Multiple sequence alignment - TraesCS4A01G314000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G314000 chr4A 100.000 2915 0 0 1 2915 604596687 604593773 0.000000e+00 5384
1 TraesCS4A01G314000 chr4A 90.441 136 12 1 563 698 223857835 223857969 8.300000e-41 178
2 TraesCS4A01G314000 chr5B 90.338 1035 84 10 689 1714 710592846 710593873 0.000000e+00 1343
3 TraesCS4A01G314000 chr5B 94.172 429 20 5 1 427 693021780 693021355 0.000000e+00 649
4 TraesCS4A01G314000 chr5B 88.845 502 38 11 1713 2201 710594047 710594543 4.160000e-168 601
5 TraesCS4A01G314000 chr5B 83.058 667 87 19 2258 2903 710594662 710595323 1.510000e-162 582
6 TraesCS4A01G314000 chr5B 72.337 723 153 34 1025 1714 711858982 711858274 1.780000e-42 183
7 TraesCS4A01G314000 chr5B 85.484 124 12 5 427 544 710592944 710593067 1.100000e-24 124
8 TraesCS4A01G314000 chr3A 96.270 429 13 3 1 428 663363771 663363345 0.000000e+00 701
9 TraesCS4A01G314000 chr3A 73.029 723 151 31 1025 1714 663441791 663441080 6.330000e-52 215
10 TraesCS4A01G314000 chr6A 93.897 426 20 5 1 424 87498220 87497799 3.170000e-179 638
11 TraesCS4A01G314000 chr6A 93.496 123 7 1 568 690 575302866 575302987 6.420000e-42 182
12 TraesCS4A01G314000 chr5D 93.488 430 22 5 1 427 433994825 433994399 4.100000e-178 634
13 TraesCS4A01G314000 chr5A 93.519 432 15 8 1 425 17564926 17565351 5.300000e-177 630
14 TraesCS4A01G314000 chr5A 93.458 428 22 5 1 426 556585838 556586261 5.300000e-177 630
15 TraesCS4A01G314000 chr5A 92.807 431 26 5 1 429 201396123 201395696 1.150000e-173 619
16 TraesCS4A01G314000 chr7D 92.396 434 29 3 1 433 625617957 625617527 1.480000e-172 616
17 TraesCS4A01G314000 chr7D 73.684 513 111 19 1216 1714 624769341 624769843 8.300000e-41 178
18 TraesCS4A01G314000 chr2A 91.723 447 27 8 1 441 120227195 120226753 1.920000e-171 612
19 TraesCS4A01G314000 chr3B 91.925 161 11 2 1740 1899 822877541 822877382 1.050000e-54 224
20 TraesCS4A01G314000 chr3B 81.851 281 33 13 1893 2158 822875890 822875613 1.360000e-53 220
21 TraesCS4A01G314000 chr3B 73.018 719 147 34 1031 1714 700073309 700072603 2.940000e-50 209
22 TraesCS4A01G314000 chr3B 90.441 136 9 2 2249 2380 822875405 822875270 2.990000e-40 176
23 TraesCS4A01G314000 chr3B 89.855 138 11 3 560 695 492751501 492751365 1.070000e-39 174
24 TraesCS4A01G314000 chr6D 91.852 135 11 0 557 691 4646683 4646817 3.830000e-44 189
25 TraesCS4A01G314000 chr2B 92.248 129 9 1 562 690 632646078 632645951 6.420000e-42 182
26 TraesCS4A01G314000 chr2B 92.248 129 7 2 563 691 104072961 104073086 2.310000e-41 180
27 TraesCS4A01G314000 chr7B 92.188 128 9 1 563 690 85813908 85814034 2.310000e-41 180
28 TraesCS4A01G314000 chr7B 90.370 135 11 2 559 693 88278775 88278643 2.990000e-40 176
29 TraesCS4A01G314000 chr7B 87.248 149 15 4 563 710 700398250 700398105 1.800000e-37 167


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G314000 chr4A 604593773 604596687 2914 True 5384.000000 5384 100.000000 1 2915 1 chr4A.!!$R1 2914
1 TraesCS4A01G314000 chr5B 710592846 710595323 2477 False 662.500000 1343 86.931250 427 2903 4 chr5B.!!$F1 2476
2 TraesCS4A01G314000 chr3A 663441080 663441791 711 True 215.000000 215 73.029000 1025 1714 1 chr3A.!!$R2 689
3 TraesCS4A01G314000 chr3B 700072603 700073309 706 True 209.000000 209 73.018000 1031 1714 1 chr3B.!!$R2 683
4 TraesCS4A01G314000 chr3B 822875270 822877541 2271 True 206.666667 224 88.072333 1740 2380 3 chr3B.!!$R3 640

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
249 250 0.035458 ACAGTAGAGCAGGTGTTGGC 59.965 55.0 0.0 0.0 0.00 4.52 F
295 296 0.036306 TGGCCGAAAAGTCCCTCTTC 59.964 55.0 0.0 0.0 35.02 2.87 F
480 481 0.108615 ACTGCACTACTCATGGACGC 60.109 55.0 0.0 0.0 0.00 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1214 1241 0.179000 CTCCATAGCCGCTTTCACCT 59.821 55.0 0.0 0.0 0.0 4.00 R
1221 1248 0.179000 CCAGTTTCTCCATAGCCGCT 59.821 55.0 0.0 0.0 0.0 5.52 R
2291 4125 0.182299 GGGATGAAAGGGCAGGAGAG 59.818 60.0 0.0 0.0 0.0 3.20 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.965824 ATAAACAAATTCACAAAGAACCAGTAG 57.034 29.630 0.00 0.00 39.49 2.57
27 28 5.831997 ACAAATTCACAAAGAACCAGTAGC 58.168 37.500 0.00 0.00 39.49 3.58
28 29 5.359576 ACAAATTCACAAAGAACCAGTAGCA 59.640 36.000 0.00 0.00 39.49 3.49
29 30 6.127479 ACAAATTCACAAAGAACCAGTAGCAA 60.127 34.615 0.00 0.00 39.49 3.91
30 31 6.463995 AATTCACAAAGAACCAGTAGCAAA 57.536 33.333 0.00 0.00 39.49 3.68
31 32 5.906113 TTCACAAAGAACCAGTAGCAAAA 57.094 34.783 0.00 0.00 0.00 2.44
32 33 5.906113 TCACAAAGAACCAGTAGCAAAAA 57.094 34.783 0.00 0.00 0.00 1.94
33 34 5.890334 TCACAAAGAACCAGTAGCAAAAAG 58.110 37.500 0.00 0.00 0.00 2.27
34 35 5.650266 TCACAAAGAACCAGTAGCAAAAAGA 59.350 36.000 0.00 0.00 0.00 2.52
35 36 6.151985 TCACAAAGAACCAGTAGCAAAAAGAA 59.848 34.615 0.00 0.00 0.00 2.52
36 37 6.980397 CACAAAGAACCAGTAGCAAAAAGAAT 59.020 34.615 0.00 0.00 0.00 2.40
37 38 7.168135 CACAAAGAACCAGTAGCAAAAAGAATC 59.832 37.037 0.00 0.00 0.00 2.52
38 39 6.959639 AAGAACCAGTAGCAAAAAGAATCA 57.040 33.333 0.00 0.00 0.00 2.57
39 40 7.530426 AAGAACCAGTAGCAAAAAGAATCAT 57.470 32.000 0.00 0.00 0.00 2.45
40 41 7.150783 AGAACCAGTAGCAAAAAGAATCATC 57.849 36.000 0.00 0.00 0.00 2.92
41 42 6.944862 AGAACCAGTAGCAAAAAGAATCATCT 59.055 34.615 0.00 0.00 37.57 2.90
43 44 8.635765 AACCAGTAGCAAAAAGAATCATCTTA 57.364 30.769 0.00 0.00 45.19 2.10
44 45 8.635765 ACCAGTAGCAAAAAGAATCATCTTAA 57.364 30.769 0.00 0.00 45.19 1.85
45 46 9.077885 ACCAGTAGCAAAAAGAATCATCTTAAA 57.922 29.630 0.00 0.00 45.19 1.52
46 47 9.912634 CCAGTAGCAAAAAGAATCATCTTAAAA 57.087 29.630 0.00 0.00 45.19 1.52
75 76 8.910351 ACTCCTAACTCAAATTATAGGCAATC 57.090 34.615 0.00 0.00 35.84 2.67
76 77 8.718656 ACTCCTAACTCAAATTATAGGCAATCT 58.281 33.333 0.00 0.00 35.84 2.40
90 91 9.845740 TTATAGGCAATCTAGTTATTTGAGCAA 57.154 29.630 0.00 0.00 0.00 3.91
91 92 8.752005 ATAGGCAATCTAGTTATTTGAGCAAA 57.248 30.769 0.00 0.00 34.46 3.68
92 93 7.651027 AGGCAATCTAGTTATTTGAGCAAAT 57.349 32.000 12.51 12.51 42.95 2.32
93 94 8.071177 AGGCAATCTAGTTATTTGAGCAAATT 57.929 30.769 13.05 0.00 40.99 1.82
94 95 8.193438 AGGCAATCTAGTTATTTGAGCAAATTC 58.807 33.333 13.05 7.84 40.99 2.17
95 96 7.975616 GGCAATCTAGTTATTTGAGCAAATTCA 59.024 33.333 13.05 0.00 40.99 2.57
96 97 9.525409 GCAATCTAGTTATTTGAGCAAATTCAT 57.475 29.630 13.05 3.58 40.99 2.57
137 138 9.787532 TCAAACTTTCAAATCTAGTCAAACTTG 57.212 29.630 0.00 0.00 0.00 3.16
138 139 9.787532 CAAACTTTCAAATCTAGTCAAACTTGA 57.212 29.630 0.00 0.00 34.71 3.02
246 247 7.399245 TTTTTAAAACAGTAGAGCAGGTGTT 57.601 32.000 0.00 0.00 34.60 3.32
247 248 6.371809 TTTAAAACAGTAGAGCAGGTGTTG 57.628 37.500 0.00 0.00 33.45 3.33
248 249 2.550830 AACAGTAGAGCAGGTGTTGG 57.449 50.000 0.00 0.00 31.94 3.77
249 250 0.035458 ACAGTAGAGCAGGTGTTGGC 59.965 55.000 0.00 0.00 0.00 4.52
250 251 0.674895 CAGTAGAGCAGGTGTTGGCC 60.675 60.000 0.00 0.00 0.00 5.36
251 252 1.741770 GTAGAGCAGGTGTTGGCCG 60.742 63.158 0.00 0.00 0.00 6.13
252 253 1.911269 TAGAGCAGGTGTTGGCCGA 60.911 57.895 0.00 0.00 0.00 5.54
253 254 1.476845 TAGAGCAGGTGTTGGCCGAA 61.477 55.000 0.00 0.00 0.00 4.30
254 255 2.281761 AGCAGGTGTTGGCCGAAG 60.282 61.111 0.00 0.00 0.00 3.79
255 256 2.281484 GCAGGTGTTGGCCGAAGA 60.281 61.111 0.00 0.00 0.00 2.87
256 257 2.328099 GCAGGTGTTGGCCGAAGAG 61.328 63.158 0.00 0.00 0.00 2.85
257 258 1.672356 CAGGTGTTGGCCGAAGAGG 60.672 63.158 0.00 0.00 44.97 3.69
258 259 2.359975 GGTGTTGGCCGAAGAGGG 60.360 66.667 0.00 0.00 41.48 4.30
259 260 2.747686 GTGTTGGCCGAAGAGGGA 59.252 61.111 0.00 0.00 41.48 4.20
260 261 1.671379 GTGTTGGCCGAAGAGGGAC 60.671 63.158 0.00 0.00 41.48 4.46
274 275 3.668386 GGACTCTTTGGCCAACGG 58.332 61.111 20.35 14.40 45.54 4.44
275 276 1.228154 GGACTCTTTGGCCAACGGT 60.228 57.895 20.35 16.76 45.54 4.83
276 277 0.822121 GGACTCTTTGGCCAACGGTT 60.822 55.000 20.35 6.82 45.54 4.44
277 278 0.310854 GACTCTTTGGCCAACGGTTG 59.689 55.000 20.35 13.86 0.00 3.77
290 291 3.362262 GGTTGGCCGAAAAGTCCC 58.638 61.111 0.00 0.00 0.00 4.46
291 292 1.228459 GGTTGGCCGAAAAGTCCCT 60.228 57.895 0.00 0.00 0.00 4.20
292 293 1.241990 GGTTGGCCGAAAAGTCCCTC 61.242 60.000 0.00 0.00 0.00 4.30
293 294 0.250770 GTTGGCCGAAAAGTCCCTCT 60.251 55.000 0.00 0.00 0.00 3.69
294 295 0.476771 TTGGCCGAAAAGTCCCTCTT 59.523 50.000 0.00 0.00 38.10 2.85
295 296 0.036306 TGGCCGAAAAGTCCCTCTTC 59.964 55.000 0.00 0.00 35.02 2.87
296 297 1.019805 GGCCGAAAAGTCCCTCTTCG 61.020 60.000 0.00 0.00 41.18 3.79
298 299 2.457080 CGAAAAGTCCCTCTTCGGC 58.543 57.895 0.00 0.00 38.57 5.54
299 300 1.019805 CGAAAAGTCCCTCTTCGGCC 61.020 60.000 0.00 0.00 38.57 6.13
300 301 0.036306 GAAAAGTCCCTCTTCGGCCA 59.964 55.000 2.24 0.00 35.02 5.36
301 302 0.476771 AAAAGTCCCTCTTCGGCCAA 59.523 50.000 2.24 0.00 35.02 4.52
302 303 0.250770 AAAGTCCCTCTTCGGCCAAC 60.251 55.000 2.24 0.00 35.02 3.77
303 304 1.415672 AAGTCCCTCTTCGGCCAACA 61.416 55.000 2.24 0.00 0.00 3.33
304 305 1.376037 GTCCCTCTTCGGCCAACAG 60.376 63.158 2.24 0.00 0.00 3.16
305 306 2.045926 CCCTCTTCGGCCAACAGG 60.046 66.667 2.24 1.33 0.00 4.00
306 307 2.592993 CCCTCTTCGGCCAACAGGA 61.593 63.158 2.24 0.00 0.00 3.86
307 308 1.078848 CCTCTTCGGCCAACAGGAG 60.079 63.158 2.24 0.69 0.00 3.69
308 309 1.078848 CTCTTCGGCCAACAGGAGG 60.079 63.158 2.24 0.00 0.00 4.30
314 315 2.282180 GCCAACAGGAGGCCGAAA 60.282 61.111 0.00 0.00 46.50 3.46
315 316 1.678970 GCCAACAGGAGGCCGAAAT 60.679 57.895 0.00 0.00 46.50 2.17
316 317 1.937546 GCCAACAGGAGGCCGAAATG 61.938 60.000 0.00 0.00 46.50 2.32
317 318 0.609131 CCAACAGGAGGCCGAAATGT 60.609 55.000 0.00 0.00 0.00 2.71
318 319 0.804989 CAACAGGAGGCCGAAATGTC 59.195 55.000 0.00 0.00 0.00 3.06
319 320 0.322546 AACAGGAGGCCGAAATGTCC 60.323 55.000 0.00 0.00 0.00 4.02
320 321 1.452108 CAGGAGGCCGAAATGTCCC 60.452 63.158 0.00 0.00 0.00 4.46
321 322 1.616628 AGGAGGCCGAAATGTCCCT 60.617 57.895 0.00 0.00 0.00 4.20
322 323 1.208165 AGGAGGCCGAAATGTCCCTT 61.208 55.000 0.00 0.00 0.00 3.95
323 324 0.323451 GGAGGCCGAAATGTCCCTTT 60.323 55.000 0.00 0.00 0.00 3.11
324 325 1.545841 GAGGCCGAAATGTCCCTTTT 58.454 50.000 0.00 0.00 0.00 2.27
325 326 1.472878 GAGGCCGAAATGTCCCTTTTC 59.527 52.381 0.00 0.00 0.00 2.29
332 333 3.897325 GAAATGTCCCTTTTCGGTCAAC 58.103 45.455 0.00 0.00 0.00 3.18
333 334 2.649531 ATGTCCCTTTTCGGTCAACA 57.350 45.000 0.00 0.00 0.00 3.33
334 335 1.961793 TGTCCCTTTTCGGTCAACAG 58.038 50.000 0.00 0.00 0.00 3.16
335 336 1.235724 GTCCCTTTTCGGTCAACAGG 58.764 55.000 0.00 0.00 0.00 4.00
336 337 1.133363 TCCCTTTTCGGTCAACAGGA 58.867 50.000 0.00 0.00 0.00 3.86
337 338 1.071699 TCCCTTTTCGGTCAACAGGAG 59.928 52.381 0.00 0.00 0.00 3.69
338 339 1.523758 CCTTTTCGGTCAACAGGAGG 58.476 55.000 0.00 0.00 0.00 4.30
339 340 0.875059 CTTTTCGGTCAACAGGAGGC 59.125 55.000 0.00 0.00 0.00 4.70
340 341 0.536460 TTTTCGGTCAACAGGAGGCC 60.536 55.000 0.00 0.00 0.00 5.19
341 342 2.725203 TTTCGGTCAACAGGAGGCCG 62.725 60.000 0.00 0.00 43.32 6.13
342 343 3.691342 CGGTCAACAGGAGGCCGA 61.691 66.667 0.00 0.00 44.57 5.54
343 344 2.047179 GGTCAACAGGAGGCCGAC 60.047 66.667 0.00 0.00 0.00 4.79
344 345 2.432628 GTCAACAGGAGGCCGACG 60.433 66.667 0.00 0.00 0.00 5.12
345 346 3.691342 TCAACAGGAGGCCGACGG 61.691 66.667 10.29 10.29 0.00 4.79
346 347 4.760047 CAACAGGAGGCCGACGGG 62.760 72.222 17.22 0.00 0.00 5.28
352 353 2.836360 GAGGCCGACGGGGTGATA 60.836 66.667 17.22 0.00 38.44 2.15
353 354 3.148031 GAGGCCGACGGGGTGATAC 62.148 68.421 17.22 0.00 38.44 2.24
354 355 3.152400 GGCCGACGGGGTGATACT 61.152 66.667 17.22 0.00 38.44 2.12
355 356 2.728435 GGCCGACGGGGTGATACTT 61.728 63.158 17.22 0.00 38.44 2.24
356 357 1.219935 GCCGACGGGGTGATACTTT 59.780 57.895 17.22 0.00 38.44 2.66
357 358 0.392060 GCCGACGGGGTGATACTTTT 60.392 55.000 17.22 0.00 38.44 2.27
358 359 1.365699 CCGACGGGGTGATACTTTTG 58.634 55.000 5.81 0.00 0.00 2.44
359 360 1.066716 CCGACGGGGTGATACTTTTGA 60.067 52.381 5.81 0.00 0.00 2.69
360 361 2.419574 CCGACGGGGTGATACTTTTGAT 60.420 50.000 5.81 0.00 0.00 2.57
361 362 3.267483 CGACGGGGTGATACTTTTGATT 58.733 45.455 0.00 0.00 0.00 2.57
362 363 3.687698 CGACGGGGTGATACTTTTGATTT 59.312 43.478 0.00 0.00 0.00 2.17
363 364 4.155280 CGACGGGGTGATACTTTTGATTTT 59.845 41.667 0.00 0.00 0.00 1.82
364 365 5.637809 GACGGGGTGATACTTTTGATTTTC 58.362 41.667 0.00 0.00 0.00 2.29
365 366 4.461431 ACGGGGTGATACTTTTGATTTTCC 59.539 41.667 0.00 0.00 0.00 3.13
366 367 4.438200 CGGGGTGATACTTTTGATTTTCCG 60.438 45.833 0.00 0.00 0.00 4.30
367 368 4.421058 GGGTGATACTTTTGATTTTCCGC 58.579 43.478 0.00 0.00 0.00 5.54
368 369 4.082463 GGGTGATACTTTTGATTTTCCGCA 60.082 41.667 0.00 0.00 0.00 5.69
369 370 5.394115 GGGTGATACTTTTGATTTTCCGCAT 60.394 40.000 0.00 0.00 0.00 4.73
370 371 6.099341 GGTGATACTTTTGATTTTCCGCATT 58.901 36.000 0.00 0.00 0.00 3.56
371 372 7.254852 GGTGATACTTTTGATTTTCCGCATTA 58.745 34.615 0.00 0.00 0.00 1.90
372 373 7.432252 GGTGATACTTTTGATTTTCCGCATTAG 59.568 37.037 0.00 0.00 0.00 1.73
373 374 7.432252 GTGATACTTTTGATTTTCCGCATTAGG 59.568 37.037 0.00 0.00 0.00 2.69
374 375 5.072040 ACTTTTGATTTTCCGCATTAGGG 57.928 39.130 0.00 0.00 0.00 3.53
375 376 4.526650 ACTTTTGATTTTCCGCATTAGGGT 59.473 37.500 0.00 0.00 0.00 4.34
376 377 4.448537 TTTGATTTTCCGCATTAGGGTG 57.551 40.909 0.00 0.00 0.00 4.61
377 378 3.080300 TGATTTTCCGCATTAGGGTGT 57.920 42.857 0.00 0.00 0.00 4.16
378 379 4.223556 TGATTTTCCGCATTAGGGTGTA 57.776 40.909 0.00 0.00 0.00 2.90
379 380 4.787551 TGATTTTCCGCATTAGGGTGTAT 58.212 39.130 0.00 0.00 0.00 2.29
380 381 5.931294 TGATTTTCCGCATTAGGGTGTATA 58.069 37.500 0.00 0.00 0.00 1.47
381 382 5.995282 TGATTTTCCGCATTAGGGTGTATAG 59.005 40.000 0.00 0.00 0.00 1.31
382 383 5.362105 TTTTCCGCATTAGGGTGTATAGT 57.638 39.130 0.00 0.00 0.00 2.12
383 384 5.362105 TTTCCGCATTAGGGTGTATAGTT 57.638 39.130 0.00 0.00 0.00 2.24
384 385 5.362105 TTCCGCATTAGGGTGTATAGTTT 57.638 39.130 0.00 0.00 0.00 2.66
385 386 4.952460 TCCGCATTAGGGTGTATAGTTTC 58.048 43.478 0.00 0.00 0.00 2.78
386 387 4.062991 CCGCATTAGGGTGTATAGTTTCC 58.937 47.826 0.00 0.00 0.00 3.13
387 388 4.443739 CCGCATTAGGGTGTATAGTTTCCA 60.444 45.833 0.00 0.00 0.00 3.53
388 389 5.120399 CGCATTAGGGTGTATAGTTTCCAA 58.880 41.667 0.00 0.00 0.00 3.53
389 390 5.587043 CGCATTAGGGTGTATAGTTTCCAAA 59.413 40.000 0.00 0.00 0.00 3.28
390 391 6.262273 CGCATTAGGGTGTATAGTTTCCAAAT 59.738 38.462 0.00 0.00 0.00 2.32
391 392 7.201785 CGCATTAGGGTGTATAGTTTCCAAATT 60.202 37.037 0.00 0.00 0.00 1.82
392 393 8.474831 GCATTAGGGTGTATAGTTTCCAAATTT 58.525 33.333 0.00 0.00 0.00 1.82
393 394 9.801873 CATTAGGGTGTATAGTTTCCAAATTTG 57.198 33.333 11.40 11.40 0.00 2.32
394 395 6.280855 AGGGTGTATAGTTTCCAAATTTGC 57.719 37.500 12.92 0.00 0.00 3.68
395 396 6.016555 AGGGTGTATAGTTTCCAAATTTGCT 58.983 36.000 12.92 6.94 0.00 3.91
396 397 7.179269 AGGGTGTATAGTTTCCAAATTTGCTA 58.821 34.615 12.92 8.87 0.00 3.49
397 398 7.839200 AGGGTGTATAGTTTCCAAATTTGCTAT 59.161 33.333 12.92 14.69 0.00 2.97
398 399 9.127277 GGGTGTATAGTTTCCAAATTTGCTATA 57.873 33.333 12.92 13.82 0.00 1.31
466 467 8.581253 AGCATCTATATATACACTGTACTGCA 57.419 34.615 0.00 0.00 0.00 4.41
467 468 8.462811 AGCATCTATATATACACTGTACTGCAC 58.537 37.037 0.00 0.00 0.00 4.57
468 469 8.462811 GCATCTATATATACACTGTACTGCACT 58.537 37.037 0.00 0.00 0.00 4.40
473 474 8.919777 ATATATACACTGTACTGCACTACTCA 57.080 34.615 0.00 0.00 0.00 3.41
474 475 7.825331 ATATACACTGTACTGCACTACTCAT 57.175 36.000 0.00 0.00 0.00 2.90
475 476 4.179926 ACACTGTACTGCACTACTCATG 57.820 45.455 0.00 0.00 0.00 3.07
476 477 3.056536 ACACTGTACTGCACTACTCATGG 60.057 47.826 0.00 0.00 0.00 3.66
477 478 3.193479 CACTGTACTGCACTACTCATGGA 59.807 47.826 0.00 0.00 0.00 3.41
478 479 3.193691 ACTGTACTGCACTACTCATGGAC 59.806 47.826 0.00 0.00 0.00 4.02
479 480 2.163613 TGTACTGCACTACTCATGGACG 59.836 50.000 5.31 0.00 0.00 4.79
480 481 0.108615 ACTGCACTACTCATGGACGC 60.109 55.000 0.00 0.00 0.00 5.19
481 482 0.108662 CTGCACTACTCATGGACGCA 60.109 55.000 0.00 0.00 0.00 5.24
482 483 0.536724 TGCACTACTCATGGACGCAT 59.463 50.000 0.00 0.00 0.00 4.73
483 484 1.754226 TGCACTACTCATGGACGCATA 59.246 47.619 0.00 0.00 0.00 3.14
484 485 2.223805 TGCACTACTCATGGACGCATAG 60.224 50.000 0.00 0.00 0.00 2.23
485 486 2.398498 CACTACTCATGGACGCATAGC 58.602 52.381 0.00 0.00 0.00 2.97
499 500 3.319137 GCATAGCGGGATACTCAATCA 57.681 47.619 0.00 0.00 36.20 2.57
500 501 3.257393 GCATAGCGGGATACTCAATCAG 58.743 50.000 0.00 0.00 36.20 2.90
501 502 3.306364 GCATAGCGGGATACTCAATCAGT 60.306 47.826 0.00 0.00 39.41 3.41
502 503 4.082190 GCATAGCGGGATACTCAATCAGTA 60.082 45.833 0.00 0.00 42.09 2.74
515 516 7.976135 ACTCAATCAGTATCCATTTCATAGC 57.024 36.000 0.00 0.00 31.37 2.97
516 517 7.743749 ACTCAATCAGTATCCATTTCATAGCT 58.256 34.615 0.00 0.00 31.37 3.32
517 518 7.660617 ACTCAATCAGTATCCATTTCATAGCTG 59.339 37.037 0.00 0.00 31.37 4.24
518 519 6.938596 TCAATCAGTATCCATTTCATAGCTGG 59.061 38.462 0.00 0.00 0.00 4.85
519 520 6.692849 ATCAGTATCCATTTCATAGCTGGA 57.307 37.500 0.00 0.00 42.95 3.86
520 521 5.858381 TCAGTATCCATTTCATAGCTGGAC 58.142 41.667 0.00 0.00 41.65 4.02
521 522 4.687948 CAGTATCCATTTCATAGCTGGACG 59.312 45.833 0.00 0.00 41.65 4.79
522 523 2.620251 TCCATTTCATAGCTGGACGG 57.380 50.000 0.00 0.00 34.17 4.79
523 524 1.837439 TCCATTTCATAGCTGGACGGT 59.163 47.619 0.00 0.00 34.17 4.83
524 525 1.942657 CCATTTCATAGCTGGACGGTG 59.057 52.381 0.00 0.00 31.38 4.94
525 526 1.942657 CATTTCATAGCTGGACGGTGG 59.057 52.381 0.00 0.00 0.00 4.61
526 527 0.981183 TTTCATAGCTGGACGGTGGT 59.019 50.000 0.00 0.00 0.00 4.16
527 528 1.855295 TTCATAGCTGGACGGTGGTA 58.145 50.000 0.00 0.00 0.00 3.25
528 529 1.108776 TCATAGCTGGACGGTGGTAC 58.891 55.000 0.00 0.00 0.00 3.34
529 530 0.821517 CATAGCTGGACGGTGGTACA 59.178 55.000 0.00 0.00 35.16 2.90
572 573 7.592885 AGTTAAACGCTATATACTTCCTCCA 57.407 36.000 0.00 0.00 0.00 3.86
573 574 8.191534 AGTTAAACGCTATATACTTCCTCCAT 57.808 34.615 0.00 0.00 0.00 3.41
574 575 8.648693 AGTTAAACGCTATATACTTCCTCCATT 58.351 33.333 0.00 0.00 0.00 3.16
575 576 8.923683 GTTAAACGCTATATACTTCCTCCATTC 58.076 37.037 0.00 0.00 0.00 2.67
576 577 5.312120 ACGCTATATACTTCCTCCATTCG 57.688 43.478 0.00 0.00 0.00 3.34
577 578 5.008331 ACGCTATATACTTCCTCCATTCGA 58.992 41.667 0.00 0.00 0.00 3.71
578 579 5.475909 ACGCTATATACTTCCTCCATTCGAA 59.524 40.000 0.00 0.00 0.00 3.71
579 580 6.015688 ACGCTATATACTTCCTCCATTCGAAA 60.016 38.462 0.00 0.00 0.00 3.46
580 581 6.866770 CGCTATATACTTCCTCCATTCGAAAA 59.133 38.462 0.00 0.00 0.00 2.29
581 582 7.545965 CGCTATATACTTCCTCCATTCGAAAAT 59.454 37.037 0.00 0.00 0.00 1.82
582 583 9.871238 GCTATATACTTCCTCCATTCGAAAATA 57.129 33.333 0.00 0.00 0.00 1.40
586 587 6.743575 ACTTCCTCCATTCGAAAATACTTG 57.256 37.500 0.00 0.00 0.00 3.16
587 588 6.238648 ACTTCCTCCATTCGAAAATACTTGT 58.761 36.000 0.00 0.00 0.00 3.16
588 589 6.371825 ACTTCCTCCATTCGAAAATACTTGTC 59.628 38.462 0.00 0.00 0.00 3.18
589 590 5.800296 TCCTCCATTCGAAAATACTTGTCA 58.200 37.500 0.00 0.00 0.00 3.58
590 591 6.414732 TCCTCCATTCGAAAATACTTGTCAT 58.585 36.000 0.00 0.00 0.00 3.06
591 592 6.538742 TCCTCCATTCGAAAATACTTGTCATC 59.461 38.462 0.00 0.00 0.00 2.92
592 593 6.316140 CCTCCATTCGAAAATACTTGTCATCA 59.684 38.462 0.00 0.00 0.00 3.07
593 594 7.148255 CCTCCATTCGAAAATACTTGTCATCAA 60.148 37.037 0.00 0.00 0.00 2.57
594 595 8.105097 TCCATTCGAAAATACTTGTCATCAAA 57.895 30.769 0.00 0.00 32.87 2.69
595 596 8.572185 TCCATTCGAAAATACTTGTCATCAAAA 58.428 29.630 0.00 0.00 32.87 2.44
596 597 9.357652 CCATTCGAAAATACTTGTCATCAAAAT 57.642 29.630 0.00 0.00 32.87 1.82
680 681 9.158364 CATTTTGATGATAAGTATTTTCGGACG 57.842 33.333 0.00 0.00 0.00 4.79
681 682 8.481974 TTTTGATGATAAGTATTTTCGGACGA 57.518 30.769 0.00 0.00 0.00 4.20
682 683 8.481974 TTTGATGATAAGTATTTTCGGACGAA 57.518 30.769 2.62 2.62 0.00 3.85
683 684 7.694388 TGATGATAAGTATTTTCGGACGAAG 57.306 36.000 7.25 0.00 35.38 3.79
684 685 6.700081 TGATGATAAGTATTTTCGGACGAAGG 59.300 38.462 7.25 0.00 35.38 3.46
685 686 5.353938 TGATAAGTATTTTCGGACGAAGGG 58.646 41.667 7.25 0.00 35.38 3.95
686 687 3.967332 AAGTATTTTCGGACGAAGGGA 57.033 42.857 7.25 0.00 35.38 4.20
687 688 3.521947 AGTATTTTCGGACGAAGGGAG 57.478 47.619 7.25 0.00 35.38 4.30
688 689 2.830321 AGTATTTTCGGACGAAGGGAGT 59.170 45.455 7.25 0.00 35.38 3.85
689 690 4.019174 AGTATTTTCGGACGAAGGGAGTA 58.981 43.478 7.25 0.00 35.38 2.59
690 691 4.648307 AGTATTTTCGGACGAAGGGAGTAT 59.352 41.667 7.25 0.19 35.38 2.12
691 692 5.829924 AGTATTTTCGGACGAAGGGAGTATA 59.170 40.000 7.25 0.00 35.38 1.47
692 693 5.803237 ATTTTCGGACGAAGGGAGTATAT 57.197 39.130 7.25 0.00 35.38 0.86
693 694 6.906157 ATTTTCGGACGAAGGGAGTATATA 57.094 37.500 7.25 0.00 35.38 0.86
694 695 5.954296 TTTCGGACGAAGGGAGTATATAG 57.046 43.478 7.25 0.00 35.38 1.31
695 696 4.630644 TCGGACGAAGGGAGTATATAGT 57.369 45.455 0.00 0.00 0.00 2.12
696 697 5.745312 TCGGACGAAGGGAGTATATAGTA 57.255 43.478 0.00 0.00 0.00 1.82
697 698 6.305272 TCGGACGAAGGGAGTATATAGTAT 57.695 41.667 0.00 0.00 0.00 2.12
698 699 7.423844 TCGGACGAAGGGAGTATATAGTATA 57.576 40.000 0.00 0.00 0.00 1.47
699 700 7.268586 TCGGACGAAGGGAGTATATAGTATAC 58.731 42.308 0.00 0.00 0.00 1.47
700 701 7.124901 TCGGACGAAGGGAGTATATAGTATACT 59.875 40.741 10.87 10.87 37.53 2.12
701 702 8.417106 CGGACGAAGGGAGTATATAGTATACTA 58.583 40.741 14.87 14.87 35.20 1.82
702 703 9.762933 GGACGAAGGGAGTATATAGTATACTAG 57.237 40.741 17.31 2.78 35.20 2.57
712 713 9.349041 AGTATATAGTATACTAGACACCACCCT 57.651 37.037 17.31 0.48 33.45 4.34
713 714 9.393512 GTATATAGTATACTAGACACCACCCTG 57.606 40.741 17.31 0.00 0.00 4.45
716 717 2.526888 TACTAGACACCACCCTGAGG 57.473 55.000 0.00 0.00 40.04 3.86
732 733 4.862371 CCTGAGGGTATAGAGGGATACTC 58.138 52.174 0.00 0.00 46.98 2.59
774 779 5.394224 TGTGTTAATGACGTGGATACTCA 57.606 39.130 0.00 0.00 37.61 3.41
779 784 9.042008 GTGTTAATGACGTGGATACTCAATTAT 57.958 33.333 0.00 0.00 37.61 1.28
785 790 9.871238 ATGACGTGGATACTCAATTATAATACC 57.129 33.333 0.00 0.00 37.61 2.73
805 810 8.838649 AATACCCTAAAATTGGTTAGAAGCAT 57.161 30.769 0.00 0.00 36.16 3.79
839 844 6.017026 GCACTATAGTACTGCACTACTCATGA 60.017 42.308 4.74 0.00 42.56 3.07
843 848 1.714794 ACTGCACTACTCATGAACGC 58.285 50.000 0.00 0.00 0.00 4.84
866 871 7.235430 GCATAGCGGGATACTCAATTAATAC 57.765 40.000 0.00 0.00 0.00 1.89
871 876 5.800941 GCGGGATACTCAATTAATACTCTCG 59.199 44.000 0.00 0.00 0.00 4.04
875 880 9.790389 GGGATACTCAATTAATACTCTCGTATG 57.210 37.037 0.00 0.00 36.48 2.39
879 884 7.717568 ACTCAATTAATACTCTCGTATGCTGT 58.282 34.615 0.00 0.00 36.48 4.40
902 907 0.872021 GCAGGACGGCGATACTCAAG 60.872 60.000 16.62 0.00 0.00 3.02
910 915 5.506982 GGACGGCGATACTCAAGTAATACTT 60.507 44.000 16.62 0.00 39.39 2.24
953 962 9.854668 CCTATATATACACTATCCTGCACTACT 57.145 37.037 0.00 0.00 0.00 2.57
956 965 1.405821 ACACTATCCTGCACTACTCGC 59.594 52.381 0.00 0.00 0.00 5.03
967 976 3.253432 TGCACTACTCGCAGACATATAGG 59.747 47.826 0.00 0.00 33.55 2.57
968 977 3.502595 GCACTACTCGCAGACATATAGGA 59.497 47.826 0.00 0.00 0.00 2.94
969 978 4.023107 GCACTACTCGCAGACATATAGGAA 60.023 45.833 0.00 0.00 0.00 3.36
980 989 7.095187 CGCAGACATATAGGAAAATTAACCTCC 60.095 40.741 6.62 0.00 37.68 4.30
984 993 7.004691 ACATATAGGAAAATTAACCTCCAGCC 58.995 38.462 6.62 0.00 37.68 4.85
996 1005 2.849943 ACCTCCAGCCACCAATAATACA 59.150 45.455 0.00 0.00 0.00 2.29
1013 1022 1.450312 CACCCATGGCCTTCGACTC 60.450 63.158 6.09 0.00 0.00 3.36
1015 1024 2.669133 CCCATGGCCTTCGACTCCA 61.669 63.158 6.09 2.43 0.00 3.86
1030 1039 2.825836 CCAACCATGAGCGCCTCC 60.826 66.667 2.29 0.00 0.00 4.30
1032 1041 4.473520 AACCATGAGCGCCTCCGG 62.474 66.667 2.29 2.27 34.32 5.14
1117 1126 1.694169 ATCCCGGCCATCTTCCACT 60.694 57.895 2.24 0.00 0.00 4.00
1173 1185 1.378382 CACCGATGTTGCCATCCCA 60.378 57.895 0.00 0.00 43.87 4.37
1193 1205 3.147595 CATCGACCTCTCGGGCCA 61.148 66.667 4.39 0.00 40.58 5.36
1214 1241 1.596934 GATCGGAGGTGGTCAGCAA 59.403 57.895 2.96 0.00 0.00 3.91
1221 1248 0.550914 AGGTGGTCAGCAAGGTGAAA 59.449 50.000 3.23 0.00 0.00 2.69
1237 1264 2.096013 GTGAAAGCGGCTATGGAGAAAC 59.904 50.000 1.35 0.00 0.00 2.78
1329 1356 0.246635 GCTTTCACGAGGAGCCTGTA 59.753 55.000 0.00 0.00 0.00 2.74
1359 1386 0.465824 AGCTCTACTACACGCGGGAT 60.466 55.000 19.19 0.98 0.00 3.85
1383 1410 2.586900 GAGAGACACGTCAAGTACAGC 58.413 52.381 0.00 0.00 0.00 4.40
1443 1470 2.159707 GCGTGACACCATGTACATCAAC 60.160 50.000 5.07 0.00 0.00 3.18
1449 1476 0.650512 CCATGTACATCAACGACGCC 59.349 55.000 5.07 0.00 0.00 5.68
1451 1478 0.804544 ATGTACATCAACGACGCCGG 60.805 55.000 1.41 0.00 40.78 6.13
1519 1549 1.103803 GGAGTACACGAGGCTCATGA 58.896 55.000 18.56 0.00 0.00 3.07
1530 1560 2.516460 CTCATGAGGCAGCTGGGC 60.516 66.667 17.12 8.72 43.80 5.36
1638 1668 2.058595 CGGCTGCCACTACTACCCT 61.059 63.158 20.29 0.00 0.00 4.34
1711 1741 2.099652 CTTCCTCACCGTGGTGCTCA 62.100 60.000 14.25 0.00 45.04 4.26
1712 1742 2.047844 CCTCACCGTGGTGCTCAG 60.048 66.667 14.25 6.69 45.04 3.35
1714 1744 4.314440 TCACCGTGGTGCTCAGGC 62.314 66.667 14.25 0.00 45.04 4.85
1767 1973 2.250188 GAATATGGCAACGTTGTGTGC 58.750 47.619 27.78 15.42 42.51 4.57
1823 2029 1.484240 ACAGGACTATCAAGGCAGAGC 59.516 52.381 0.00 0.00 29.10 4.09
1834 2040 2.358003 GCAGAGCAGCTGTTCGGT 60.358 61.111 26.16 9.20 46.62 4.69
1902 3606 2.159184 TCGACTGCTTGAGGCTCTAATG 60.159 50.000 16.72 4.98 42.39 1.90
1953 3657 7.072030 CAGTGCAAAATAGACCGAATAATAGC 58.928 38.462 0.00 0.00 0.00 2.97
1957 3661 8.682710 TGCAAAATAGACCGAATAATAGCTTTT 58.317 29.630 0.00 0.00 0.00 2.27
1965 3669 8.204836 AGACCGAATAATAGCTTTTAGATGTGT 58.795 33.333 0.00 0.00 0.00 3.72
1971 3675 3.678056 AGCTTTTAGATGTGTGGTCGA 57.322 42.857 0.00 0.00 0.00 4.20
1975 3679 4.503910 CTTTTAGATGTGTGGTCGATCCA 58.496 43.478 0.00 0.00 45.01 3.41
2004 3721 9.692749 TTCGGATATGTATGTCTTCTTTATCAC 57.307 33.333 0.00 0.00 0.00 3.06
2006 3723 7.273598 CGGATATGTATGTCTTCTTTATCACGG 59.726 40.741 0.00 0.00 0.00 4.94
2030 3747 6.395629 GGATAATTTCATCCAATCAGCCATG 58.604 40.000 2.81 0.00 43.52 3.66
2050 3767 4.574674 TGGCTCCATTGTTCAGTCTTAT 57.425 40.909 0.00 0.00 0.00 1.73
2059 3776 8.801299 TCCATTGTTCAGTCTTATTTAAATGCA 58.199 29.630 11.05 0.00 0.00 3.96
2095 3812 8.260114 CCATTTAATCCTTGCAAAATAGAACCT 58.740 33.333 0.00 0.00 0.00 3.50
2104 3821 4.082081 TGCAAAATAGAACCTCCAATGCAG 60.082 41.667 0.00 0.00 36.46 4.41
2113 3830 2.954318 ACCTCCAATGCAGCAATGTATC 59.046 45.455 9.65 0.00 0.00 2.24
2119 3836 5.239963 TCCAATGCAGCAATGTATCTACATG 59.760 40.000 9.65 0.00 45.55 3.21
2183 3941 3.402058 AGCACTCGTCGACATAGTAAC 57.598 47.619 17.16 12.75 0.00 2.50
2191 3949 2.086094 TCGACATAGTAACACGCCTCA 58.914 47.619 0.00 0.00 0.00 3.86
2195 3953 4.496840 CGACATAGTAACACGCCTCACATA 60.497 45.833 0.00 0.00 0.00 2.29
2201 3959 1.475403 ACACGCCTCACATAGCTACT 58.525 50.000 0.00 0.00 0.00 2.57
2203 3961 0.663688 ACGCCTCACATAGCTACTCG 59.336 55.000 0.00 0.00 0.00 4.18
2205 3963 0.315568 GCCTCACATAGCTACTCGGG 59.684 60.000 0.00 0.00 0.00 5.14
2206 3964 0.315568 CCTCACATAGCTACTCGGGC 59.684 60.000 0.00 0.00 0.00 6.13
2207 3965 0.315568 CTCACATAGCTACTCGGGCC 59.684 60.000 0.00 0.00 0.00 5.80
2208 3966 0.396556 TCACATAGCTACTCGGGCCA 60.397 55.000 4.39 0.00 0.00 5.36
2209 3967 0.032678 CACATAGCTACTCGGGCCAG 59.967 60.000 4.39 0.00 0.00 4.85
2210 3968 1.005630 CATAGCTACTCGGGCCAGC 60.006 63.158 4.39 4.07 35.49 4.85
2211 3969 2.565645 ATAGCTACTCGGGCCAGCG 61.566 63.158 4.39 0.00 40.29 5.18
2212 3970 2.978298 ATAGCTACTCGGGCCAGCGA 62.978 60.000 4.39 4.15 40.29 4.93
2213 3971 4.577246 GCTACTCGGGCCAGCGAG 62.577 72.222 24.49 24.49 38.14 5.03
2214 3972 4.577246 CTACTCGGGCCAGCGAGC 62.577 72.222 25.60 0.00 35.84 5.03
2224 3982 4.731612 CAGCGAGCTCGTGGCACT 62.732 66.667 34.46 20.93 44.79 4.40
2225 3983 4.731612 AGCGAGCTCGTGGCACTG 62.732 66.667 34.46 9.49 44.79 3.66
2227 3985 3.108289 CGAGCTCGTGGCACTGTG 61.108 66.667 27.79 2.76 44.79 3.66
2228 3986 3.418068 GAGCTCGTGGCACTGTGC 61.418 66.667 24.02 24.02 44.79 4.57
2287 4121 0.320771 GACACGGAGGCACACATCTT 60.321 55.000 0.00 0.00 0.00 2.40
2318 4156 0.462759 CCCTTTCATCCCAGACGCTC 60.463 60.000 0.00 0.00 0.00 5.03
2325 4163 2.167693 TCATCCCAGACGCTCGTATTTT 59.832 45.455 0.00 0.00 0.00 1.82
2362 4200 2.050168 ATGTGCGTGCTTTTGCCG 60.050 55.556 0.00 0.00 46.87 5.69
2369 4207 1.539776 CGTGCTTTTGCCGCTGAAAC 61.540 55.000 0.00 0.00 46.87 2.78
2380 4218 0.110056 CGCTGAAACGCTGATGCTTT 60.110 50.000 0.00 0.00 36.97 3.51
2389 4246 3.347216 ACGCTGATGCTTTCTATTTGGT 58.653 40.909 0.00 0.00 36.97 3.67
2392 4249 5.163754 ACGCTGATGCTTTCTATTTGGTTAC 60.164 40.000 0.00 0.00 36.97 2.50
2399 4256 5.183140 TGCTTTCTATTTGGTTACTGCTTCC 59.817 40.000 0.00 0.00 0.00 3.46
2401 4258 3.869065 TCTATTTGGTTACTGCTTCCGG 58.131 45.455 0.00 0.00 0.00 5.14
2402 4259 1.834188 ATTTGGTTACTGCTTCCGGG 58.166 50.000 0.00 0.00 0.00 5.73
2403 4260 0.475044 TTTGGTTACTGCTTCCGGGT 59.525 50.000 0.00 0.00 0.00 5.28
2404 4261 0.250553 TTGGTTACTGCTTCCGGGTG 60.251 55.000 0.00 0.00 0.00 4.61
2405 4262 1.373812 GGTTACTGCTTCCGGGTGT 59.626 57.895 0.00 0.00 0.00 4.16
2408 4265 0.470766 TTACTGCTTCCGGGTGTGTT 59.529 50.000 0.00 0.00 0.00 3.32
2409 4266 0.470766 TACTGCTTCCGGGTGTGTTT 59.529 50.000 0.00 0.00 0.00 2.83
2410 4267 1.101049 ACTGCTTCCGGGTGTGTTTG 61.101 55.000 0.00 0.00 0.00 2.93
2411 4268 1.795170 CTGCTTCCGGGTGTGTTTGG 61.795 60.000 0.00 0.00 0.00 3.28
2412 4269 1.527380 GCTTCCGGGTGTGTTTGGA 60.527 57.895 0.00 0.00 0.00 3.53
2413 4270 0.893727 GCTTCCGGGTGTGTTTGGAT 60.894 55.000 0.00 0.00 0.00 3.41
2414 4271 1.616159 CTTCCGGGTGTGTTTGGATT 58.384 50.000 0.00 0.00 0.00 3.01
2415 4272 1.269448 CTTCCGGGTGTGTTTGGATTG 59.731 52.381 0.00 0.00 0.00 2.67
2418 4275 0.881118 CGGGTGTGTTTGGATTGAGG 59.119 55.000 0.00 0.00 0.00 3.86
2420 4277 1.256812 GGTGTGTTTGGATTGAGGGG 58.743 55.000 0.00 0.00 0.00 4.79
2424 4281 0.486879 TGTTTGGATTGAGGGGCCTT 59.513 50.000 0.84 0.00 0.00 4.35
2438 4295 0.175531 GGCCTTGTGTTGTGCAAAGT 59.824 50.000 0.00 0.00 0.00 2.66
2441 4298 2.357637 GCCTTGTGTTGTGCAAAGTCTA 59.642 45.455 0.00 0.00 0.00 2.59
2444 4301 4.335315 CCTTGTGTTGTGCAAAGTCTAGAA 59.665 41.667 0.00 0.00 0.00 2.10
2448 4305 4.811557 GTGTTGTGCAAAGTCTAGAAGAGT 59.188 41.667 0.00 0.00 0.00 3.24
2458 4316 5.975693 AGTCTAGAAGAGTTGAGTTCTGG 57.024 43.478 0.00 0.00 34.76 3.86
2470 4328 7.605691 AGAGTTGAGTTCTGGACAAATCATTAG 59.394 37.037 0.00 0.00 39.80 1.73
2472 4330 8.375506 AGTTGAGTTCTGGACAAATCATTAGTA 58.624 33.333 0.00 0.00 30.87 1.82
2477 4335 8.375506 AGTTCTGGACAAATCATTAGTACTTCA 58.624 33.333 0.00 0.00 0.00 3.02
2479 4337 7.907389 TCTGGACAAATCATTAGTACTTCAGT 58.093 34.615 0.00 0.00 0.00 3.41
2503 4361 9.169592 AGTACTTTTATTGTTGTACAGTTGTGT 57.830 29.630 0.00 0.00 41.06 3.72
2517 4375 3.732219 CAGTTGTGTTATGCTTGTTGCTG 59.268 43.478 0.00 0.00 43.37 4.41
2518 4376 3.052036 GTTGTGTTATGCTTGTTGCTGG 58.948 45.455 0.00 0.00 43.37 4.85
2556 4414 6.934056 TGAACTATGCATGCCAATTACTTTT 58.066 32.000 16.68 0.00 0.00 2.27
2585 4443 4.022935 ACTTGTCAATTGTTCATGTGCGAT 60.023 37.500 5.13 0.00 0.00 4.58
2601 4459 3.073678 TGCGATTGTGTCATGCTTTAGT 58.926 40.909 0.00 0.00 0.00 2.24
2606 4464 4.725556 TTGTGTCATGCTTTAGTTCGTC 57.274 40.909 0.00 0.00 0.00 4.20
2616 4474 3.918591 GCTTTAGTTCGTCGAGTCATTCA 59.081 43.478 0.00 0.00 0.00 2.57
2624 4482 5.915812 TCGTCGAGTCATTCAAAAATTCA 57.084 34.783 0.00 0.00 0.00 2.57
2625 4483 5.675970 TCGTCGAGTCATTCAAAAATTCAC 58.324 37.500 0.00 0.00 0.00 3.18
2626 4484 4.545807 CGTCGAGTCATTCAAAAATTCACG 59.454 41.667 0.00 0.00 0.00 4.35
2627 4485 5.440685 GTCGAGTCATTCAAAAATTCACGT 58.559 37.500 0.00 0.00 0.00 4.49
2628 4486 5.560378 GTCGAGTCATTCAAAAATTCACGTC 59.440 40.000 0.00 0.00 0.00 4.34
2630 4488 5.906838 CGAGTCATTCAAAAATTCACGTCAA 59.093 36.000 0.00 0.00 0.00 3.18
2631 4489 6.578545 CGAGTCATTCAAAAATTCACGTCAAT 59.421 34.615 0.00 0.00 0.00 2.57
2645 4503 6.474819 TCACGTCAATGTTAGTTAATGTGG 57.525 37.500 0.00 0.00 0.00 4.17
2647 4505 7.153315 TCACGTCAATGTTAGTTAATGTGGTA 58.847 34.615 0.00 0.00 0.00 3.25
2665 4523 2.857748 GGTATTTACCGAAACCGTACCG 59.142 50.000 0.00 0.00 36.50 4.02
2672 4530 2.231235 ACCGAAACCGTACCGAAATAGT 59.769 45.455 0.00 0.00 0.00 2.12
2673 4531 3.442273 ACCGAAACCGTACCGAAATAGTA 59.558 43.478 0.00 0.00 0.00 1.82
2695 4553 3.631145 GGTTTTAACCGAACTGAACCC 57.369 47.619 0.00 0.00 39.66 4.11
2696 4554 2.950975 GGTTTTAACCGAACTGAACCCA 59.049 45.455 0.00 0.00 39.66 4.51
2698 4556 4.038282 GGTTTTAACCGAACTGAACCCAAT 59.962 41.667 0.00 0.00 39.66 3.16
2702 4560 4.746535 AACCGAACTGAACCCAATTTTT 57.253 36.364 0.00 0.00 0.00 1.94
2710 4568 4.575645 ACTGAACCCAATTTTTGTTGCATG 59.424 37.500 0.00 0.00 0.00 4.06
2712 4570 4.574013 TGAACCCAATTTTTGTTGCATGTC 59.426 37.500 0.00 0.00 0.00 3.06
2713 4571 3.129871 ACCCAATTTTTGTTGCATGTCG 58.870 40.909 0.00 0.00 0.00 4.35
2728 4588 7.066404 TGTTGCATGTCGTATTAACCAATGTAT 59.934 33.333 0.00 0.00 0.00 2.29
2731 4591 7.281100 TGCATGTCGTATTAACCAATGTATGAA 59.719 33.333 0.00 0.00 0.00 2.57
2767 4627 5.516339 ACAATAAACCGTACTAATCGAACCG 59.484 40.000 0.00 0.00 0.00 4.44
2791 4651 7.641020 CCGTATTAACCAAATTAATCGAACACC 59.359 37.037 0.00 0.00 41.66 4.16
2794 4654 5.385509 AACCAAATTAATCGAACACCCAG 57.614 39.130 0.00 0.00 0.00 4.45
2800 4660 1.213296 AATCGAACACCCAGGGCTAT 58.787 50.000 4.91 0.00 0.00 2.97
2815 4675 2.816087 GGGCTATTCACATGGTAGCATG 59.184 50.000 28.72 28.72 41.93 4.06
2816 4676 3.496692 GGGCTATTCACATGGTAGCATGA 60.497 47.826 35.01 16.83 41.93 3.07
2817 4677 3.499918 GGCTATTCACATGGTAGCATGAC 59.500 47.826 35.01 16.88 41.93 3.06
2818 4678 3.185188 GCTATTCACATGGTAGCATGACG 59.815 47.826 35.01 25.37 40.33 4.35
2819 4679 2.760634 TTCACATGGTAGCATGACGT 57.239 45.000 35.01 15.10 36.48 4.34
2820 4680 2.008752 TCACATGGTAGCATGACGTG 57.991 50.000 35.01 24.23 36.48 4.49
2821 4681 1.548269 TCACATGGTAGCATGACGTGA 59.452 47.619 35.01 25.80 36.48 4.35
2822 4682 1.929169 CACATGGTAGCATGACGTGAG 59.071 52.381 35.01 16.22 36.48 3.51
2823 4683 1.134699 ACATGGTAGCATGACGTGAGG 60.135 52.381 35.01 11.70 36.48 3.86
2824 4684 1.136891 CATGGTAGCATGACGTGAGGA 59.863 52.381 27.06 0.00 34.66 3.71
2825 4685 1.485124 TGGTAGCATGACGTGAGGAT 58.515 50.000 0.00 0.00 0.00 3.24
2826 4686 2.661718 TGGTAGCATGACGTGAGGATA 58.338 47.619 0.00 0.00 0.00 2.59
2827 4687 3.028130 TGGTAGCATGACGTGAGGATAA 58.972 45.455 0.00 0.00 0.00 1.75
2828 4688 3.449377 TGGTAGCATGACGTGAGGATAAA 59.551 43.478 0.00 0.00 0.00 1.40
2831 4691 5.634020 GGTAGCATGACGTGAGGATAAATAC 59.366 44.000 0.00 0.00 0.00 1.89
2832 4692 4.299155 AGCATGACGTGAGGATAAATACG 58.701 43.478 0.00 0.00 0.00 3.06
2833 4693 3.120991 GCATGACGTGAGGATAAATACGC 60.121 47.826 0.00 0.00 0.00 4.42
2850 4714 0.677288 CGCCCGAATGGTAGGATGTA 59.323 55.000 0.00 0.00 36.04 2.29
2855 4719 5.310451 GCCCGAATGGTAGGATGTATTTTA 58.690 41.667 0.00 0.00 36.04 1.52
2872 4736 3.965379 TTTACATACGCCTCTTCCACA 57.035 42.857 0.00 0.00 0.00 4.17
2874 4738 5.601583 TTTACATACGCCTCTTCCACATA 57.398 39.130 0.00 0.00 0.00 2.29
2876 4740 4.258702 ACATACGCCTCTTCCACATATC 57.741 45.455 0.00 0.00 0.00 1.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.965824 CTACTGGTTCTTTGTGAATTTGTTTAT 57.034 29.630 0.00 0.00 36.99 1.40
2 3 6.756542 GCTACTGGTTCTTTGTGAATTTGTTT 59.243 34.615 0.00 0.00 36.99 2.83
4 5 5.359576 TGCTACTGGTTCTTTGTGAATTTGT 59.640 36.000 0.00 0.00 36.99 2.83
6 7 6.463995 TTGCTACTGGTTCTTTGTGAATTT 57.536 33.333 0.00 0.00 36.99 1.82
7 8 6.463995 TTTGCTACTGGTTCTTTGTGAATT 57.536 33.333 0.00 0.00 36.99 2.17
10 11 5.650266 TCTTTTTGCTACTGGTTCTTTGTGA 59.350 36.000 0.00 0.00 0.00 3.58
12 13 6.524101 TTCTTTTTGCTACTGGTTCTTTGT 57.476 33.333 0.00 0.00 0.00 2.83
13 14 7.202526 TGATTCTTTTTGCTACTGGTTCTTTG 58.797 34.615 0.00 0.00 0.00 2.77
14 15 7.346751 TGATTCTTTTTGCTACTGGTTCTTT 57.653 32.000 0.00 0.00 0.00 2.52
15 16 6.959639 TGATTCTTTTTGCTACTGGTTCTT 57.040 33.333 0.00 0.00 0.00 2.52
16 17 6.944862 AGATGATTCTTTTTGCTACTGGTTCT 59.055 34.615 0.00 0.00 0.00 3.01
17 18 7.150783 AGATGATTCTTTTTGCTACTGGTTC 57.849 36.000 0.00 0.00 0.00 3.62
18 19 7.530426 AAGATGATTCTTTTTGCTACTGGTT 57.470 32.000 0.00 0.00 39.18 3.67
19 20 8.635765 TTAAGATGATTCTTTTTGCTACTGGT 57.364 30.769 0.00 0.00 42.29 4.00
20 21 9.912634 TTTTAAGATGATTCTTTTTGCTACTGG 57.087 29.630 0.00 0.00 42.29 4.00
49 50 9.998106 GATTGCCTATAATTTGAGTTAGGAGTA 57.002 33.333 0.00 0.00 34.36 2.59
50 51 8.718656 AGATTGCCTATAATTTGAGTTAGGAGT 58.281 33.333 0.00 0.00 34.36 3.85
64 65 9.845740 TTGCTCAAATAACTAGATTGCCTATAA 57.154 29.630 0.00 0.00 0.00 0.98
65 66 9.845740 TTTGCTCAAATAACTAGATTGCCTATA 57.154 29.630 0.00 0.00 0.00 1.31
66 67 8.752005 TTTGCTCAAATAACTAGATTGCCTAT 57.248 30.769 0.00 0.00 0.00 2.57
67 68 8.752005 ATTTGCTCAAATAACTAGATTGCCTA 57.248 30.769 6.08 0.00 39.08 3.93
68 69 7.651027 ATTTGCTCAAATAACTAGATTGCCT 57.349 32.000 6.08 0.00 39.08 4.75
69 70 7.975616 TGAATTTGCTCAAATAACTAGATTGCC 59.024 33.333 8.11 0.00 39.88 4.52
70 71 8.915871 TGAATTTGCTCAAATAACTAGATTGC 57.084 30.769 8.11 0.00 39.88 3.56
111 112 9.787532 CAAGTTTGACTAGATTTGAAAGTTTGA 57.212 29.630 0.00 0.00 0.00 2.69
112 113 9.787532 TCAAGTTTGACTAGATTTGAAAGTTTG 57.212 29.630 0.00 0.00 31.01 2.93
222 223 7.254852 CAACACCTGCTCTACTGTTTTAAAAA 58.745 34.615 1.31 0.00 0.00 1.94
223 224 6.183360 CCAACACCTGCTCTACTGTTTTAAAA 60.183 38.462 0.00 0.00 0.00 1.52
224 225 5.298276 CCAACACCTGCTCTACTGTTTTAAA 59.702 40.000 0.00 0.00 0.00 1.52
225 226 4.819630 CCAACACCTGCTCTACTGTTTTAA 59.180 41.667 0.00 0.00 0.00 1.52
226 227 4.385825 CCAACACCTGCTCTACTGTTTTA 58.614 43.478 0.00 0.00 0.00 1.52
227 228 3.214328 CCAACACCTGCTCTACTGTTTT 58.786 45.455 0.00 0.00 0.00 2.43
228 229 2.851195 CCAACACCTGCTCTACTGTTT 58.149 47.619 0.00 0.00 0.00 2.83
229 230 1.543429 GCCAACACCTGCTCTACTGTT 60.543 52.381 0.00 0.00 0.00 3.16
230 231 0.035458 GCCAACACCTGCTCTACTGT 59.965 55.000 0.00 0.00 0.00 3.55
231 232 0.674895 GGCCAACACCTGCTCTACTG 60.675 60.000 0.00 0.00 0.00 2.74
232 233 1.679898 GGCCAACACCTGCTCTACT 59.320 57.895 0.00 0.00 0.00 2.57
233 234 1.741770 CGGCCAACACCTGCTCTAC 60.742 63.158 2.24 0.00 0.00 2.59
234 235 1.476845 TTCGGCCAACACCTGCTCTA 61.477 55.000 2.24 0.00 0.00 2.43
235 236 2.738213 CTTCGGCCAACACCTGCTCT 62.738 60.000 2.24 0.00 0.00 4.09
236 237 2.281484 TTCGGCCAACACCTGCTC 60.281 61.111 2.24 0.00 0.00 4.26
237 238 2.281761 CTTCGGCCAACACCTGCT 60.282 61.111 2.24 0.00 0.00 4.24
238 239 2.281484 TCTTCGGCCAACACCTGC 60.281 61.111 2.24 0.00 0.00 4.85
239 240 1.672356 CCTCTTCGGCCAACACCTG 60.672 63.158 2.24 0.00 0.00 4.00
240 241 2.750350 CCTCTTCGGCCAACACCT 59.250 61.111 2.24 0.00 0.00 4.00
241 242 2.359975 CCCTCTTCGGCCAACACC 60.360 66.667 2.24 0.00 0.00 4.16
242 243 1.671379 GTCCCTCTTCGGCCAACAC 60.671 63.158 2.24 0.00 0.00 3.32
243 244 1.827399 GAGTCCCTCTTCGGCCAACA 61.827 60.000 2.24 0.00 0.00 3.33
244 245 1.079057 GAGTCCCTCTTCGGCCAAC 60.079 63.158 2.24 0.00 0.00 3.77
245 246 0.836400 AAGAGTCCCTCTTCGGCCAA 60.836 55.000 2.24 0.00 46.42 4.52
246 247 1.229209 AAGAGTCCCTCTTCGGCCA 60.229 57.895 2.24 0.00 46.42 5.36
247 248 3.715015 AAGAGTCCCTCTTCGGCC 58.285 61.111 0.00 0.00 46.42 6.13
253 254 0.402121 GTTGGCCAAAGAGTCCCTCT 59.598 55.000 22.47 0.00 43.37 3.69
254 255 0.955919 CGTTGGCCAAAGAGTCCCTC 60.956 60.000 25.20 6.23 0.00 4.30
255 256 1.073199 CGTTGGCCAAAGAGTCCCT 59.927 57.895 25.20 0.00 0.00 4.20
256 257 1.971695 CCGTTGGCCAAAGAGTCCC 60.972 63.158 30.02 11.17 0.00 4.46
257 258 0.822121 AACCGTTGGCCAAAGAGTCC 60.822 55.000 30.02 11.90 0.00 3.85
258 259 0.310854 CAACCGTTGGCCAAAGAGTC 59.689 55.000 30.02 12.63 0.00 3.36
259 260 1.106944 CCAACCGTTGGCCAAAGAGT 61.107 55.000 30.02 22.19 45.17 3.24
260 261 1.659794 CCAACCGTTGGCCAAAGAG 59.340 57.895 30.02 21.61 45.17 2.85
261 262 3.849064 CCAACCGTTGGCCAAAGA 58.151 55.556 30.02 1.47 45.17 2.52
273 274 1.228459 AGGGACTTTTCGGCCAACC 60.228 57.895 2.24 0.00 27.25 3.77
274 275 0.250770 AGAGGGACTTTTCGGCCAAC 60.251 55.000 2.24 0.00 41.55 3.77
275 276 0.476771 AAGAGGGACTTTTCGGCCAA 59.523 50.000 2.24 0.00 41.55 4.52
276 277 0.036306 GAAGAGGGACTTTTCGGCCA 59.964 55.000 2.24 0.00 39.71 5.36
277 278 2.855887 GAAGAGGGACTTTTCGGCC 58.144 57.895 0.00 0.00 39.71 6.13
281 282 0.036306 TGGCCGAAGAGGGACTTTTC 59.964 55.000 0.00 0.00 44.82 2.29
282 283 0.476771 TTGGCCGAAGAGGGACTTTT 59.523 50.000 0.00 0.00 41.55 2.27
283 284 0.250770 GTTGGCCGAAGAGGGACTTT 60.251 55.000 0.00 0.00 41.55 2.66
284 285 1.375326 GTTGGCCGAAGAGGGACTT 59.625 57.895 0.00 0.00 41.55 3.01
286 287 1.376037 CTGTTGGCCGAAGAGGGAC 60.376 63.158 0.00 0.00 41.48 4.46
287 288 2.592993 CCTGTTGGCCGAAGAGGGA 61.593 63.158 17.93 0.00 40.77 4.20
288 289 2.045926 CCTGTTGGCCGAAGAGGG 60.046 66.667 17.93 5.60 40.77 4.30
289 290 1.078848 CTCCTGTTGGCCGAAGAGG 60.079 63.158 19.01 19.01 45.00 3.69
290 291 1.078848 CCTCCTGTTGGCCGAAGAG 60.079 63.158 0.00 1.31 0.00 2.85
291 292 3.068881 CCTCCTGTTGGCCGAAGA 58.931 61.111 0.00 0.00 0.00 2.87
292 293 2.747855 GCCTCCTGTTGGCCGAAG 60.748 66.667 0.00 0.00 44.32 3.79
298 299 0.609131 ACATTTCGGCCTCCTGTTGG 60.609 55.000 0.00 0.00 0.00 3.77
299 300 0.804989 GACATTTCGGCCTCCTGTTG 59.195 55.000 0.00 0.00 0.00 3.33
300 301 0.322546 GGACATTTCGGCCTCCTGTT 60.323 55.000 0.00 0.00 0.00 3.16
301 302 1.299976 GGACATTTCGGCCTCCTGT 59.700 57.895 0.00 0.00 0.00 4.00
302 303 1.452108 GGGACATTTCGGCCTCCTG 60.452 63.158 0.00 0.00 0.00 3.86
303 304 1.208165 AAGGGACATTTCGGCCTCCT 61.208 55.000 0.00 0.00 0.00 3.69
304 305 0.323451 AAAGGGACATTTCGGCCTCC 60.323 55.000 0.00 0.00 0.00 4.30
305 306 1.472878 GAAAAGGGACATTTCGGCCTC 59.527 52.381 0.00 0.00 36.33 4.70
306 307 1.545841 GAAAAGGGACATTTCGGCCT 58.454 50.000 0.00 0.00 36.33 5.19
311 312 3.316868 TGTTGACCGAAAAGGGACATTTC 59.683 43.478 0.00 0.00 46.96 2.17
312 313 3.292460 TGTTGACCGAAAAGGGACATTT 58.708 40.909 0.00 0.00 46.96 2.32
313 314 2.884639 CTGTTGACCGAAAAGGGACATT 59.115 45.455 0.00 0.00 46.96 2.71
314 315 2.504367 CTGTTGACCGAAAAGGGACAT 58.496 47.619 0.00 0.00 46.96 3.06
315 316 1.476110 CCTGTTGACCGAAAAGGGACA 60.476 52.381 0.00 0.00 46.96 4.02
316 317 1.202722 TCCTGTTGACCGAAAAGGGAC 60.203 52.381 0.00 0.00 46.96 4.46
317 318 1.071699 CTCCTGTTGACCGAAAAGGGA 59.928 52.381 0.00 0.00 46.96 4.20
318 319 1.523758 CTCCTGTTGACCGAAAAGGG 58.476 55.000 0.00 0.00 46.96 3.95
320 321 0.875059 GCCTCCTGTTGACCGAAAAG 59.125 55.000 0.00 0.00 0.00 2.27
321 322 0.536460 GGCCTCCTGTTGACCGAAAA 60.536 55.000 0.00 0.00 0.00 2.29
322 323 1.072505 GGCCTCCTGTTGACCGAAA 59.927 57.895 0.00 0.00 0.00 3.46
323 324 2.747686 GGCCTCCTGTTGACCGAA 59.252 61.111 0.00 0.00 0.00 4.30
324 325 3.691342 CGGCCTCCTGTTGACCGA 61.691 66.667 0.00 0.00 46.71 4.69
325 326 3.691342 TCGGCCTCCTGTTGACCG 61.691 66.667 0.00 0.00 45.15 4.79
326 327 2.047179 GTCGGCCTCCTGTTGACC 60.047 66.667 0.00 0.00 0.00 4.02
327 328 2.432628 CGTCGGCCTCCTGTTGAC 60.433 66.667 0.00 0.00 0.00 3.18
328 329 3.691342 CCGTCGGCCTCCTGTTGA 61.691 66.667 0.00 0.00 0.00 3.18
329 330 4.760047 CCCGTCGGCCTCCTGTTG 62.760 72.222 5.50 0.00 0.00 3.33
335 336 2.836360 TATCACCCCGTCGGCCTC 60.836 66.667 5.50 0.00 33.26 4.70
336 337 3.152400 GTATCACCCCGTCGGCCT 61.152 66.667 5.50 0.00 33.26 5.19
337 338 2.248086 AAAGTATCACCCCGTCGGCC 62.248 60.000 5.50 0.00 33.26 6.13
338 339 0.392060 AAAAGTATCACCCCGTCGGC 60.392 55.000 5.50 0.00 33.26 5.54
339 340 1.066716 TCAAAAGTATCACCCCGTCGG 60.067 52.381 3.60 3.60 37.81 4.79
340 341 2.373540 TCAAAAGTATCACCCCGTCG 57.626 50.000 0.00 0.00 0.00 5.12
341 342 5.392703 GGAAAATCAAAAGTATCACCCCGTC 60.393 44.000 0.00 0.00 0.00 4.79
342 343 4.461431 GGAAAATCAAAAGTATCACCCCGT 59.539 41.667 0.00 0.00 0.00 5.28
343 344 4.438200 CGGAAAATCAAAAGTATCACCCCG 60.438 45.833 0.00 0.00 0.00 5.73
344 345 4.676986 GCGGAAAATCAAAAGTATCACCCC 60.677 45.833 0.00 0.00 0.00 4.95
345 346 4.082463 TGCGGAAAATCAAAAGTATCACCC 60.082 41.667 0.00 0.00 0.00 4.61
346 347 5.054390 TGCGGAAAATCAAAAGTATCACC 57.946 39.130 0.00 0.00 0.00 4.02
347 348 7.432252 CCTAATGCGGAAAATCAAAAGTATCAC 59.568 37.037 0.00 0.00 0.00 3.06
348 349 7.416213 CCCTAATGCGGAAAATCAAAAGTATCA 60.416 37.037 0.00 0.00 0.00 2.15
349 350 6.918022 CCCTAATGCGGAAAATCAAAAGTATC 59.082 38.462 0.00 0.00 0.00 2.24
350 351 6.379988 ACCCTAATGCGGAAAATCAAAAGTAT 59.620 34.615 0.00 0.00 0.00 2.12
351 352 5.712917 ACCCTAATGCGGAAAATCAAAAGTA 59.287 36.000 0.00 0.00 0.00 2.24
352 353 4.526650 ACCCTAATGCGGAAAATCAAAAGT 59.473 37.500 0.00 0.00 0.00 2.66
353 354 4.864247 CACCCTAATGCGGAAAATCAAAAG 59.136 41.667 0.00 0.00 0.00 2.27
354 355 4.282195 ACACCCTAATGCGGAAAATCAAAA 59.718 37.500 0.00 0.00 0.00 2.44
355 356 3.829601 ACACCCTAATGCGGAAAATCAAA 59.170 39.130 0.00 0.00 0.00 2.69
356 357 3.426615 ACACCCTAATGCGGAAAATCAA 58.573 40.909 0.00 0.00 0.00 2.57
357 358 3.080300 ACACCCTAATGCGGAAAATCA 57.920 42.857 0.00 0.00 0.00 2.57
358 359 5.995897 ACTATACACCCTAATGCGGAAAATC 59.004 40.000 0.00 0.00 0.00 2.17
359 360 5.937111 ACTATACACCCTAATGCGGAAAAT 58.063 37.500 0.00 0.00 0.00 1.82
360 361 5.362105 ACTATACACCCTAATGCGGAAAA 57.638 39.130 0.00 0.00 0.00 2.29
361 362 5.362105 AACTATACACCCTAATGCGGAAA 57.638 39.130 0.00 0.00 0.00 3.13
362 363 5.362105 AAACTATACACCCTAATGCGGAA 57.638 39.130 0.00 0.00 0.00 4.30
363 364 4.202284 GGAAACTATACACCCTAATGCGGA 60.202 45.833 0.00 0.00 0.00 5.54
364 365 4.062991 GGAAACTATACACCCTAATGCGG 58.937 47.826 0.00 0.00 0.00 5.69
365 366 4.699637 TGGAAACTATACACCCTAATGCG 58.300 43.478 0.00 0.00 0.00 4.73
366 367 7.582667 ATTTGGAAACTATACACCCTAATGC 57.417 36.000 0.00 0.00 0.00 3.56
367 368 9.801873 CAAATTTGGAAACTATACACCCTAATG 57.198 33.333 10.49 0.00 0.00 1.90
368 369 8.474831 GCAAATTTGGAAACTATACACCCTAAT 58.525 33.333 19.47 0.00 0.00 1.73
369 370 7.672239 AGCAAATTTGGAAACTATACACCCTAA 59.328 33.333 19.47 0.00 0.00 2.69
370 371 7.179269 AGCAAATTTGGAAACTATACACCCTA 58.821 34.615 19.47 0.00 0.00 3.53
371 372 6.016555 AGCAAATTTGGAAACTATACACCCT 58.983 36.000 19.47 0.38 0.00 4.34
372 373 6.280855 AGCAAATTTGGAAACTATACACCC 57.719 37.500 19.47 0.00 0.00 4.61
440 441 9.025041 TGCAGTACAGTGTATATATAGATGCTT 57.975 33.333 6.21 0.00 0.00 3.91
441 442 8.462811 GTGCAGTACAGTGTATATATAGATGCT 58.537 37.037 6.21 0.00 0.00 3.79
442 443 8.462811 AGTGCAGTACAGTGTATATATAGATGC 58.537 37.037 6.21 7.70 0.00 3.91
448 449 8.919777 TGAGTAGTGCAGTACAGTGTATATAT 57.080 34.615 28.82 8.23 32.79 0.86
449 450 8.784043 CATGAGTAGTGCAGTACAGTGTATATA 58.216 37.037 28.82 8.30 32.79 0.86
450 451 7.255625 CCATGAGTAGTGCAGTACAGTGTATAT 60.256 40.741 28.82 9.57 32.79 0.86
451 452 6.039382 CCATGAGTAGTGCAGTACAGTGTATA 59.961 42.308 28.82 10.47 32.79 1.47
452 453 5.163509 CCATGAGTAGTGCAGTACAGTGTAT 60.164 44.000 28.82 10.92 32.79 2.29
453 454 4.157840 CCATGAGTAGTGCAGTACAGTGTA 59.842 45.833 28.82 13.12 32.79 2.90
454 455 3.056536 CCATGAGTAGTGCAGTACAGTGT 60.057 47.826 28.82 11.95 32.79 3.55
455 456 3.193479 TCCATGAGTAGTGCAGTACAGTG 59.807 47.826 28.82 22.32 32.79 3.66
456 457 3.193691 GTCCATGAGTAGTGCAGTACAGT 59.806 47.826 28.82 12.97 35.57 3.55
457 458 3.732169 CGTCCATGAGTAGTGCAGTACAG 60.732 52.174 28.82 16.84 0.00 2.74
458 459 2.163613 CGTCCATGAGTAGTGCAGTACA 59.836 50.000 28.82 13.33 0.00 2.90
459 460 2.798680 CGTCCATGAGTAGTGCAGTAC 58.201 52.381 21.85 21.85 0.00 2.73
460 461 1.134367 GCGTCCATGAGTAGTGCAGTA 59.866 52.381 0.00 0.00 0.00 2.74
461 462 0.108615 GCGTCCATGAGTAGTGCAGT 60.109 55.000 0.00 0.00 0.00 4.40
462 463 0.108662 TGCGTCCATGAGTAGTGCAG 60.109 55.000 0.00 0.00 0.00 4.41
463 464 0.536724 ATGCGTCCATGAGTAGTGCA 59.463 50.000 0.00 0.00 35.10 4.57
464 465 2.398498 CTATGCGTCCATGAGTAGTGC 58.602 52.381 0.00 0.00 32.85 4.40
465 466 2.398498 GCTATGCGTCCATGAGTAGTG 58.602 52.381 0.00 0.00 32.85 2.74
466 467 2.802787 GCTATGCGTCCATGAGTAGT 57.197 50.000 0.00 0.00 32.85 2.73
478 479 6.635173 ACTGATTGAGTATCCCGCTATGCG 62.635 50.000 4.87 4.87 42.11 4.73
479 480 3.257393 CTGATTGAGTATCCCGCTATGC 58.743 50.000 0.00 0.00 31.87 3.14
480 481 4.527509 ACTGATTGAGTATCCCGCTATG 57.472 45.455 0.00 0.00 30.86 2.23
490 491 8.874156 AGCTATGAAATGGATACTGATTGAGTA 58.126 33.333 0.00 0.00 41.57 2.59
491 492 7.660617 CAGCTATGAAATGGATACTGATTGAGT 59.339 37.037 0.00 0.00 38.88 3.41
492 493 7.119407 CCAGCTATGAAATGGATACTGATTGAG 59.881 40.741 0.00 0.00 36.09 3.02
493 494 6.938596 CCAGCTATGAAATGGATACTGATTGA 59.061 38.462 0.00 0.00 36.09 2.57
494 495 6.938596 TCCAGCTATGAAATGGATACTGATTG 59.061 38.462 0.00 0.00 38.19 2.67
495 496 6.939163 GTCCAGCTATGAAATGGATACTGATT 59.061 38.462 0.00 0.00 44.59 2.57
496 497 6.471146 GTCCAGCTATGAAATGGATACTGAT 58.529 40.000 0.00 0.00 44.59 2.90
497 498 5.509670 CGTCCAGCTATGAAATGGATACTGA 60.510 44.000 0.00 0.00 44.59 3.41
498 499 4.687948 CGTCCAGCTATGAAATGGATACTG 59.312 45.833 0.00 0.00 44.59 2.74
499 500 4.262635 CCGTCCAGCTATGAAATGGATACT 60.263 45.833 0.00 0.00 44.59 2.12
500 501 3.997021 CCGTCCAGCTATGAAATGGATAC 59.003 47.826 0.00 0.00 44.59 2.24
501 502 3.646162 ACCGTCCAGCTATGAAATGGATA 59.354 43.478 0.00 0.00 44.59 2.59
502 503 2.439507 ACCGTCCAGCTATGAAATGGAT 59.560 45.455 0.00 0.00 44.59 3.41
503 504 1.837439 ACCGTCCAGCTATGAAATGGA 59.163 47.619 0.00 0.00 40.80 3.41
504 505 1.942657 CACCGTCCAGCTATGAAATGG 59.057 52.381 0.00 0.00 35.30 3.16
505 506 1.942657 CCACCGTCCAGCTATGAAATG 59.057 52.381 0.00 0.00 0.00 2.32
506 507 1.559682 ACCACCGTCCAGCTATGAAAT 59.440 47.619 0.00 0.00 0.00 2.17
507 508 0.981183 ACCACCGTCCAGCTATGAAA 59.019 50.000 0.00 0.00 0.00 2.69
508 509 1.479323 GTACCACCGTCCAGCTATGAA 59.521 52.381 0.00 0.00 0.00 2.57
509 510 1.108776 GTACCACCGTCCAGCTATGA 58.891 55.000 0.00 0.00 0.00 2.15
510 511 0.821517 TGTACCACCGTCCAGCTATG 59.178 55.000 0.00 0.00 0.00 2.23
511 512 0.822164 GTGTACCACCGTCCAGCTAT 59.178 55.000 0.00 0.00 0.00 2.97
512 513 0.540133 TGTGTACCACCGTCCAGCTA 60.540 55.000 0.00 0.00 32.73 3.32
513 514 1.404479 TTGTGTACCACCGTCCAGCT 61.404 55.000 0.00 0.00 32.73 4.24
514 515 0.321298 ATTGTGTACCACCGTCCAGC 60.321 55.000 0.00 0.00 32.73 4.85
515 516 2.178912 AATTGTGTACCACCGTCCAG 57.821 50.000 0.00 0.00 32.73 3.86
516 517 3.766068 TTAATTGTGTACCACCGTCCA 57.234 42.857 0.00 0.00 32.73 4.02
517 518 5.422145 AGTATTAATTGTGTACCACCGTCC 58.578 41.667 0.00 0.00 32.73 4.79
518 519 6.335777 AGAGTATTAATTGTGTACCACCGTC 58.664 40.000 0.00 0.00 32.73 4.79
519 520 6.290294 AGAGTATTAATTGTGTACCACCGT 57.710 37.500 0.00 0.00 32.73 4.83
520 521 8.706492 TTTAGAGTATTAATTGTGTACCACCG 57.294 34.615 0.00 0.00 32.73 4.94
546 547 9.135189 TGGAGGAAGTATATAGCGTTTAACTAA 57.865 33.333 0.00 0.00 0.00 2.24
547 548 8.696043 TGGAGGAAGTATATAGCGTTTAACTA 57.304 34.615 0.00 0.00 0.00 2.24
548 549 7.592885 TGGAGGAAGTATATAGCGTTTAACT 57.407 36.000 0.00 0.00 0.00 2.24
549 550 8.828688 AATGGAGGAAGTATATAGCGTTTAAC 57.171 34.615 0.00 0.00 0.00 2.01
550 551 7.811236 CGAATGGAGGAAGTATATAGCGTTTAA 59.189 37.037 0.00 0.00 0.00 1.52
551 552 7.175467 TCGAATGGAGGAAGTATATAGCGTTTA 59.825 37.037 0.00 0.00 0.00 2.01
552 553 6.015688 TCGAATGGAGGAAGTATATAGCGTTT 60.016 38.462 0.00 0.00 0.00 3.60
553 554 5.475909 TCGAATGGAGGAAGTATATAGCGTT 59.524 40.000 0.00 0.00 0.00 4.84
554 555 5.008331 TCGAATGGAGGAAGTATATAGCGT 58.992 41.667 0.00 0.00 0.00 5.07
555 556 5.562506 TCGAATGGAGGAAGTATATAGCG 57.437 43.478 0.00 0.00 0.00 4.26
556 557 8.779354 ATTTTCGAATGGAGGAAGTATATAGC 57.221 34.615 0.00 0.00 0.00 2.97
560 561 9.542462 CAAGTATTTTCGAATGGAGGAAGTATA 57.458 33.333 0.00 0.00 0.00 1.47
561 562 8.047310 ACAAGTATTTTCGAATGGAGGAAGTAT 58.953 33.333 0.00 0.00 0.00 2.12
562 563 7.391620 ACAAGTATTTTCGAATGGAGGAAGTA 58.608 34.615 0.00 0.00 0.00 2.24
563 564 6.238648 ACAAGTATTTTCGAATGGAGGAAGT 58.761 36.000 0.00 0.00 0.00 3.01
564 565 6.371548 TGACAAGTATTTTCGAATGGAGGAAG 59.628 38.462 0.00 0.00 0.00 3.46
565 566 6.234920 TGACAAGTATTTTCGAATGGAGGAA 58.765 36.000 0.00 0.00 0.00 3.36
566 567 5.800296 TGACAAGTATTTTCGAATGGAGGA 58.200 37.500 0.00 0.00 0.00 3.71
567 568 6.316140 TGATGACAAGTATTTTCGAATGGAGG 59.684 38.462 0.00 0.00 0.00 4.30
568 569 7.307493 TGATGACAAGTATTTTCGAATGGAG 57.693 36.000 0.00 0.00 0.00 3.86
569 570 7.680442 TTGATGACAAGTATTTTCGAATGGA 57.320 32.000 0.00 0.00 0.00 3.41
570 571 8.741101 TTTTGATGACAAGTATTTTCGAATGG 57.259 30.769 0.00 0.00 37.32 3.16
654 655 9.158364 CGTCCGAAAATACTTATCATCAAAATG 57.842 33.333 0.00 0.00 0.00 2.32
655 656 9.104965 TCGTCCGAAAATACTTATCATCAAAAT 57.895 29.630 0.00 0.00 0.00 1.82
656 657 8.481974 TCGTCCGAAAATACTTATCATCAAAA 57.518 30.769 0.00 0.00 0.00 2.44
657 658 8.481974 TTCGTCCGAAAATACTTATCATCAAA 57.518 30.769 0.00 0.00 0.00 2.69
658 659 7.223971 CCTTCGTCCGAAAATACTTATCATCAA 59.776 37.037 3.52 0.00 33.34 2.57
659 660 6.700081 CCTTCGTCCGAAAATACTTATCATCA 59.300 38.462 3.52 0.00 33.34 3.07
660 661 6.145696 CCCTTCGTCCGAAAATACTTATCATC 59.854 42.308 3.52 0.00 33.34 2.92
661 662 5.989777 CCCTTCGTCCGAAAATACTTATCAT 59.010 40.000 3.52 0.00 33.34 2.45
662 663 5.127519 TCCCTTCGTCCGAAAATACTTATCA 59.872 40.000 3.52 0.00 33.34 2.15
663 664 5.594926 TCCCTTCGTCCGAAAATACTTATC 58.405 41.667 3.52 0.00 33.34 1.75
664 665 5.128335 ACTCCCTTCGTCCGAAAATACTTAT 59.872 40.000 3.52 0.00 33.34 1.73
665 666 4.463891 ACTCCCTTCGTCCGAAAATACTTA 59.536 41.667 3.52 0.00 33.34 2.24
666 667 3.260128 ACTCCCTTCGTCCGAAAATACTT 59.740 43.478 3.52 0.00 33.34 2.24
667 668 2.830321 ACTCCCTTCGTCCGAAAATACT 59.170 45.455 3.52 0.00 33.34 2.12
668 669 3.242549 ACTCCCTTCGTCCGAAAATAC 57.757 47.619 3.52 0.00 33.34 1.89
669 670 6.906157 ATATACTCCCTTCGTCCGAAAATA 57.094 37.500 3.52 0.00 33.34 1.40
670 671 5.803237 ATATACTCCCTTCGTCCGAAAAT 57.197 39.130 3.52 0.00 33.34 1.82
671 672 5.829924 ACTATATACTCCCTTCGTCCGAAAA 59.170 40.000 3.52 0.00 33.34 2.29
672 673 5.380043 ACTATATACTCCCTTCGTCCGAAA 58.620 41.667 3.52 0.00 33.34 3.46
673 674 4.978099 ACTATATACTCCCTTCGTCCGAA 58.022 43.478 1.81 1.81 0.00 4.30
674 675 4.630644 ACTATATACTCCCTTCGTCCGA 57.369 45.455 0.00 0.00 0.00 4.55
675 676 7.271511 AGTATACTATATACTCCCTTCGTCCG 58.728 42.308 2.75 0.00 29.47 4.79
676 677 9.762933 CTAGTATACTATATACTCCCTTCGTCC 57.237 40.741 12.98 0.00 36.38 4.79
682 683 9.571823 TGGTGTCTAGTATACTATATACTCCCT 57.428 37.037 22.68 0.85 36.38 4.20
683 684 9.612066 GTGGTGTCTAGTATACTATATACTCCC 57.388 40.741 22.68 18.50 36.38 4.30
684 685 9.612066 GGTGGTGTCTAGTATACTATATACTCC 57.388 40.741 18.37 19.76 36.38 3.85
685 686 9.612066 GGGTGGTGTCTAGTATACTATATACTC 57.388 40.741 18.37 14.33 36.38 2.59
686 687 9.349041 AGGGTGGTGTCTAGTATACTATATACT 57.651 37.037 18.37 12.04 38.32 2.12
687 688 9.393512 CAGGGTGGTGTCTAGTATACTATATAC 57.606 40.741 12.98 13.30 0.00 1.47
688 689 9.342736 TCAGGGTGGTGTCTAGTATACTATATA 57.657 37.037 12.98 2.11 0.00 0.86
689 690 8.228353 TCAGGGTGGTGTCTAGTATACTATAT 57.772 38.462 12.98 0.00 0.00 0.86
690 691 7.256944 CCTCAGGGTGGTGTCTAGTATACTATA 60.257 44.444 12.98 3.51 0.00 1.31
691 692 6.467484 CCTCAGGGTGGTGTCTAGTATACTAT 60.467 46.154 12.98 0.00 0.00 2.12
692 693 5.163120 CCTCAGGGTGGTGTCTAGTATACTA 60.163 48.000 12.05 12.05 0.00 1.82
693 694 4.386536 CCTCAGGGTGGTGTCTAGTATACT 60.387 50.000 10.87 10.87 0.00 2.12
694 695 3.890147 CCTCAGGGTGGTGTCTAGTATAC 59.110 52.174 0.00 0.00 0.00 1.47
695 696 3.117246 CCCTCAGGGTGGTGTCTAGTATA 60.117 52.174 0.00 0.00 38.25 1.47
696 697 2.359355 CCCTCAGGGTGGTGTCTAGTAT 60.359 54.545 0.00 0.00 38.25 2.12
697 698 1.006758 CCCTCAGGGTGGTGTCTAGTA 59.993 57.143 0.00 0.00 38.25 1.82
698 699 0.252284 CCCTCAGGGTGGTGTCTAGT 60.252 60.000 0.00 0.00 38.25 2.57
699 700 2.596776 CCCTCAGGGTGGTGTCTAG 58.403 63.158 0.00 0.00 38.25 2.43
700 701 4.887957 CCCTCAGGGTGGTGTCTA 57.112 61.111 0.00 0.00 38.25 2.59
712 713 5.942977 TTGAGTATCCCTCTATACCCTCA 57.057 43.478 0.00 0.00 41.11 3.86
713 714 8.896722 TTAATTGAGTATCCCTCTATACCCTC 57.103 38.462 0.00 0.00 41.11 4.30
732 733 8.964476 AACACAGGATACAGGAGTATTAATTG 57.036 34.615 0.00 0.00 40.95 2.32
752 753 5.394224 TGAGTATCCACGTCATTAACACA 57.606 39.130 0.00 0.00 0.00 3.72
753 754 6.903883 ATTGAGTATCCACGTCATTAACAC 57.096 37.500 0.00 0.00 0.00 3.32
760 765 8.308931 GGGTATTATAATTGAGTATCCACGTCA 58.691 37.037 2.68 0.00 0.00 4.35
779 784 9.930158 ATGCTTCTAACCAATTTTAGGGTATTA 57.070 29.630 0.00 0.00 36.05 0.98
780 785 8.838649 ATGCTTCTAACCAATTTTAGGGTATT 57.161 30.769 0.00 0.00 36.05 1.89
819 824 5.733655 GCGTTCATGAGTAGTGCAGTACTAT 60.734 44.000 29.70 20.36 43.44 2.12
820 825 4.438336 GCGTTCATGAGTAGTGCAGTACTA 60.438 45.833 29.70 19.28 40.89 1.82
821 826 3.673594 GCGTTCATGAGTAGTGCAGTACT 60.674 47.826 29.99 29.99 43.56 2.73
843 848 8.470805 AGAGTATTAATTGAGTATCCCGCTATG 58.529 37.037 0.00 0.00 0.00 2.23
875 880 2.815647 GCCGTCCTGCTACACAGC 60.816 66.667 0.00 0.00 45.78 4.40
879 884 0.750546 AGTATCGCCGTCCTGCTACA 60.751 55.000 0.00 0.00 0.00 2.74
923 930 8.407064 GTGCAGGATAGTGTATATATAGGTGAC 58.593 40.741 0.00 0.00 0.00 3.67
924 931 8.336987 AGTGCAGGATAGTGTATATATAGGTGA 58.663 37.037 0.00 0.00 0.00 4.02
925 932 8.526667 AGTGCAGGATAGTGTATATATAGGTG 57.473 38.462 0.00 0.00 0.00 4.00
926 933 9.629878 GTAGTGCAGGATAGTGTATATATAGGT 57.370 37.037 0.00 0.00 0.00 3.08
936 945 1.405821 GCGAGTAGTGCAGGATAGTGT 59.594 52.381 0.00 0.00 0.00 3.55
953 962 7.506114 AGGTTAATTTTCCTATATGTCTGCGA 58.494 34.615 0.00 0.00 31.66 5.10
956 965 9.277783 CTGGAGGTTAATTTTCCTATATGTCTG 57.722 37.037 1.85 0.00 33.83 3.51
967 976 3.161866 TGGTGGCTGGAGGTTAATTTTC 58.838 45.455 0.00 0.00 0.00 2.29
968 977 3.252554 TGGTGGCTGGAGGTTAATTTT 57.747 42.857 0.00 0.00 0.00 1.82
969 978 2.990740 TGGTGGCTGGAGGTTAATTT 57.009 45.000 0.00 0.00 0.00 1.82
980 989 3.011566 TGGGTGTATTATTGGTGGCTG 57.988 47.619 0.00 0.00 0.00 4.85
984 993 2.627699 GGCCATGGGTGTATTATTGGTG 59.372 50.000 15.13 0.00 0.00 4.17
996 1005 2.670148 GGAGTCGAAGGCCATGGGT 61.670 63.158 15.13 0.00 0.00 4.51
1013 1022 2.825836 GGAGGCGCTCATGGTTGG 60.826 66.667 7.64 0.00 31.08 3.77
1015 1024 4.473520 CCGGAGGCGCTCATGGTT 62.474 66.667 7.64 0.00 46.14 3.67
1077 1086 3.188786 GTGATGCCAGCGTCGACC 61.189 66.667 10.58 2.76 34.87 4.79
1193 1205 1.890894 CTGACCACCTCCGATCGTT 59.109 57.895 15.09 0.00 0.00 3.85
1214 1241 0.179000 CTCCATAGCCGCTTTCACCT 59.821 55.000 0.00 0.00 0.00 4.00
1221 1248 0.179000 CCAGTTTCTCCATAGCCGCT 59.821 55.000 0.00 0.00 0.00 5.52
1237 1264 1.001641 CCACCAGGAAGAAGCCCAG 60.002 63.158 0.00 0.00 36.89 4.45
1272 1299 1.078848 GTTCGACATGGCTGCCTCT 60.079 57.895 21.03 4.24 0.00 3.69
1329 1356 0.338120 AGTAGAGCTCCTTGGCCTCT 59.662 55.000 10.93 0.00 0.00 3.69
1359 1386 1.982660 ACTTGACGTGTCTCTCCTCA 58.017 50.000 0.00 0.00 0.00 3.86
1509 1539 1.524165 CAGCTGCCTCATGAGCCTC 60.524 63.158 17.76 8.80 35.69 4.70
1530 1560 0.315568 CTATCCCGAAGAGGAAGCGG 59.684 60.000 0.00 0.00 45.00 5.52
1539 1569 1.067821 GCCTCAGACACTATCCCGAAG 59.932 57.143 0.00 0.00 0.00 3.79
1617 1647 1.035932 GGTAGTAGTGGCAGCCGAGA 61.036 60.000 7.03 0.00 0.00 4.04
1711 1741 2.610859 ACCGACAATCTGGGGCCT 60.611 61.111 0.84 0.00 0.00 5.19
1712 1742 2.438434 CACCGACAATCTGGGGCC 60.438 66.667 0.00 0.00 0.00 5.80
1714 1744 1.377202 CACCACCGACAATCTGGGG 60.377 63.158 0.00 0.00 0.00 4.96
1823 2029 1.284982 CTGGACGAACCGAACAGCTG 61.285 60.000 13.48 13.48 42.61 4.24
1834 2040 1.006571 GAGCGTTGTCCTGGACGAA 60.007 57.895 18.28 12.09 41.53 3.85
1920 3624 4.229876 GTCTATTTTGCACTGCTCAAACC 58.770 43.478 1.98 0.00 33.66 3.27
1953 3657 4.503910 TGGATCGACCACACATCTAAAAG 58.496 43.478 3.02 0.00 44.64 2.27
1965 3669 4.202315 ACATATCCGAAATTGGATCGACCA 60.202 41.667 5.43 3.02 45.80 4.02
1981 3685 7.545965 CCCGTGATAAAGAAGACATACATATCC 59.454 40.741 0.00 0.00 0.00 2.59
2000 3717 6.306199 TGATTGGATGAAATTATCCCGTGAT 58.694 36.000 5.03 0.00 44.93 3.06
2004 3721 4.082571 GGCTGATTGGATGAAATTATCCCG 60.083 45.833 5.03 0.00 44.93 5.14
2006 3723 6.395629 CATGGCTGATTGGATGAAATTATCC 58.604 40.000 0.83 0.83 45.59 2.59
2030 3747 5.904362 AAATAAGACTGAACAATGGAGCC 57.096 39.130 0.00 0.00 0.00 4.70
2059 3776 7.068702 TGCAAGGATTAAATGGTCCAGATATT 58.931 34.615 0.00 0.00 36.96 1.28
2078 3795 5.413499 CATTGGAGGTTCTATTTTGCAAGG 58.587 41.667 0.00 0.00 0.00 3.61
2095 3812 4.779696 TGTAGATACATTGCTGCATTGGA 58.220 39.130 23.54 18.15 0.00 3.53
2104 3821 3.309682 ACACGCACATGTAGATACATTGC 59.690 43.478 19.28 19.28 43.99 3.56
2141 3858 4.462508 TTGATGAGTCGCAGAGAGAAAT 57.537 40.909 0.00 0.00 36.95 2.17
2183 3941 1.598183 CGAGTAGCTATGTGAGGCGTG 60.598 57.143 0.00 0.00 0.00 5.34
2191 3949 1.749334 GCTGGCCCGAGTAGCTATGT 61.749 60.000 0.00 0.00 34.70 2.29
2207 3965 4.731612 AGTGCCACGAGCTCGCTG 62.732 66.667 34.83 28.00 44.23 5.18
2208 3966 4.731612 CAGTGCCACGAGCTCGCT 62.732 66.667 34.83 20.58 44.23 4.93
2210 3968 3.108289 CACAGTGCCACGAGCTCG 61.108 66.667 33.45 33.45 44.23 5.03
2211 3969 3.418068 GCACAGTGCCACGAGCTC 61.418 66.667 15.27 2.73 44.23 4.09
2252 4086 2.038837 GTCGGGAAAAGGAAGGCCG 61.039 63.158 0.00 0.00 39.96 6.13
2287 4121 2.532715 AAAGGGCAGGAGAGGGCA 60.533 61.111 0.00 0.00 0.00 5.36
2291 4125 0.182299 GGGATGAAAGGGCAGGAGAG 59.818 60.000 0.00 0.00 0.00 3.20
2318 4156 4.267690 TCGAGTAAGCATCAGCAAAATACG 59.732 41.667 0.00 0.00 45.49 3.06
2325 4163 3.525268 TGAATCGAGTAAGCATCAGCA 57.475 42.857 0.00 0.00 45.49 4.41
2380 4218 3.370103 CCCGGAAGCAGTAACCAAATAGA 60.370 47.826 0.73 0.00 0.00 1.98
2389 4246 0.470766 AACACACCCGGAAGCAGTAA 59.529 50.000 0.73 0.00 0.00 2.24
2392 4249 1.654220 CAAACACACCCGGAAGCAG 59.346 57.895 0.73 0.00 0.00 4.24
2399 4256 0.881118 CCTCAATCCAAACACACCCG 59.119 55.000 0.00 0.00 0.00 5.28
2401 4258 1.256812 CCCCTCAATCCAAACACACC 58.743 55.000 0.00 0.00 0.00 4.16
2402 4259 0.603065 GCCCCTCAATCCAAACACAC 59.397 55.000 0.00 0.00 0.00 3.82
2403 4260 0.541764 GGCCCCTCAATCCAAACACA 60.542 55.000 0.00 0.00 0.00 3.72
2404 4261 0.251787 AGGCCCCTCAATCCAAACAC 60.252 55.000 0.00 0.00 0.00 3.32
2405 4262 0.486879 AAGGCCCCTCAATCCAAACA 59.513 50.000 0.00 0.00 0.00 2.83
2408 4265 0.251742 CACAAGGCCCCTCAATCCAA 60.252 55.000 0.00 0.00 0.00 3.53
2409 4266 1.383799 CACAAGGCCCCTCAATCCA 59.616 57.895 0.00 0.00 0.00 3.41
2410 4267 0.251787 AACACAAGGCCCCTCAATCC 60.252 55.000 0.00 0.00 0.00 3.01
2411 4268 0.890683 CAACACAAGGCCCCTCAATC 59.109 55.000 0.00 0.00 0.00 2.67
2412 4269 0.188342 ACAACACAAGGCCCCTCAAT 59.812 50.000 0.00 0.00 0.00 2.57
2413 4270 0.754957 CACAACACAAGGCCCCTCAA 60.755 55.000 0.00 0.00 0.00 3.02
2414 4271 1.152777 CACAACACAAGGCCCCTCA 60.153 57.895 0.00 0.00 0.00 3.86
2415 4272 2.564721 GCACAACACAAGGCCCCTC 61.565 63.158 0.00 0.00 0.00 4.30
2418 4275 0.530431 CTTTGCACAACACAAGGCCC 60.530 55.000 0.00 0.00 0.00 5.80
2420 4277 1.134946 AGACTTTGCACAACACAAGGC 59.865 47.619 0.00 0.00 0.00 4.35
2424 4281 4.765273 TCTTCTAGACTTTGCACAACACA 58.235 39.130 0.00 0.00 0.00 3.72
2438 4295 5.386060 TGTCCAGAACTCAACTCTTCTAGA 58.614 41.667 0.00 0.00 0.00 2.43
2441 4298 5.359194 TTTGTCCAGAACTCAACTCTTCT 57.641 39.130 0.00 0.00 0.00 2.85
2444 4301 5.296151 TGATTTGTCCAGAACTCAACTCT 57.704 39.130 0.00 0.00 0.00 3.24
2448 4305 8.375506 AGTACTAATGATTTGTCCAGAACTCAA 58.624 33.333 0.00 0.00 0.00 3.02
2472 4330 9.609346 ACTGTACAACAATAAAAGTACTGAAGT 57.391 29.630 13.03 2.65 38.75 3.01
2477 4335 9.169592 ACACAACTGTACAACAATAAAAGTACT 57.830 29.630 0.00 0.00 38.09 2.73
2484 4342 8.160521 AGCATAACACAACTGTACAACAATAA 57.839 30.769 0.00 0.00 0.00 1.40
2517 4375 2.458620 AGTTCAGTACCAGCTAGGACC 58.541 52.381 8.91 0.00 41.22 4.46
2518 4376 4.500035 GCATAGTTCAGTACCAGCTAGGAC 60.500 50.000 8.91 0.00 41.22 3.85
2556 4414 7.412781 GCACATGAACAATTGACAAGTGAAAAA 60.413 33.333 29.29 5.31 35.99 1.94
2563 4421 3.887741 TCGCACATGAACAATTGACAAG 58.112 40.909 13.59 11.00 0.00 3.16
2585 4443 3.183574 CGACGAACTAAAGCATGACACAA 59.816 43.478 0.00 0.00 0.00 3.33
2601 4459 6.133392 GTGAATTTTTGAATGACTCGACGAA 58.867 36.000 0.00 0.00 0.00 3.85
2606 4464 5.439828 TGACGTGAATTTTTGAATGACTCG 58.560 37.500 0.00 0.00 0.00 4.18
2624 4482 8.556213 AATACCACATTAACTAACATTGACGT 57.444 30.769 0.00 0.00 0.00 4.34
2628 4486 9.710979 CGGTAAATACCACATTAACTAACATTG 57.289 33.333 10.10 0.00 46.80 2.82
2630 4488 9.669887 TTCGGTAAATACCACATTAACTAACAT 57.330 29.630 10.10 0.00 46.80 2.71
2631 4489 9.499479 TTTCGGTAAATACCACATTAACTAACA 57.501 29.630 10.10 0.00 46.80 2.41
2684 4542 4.260172 GCAACAAAAATTGGGTTCAGTTCG 60.260 41.667 0.00 0.00 34.12 3.95
2687 4545 4.213564 TGCAACAAAAATTGGGTTCAGT 57.786 36.364 0.00 0.00 34.12 3.41
2689 4547 4.521146 ACATGCAACAAAAATTGGGTTCA 58.479 34.783 0.00 0.00 34.12 3.18
2692 4550 3.129871 CGACATGCAACAAAAATTGGGT 58.870 40.909 0.00 0.00 34.12 4.51
2695 4553 7.949428 GGTTAATACGACATGCAACAAAAATTG 59.051 33.333 0.00 0.00 0.00 2.32
2696 4554 7.653713 TGGTTAATACGACATGCAACAAAAATT 59.346 29.630 0.00 0.00 0.00 1.82
2698 4556 6.504398 TGGTTAATACGACATGCAACAAAAA 58.496 32.000 0.00 0.00 0.00 1.94
2702 4560 5.182190 ACATTGGTTAATACGACATGCAACA 59.818 36.000 0.00 0.00 0.00 3.33
2710 4568 8.452534 TGGTTTTCATACATTGGTTAATACGAC 58.547 33.333 0.00 0.00 0.00 4.34
2742 4602 6.034898 CGGTTCGATTAGTACGGTTTATTGTT 59.965 38.462 0.00 0.00 0.00 2.83
2743 4603 5.516339 CGGTTCGATTAGTACGGTTTATTGT 59.484 40.000 0.00 0.00 0.00 2.71
2753 4613 7.985634 TTGGTTAATACGGTTCGATTAGTAC 57.014 36.000 0.00 0.00 0.00 2.73
2767 4627 8.460428 TGGGTGTTCGATTAATTTGGTTAATAC 58.540 33.333 0.00 0.00 41.82 1.89
2783 4643 0.539986 GAATAGCCCTGGGTGTTCGA 59.460 55.000 15.56 0.00 34.97 3.71
2791 4651 2.811873 GCTACCATGTGAATAGCCCTGG 60.812 54.545 0.00 0.00 36.18 4.45
2794 4654 2.638480 TGCTACCATGTGAATAGCCC 57.362 50.000 11.02 0.00 40.54 5.19
2815 4675 2.401351 GGGCGTATTTATCCTCACGTC 58.599 52.381 0.00 0.00 38.24 4.34
2816 4676 1.269413 CGGGCGTATTTATCCTCACGT 60.269 52.381 0.00 0.00 36.78 4.49
2817 4677 1.001048 TCGGGCGTATTTATCCTCACG 60.001 52.381 0.00 0.00 37.45 4.35
2818 4678 2.806608 TCGGGCGTATTTATCCTCAC 57.193 50.000 0.00 0.00 0.00 3.51
2819 4679 3.556213 CCATTCGGGCGTATTTATCCTCA 60.556 47.826 0.00 0.00 0.00 3.86
2820 4680 3.000727 CCATTCGGGCGTATTTATCCTC 58.999 50.000 0.00 0.00 0.00 3.71
2821 4681 2.370849 ACCATTCGGGCGTATTTATCCT 59.629 45.455 0.00 0.00 42.05 3.24
2822 4682 2.774687 ACCATTCGGGCGTATTTATCC 58.225 47.619 0.00 0.00 42.05 2.59
2823 4683 3.930848 CCTACCATTCGGGCGTATTTATC 59.069 47.826 0.00 0.00 42.05 1.75
2824 4684 3.579586 TCCTACCATTCGGGCGTATTTAT 59.420 43.478 0.00 0.00 42.05 1.40
2825 4685 2.964464 TCCTACCATTCGGGCGTATTTA 59.036 45.455 0.00 0.00 42.05 1.40
2826 4686 1.764134 TCCTACCATTCGGGCGTATTT 59.236 47.619 0.00 0.00 42.05 1.40
2827 4687 1.416243 TCCTACCATTCGGGCGTATT 58.584 50.000 0.00 0.00 42.05 1.89
2828 4688 1.275291 CATCCTACCATTCGGGCGTAT 59.725 52.381 0.00 0.00 42.05 3.06
2831 4691 0.677288 TACATCCTACCATTCGGGCG 59.323 55.000 0.00 0.00 42.05 6.13
2832 4692 3.418684 AATACATCCTACCATTCGGGC 57.581 47.619 0.00 0.00 42.05 6.13
2833 4693 6.292923 TGTAAAATACATCCTACCATTCGGG 58.707 40.000 0.00 0.00 36.80 5.14
2850 4714 4.839121 TGTGGAAGAGGCGTATGTAAAAT 58.161 39.130 0.00 0.00 0.00 1.82
2855 4719 3.305403 CGATATGTGGAAGAGGCGTATGT 60.305 47.826 0.00 0.00 0.00 2.29
2859 4723 1.112113 ACGATATGTGGAAGAGGCGT 58.888 50.000 0.00 0.00 0.00 5.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.