 381 6.537301 TCAAAGGTATTCGCACACTATAAAGG 59.463 38.462 0.00 0.00 0.00 3.11
381 382 4.957296 AGGTATTCGCACACTATAAAGGG 58.043 43.478 0.00 0.00 0.00 3.95
382 383 4.062991 GGTATTCGCACACTATAAAGGGG 58.937 47.826 0.00 0.00 0.00 4.79
383 384 3.926058 ATTCGCACACTATAAAGGGGT 57.074 42.857 0.00 0.00 0.00 4.95
384 385 5.221501 GGTATTCGCACACTATAAAGGGGTA 60.222 44.000 0.00 0.00 0.00 3.69
385 386 5.562298 ATTCGCACACTATAAAGGGGTAT 57.438 39.130 0.00 0.00 0.00 2.73
386 387 6.675413 ATTCGCACACTATAAAGGGGTATA 57.325 37.500 0.00 0.00 0.00 1.47
387 388 5.717078 TCGCACACTATAAAGGGGTATAG 57.283 43.478 0.00 0.00 39.18 1.31
388 389 5.387788 TCGCACACTATAAAGGGGTATAGA 58.612 41.667 6.30 0.00 37.46 1.98
389 390 6.014647 TCGCACACTATAAAGGGGTATAGAT 58.985 40.000 6.30 0.00 37.46 1.98
390 391 6.495872 TCGCACACTATAAAGGGGTATAGATT 59.504 38.462 6.30 0.00 37.46 2.40
391 392 7.670979 TCGCACACTATAAAGGGGTATAGATTA 59.329 37.037 6.30 0.00 37.46 1.75
392 393 7.758528 CGCACACTATAAAGGGGTATAGATTAC 59.241 40.741 6.30 0.00 37.46 1.89
393 394 8.813951 GCACACTATAAAGGGGTATAGATTACT 58.186 37.037 6.30 0.00 37.46 2.24
395 396 9.893975 ACACTATAAAGGGGTATAGATTACTGT 57.106 33.333 6.30 0.00 37.46 3.55
405 406 6.546034 GGGTATAGATTACTGTGTTGCCAATT 59.454 38.462 0.00 0.00 0.00 2.32
406 407 7.068226 GGGTATAGATTACTGTGTTGCCAATTT 59.932 37.037 0.00 0.00 0.00 1.82
425 426 9.555727 GCCAATTTCCATGTATCTTAGTAAGTA 57.444 33.333 9.71 0.00 0.00 2.24
449 450 7.053316 ACAATCTTTGTTGTTCAATGATGGA 57.947 32.000 13.80 0.00 44.55 3.41
450 451 7.149973 ACAATCTTTGTTGTTCAATGATGGAG 58.850 34.615 13.80 8.64 44.55 3.86
458 459 2.118313 TCAATGATGGAGTGTGCCTG 57.882 50.000 0.00 0.00 0.00 4.85
481 482 4.444876 GCCTTTCCATTCCACTAGCTATGA 60.445 45.833 0.00 0.00 0.00 2.15
514 515 3.134081 TCGGGGTAATCTTCATCCACTTC 59.866 47.826 0.00 0.00 0.00 3.01
515 516 3.118408 CGGGGTAATCTTCATCCACTTCA 60.118 47.826 0.00 0.00 0.00 3.02
516 517 4.200092 GGGGTAATCTTCATCCACTTCAC 58.800 47.826 0.00 0.00 0.00 3.18
517 518 4.200092 GGGTAATCTTCATCCACTTCACC 58.800 47.826 0.00 0.00 0.00 4.02
518 519 4.324254 GGGTAATCTTCATCCACTTCACCA 60.324 45.833 0.00 0.00 0.00 4.17
519 520 4.636206 GGTAATCTTCATCCACTTCACCAC 59.364 45.833 0.00 0.00 0.00 4.16
520 521 4.647564 AATCTTCATCCACTTCACCACT 57.352 40.909 0.00 0.00 0.00 4.00
521 522 4.647564 ATCTTCATCCACTTCACCACTT 57.352 40.909 0.00 0.00 0.00 3.16
563 568 7.071196 AGGAATCCATTAGCACTAAGTACATCA 59.929 37.037 0.61 0.00 0.00 3.07
564 569 7.386299 GGAATCCATTAGCACTAAGTACATCAG 59.614 40.741 0.00 0.00 0.00 2.90
565 570 6.791867 TCCATTAGCACTAAGTACATCAGT 57.208 37.500 0.00 0.00 0.00 3.41
566 571 7.182817 TCCATTAGCACTAAGTACATCAGTT 57.817 36.000 0.00 0.00 0.00 3.16
567 572 7.041721 TCCATTAGCACTAAGTACATCAGTTG 58.958 38.462 0.00 0.00 0.00 3.16
574 579 6.590292 GCACTAAGTACATCAGTTGTGTATGT 59.410 38.462 0.00 0.00 39.48 2.29
596 601 8.707796 ATGTTAATCTTCTTATCTAGTCCCGA 57.292 34.615 0.00 0.00 0.00 5.14
616 621 4.033129 CCGATTAATTAAGTCGACGCCAAA 59.967 41.667 21.34 3.74 37.55 3.28
665 670 0.747255 CCCTCGTGTCATCCACCTAG 59.253 60.000 0.00 0.00 41.26 3.02
676 1638 0.976641 TCCACCTAGTTGCTCCACAG 59.023 55.000 0.00 0.00 0.00 3.66
687 1650 0.460987 GCTCCACAGCTATTCGTGCT 60.461 55.000 0.00 0.00 43.09 4.40
688 1651 1.202417 GCTCCACAGCTATTCGTGCTA 60.202 52.381 0.00 0.00 43.09 3.49
689 1652 2.736978 CTCCACAGCTATTCGTGCTAG 58.263 52.381 0.00 0.00 38.92 3.42
765 1728 6.976925 GGTTTGGATCAGCATATCTCTTTTTG 59.023 38.462 0.00 0.00 0.00 2.44
766 1729 7.363268 GGTTTGGATCAGCATATCTCTTTTTGT 60.363 37.037 0.00 0.00 0.00 2.83
767 1730 8.677300 GTTTGGATCAGCATATCTCTTTTTGTA 58.323 33.333 0.00 0.00 0.00 2.41
768 1731 7.792374 TGGATCAGCATATCTCTTTTTGTAC 57.208 36.000 0.00 0.00 0.00 2.90
769 1732 7.568349 TGGATCAGCATATCTCTTTTTGTACT 58.432 34.615 0.00 0.00 0.00 2.73
770 1733 7.712639 TGGATCAGCATATCTCTTTTTGTACTC 59.287 37.037 0.00 0.00 0.00 2.59
771 1734 7.172361 GGATCAGCATATCTCTTTTTGTACTCC 59.828 40.741 0.00 0.00 0.00 3.85
772 1735 6.349300 TCAGCATATCTCTTTTTGTACTCCC 58.651 40.000 0.00 0.00 0.00 4.30
773 1736 6.156949 TCAGCATATCTCTTTTTGTACTCCCT 59.843 38.462 0.00 0.00 0.00 4.20
774 1737 6.825721 CAGCATATCTCTTTTTGTACTCCCTT 59.174 38.462 0.00 0.00 0.00 3.95
775 1738 7.011857 CAGCATATCTCTTTTTGTACTCCCTTC 59.988 40.741 0.00 0.00 0.00 3.46
776 1739 6.018669 GCATATCTCTTTTTGTACTCCCTTCG 60.019 42.308 0.00 0.00 0.00 3.79
777 1740 4.950205 TCTCTTTTTGTACTCCCTTCGT 57.050 40.909 0.00 0.00 0.00 3.85
778 1741 5.286267 TCTCTTTTTGTACTCCCTTCGTT 57.714 39.130 0.00 0.00 0.00 3.85
779 1742 5.295152 TCTCTTTTTGTACTCCCTTCGTTC 58.705 41.667 0.00 0.00 0.00 3.95
780 1743 4.053295 TCTTTTTGTACTCCCTTCGTTCG 58.947 43.478 0.00 0.00 0.00 3.95
781 1744 3.457610 TTTTGTACTCCCTTCGTTCGT 57.542 42.857 0.00 0.00 0.00 3.85
782 1745 3.457610 TTTGTACTCCCTTCGTTCGTT 57.542 42.857 0.00 0.00 0.00 3.85
783 1746 3.457610 TTGTACTCCCTTCGTTCGTTT 57.542 42.857 0.00 0.00 0.00 3.60
784 1747 3.457610 TGTACTCCCTTCGTTCGTTTT 57.542 42.857 0.00 0.00 0.00 2.43
785 1748 3.795877 TGTACTCCCTTCGTTCGTTTTT 58.204 40.909 0.00 0.00 0.00 1.94
786 1749 4.942852 TGTACTCCCTTCGTTCGTTTTTA 58.057 39.130 0.00 0.00 0.00 1.52
787 1750 5.540911 TGTACTCCCTTCGTTCGTTTTTAT 58.459 37.500 0.00 0.00 0.00 1.40
788 1751 6.686630 TGTACTCCCTTCGTTCGTTTTTATA 58.313 36.000 0.00 0.00 0.00 0.98
789 1752 7.151308 TGTACTCCCTTCGTTCGTTTTTATAA 58.849 34.615 0.00 0.00 0.00 0.98
790 1753 6.716898 ACTCCCTTCGTTCGTTTTTATAAG 57.283 37.500 0.00 0.00 0.00 1.73
791 1754 6.458210 ACTCCCTTCGTTCGTTTTTATAAGA 58.542 36.000 0.00 0.00 0.00 2.10
792 1755 6.367149 ACTCCCTTCGTTCGTTTTTATAAGAC 59.633 38.462 0.00 0.00 0.00 3.01
793 1756 5.345741 TCCCTTCGTTCGTTTTTATAAGACG 59.654 40.000 13.97 13.97 38.09 4.18
794 1757 5.119125 CCCTTCGTTCGTTTTTATAAGACGT 59.881 40.000 17.49 0.00 37.95 4.34
795 1758 6.346838 CCCTTCGTTCGTTTTTATAAGACGTT 60.347 38.462 17.49 0.00 37.95 3.99
796 1759 7.065283 CCTTCGTTCGTTTTTATAAGACGTTT 58.935 34.615 17.49 0.00 37.95 3.60
797 1760 7.264868 CCTTCGTTCGTTTTTATAAGACGTTTC 59.735 37.037 17.49 11.05 37.95 2.78
798 1761 7.159437 TCGTTCGTTTTTATAAGACGTTTCA 57.841 32.000 17.49 2.62 37.95 2.69
799 1762 7.275785 TCGTTCGTTTTTATAAGACGTTTCAG 58.724 34.615 17.49 9.81 37.95 3.02
800 1763 7.167302 TCGTTCGTTTTTATAAGACGTTTCAGA 59.833 33.333 17.49 11.19 37.95 3.27
801 1764 7.262789 CGTTCGTTTTTATAAGACGTTTCAGAC 59.737 37.037 17.49 10.19 37.95 3.51
802 1765 7.697352 TCGTTTTTATAAGACGTTTCAGACA 57.303 32.000 17.49 0.78 37.95 3.41
803 1766 7.780313 TCGTTTTTATAAGACGTTTCAGACAG 58.220 34.615 17.49 0.00 37.95 3.51
804 1767 6.515340 CGTTTTTATAAGACGTTTCAGACAGC 59.485 38.462 12.62 0.00 32.52 4.40
805 1768 7.568861 CGTTTTTATAAGACGTTTCAGACAGCT 60.569 37.037 12.62 0.00 32.52 4.24
806 1769 6.706055 TTTATAAGACGTTTCAGACAGCTG 57.294 37.500 13.48 13.48 43.67 4.24
818 1781 5.023533 TCAGACAGCTGAGTTTAAACTGT 57.976 39.130 25.17 16.45 45.88 3.55
819 1782 5.428253 TCAGACAGCTGAGTTTAAACTGTT 58.572 37.500 25.17 7.35 45.88 3.16
820 1783 5.880332 TCAGACAGCTGAGTTTAAACTGTTT 59.120 36.000 25.17 10.98 45.88 2.83
821 1784 7.045416 TCAGACAGCTGAGTTTAAACTGTTTA 58.955 34.615 25.17 8.84 45.88 2.01
822 1785 7.224753 TCAGACAGCTGAGTTTAAACTGTTTAG 59.775 37.037 25.17 16.76 45.88 1.85
823 1786 7.011482 CAGACAGCTGAGTTTAAACTGTTTAGT 59.989 37.037 25.17 16.52 45.17 2.24
824 1787 8.202137 AGACAGCTGAGTTTAAACTGTTTAGTA 58.798 33.333 25.17 3.70 41.45 1.82
825 1788 8.139521 ACAGCTGAGTTTAAACTGTTTAGTAC 57.860 34.615 25.17 13.65 38.38 2.73
826 1789 7.767198 ACAGCTGAGTTTAAACTGTTTAGTACA 59.233 33.333 25.17 12.66 38.38 2.90
827 1790 8.062448 CAGCTGAGTTTAAACTGTTTAGTACAC 58.938 37.037 25.17 16.63 39.88 2.90
828 1791 7.985752 AGCTGAGTTTAAACTGTTTAGTACACT 59.014 33.333 25.17 16.45 39.88 3.55
829 1792 8.062448 GCTGAGTTTAAACTGTTTAGTACACTG 58.938 37.037 25.17 18.39 39.88 3.66
830 1793 9.095065 CTGAGTTTAAACTGTTTAGTACACTGT 57.905 33.333 25.17 0.00 39.88 3.55
831 1794 9.090692 TGAGTTTAAACTGTTTAGTACACTGTC 57.909 33.333 25.17 5.95 39.88 3.51
832 1795 9.310716 GAGTTTAAACTGTTTAGTACACTGTCT 57.689 33.333 25.17 0.00 39.88 3.41
833 1796 9.095065 AGTTTAAACTGTTTAGTACACTGTCTG 57.905 33.333 19.94 0.00 37.98 3.51
834 1797 9.090692 GTTTAAACTGTTTAGTACACTGTCTGA 57.909 33.333 11.18 0.00 35.69 3.27
835 1798 9.656040 TTTAAACTGTTTAGTACACTGTCTGAA 57.344 29.630 12.30 0.00 35.69 3.02
836 1799 9.826574 TTAAACTGTTTAGTACACTGTCTGAAT 57.173 29.630 12.30 0.00 35.69 2.57
837 1800 8.732746 AAACTGTTTAGTACACTGTCTGAATT 57.267 30.769 3.51 0.00 35.69 2.17
838 1801 8.732746 AACTGTTTAGTACACTGTCTGAATTT 57.267 30.769 0.00 0.00 35.69 1.82
839 1802 9.826574 AACTGTTTAGTACACTGTCTGAATTTA 57.173 29.630 0.00 0.00 35.69 1.40
840 1803 9.257651 ACTGTTTAGTACACTGTCTGAATTTAC 57.742 33.333 0.00 0.00 34.74 2.01
841 1804 9.477484 CTGTTTAGTACACTGTCTGAATTTACT 57.523 33.333 0.00 0.00 32.10 2.24
847 1810 8.975439 AGTACACTGTCTGAATTTACTAAAACG 58.025 33.333 0.00 0.00 0.00 3.60
848 1811 7.781548 ACACTGTCTGAATTTACTAAAACGT 57.218 32.000 0.00 0.00 0.00 3.99
849 1812 7.848491 ACACTGTCTGAATTTACTAAAACGTC 58.152 34.615 0.00 0.00 0.00 4.34
850 1813 7.709613 ACACTGTCTGAATTTACTAAAACGTCT 59.290 33.333 0.00 0.00 0.00 4.18
851 1814 8.548721 CACTGTCTGAATTTACTAAAACGTCTT 58.451 33.333 0.00 0.00 0.00 3.01
852 1815 9.754382 ACTGTCTGAATTTACTAAAACGTCTTA 57.246 29.630 0.00 0.00 0.00 2.10
868 1831 9.813446 AAAACGTCTTATATAAGTAACAGAGGG 57.187 33.333 19.58 4.30 34.93 4.30
869 1832 8.757982 AACGTCTTATATAAGTAACAGAGGGA 57.242 34.615 19.58 0.00 34.93 4.20
887 1850 2.614057 GGGAGTATGCCTGATCAAAACG 59.386 50.000 0.00 0.00 46.86 3.60
889 1852 2.614057 GAGTATGCCTGATCAAAACGGG 59.386 50.000 0.00 0.00 36.91 5.28
910 1873 3.129638 GGCGTCACCATATCTCTATCTCC 59.870 52.174 0.00 0.00 38.86 3.71
935 1898 0.036732 TTGCATCACTTCTTCGGCCT 59.963 50.000 0.00 0.00 0.00 5.19
937 1900 0.729690 GCATCACTTCTTCGGCCTTC 59.270 55.000 0.00 0.00 0.00 3.46
939 1902 2.275318 CATCACTTCTTCGGCCTTCTC 58.725 52.381 0.00 0.00 0.00 2.87
940 1903 0.608640 TCACTTCTTCGGCCTTCTCC 59.391 55.000 0.00 0.00 0.00 3.71
957 1937 0.610785 TCCCCGAAGCAAACCCATTC 60.611 55.000 0.00 0.00 0.00 2.67
1014 1994 1.306568 TCCCATGGATCCACCGTCA 60.307 57.895 18.99 0.00 42.61 4.35
1017 2003 1.601703 CATGGATCCACCGTCACCA 59.398 57.895 18.99 0.00 42.61 4.17
1020 2006 2.589157 GGATCCACCGTCACCACCA 61.589 63.158 6.95 0.00 0.00 4.17
1023 2009 1.488705 ATCCACCGTCACCACCACAT 61.489 55.000 0.00 0.00 0.00 3.21
1029 2015 1.078709 CGTCACCACCACATGATCAC 58.921 55.000 0.00 0.00 0.00 3.06
1034 2020 1.083806 CCACCACATGATCACGGTCG 61.084 60.000 9.75 2.10 0.00 4.79
1053 2039 1.319541 GGCATGAGCAAGAGCATCAT 58.680 50.000 0.00 0.00 45.49 2.45
1056 2042 2.031595 GCATGAGCAAGAGCATCATCAG 60.032 50.000 0.00 0.00 45.49 2.90
1057 2043 2.327200 TGAGCAAGAGCATCATCAGG 57.673 50.000 0.00 0.00 45.49 3.86
1058 2044 1.835531 TGAGCAAGAGCATCATCAGGA 59.164 47.619 0.00 0.00 45.49 3.86
1170 2168 0.107703 TCATCGGCATGAACCTCACC 60.108 55.000 0.00 0.00 35.99 4.02
1479 2477 2.815211 CCCGACATCGCAGTGGTG 60.815 66.667 0.00 0.00 38.18 4.17
1704 2702 4.517703 CTCGTCGTCGCGGTCCTC 62.518 72.222 6.13 0.00 36.96 3.71
1821 2819 1.599576 GGAGGAGACCAAGACTGCC 59.400 63.158 0.00 0.00 0.00 4.85
1920 2918 2.362369 CCTGATCCTGCTCACGGGT 61.362 63.158 0.00 0.00 43.58 5.28
2040 3038 2.964925 GTGCGCGTGTCCAACTCA 60.965 61.111 8.43 0.00 0.00 3.41
2428 3426 4.415150 CGGCCAGCCTGATGGTGT 62.415 66.667 2.24 0.00 42.75 4.16
2523 3521 2.666994 CGATGATGATCGGAATGCTGAG 59.333 50.000 6.67 0.00 46.51 3.35
2525 3523 1.155042 GATGATCGGAATGCTGAGCC 58.845 55.000 0.23 0.00 34.93 4.70
2562 3563 1.568612 ATGCTGCTGACGTTTGACCG 61.569 55.000 0.00 0.00 0.00 4.79
2568 3569 1.862827 GCTGACGTTTGACCGTAACTT 59.137 47.619 0.00 0.00 41.98 2.66
2630 3640 9.803315 TGTACATACTACATGAAGATGAAACTC 57.197 33.333 0.00 0.00 33.36 3.01
2631 3641 9.250624 GTACATACTACATGAAGATGAAACTCC 57.749 37.037 0.00 0.00 33.36 3.85
2632 3642 7.275920 ACATACTACATGAAGATGAAACTCCC 58.724 38.462 0.00 0.00 33.36 4.30
2633 3643 5.762179 ACTACATGAAGATGAAACTCCCA 57.238 39.130 0.00 0.00 33.36 4.37
2657 3667 4.987912 TGGAGATTTTGTTTTGAAATCGGC 59.012 37.500 4.50 2.17 44.35 5.54
2662 3672 5.710613 TTTTGTTTTGAAATCGGCAGAAC 57.289 34.783 0.00 0.00 32.73 3.01
2739 3749 5.028549 ACATTGTTTCACTCACTCACTCT 57.971 39.130 0.00 0.00 0.00 3.24
2806 3830 6.216750 TGAAACTTTTGTGTTTTGGAAACG 57.783 33.333 0.00 0.00 39.86 3.60
2812 3836 6.874664 ACTTTTGTGTTTTGGAAACGGTAAAT 59.125 30.769 0.00 0.00 0.00 1.40
2826 3850 9.292846 GGAAACGGTAAATTTATAATTGTGTCC 57.707 33.333 0.31 6.48 0.00 4.02
2859 3883 1.633774 AGGTGATGAGTGGACTCGTT 58.366 50.000 3.05 0.00 45.72 3.85
2883 4712 2.275318 CATTTTCCTCTCCGAGTGAGC 58.725 52.381 0.00 0.00 41.18 4.26
2905 4734 8.443160 TGAGCACTTTATTTTGAATAGTTCGAG 58.557 33.333 0.00 0.00 0.00 4.04
2917 4746 9.825972 TTTGAATAGTTCGAGAATCACATTTTC 57.174 29.630 0.00 0.00 33.17 2.29
2923 4752 7.355778 AGTTCGAGAATCACATTTTCAAGTTC 58.644 34.615 0.00 0.00 33.17 3.01
2975 4805 9.271828 TCACATGGATGTATATTACACATGTTC 57.728 33.333 15.58 0.00 45.88 3.18
3011 4841 6.573664 TCATGATTTTAGGTCACCTGTTTG 57.426 37.500 6.61 0.00 34.61 2.93
3111 4948 3.057315 AGTGTGCAAAATATGGTGTCAGC 60.057 43.478 0.00 0.00 0.00 4.26
3117 4954 4.012374 CAAAATATGGTGTCAGCTGGAGT 58.988 43.478 15.13 0.00 0.00 3.85
3136 4973 6.282167 TGGAGTACGTTCAACAAAGTGAATA 58.718 36.000 0.00 0.00 39.61 1.75
3144 4982 8.132362 ACGTTCAACAAAGTGAATATTTTGCTA 58.868 29.630 0.00 0.00 39.61 3.49
3157 4995 2.816777 TTTGCTACCATGCCACCATA 57.183 45.000 0.00 0.00 0.00 2.74
3239 5081 0.998145 AATTGAGCAAGAGAGGCCCT 59.002 50.000 0.00 0.00 0.00 5.19
3240 5082 0.255318 ATTGAGCAAGAGAGGCCCTG 59.745 55.000 0.00 0.00 0.00 4.45
3241 5083 2.124778 GAGCAAGAGAGGCCCTGC 60.125 66.667 0.00 0.60 0.00 4.85
3333 5176 0.539438 TCACTCGCAAAGGGCCAATT 60.539 50.000 6.18 0.00 40.31 2.32
3371 5214 1.637338 TGCATTACAACATTGGGGCA 58.363 45.000 0.00 0.00 0.00 5.36
3375 5218 3.491447 GCATTACAACATTGGGGCATCTC 60.491 47.826 0.00 0.00 0.00 2.75
3382 5225 2.242965 ACATTGGGGCATCTCTGATTCA 59.757 45.455 0.00 0.00 0.00 2.57
3412 5255 9.788960 GATTCTAAAAACGCAGGAATAGAAAAT 57.211 29.630 0.00 0.00 34.25 1.82
3449 5295 1.622811 TGTCATGCCAATTTCAACCCC 59.377 47.619 0.00 0.00 0.00 4.95
3452 5298 0.607620 ATGCCAATTTCAACCCCACG 59.392 50.000 0.00 0.00 0.00 4.94
3453 5299 1.291906 GCCAATTTCAACCCCACGG 59.708 57.895 0.00 0.00 0.00 4.94
3483 5330 8.755696 TTGGTTTGTTTGATTGCATAATAGAC 57.244 30.769 0.00 0.00 0.00 2.59
3525 5372 8.980481 TCAAAGAGGTTTGAGTAGAAAAATCT 57.020 30.769 0.00 0.00 45.82 2.40
3526 5373 9.408648 TCAAAGAGGTTTGAGTAGAAAAATCTT 57.591 29.630 0.00 0.00 45.82 2.40
3530 5377 8.989980 AGAGGTTTGAGTAGAAAAATCTTAACG 58.010 33.333 0.00 0.00 26.89 3.18
3531 5378 8.095937 AGGTTTGAGTAGAAAAATCTTAACGG 57.904 34.615 0.00 0.00 0.00 4.44
3532 5379 7.935210 AGGTTTGAGTAGAAAAATCTTAACGGA 59.065 33.333 0.00 0.00 0.00 4.69
3533 5380 8.727910 GGTTTGAGTAGAAAAATCTTAACGGAT 58.272 33.333 0.00 0.00 0.00 4.18
3534 5381 9.756461 GTTTGAGTAGAAAAATCTTAACGGATC 57.244 33.333 0.00 0.00 0.00 3.36
3535 5382 8.488651 TTGAGTAGAAAAATCTTAACGGATCC 57.511 34.615 0.00 0.00 0.00 3.36
3536 5383 6.755141 TGAGTAGAAAAATCTTAACGGATCCG 59.245 38.462 32.20 32.20 46.03 4.18
3537 5384 6.870769 AGTAGAAAAATCTTAACGGATCCGA 58.129 36.000 39.55 18.27 42.83 4.55
3538 5385 7.498443 AGTAGAAAAATCTTAACGGATCCGAT 58.502 34.615 39.55 30.41 42.83 4.18
3539 5386 6.846325 AGAAAAATCTTAACGGATCCGATC 57.154 37.500 39.55 18.62 42.83 3.69
3540 5387 5.758784 AGAAAAATCTTAACGGATCCGATCC 59.241 40.000 39.55 16.53 46.22 3.36
3553 5400 5.551233 GGATCCGATCCTATGAATCAAACA 58.449 41.667 18.84 0.00 46.19 2.83
3554 5401 5.997746 GGATCCGATCCTATGAATCAAACAA 59.002 40.000 18.84 0.00 46.19 2.83
3555 5402 6.148480 GGATCCGATCCTATGAATCAAACAAG 59.852 42.308 18.84 0.00 46.19 3.16
3556 5403 4.816385 TCCGATCCTATGAATCAAACAAGC 59.184 41.667 0.00 0.00 0.00 4.01
3557 5404 4.576053 CCGATCCTATGAATCAAACAAGCA 59.424 41.667 0.00 0.00 0.00 3.91
3558 5405 5.066375 CCGATCCTATGAATCAAACAAGCAA 59.934 40.000 0.00 0.00 0.00 3.91
3559 5406 5.967674 CGATCCTATGAATCAAACAAGCAAC 59.032 40.000 0.00 0.00 0.00 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
73 74 9.904647 CGCACAATTTCATGGATTTTAAAATAG 57.095 29.630 13.34 4.95 0.00 1.73
74 75 9.429359 ACGCACAATTTCATGGATTTTAAAATA 57.571 25.926 13.34 0.00 0.00 1.40
75 76 8.321650 ACGCACAATTTCATGGATTTTAAAAT 57.678 26.923 13.24 13.24 0.00 1.82
76 77 7.721286 ACGCACAATTTCATGGATTTTAAAA 57.279 28.000 2.51 2.51 0.00 1.52
77 78 7.225538 ACAACGCACAATTTCATGGATTTTAAA 59.774 29.630 0.00 0.00 0.00 1.52
78 79 6.703607 ACAACGCACAATTTCATGGATTTTAA 59.296 30.769 0.00 0.00 0.00 1.52
79 80 6.219473 ACAACGCACAATTTCATGGATTTTA 58.781 32.000 0.00 0.00 0.00 1.52
80 81 5.055812 ACAACGCACAATTTCATGGATTTT 58.944 33.333 0.00 0.00 0.00 1.82
81 82 4.630111 ACAACGCACAATTTCATGGATTT 58.370 34.783 0.00 0.00 0.00 2.17
82 83 4.255833 ACAACGCACAATTTCATGGATT 57.744 36.364 0.00 0.00 0.00 3.01
83 84 3.940209 ACAACGCACAATTTCATGGAT 57.060 38.095 0.00 0.00 0.00 3.41
84 85 4.320861 CCTTACAACGCACAATTTCATGGA 60.321 41.667 0.00 0.00 0.00 3.41
85 86 3.919804 CCTTACAACGCACAATTTCATGG 59.080 43.478 0.00 0.00 0.00 3.66
86 87 3.364621 GCCTTACAACGCACAATTTCATG 59.635 43.478 0.00 0.00 0.00 3.07
87 88 3.005261 TGCCTTACAACGCACAATTTCAT 59.995 39.130 0.00 0.00 0.00 2.57
88 89 2.359214 TGCCTTACAACGCACAATTTCA 59.641 40.909 0.00 0.00 0.00 2.69
89 90 3.006659 TGCCTTACAACGCACAATTTC 57.993 42.857 0.00 0.00 0.00 2.17
90 91 3.658757 ATGCCTTACAACGCACAATTT 57.341 38.095 0.00 0.00 37.93 1.82
91 92 4.775058 TTATGCCTTACAACGCACAATT 57.225 36.364 0.00 0.00 37.93 2.32
92 93 4.217550 ACTTTATGCCTTACAACGCACAAT 59.782 37.500 0.00 0.00 37.93 2.71
93 94 3.566322 ACTTTATGCCTTACAACGCACAA 59.434 39.130 0.00 0.00 37.93 3.33
94 95 3.142951 ACTTTATGCCTTACAACGCACA 58.857 40.909 0.00 0.00 37.93 4.57
95 96 3.824414 ACTTTATGCCTTACAACGCAC 57.176 42.857 0.00 0.00 37.93 5.34
96 97 5.943706 TTTACTTTATGCCTTACAACGCA 57.056 34.783 0.00 0.00 39.79 5.24
97 98 6.637658 TGTTTTTACTTTATGCCTTACAACGC 59.362 34.615 0.00 0.00 0.00 4.84
98 99 8.563289 TTGTTTTTACTTTATGCCTTACAACG 57.437 30.769 0.00 0.00 0.00 4.10
105 106 9.161629 GCCATTATTTGTTTTTACTTTATGCCT 57.838 29.630 0.00 0.00 0.00 4.75
106 107 8.940952 TGCCATTATTTGTTTTTACTTTATGCC 58.059 29.630 0.00 0.00 0.00 4.40
143 144 9.617523 CTTCCATATCTTAATTGCCCAATTTTT 57.382 29.630 11.08 0.00 40.99 1.94
144 145 8.991275 TCTTCCATATCTTAATTGCCCAATTTT 58.009 29.630 11.08 0.00 40.99 1.82
145 146 8.551682 TCTTCCATATCTTAATTGCCCAATTT 57.448 30.769 11.08 0.00 40.99 1.82
146 147 8.731591 ATCTTCCATATCTTAATTGCCCAATT 57.268 30.769 10.69 10.69 42.95 2.32
147 148 8.731591 AATCTTCCATATCTTAATTGCCCAAT 57.268 30.769 0.00 0.00 0.00 3.16
148 149 8.006564 AGAATCTTCCATATCTTAATTGCCCAA 58.993 33.333 0.00 0.00 0.00 4.12
149 150 7.529555 AGAATCTTCCATATCTTAATTGCCCA 58.470 34.615 0.00 0.00 0.00 5.36
150 151 9.171877 CTAGAATCTTCCATATCTTAATTGCCC 57.828 37.037 0.00 0.00 0.00 5.36
151 152 9.950496 TCTAGAATCTTCCATATCTTAATTGCC 57.050 33.333 0.00 0.00 0.00 4.52
158 159 9.844257 CCTTTGTTCTAGAATCTTCCATATCTT 57.156 33.333 8.75 0.00 0.00 2.40
159 160 9.218525 TCCTTTGTTCTAGAATCTTCCATATCT 57.781 33.333 8.75 0.00 0.00 1.98
160 161 9.487790 CTCCTTTGTTCTAGAATCTTCCATATC 57.512 37.037 8.75 0.00 0.00 1.63
161 162 9.218525 TCTCCTTTGTTCTAGAATCTTCCATAT 57.781 33.333 8.75 0.00 0.00 1.78
162 163 8.609617 TCTCCTTTGTTCTAGAATCTTCCATA 57.390 34.615 8.75 0.00 0.00 2.74
163 164 7.502060 TCTCCTTTGTTCTAGAATCTTCCAT 57.498 36.000 8.75 0.00 0.00 3.41
164 165 6.935240 TCTCCTTTGTTCTAGAATCTTCCA 57.065 37.500 8.75 0.00 0.00 3.53
165 166 7.333174 CACTTCTCCTTTGTTCTAGAATCTTCC 59.667 40.741 8.75 0.00 0.00 3.46
166 167 7.148490 GCACTTCTCCTTTGTTCTAGAATCTTC 60.148 40.741 8.75 0.00 0.00 2.87
167 168 6.652900 GCACTTCTCCTTTGTTCTAGAATCTT 59.347 38.462 8.75 0.00 0.00 2.40
168 169 6.013812 AGCACTTCTCCTTTGTTCTAGAATCT 60.014 38.462 8.75 0.00 0.00 2.40
169 170 6.169800 AGCACTTCTCCTTTGTTCTAGAATC 58.830 40.000 8.75 3.48 0.00 2.52
170 171 6.120507 AGCACTTCTCCTTTGTTCTAGAAT 57.879 37.500 8.75 0.00 0.00 2.40
171 172 5.552870 AGCACTTCTCCTTTGTTCTAGAA 57.447 39.130 0.00 0.00 0.00 2.10
172 173 5.163301 ACAAGCACTTCTCCTTTGTTCTAGA 60.163 40.000 0.00 0.00 0.00 2.43
173 174 5.049818 CACAAGCACTTCTCCTTTGTTCTAG 60.050 44.000 0.00 0.00 0.00 2.43
174 175 4.816385 CACAAGCACTTCTCCTTTGTTCTA 59.184 41.667 0.00 0.00 0.00 2.10
175 176 3.629398 CACAAGCACTTCTCCTTTGTTCT 59.371 43.478 0.00 0.00 0.00 3.01
176 177 3.378427 ACACAAGCACTTCTCCTTTGTTC 59.622 43.478 0.00 0.00 0.00 3.18
177 178 3.356290 ACACAAGCACTTCTCCTTTGTT 58.644 40.909 0.00 0.00 0.00 2.83
178 179 3.004752 ACACAAGCACTTCTCCTTTGT 57.995 42.857 0.00 0.00 0.00 2.83
179 180 4.376340 AAACACAAGCACTTCTCCTTTG 57.624 40.909 0.00 0.00 0.00 2.77
180 181 4.462483 TCAAAACACAAGCACTTCTCCTTT 59.538 37.500 0.00 0.00 0.00 3.11
181 182 4.016444 TCAAAACACAAGCACTTCTCCTT 58.984 39.130 0.00 0.00 0.00 3.36
182 183 3.620488 TCAAAACACAAGCACTTCTCCT 58.380 40.909 0.00 0.00 0.00 3.69
183 184 3.243201 CCTCAAAACACAAGCACTTCTCC 60.243 47.826 0.00 0.00 0.00 3.71
184 185 3.378427 ACCTCAAAACACAAGCACTTCTC 59.622 43.478 0.00 0.00 0.00 2.87
185 186 3.356290 ACCTCAAAACACAAGCACTTCT 58.644 40.909 0.00 0.00 0.00 2.85
186 187 3.782889 ACCTCAAAACACAAGCACTTC 57.217 42.857 0.00 0.00 0.00 3.01
187 188 4.244862 CAAACCTCAAAACACAAGCACTT 58.755 39.130 0.00 0.00 0.00 3.16
188 189 3.258123 ACAAACCTCAAAACACAAGCACT 59.742 39.130 0.00 0.00 0.00 4.40
189 190 3.367630 CACAAACCTCAAAACACAAGCAC 59.632 43.478 0.00 0.00 0.00 4.40
190 191 3.583806 CACAAACCTCAAAACACAAGCA 58.416 40.909 0.00 0.00 0.00 3.91
191 192 2.348362 GCACAAACCTCAAAACACAAGC 59.652 45.455 0.00 0.00 0.00 4.01
192 193 3.583806 TGCACAAACCTCAAAACACAAG 58.416 40.909 0.00 0.00 0.00 3.16
193 194 3.667497 TGCACAAACCTCAAAACACAA 57.333 38.095 0.00 0.00 0.00 3.33
194 195 3.883830 ATGCACAAACCTCAAAACACA 57.116 38.095 0.00 0.00 0.00 3.72
195 196 5.333263 GCATAATGCACAAACCTCAAAACAC 60.333 40.000 0.00 0.00 44.26 3.32
196 197 4.749099 GCATAATGCACAAACCTCAAAACA 59.251 37.500 0.00 0.00 44.26 2.83
197 198 5.268107 GCATAATGCACAAACCTCAAAAC 57.732 39.130 0.00 0.00 44.26 2.43
211 212 5.750067 CCATGGTTGAACTTAAGCATAATGC 59.250 40.000 2.57 0.00 44.36 3.56
212 213 7.099266 TCCATGGTTGAACTTAAGCATAATG 57.901 36.000 12.58 0.00 44.36 1.90
213 214 6.891908 ACTCCATGGTTGAACTTAAGCATAAT 59.108 34.615 12.58 0.00 44.36 1.28
214 215 6.245408 ACTCCATGGTTGAACTTAAGCATAA 58.755 36.000 12.58 0.00 44.36 1.90
215 216 5.815581 ACTCCATGGTTGAACTTAAGCATA 58.184 37.500 12.58 0.00 44.36 3.14
216 217 4.666512 ACTCCATGGTTGAACTTAAGCAT 58.333 39.130 12.58 0.00 46.36 3.79
217 218 4.072131 GACTCCATGGTTGAACTTAAGCA 58.928 43.478 12.58 0.00 41.63 3.91
218 219 4.327680 AGACTCCATGGTTGAACTTAAGC 58.672 43.478 12.58 0.00 0.00 3.09
219 220 6.234177 AGAAGACTCCATGGTTGAACTTAAG 58.766 40.000 12.58 0.00 0.00 1.85
220 221 6.187727 AGAAGACTCCATGGTTGAACTTAA 57.812 37.500 12.58 0.00 0.00 1.85
221 222 5.825593 AGAAGACTCCATGGTTGAACTTA 57.174 39.130 12.58 0.00 0.00 2.24
222 223 4.713792 AGAAGACTCCATGGTTGAACTT 57.286 40.909 12.58 15.01 0.00 2.66
223 224 5.087323 TCTAGAAGACTCCATGGTTGAACT 58.913 41.667 12.58 8.25 0.00 3.01
224 225 5.407407 TCTAGAAGACTCCATGGTTGAAC 57.593 43.478 12.58 6.52 0.00 3.18
225 226 6.013379 ACAATCTAGAAGACTCCATGGTTGAA 60.013 38.462 12.58 0.00 0.00 2.69
226 227 5.485353 ACAATCTAGAAGACTCCATGGTTGA 59.515 40.000 12.58 0.00 0.00 3.18
227 228 5.738909 ACAATCTAGAAGACTCCATGGTTG 58.261 41.667 12.58 8.75 0.00 3.77
228 229 6.440647 TGTACAATCTAGAAGACTCCATGGTT 59.559 38.462 12.58 0.00 0.00 3.67
229 230 5.958380 TGTACAATCTAGAAGACTCCATGGT 59.042 40.000 12.58 0.00 0.00 3.55
230 231 6.471233 TGTACAATCTAGAAGACTCCATGG 57.529 41.667 4.97 4.97 0.00 3.66
231 232 7.437565 CACATGTACAATCTAGAAGACTCCATG 59.562 40.741 0.00 14.79 0.00 3.66
232 233 7.418368 CCACATGTACAATCTAGAAGACTCCAT 60.418 40.741 0.00 0.00 0.00 3.41
233 234 6.127338 CCACATGTACAATCTAGAAGACTCCA 60.127 42.308 0.00 0.00 0.00 3.86
234 235 6.276847 CCACATGTACAATCTAGAAGACTCC 58.723 44.000 0.00 0.00 0.00 3.85
235 236 5.751028 GCCACATGTACAATCTAGAAGACTC 59.249 44.000 0.00 0.00 0.00 3.36
236 237 5.187772 TGCCACATGTACAATCTAGAAGACT 59.812 40.000 0.00 0.00 0.00 3.24
237 238 5.419542 TGCCACATGTACAATCTAGAAGAC 58.580 41.667 0.00 0.00 0.00 3.01
238 239 5.675684 TGCCACATGTACAATCTAGAAGA 57.324 39.130 0.00 0.00 0.00 2.87
239 240 6.741992 TTTGCCACATGTACAATCTAGAAG 57.258 37.500 12.72 0.00 0.00 2.85
240 241 7.611467 AGATTTTGCCACATGTACAATCTAGAA 59.389 33.333 12.72 6.01 29.66 2.10
241 242 7.066163 CAGATTTTGCCACATGTACAATCTAGA 59.934 37.037 12.72 0.00 30.19 2.43
242 243 7.066163 TCAGATTTTGCCACATGTACAATCTAG 59.934 37.037 12.72 9.24 30.19 2.43
243 244 6.883756 TCAGATTTTGCCACATGTACAATCTA 59.116 34.615 12.72 4.56 30.19 1.98
244 245 5.711506 TCAGATTTTGCCACATGTACAATCT 59.288 36.000 12.72 10.94 31.16 2.40
245 246 5.953183 TCAGATTTTGCCACATGTACAATC 58.047 37.500 12.72 9.27 0.00 2.67
246 247 5.981088 TCAGATTTTGCCACATGTACAAT 57.019 34.783 12.72 1.57 0.00 2.71
247 248 5.336610 CCATCAGATTTTGCCACATGTACAA 60.337 40.000 0.00 3.48 0.00 2.41
248 249 4.158209 CCATCAGATTTTGCCACATGTACA 59.842 41.667 0.00 0.00 0.00 2.90
249 250 4.398988 TCCATCAGATTTTGCCACATGTAC 59.601 41.667 0.00 0.00 0.00 2.90
250 251 4.598022 TCCATCAGATTTTGCCACATGTA 58.402 39.130 0.00 0.00 0.00 2.29
251 252 3.433343 TCCATCAGATTTTGCCACATGT 58.567 40.909 0.00 0.00 0.00 3.21
252 253 4.459390 TTCCATCAGATTTTGCCACATG 57.541 40.909 0.00 0.00 0.00 3.21
253 254 4.468510 ACATTCCATCAGATTTTGCCACAT 59.531 37.500 0.00 0.00 0.00 3.21
254 255 3.833650 ACATTCCATCAGATTTTGCCACA 59.166 39.130 0.00 0.00 0.00 4.17
255 256 4.460948 ACATTCCATCAGATTTTGCCAC 57.539 40.909 0.00 0.00 0.00 5.01
256 257 5.508567 TCTACATTCCATCAGATTTTGCCA 58.491 37.500 0.00 0.00 0.00 4.92
257 258 6.263842 TCATCTACATTCCATCAGATTTTGCC 59.736 38.462 0.00 0.00 0.00 4.52
258 259 7.268199 TCATCTACATTCCATCAGATTTTGC 57.732 36.000 0.00 0.00 0.00 3.68
261 262 9.902684 GGATATCATCTACATTCCATCAGATTT 57.097 33.333 4.83 0.00 0.00 2.17
262 263 9.054580 TGGATATCATCTACATTCCATCAGATT 57.945 33.333 4.83 0.00 0.00 2.40
263 264 8.619683 TGGATATCATCTACATTCCATCAGAT 57.380 34.615 4.83 0.00 0.00 2.90
264 265 8.316946 GTTGGATATCATCTACATTCCATCAGA 58.683 37.037 4.83 0.00 33.53 3.27
265 266 7.277319 CGTTGGATATCATCTACATTCCATCAG 59.723 40.741 4.83 0.00 33.53 2.90
266 267 7.099120 CGTTGGATATCATCTACATTCCATCA 58.901 38.462 4.83 0.00 33.53 3.07
267 268 6.536582 CCGTTGGATATCATCTACATTCCATC 59.463 42.308 4.83 0.00 33.53 3.51
268 269 6.409704 CCGTTGGATATCATCTACATTCCAT 58.590 40.000 4.83 0.00 33.53 3.41
269 270 5.793817 CCGTTGGATATCATCTACATTCCA 58.206 41.667 4.83 0.00 0.00 3.53
270 271 4.631813 GCCGTTGGATATCATCTACATTCC 59.368 45.833 4.83 0.00 0.00 3.01
271 272 4.631813 GGCCGTTGGATATCATCTACATTC 59.368 45.833 4.83 0.00 0.00 2.67
272 273 4.041567 TGGCCGTTGGATATCATCTACATT 59.958 41.667 4.83 0.00 0.00 2.71
273 274 3.582647 TGGCCGTTGGATATCATCTACAT 59.417 43.478 4.83 0.00 0.00 2.29
274 275 2.969262 TGGCCGTTGGATATCATCTACA 59.031 45.455 4.83 0.00 0.00 2.74
275 276 3.006967 ACTGGCCGTTGGATATCATCTAC 59.993 47.826 4.83 0.00 0.00 2.59
276 277 3.239449 ACTGGCCGTTGGATATCATCTA 58.761 45.455 4.83 0.00 0.00 1.98
277 278 2.050144 ACTGGCCGTTGGATATCATCT 58.950 47.619 4.83 0.00 0.00 2.90
278 279 2.550830 ACTGGCCGTTGGATATCATC 57.449 50.000 4.83 0.00 0.00 2.92
279 280 2.972713 ACTACTGGCCGTTGGATATCAT 59.027 45.455 4.83 0.00 0.00 2.45
280 281 2.102420 CACTACTGGCCGTTGGATATCA 59.898 50.000 4.83 0.00 0.00 2.15
281 282 2.755650 CACTACTGGCCGTTGGATATC 58.244 52.381 0.00 0.00 0.00 1.63
282 283 1.202651 GCACTACTGGCCGTTGGATAT 60.203 52.381 0.00 0.00 0.00 1.63
283 284 0.177141 GCACTACTGGCCGTTGGATA 59.823 55.000 0.00 0.00 0.00 2.59
284 285 1.078426 GCACTACTGGCCGTTGGAT 60.078 57.895 0.00 0.00 0.00 3.41
285 286 2.167398 GAGCACTACTGGCCGTTGGA 62.167 60.000 0.00 0.00 0.00 3.53
286 287 1.741770 GAGCACTACTGGCCGTTGG 60.742 63.158 0.00 0.00 0.00 3.77
287 288 2.094659 CGAGCACTACTGGCCGTTG 61.095 63.158 0.00 2.87 0.00 4.10
288 289 1.812686 TTCGAGCACTACTGGCCGTT 61.813 55.000 0.00 0.00 0.00 4.44
289 290 1.605058 ATTCGAGCACTACTGGCCGT 61.605 55.000 0.00 1.25 0.00 5.68
290 291 0.460284 AATTCGAGCACTACTGGCCG 60.460 55.000 0.00 0.00 0.00 6.13
291 292 1.398390 CAAATTCGAGCACTACTGGCC 59.602 52.381 0.00 0.00 0.00 5.36
292 293 1.202076 GCAAATTCGAGCACTACTGGC 60.202 52.381 0.00 0.00 0.00 4.85
293 294 1.398390 GGCAAATTCGAGCACTACTGG 59.602 52.381 0.00 0.00 0.00 4.00
294 295 2.076100 TGGCAAATTCGAGCACTACTG 58.924 47.619 0.00 0.00 0.00 2.74
295 296 2.472695 TGGCAAATTCGAGCACTACT 57.527 45.000 0.00 0.00 0.00 2.57
296 297 2.939103 AGATGGCAAATTCGAGCACTAC 59.061 45.455 0.00 0.00 0.00 2.73
297 298 3.266510 AGATGGCAAATTCGAGCACTA 57.733 42.857 0.00 0.00 0.00 2.74
298 299 2.119801 AGATGGCAAATTCGAGCACT 57.880 45.000 0.00 0.00 0.00 4.40
299 300 3.851105 GCATAGATGGCAAATTCGAGCAC 60.851 47.826 0.00 0.00 0.00 4.40
300 301 2.291465 GCATAGATGGCAAATTCGAGCA 59.709 45.455 0.00 0.00 0.00 4.26
301 302 2.291465 TGCATAGATGGCAAATTCGAGC 59.709 45.455 0.00 0.00 38.54 5.03
302 303 3.304257 GGTGCATAGATGGCAAATTCGAG 60.304 47.826 0.00 0.00 43.91 4.04
303 304 2.618241 GGTGCATAGATGGCAAATTCGA 59.382 45.455 0.00 0.00 43.91 3.71
304 305 2.358582 TGGTGCATAGATGGCAAATTCG 59.641 45.455 0.00 0.00 43.91 3.34
305 306 4.553323 GATGGTGCATAGATGGCAAATTC 58.447 43.478 0.00 0.00 43.91 2.17
306 307 3.005050 CGATGGTGCATAGATGGCAAATT 59.995 43.478 0.00 0.00 43.91 1.82
307 308 2.555325 CGATGGTGCATAGATGGCAAAT 59.445 45.455 0.00 0.00 43.91 2.32
308 309 1.948834 CGATGGTGCATAGATGGCAAA 59.051 47.619 0.00 0.00 43.91 3.68
309 310 1.596603 CGATGGTGCATAGATGGCAA 58.403 50.000 0.00 0.00 43.91 4.52
310 311 0.250424 CCGATGGTGCATAGATGGCA 60.250 55.000 0.00 0.00 39.32 4.92
311 312 0.035317 TCCGATGGTGCATAGATGGC 59.965 55.000 0.00 0.00 0.00 4.40
312 313 2.745821 CAATCCGATGGTGCATAGATGG 59.254 50.000 0.00 0.00 0.00 3.51
313 314 2.745821 CCAATCCGATGGTGCATAGATG 59.254 50.000 0.00 0.00 35.65 2.90
314 315 2.877300 GCCAATCCGATGGTGCATAGAT 60.877 50.000 0.00 0.00 42.75 1.98
315 316 1.543208 GCCAATCCGATGGTGCATAGA 60.543 52.381 0.00 0.00 42.75 1.98
316 317 0.877071 GCCAATCCGATGGTGCATAG 59.123 55.000 0.00 0.00 42.75 2.23
317 318 0.473755 AGCCAATCCGATGGTGCATA 59.526 50.000 0.00 0.00 42.75 3.14
318 319 0.396139 AAGCCAATCCGATGGTGCAT 60.396 50.000 0.00 0.00 42.75 3.96
319 320 1.001020 AAGCCAATCCGATGGTGCA 60.001 52.632 4.21 0.00 42.75 4.57
320 321 1.031571 TGAAGCCAATCCGATGGTGC 61.032 55.000 4.21 0.00 42.75 5.01
321 322 1.605710 GATGAAGCCAATCCGATGGTG 59.394 52.381 4.21 0.00 42.75 4.17
322 323 1.477558 GGATGAAGCCAATCCGATGGT 60.478 52.381 4.21 0.00 42.75 3.55
323 324 1.242076 GGATGAAGCCAATCCGATGG 58.758 55.000 0.00 0.00 43.70 3.51
324 325 1.971481 TGGATGAAGCCAATCCGATG 58.029 50.000 5.67 0.00 37.29 3.84
325 326 2.734755 TTGGATGAAGCCAATCCGAT 57.265 45.000 0.00 0.00 42.75 4.18
331 332 0.109532 TGGTCGTTGGATGAAGCCAA 59.890 50.000 0.00 0.00 45.28 4.52
332 333 0.327924 ATGGTCGTTGGATGAAGCCA 59.672 50.000 0.00 0.00 35.78 4.75
333 334 1.017387 GATGGTCGTTGGATGAAGCC 58.983 55.000 0.00 0.00 0.00 4.35
334 335 2.029838 AGATGGTCGTTGGATGAAGC 57.970 50.000 0.00 0.00 0.00 3.86
335 336 4.002982 TGAAAGATGGTCGTTGGATGAAG 58.997 43.478 0.00 0.00 0.00 3.02
336 337 4.014569 TGAAAGATGGTCGTTGGATGAA 57.985 40.909 0.00 0.00 0.00 2.57
337 338 3.694043 TGAAAGATGGTCGTTGGATGA 57.306 42.857 0.00 0.00 0.00 2.92
338 339 4.379813 CCTTTGAAAGATGGTCGTTGGATG 60.380 45.833 6.49 0.00 0.00 3.51
339 340 3.758554 CCTTTGAAAGATGGTCGTTGGAT 59.241 43.478 6.49 0.00 0.00 3.41
340 341 3.146066 CCTTTGAAAGATGGTCGTTGGA 58.854 45.455 6.49 0.00 0.00 3.53
341 342 2.884639 ACCTTTGAAAGATGGTCGTTGG 59.115 45.455 6.49 0.00 0.00 3.77
342 343 5.880054 ATACCTTTGAAAGATGGTCGTTG 57.120 39.130 6.49 0.00 34.33 4.10
343 344 5.121768 CGAATACCTTTGAAAGATGGTCGTT 59.878 40.000 6.49 0.00 34.33 3.85
344 345 4.630069 CGAATACCTTTGAAAGATGGTCGT 59.370 41.667 6.49 0.00 34.33 4.34
345 346 4.494199 GCGAATACCTTTGAAAGATGGTCG 60.494 45.833 6.49 10.73 34.33 4.79
346 347 4.394920 TGCGAATACCTTTGAAAGATGGTC 59.605 41.667 6.49 0.00 34.33 4.02
347 348 4.156008 GTGCGAATACCTTTGAAAGATGGT 59.844 41.667 6.49 0.00 36.66 3.55
348 349 4.155826 TGTGCGAATACCTTTGAAAGATGG 59.844 41.667 6.49 0.00 0.00 3.51
349 350 5.088739 GTGTGCGAATACCTTTGAAAGATG 58.911 41.667 6.49 0.00 0.00 2.90
350 351 5.003804 AGTGTGCGAATACCTTTGAAAGAT 58.996 37.500 6.49 0.00 0.00 2.40
351 352 4.385825 AGTGTGCGAATACCTTTGAAAGA 58.614 39.130 6.49 0.00 0.00 2.52
352 353 4.749245 AGTGTGCGAATACCTTTGAAAG 57.251 40.909 0.00 0.00 0.00 2.62
353 354 7.908827 TTATAGTGTGCGAATACCTTTGAAA 57.091 32.000 0.00 0.00 0.00 2.69
354 355 7.065324 CCTTTATAGTGTGCGAATACCTTTGAA 59.935 37.037 0.00 0.00 0.00 2.69
355 356 6.537301 CCTTTATAGTGTGCGAATACCTTTGA 59.463 38.462 0.00 0.00 0.00 2.69
356 357 6.238374 CCCTTTATAGTGTGCGAATACCTTTG 60.238 42.308 0.00 0.00 0.00 2.77
357 358 5.820947 CCCTTTATAGTGTGCGAATACCTTT 59.179 40.000 0.00 0.00 0.00 3.11
358 359 5.365619 CCCTTTATAGTGTGCGAATACCTT 58.634 41.667 0.00 0.00 0.00 3.50
359 360 4.202326 CCCCTTTATAGTGTGCGAATACCT 60.202 45.833 0.00 0.00 0.00 3.08
360 361 4.062991 CCCCTTTATAGTGTGCGAATACC 58.937 47.826 0.00 0.00 0.00 2.73
361 362 4.700700 ACCCCTTTATAGTGTGCGAATAC 58.299 43.478 0.00 0.00 0.00 1.89
362 363 6.675413 ATACCCCTTTATAGTGTGCGAATA 57.325 37.500 0.00 0.00 0.00 1.75
363 364 3.926058 ACCCCTTTATAGTGTGCGAAT 57.074 42.857 0.00 0.00 0.00 3.34
364 365 5.834742 TCTATACCCCTTTATAGTGTGCGAA 59.165 40.000 0.00 0.00 34.72 4.70
365 366 5.387788 TCTATACCCCTTTATAGTGTGCGA 58.612 41.667 0.00 0.00 34.72 5.10
366 367 5.717078 TCTATACCCCTTTATAGTGTGCG 57.283 43.478 0.00 0.00 34.72 5.34
367 368 8.813951 AGTAATCTATACCCCTTTATAGTGTGC 58.186 37.037 0.00 0.00 34.72 4.57
369 370 9.893975 ACAGTAATCTATACCCCTTTATAGTGT 57.106 33.333 0.00 0.00 34.72 3.55
371 372 9.893975 ACACAGTAATCTATACCCCTTTATAGT 57.106 33.333 0.00 0.00 34.72 2.12
374 375 7.937394 GCAACACAGTAATCTATACCCCTTTAT 59.063 37.037 0.00 0.00 0.00 1.40
375 376 7.277396 GCAACACAGTAATCTATACCCCTTTA 58.723 38.462 0.00 0.00 0.00 1.85
376 377 6.120220 GCAACACAGTAATCTATACCCCTTT 58.880 40.000 0.00 0.00 0.00 3.11
377 378 5.397559 GGCAACACAGTAATCTATACCCCTT 60.398 44.000 0.00 0.00 0.00 3.95
378 379 4.102681 GGCAACACAGTAATCTATACCCCT 59.897 45.833 0.00 0.00 0.00 4.79
379 380 4.141574 TGGCAACACAGTAATCTATACCCC 60.142 45.833 0.00 0.00 46.17 4.95
380 381 5.031066 TGGCAACACAGTAATCTATACCC 57.969 43.478 0.00 0.00 46.17 3.69
396 397 7.100458 ACTAAGATACATGGAAATTGGCAAC 57.900 36.000 0.00 0.00 0.00 4.17
425 426 7.053316 TCCATCATTGAACAACAAAGATTGT 57.947 32.000 0.00 0.00 41.96 2.71
427 428 7.149973 CACTCCATCATTGAACAACAAAGATT 58.850 34.615 0.00 0.00 41.96 2.40
449 450 0.178953 AATGGAAAGGCAGGCACACT 60.179 50.000 0.00 0.00 0.00 3.55
450 451 0.244721 GAATGGAAAGGCAGGCACAC 59.755 55.000 0.00 0.00 0.00 3.82
458 459 2.426842 AGCTAGTGGAATGGAAAGGC 57.573 50.000 0.00 0.00 0.00 4.35
481 482 4.232091 AGATTACCCCGATCTGTTGGTAT 58.768 43.478 0.00 0.00 33.57 2.73
516 517 3.289836 TGCATCCATGATTACCAAGTGG 58.710 45.455 0.00 0.00 42.17 4.00
517 518 3.317149 CCTGCATCCATGATTACCAAGTG 59.683 47.826 0.00 0.00 0.00 3.16
518 519 3.202818 TCCTGCATCCATGATTACCAAGT 59.797 43.478 0.00 0.00 0.00 3.16
519 520 3.824133 TCCTGCATCCATGATTACCAAG 58.176 45.455 0.00 0.00 0.00 3.61
520 521 3.949586 TCCTGCATCCATGATTACCAA 57.050 42.857 0.00 0.00 0.00 3.67
521 522 3.949586 TTCCTGCATCCATGATTACCA 57.050 42.857 0.00 0.00 0.00 3.25
594 599 4.765281 TTGGCGTCGACTTAATTAATCG 57.235 40.909 14.70 16.97 37.20 3.34
596 601 6.920569 AGATTTGGCGTCGACTTAATTAAT 57.079 33.333 14.70 5.71 0.00 1.40
607 612 2.731976 GGATAAGCTAGATTTGGCGTCG 59.268 50.000 0.00 0.00 35.69 5.12
616 621 7.554476 GTGAAAAACAGGAAGGATAAGCTAGAT 59.446 37.037 0.00 0.00 0.00 1.98
676 1638 8.283291 AGCAATTTATTTACTAGCACGAATAGC 58.717 33.333 0.00 0.00 0.00 2.97
682 1645 6.119144 ACCAGCAATTTATTTACTAGCACG 57.881 37.500 0.00 0.00 0.00 5.34
687 1650 8.704849 ATGCCATACCAGCAATTTATTTACTA 57.295 30.769 0.00 0.00 44.83 1.82
688 1651 7.601705 ATGCCATACCAGCAATTTATTTACT 57.398 32.000 0.00 0.00 44.83 2.24
689 1652 8.661352 AAATGCCATACCAGCAATTTATTTAC 57.339 30.769 0.00 0.00 44.83 2.01
736 1699 3.389329 AGATATGCTGATCCAAACCGACT 59.611 43.478 0.00 0.00 0.00 4.18
737 1700 3.733337 AGATATGCTGATCCAAACCGAC 58.267 45.455 0.00 0.00 0.00 4.79
740 1703 6.705863 AAAAGAGATATGCTGATCCAAACC 57.294 37.500 0.00 0.00 0.00 3.27
765 1728 7.542130 TCTTATAAAAACGAACGAAGGGAGTAC 59.458 37.037 0.14 0.00 0.00 2.73
766 1729 7.542130 GTCTTATAAAAACGAACGAAGGGAGTA 59.458 37.037 0.14 0.00 0.00 2.59
767 1730 6.367149 GTCTTATAAAAACGAACGAAGGGAGT 59.633 38.462 0.14 0.00 0.00 3.85
768 1731 6.453396 CGTCTTATAAAAACGAACGAAGGGAG 60.453 42.308 12.44 0.00 38.65 4.30
769 1732 5.345741 CGTCTTATAAAAACGAACGAAGGGA 59.654 40.000 12.44 0.00 38.65 4.20
770 1733 5.119125 ACGTCTTATAAAAACGAACGAAGGG 59.881 40.000 20.71 0.00 39.59 3.95
771 1734 6.144577 ACGTCTTATAAAAACGAACGAAGG 57.855 37.500 20.71 0.00 39.59 3.46
772 1735 7.788846 TGAAACGTCTTATAAAAACGAACGAAG 59.211 33.333 20.71 3.69 39.59 3.79
773 1736 7.616673 TGAAACGTCTTATAAAAACGAACGAA 58.383 30.769 20.71 5.61 39.59 3.85
774 1737 7.159437 TGAAACGTCTTATAAAAACGAACGA 57.841 32.000 20.71 5.40 39.59 3.85
775 1738 7.262789 GTCTGAAACGTCTTATAAAAACGAACG 59.737 37.037 20.71 10.85 39.59 3.95
776 1739 8.057742 TGTCTGAAACGTCTTATAAAAACGAAC 58.942 33.333 20.71 13.42 39.59 3.95
777 1740 8.129161 TGTCTGAAACGTCTTATAAAAACGAA 57.871 30.769 20.71 7.62 39.59 3.85
778 1741 7.568134 GCTGTCTGAAACGTCTTATAAAAACGA 60.568 37.037 20.71 0.00 39.59 3.85
779 1742 6.515340 GCTGTCTGAAACGTCTTATAAAAACG 59.485 38.462 15.01 15.01 41.93 3.60
780 1743 7.530861 CAGCTGTCTGAAACGTCTTATAAAAAC 59.469 37.037 5.25 0.00 42.95 2.43
781 1744 7.439955 TCAGCTGTCTGAAACGTCTTATAAAAA 59.560 33.333 14.67 0.00 45.69 1.94
782 1745 6.926826 TCAGCTGTCTGAAACGTCTTATAAAA 59.073 34.615 14.67 0.00 45.69 1.52
783 1746 6.452242 TCAGCTGTCTGAAACGTCTTATAAA 58.548 36.000 14.67 0.00 45.69 1.40
784 1747 6.020971 TCAGCTGTCTGAAACGTCTTATAA 57.979 37.500 14.67 0.00 45.69 0.98
785 1748 5.638596 TCAGCTGTCTGAAACGTCTTATA 57.361 39.130 14.67 0.00 45.69 0.98
786 1749 4.521130 TCAGCTGTCTGAAACGTCTTAT 57.479 40.909 14.67 0.00 45.69 1.73
788 1751 2.890808 TCAGCTGTCTGAAACGTCTT 57.109 45.000 14.67 0.00 45.69 3.01
796 1759 5.023533 ACAGTTTAAACTCAGCTGTCTGA 57.976 39.130 18.00 0.00 46.43 3.27
797 1760 5.741388 AACAGTTTAAACTCAGCTGTCTG 57.259 39.130 18.00 7.30 39.19 3.51
798 1761 7.048512 ACTAAACAGTTTAAACTCAGCTGTCT 58.951 34.615 18.00 3.58 39.19 3.41
799 1762 7.247929 ACTAAACAGTTTAAACTCAGCTGTC 57.752 36.000 18.00 0.00 39.19 3.51
800 1763 7.767198 TGTACTAAACAGTTTAAACTCAGCTGT 59.233 33.333 18.00 15.26 41.51 4.40
801 1764 8.062448 GTGTACTAAACAGTTTAAACTCAGCTG 58.938 37.037 18.00 7.63 39.29 4.24
802 1765 7.985752 AGTGTACTAAACAGTTTAAACTCAGCT 59.014 33.333 18.00 6.03 38.70 4.24
803 1766 8.062448 CAGTGTACTAAACAGTTTAAACTCAGC 58.938 37.037 18.00 6.07 39.88 4.26
804 1767 9.095065 ACAGTGTACTAAACAGTTTAAACTCAG 57.905 33.333 18.00 14.01 39.88 3.35
805 1768 9.090692 GACAGTGTACTAAACAGTTTAAACTCA 57.909 33.333 18.00 7.81 39.88 3.41
806 1769 9.310716 AGACAGTGTACTAAACAGTTTAAACTC 57.689 33.333 18.00 5.30 39.88 3.01
807 1770 9.095065 CAGACAGTGTACTAAACAGTTTAAACT 57.905 33.333 15.22 15.22 39.88 2.66
808 1771 9.090692 TCAGACAGTGTACTAAACAGTTTAAAC 57.909 33.333 10.47 10.47 39.88 2.01
809 1772 9.656040 TTCAGACAGTGTACTAAACAGTTTAAA 57.344 29.630 7.18 0.00 39.88 1.52
810 1773 9.826574 ATTCAGACAGTGTACTAAACAGTTTAA 57.173 29.630 7.18 0.00 39.88 1.52
811 1774 9.826574 AATTCAGACAGTGTACTAAACAGTTTA 57.173 29.630 5.61 5.61 39.88 2.01
812 1775 8.732746 AATTCAGACAGTGTACTAAACAGTTT 57.267 30.769 3.49 3.49 39.88 2.66
813 1776 8.732746 AAATTCAGACAGTGTACTAAACAGTT 57.267 30.769 0.00 0.00 39.88 3.16
814 1777 9.257651 GTAAATTCAGACAGTGTACTAAACAGT 57.742 33.333 0.00 0.00 42.76 3.55
815 1778 9.477484 AGTAAATTCAGACAGTGTACTAAACAG 57.523 33.333 0.00 0.00 39.29 3.16
821 1784 8.975439 CGTTTTAGTAAATTCAGACAGTGTACT 58.025 33.333 0.00 0.00 0.00 2.73
822 1785 8.758715 ACGTTTTAGTAAATTCAGACAGTGTAC 58.241 33.333 0.00 0.00 0.00 2.90
823 1786 8.876275 ACGTTTTAGTAAATTCAGACAGTGTA 57.124 30.769 0.00 0.00 0.00 2.90
824 1787 7.709613 AGACGTTTTAGTAAATTCAGACAGTGT 59.290 33.333 0.00 0.00 0.00 3.55
825 1788 8.073355 AGACGTTTTAGTAAATTCAGACAGTG 57.927 34.615 0.00 0.00 0.00 3.66
826 1789 8.658499 AAGACGTTTTAGTAAATTCAGACAGT 57.342 30.769 0.00 0.00 0.00 3.55
842 1805 9.813446 CCCTCTGTTACTTATATAAGACGTTTT 57.187 33.333 25.83 7.69 37.08 2.43
843 1806 9.193806 TCCCTCTGTTACTTATATAAGACGTTT 57.806 33.333 25.83 8.33 37.08 3.60
844 1807 8.757982 TCCCTCTGTTACTTATATAAGACGTT 57.242 34.615 25.83 8.67 37.08 3.99
845 1808 7.997803 ACTCCCTCTGTTACTTATATAAGACGT 59.002 37.037 25.83 9.73 37.08 4.34
846 1809 8.393671 ACTCCCTCTGTTACTTATATAAGACG 57.606 38.462 25.83 12.23 37.08 4.18
850 1813 9.032624 GGCATACTCCCTCTGTTACTTATATAA 57.967 37.037 0.00 0.00 0.00 0.98
851 1814 8.399529 AGGCATACTCCCTCTGTTACTTATATA 58.600 37.037 0.00 0.00 0.00 0.86
852 1815 7.179338 CAGGCATACTCCCTCTGTTACTTATAT 59.821 40.741 0.00 0.00 0.00 0.86
853 1816 6.493802 CAGGCATACTCCCTCTGTTACTTATA 59.506 42.308 0.00 0.00 0.00 0.98
854 1817 5.305644 CAGGCATACTCCCTCTGTTACTTAT 59.694 44.000 0.00 0.00 0.00 1.73
855 1818 4.649674 CAGGCATACTCCCTCTGTTACTTA 59.350 45.833 0.00 0.00 0.00 2.24
856 1819 3.452627 CAGGCATACTCCCTCTGTTACTT 59.547 47.826 0.00 0.00 0.00 2.24
857 1820 3.034635 CAGGCATACTCCCTCTGTTACT 58.965 50.000 0.00 0.00 0.00 2.24
858 1821 3.031736 TCAGGCATACTCCCTCTGTTAC 58.968 50.000 0.00 0.00 0.00 2.50
859 1822 3.398318 TCAGGCATACTCCCTCTGTTA 57.602 47.619 0.00 0.00 0.00 2.41
860 1823 2.254152 TCAGGCATACTCCCTCTGTT 57.746 50.000 0.00 0.00 0.00 3.16
861 1824 2.324541 GATCAGGCATACTCCCTCTGT 58.675 52.381 0.00 0.00 0.00 3.41
862 1825 2.323599 TGATCAGGCATACTCCCTCTG 58.676 52.381 0.00 0.00 0.00 3.35
863 1826 2.783379 TGATCAGGCATACTCCCTCT 57.217 50.000 0.00 0.00 0.00 3.69
864 1827 3.845781 TTTGATCAGGCATACTCCCTC 57.154 47.619 0.00 0.00 0.00 4.30
865 1828 3.682718 CGTTTTGATCAGGCATACTCCCT 60.683 47.826 0.00 0.00 0.00 4.20
866 1829 2.614057 CGTTTTGATCAGGCATACTCCC 59.386 50.000 0.00 0.00 0.00 4.30
867 1830 2.614057 CCGTTTTGATCAGGCATACTCC 59.386 50.000 0.00 0.00 0.00 3.85
868 1831 2.614057 CCCGTTTTGATCAGGCATACTC 59.386 50.000 0.00 0.00 0.00 2.59
869 1832 2.643551 CCCGTTTTGATCAGGCATACT 58.356 47.619 0.00 0.00 0.00 2.12
887 1850 3.093057 AGATAGAGATATGGTGACGCCC 58.907 50.000 1.74 0.00 36.04 6.13
889 1852 4.013728 AGGAGATAGAGATATGGTGACGC 58.986 47.826 0.00 0.00 0.00 5.19
910 1873 3.168963 CGAAGAAGTGATGCAATGCAAG 58.831 45.455 13.45 0.00 43.62 4.01
935 1898 1.074248 GGGTTTGCTTCGGGGAGAA 59.926 57.895 0.00 0.00 37.31 2.87
937 1900 0.611896 AATGGGTTTGCTTCGGGGAG 60.612 55.000 0.00 0.00 0.00 4.30
939 1902 0.611896 AGAATGGGTTTGCTTCGGGG 60.612 55.000 0.00 0.00 0.00 5.73
940 1903 0.527565 CAGAATGGGTTTGCTTCGGG 59.472 55.000 0.00 0.00 0.00 5.14
957 1937 3.125200 CTCAGTGTGAGCAGAGCAG 57.875 57.895 0.00 0.00 37.72 4.24
997 1977 1.153168 GTGACGGTGGATCCATGGG 60.153 63.158 19.62 12.57 35.57 4.00
1014 1994 0.036388 GACCGTGATCATGTGGTGGT 60.036 55.000 18.52 10.90 34.12 4.16
1017 2003 1.218047 CCGACCGTGATCATGTGGT 59.782 57.895 13.81 14.36 37.44 4.16
1020 2006 0.811219 CATGCCGACCGTGATCATGT 60.811 55.000 13.81 7.32 32.26 3.21
1023 2009 1.141665 CTCATGCCGACCGTGATCA 59.858 57.895 0.00 0.00 38.72 2.92
1029 2015 2.125552 TCTTGCTCATGCCGACCG 60.126 61.111 0.00 0.00 38.71 4.79
1034 2020 1.267261 GATGATGCTCTTGCTCATGCC 59.733 52.381 0.00 0.00 37.27 4.40
1278 2276 2.203070 CATAGGCCCGTGAGCACC 60.203 66.667 0.00 0.00 0.00 5.01
1359 2357 3.503363 GTGGCCATGAGCAGCGTC 61.503 66.667 9.72 0.00 46.50 5.19
1704 2702 3.127352 GAGCACGTAGGCGGAGAGG 62.127 68.421 0.00 0.00 43.45 3.69
2235 3233 4.043168 ACGTTCAGCGGGAAGTTG 57.957 55.556 0.00 0.00 46.52 3.16
2423 3421 0.602638 GATCACCACGAGCAACACCA 60.603 55.000 0.00 0.00 0.00 4.17
2428 3426 2.809174 CGCGATCACCACGAGCAA 60.809 61.111 0.00 0.00 0.00 3.91
2505 3503 1.541889 GGCTCAGCATTCCGATCATCA 60.542 52.381 0.00 0.00 0.00 3.07
2508 3506 1.146930 GGGCTCAGCATTCCGATCA 59.853 57.895 0.00 0.00 0.00 2.92
2511 3509 1.078214 CTTGGGCTCAGCATTCCGA 60.078 57.895 0.00 0.00 0.00 4.55
2513 3511 0.750911 CTCCTTGGGCTCAGCATTCC 60.751 60.000 0.00 0.00 0.00 3.01
2525 3523 1.586154 ATTTTGCGACGCCTCCTTGG 61.586 55.000 18.69 0.00 39.35 3.61
2538 3536 1.190763 CAAACGTCAGCAGCATTTTGC 59.809 47.619 0.00 0.00 45.46 3.68
2562 3563 9.909644 TTCAGACTACTTAATGACTGAAGTTAC 57.090 33.333 0.00 0.00 38.73 2.50
2595 3599 6.280643 TCATGTAGTATGTACATTGCACTCC 58.719 40.000 14.77 3.38 36.13 3.85
2630 3640 6.091169 CGATTTCAAAACAAAATCTCCATGGG 59.909 38.462 13.02 2.57 39.76 4.00
2631 3641 6.091169 CCGATTTCAAAACAAAATCTCCATGG 59.909 38.462 4.97 4.97 39.76 3.66
2632 3642 6.401367 GCCGATTTCAAAACAAAATCTCCATG 60.401 38.462 6.92 0.00 39.76 3.66
2633 3643 5.639082 GCCGATTTCAAAACAAAATCTCCAT 59.361 36.000 6.92 0.00 39.76 3.41
2657 3667 1.001181 CCCTTGTGGCAATTGGTTCTG 59.999 52.381 7.72 0.00 0.00 3.02
2662 3672 0.542702 ACCTCCCTTGTGGCAATTGG 60.543 55.000 7.72 0.00 0.00 3.16
2739 3749 5.133941 ACTCGATTAGATTAGAGCACTGGA 58.866 41.667 0.00 0.00 34.31 3.86
2826 3850 5.879223 ACTCATCACCTTGCTAATCTTCTTG 59.121 40.000 0.00 0.00 0.00 3.02
2985 4815 8.906867 CAAACAGGTGACCTAAAATCATGATAT 58.093 33.333 9.04 3.89 29.64 1.63
2989 4819 5.047802 AGCAAACAGGTGACCTAAAATCATG 60.048 40.000 2.59 0.00 29.64 3.07
2992 4822 5.453567 AAGCAAACAGGTGACCTAAAATC 57.546 39.130 2.59 0.00 29.64 2.17
3000 4830 5.858581 GTGATGAAATAAGCAAACAGGTGAC 59.141 40.000 0.00 0.00 0.00 3.67
3005 4835 6.919662 ACTTGTGTGATGAAATAAGCAAACAG 59.080 34.615 0.00 0.00 30.85 3.16
3011 4841 5.691305 TGCAAACTTGTGTGATGAAATAAGC 59.309 36.000 0.00 0.00 0.00 3.09
3087 4917 5.163622 GCTGACACCATATTTTGCACACTAT 60.164 40.000 0.00 0.00 0.00 2.12
3111 4948 4.116961 TCACTTTGTTGAACGTACTCCAG 58.883 43.478 0.00 0.00 0.00 3.86
3117 4954 8.132362 AGCAAAATATTCACTTTGTTGAACGTA 58.868 29.630 0.00 0.00 38.31 3.57
3136 4973 1.935799 TGGTGGCATGGTAGCAAAAT 58.064 45.000 0.00 0.00 35.83 1.82
3144 4982 3.711863 AGTGAAATTATGGTGGCATGGT 58.288 40.909 0.00 0.00 0.00 3.55
3157 4995 8.103305 ACATCTGTTCATGTACCTAGTGAAATT 58.897 33.333 0.00 0.00 35.10 1.82
3181 5020 1.315981 TTGTCTTTGCCGTGCCAACA 61.316 50.000 0.00 0.00 0.00 3.33
3239 5081 3.698289 AGTACTACTGTCTTAGCAGGCA 58.302 45.455 0.00 0.00 40.59 4.75
3240 5082 4.639310 TGTAGTACTACTGTCTTAGCAGGC 59.361 45.833 28.56 3.05 40.59 4.85
3241 5083 5.220892 GCTGTAGTACTACTGTCTTAGCAGG 60.221 48.000 29.54 11.23 40.59 4.85
3242 5084 5.587043 AGCTGTAGTACTACTGTCTTAGCAG 59.413 44.000 28.42 18.70 41.92 4.24
3371 5214 8.660373 GTTTTTAGAATCGTGTGAATCAGAGAT 58.340 33.333 0.00 0.00 0.00 2.75
3375 5218 5.504755 GCGTTTTTAGAATCGTGTGAATCAG 59.495 40.000 0.00 0.00 32.11 2.90
3382 5225 3.395639 TCCTGCGTTTTTAGAATCGTGT 58.604 40.909 0.00 0.00 32.11 4.49
3413 5256 9.451002 TTGGCATGACATTTCAATCATTTATTT 57.549 25.926 0.00 0.00 33.18 1.40
3414 5257 9.621629 ATTGGCATGACATTTCAATCATTTATT 57.378 25.926 0.00 0.00 33.18 1.40
3415 5258 9.621629 AATTGGCATGACATTTCAATCATTTAT 57.378 25.926 0.00 0.00 33.18 1.40
3416 5259 9.451002 AAATTGGCATGACATTTCAATCATTTA 57.549 25.926 0.00 0.00 33.18 1.40
3419 5262 7.106890 TGAAATTGGCATGACATTTCAATCAT 58.893 30.769 24.65 4.86 38.01 2.45
3449 5295 3.326747 TCAAACAAACCAAAAACCCGTG 58.673 40.909 0.00 0.00 0.00 4.94
3452 5298 4.156739 TGCAATCAAACAAACCAAAAACCC 59.843 37.500 0.00 0.00 0.00 4.11
3453 5299 5.302357 TGCAATCAAACAAACCAAAAACC 57.698 34.783 0.00 0.00 0.00 3.27
3459 5306 7.890515 TGTCTATTATGCAATCAAACAAACCA 58.109 30.769 0.00 0.00 0.00 3.67
3483 5330 8.190784 ACCTCTTTGAAAGTATCAGTTGTTTTG 58.809 33.333 4.68 0.00 39.77 2.44
3491 5338 7.736447 ACTCAAACCTCTTTGAAAGTATCAG 57.264 36.000 4.68 0.00 44.18 2.90
3531 5378 6.348050 GCTTGTTTGATTCATAGGATCGGATC 60.348 42.308 9.54 9.54 0.00 3.36
3532 5379 5.471456 GCTTGTTTGATTCATAGGATCGGAT 59.529 40.000 0.00 0.00 0.00 4.18
3533 5380 4.816385 GCTTGTTTGATTCATAGGATCGGA 59.184 41.667 0.00 0.00 0.00 4.55
3534 5381 4.576053 TGCTTGTTTGATTCATAGGATCGG 59.424 41.667 0.00 0.00 0.00 4.18
3535 5382 5.739752 TGCTTGTTTGATTCATAGGATCG 57.260 39.130 0.00 0.00 0.00 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.