Multiple sequence alignment - TraesCS4A01G313200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G313200 chr4A 100.000 3716 0 0 1 3716 603982915 603979200 0.000000e+00 6863.0
1 TraesCS4A01G313200 chr5D 84.781 3154 184 133 591 3597 560433768 560430764 0.000000e+00 2892.0
2 TraesCS4A01G313200 chr5D 83.096 633 57 13 1 597 560434778 560434160 7.070000e-147 531.0
3 TraesCS4A01G313200 chr5B 91.741 1235 62 18 814 2027 710786825 710785610 0.000000e+00 1679.0
4 TraesCS4A01G313200 chr5B 78.414 908 72 45 2492 3318 710785174 710784310 9.340000e-131 477.0
5 TraesCS4A01G313200 chr5B 90.064 312 22 5 1 311 710788066 710787763 2.690000e-106 396.0
6 TraesCS4A01G313200 chr5B 85.044 341 15 17 2057 2387 710785536 710785222 7.750000e-82 315.0
7 TraesCS4A01G313200 chr5B 86.294 197 18 8 3408 3597 710784162 710783968 4.860000e-49 206.0
8 TraesCS4A01G313200 chr5B 88.636 88 7 2 591 678 316709130 316709046 1.830000e-18 104.0
9 TraesCS4A01G313200 chr5B 88.636 88 7 2 591 678 522942443 522942359 1.830000e-18 104.0
10 TraesCS4A01G313200 chr5B 87.013 77 8 1 516 592 710787558 710787484 6.610000e-13 86.1
11 TraesCS4A01G313200 chr2D 79.316 643 114 16 1020 1657 5747634 5748262 2.050000e-117 433.0
12 TraesCS4A01G313200 chr2D 91.489 47 2 2 2399 2443 79051049 79051003 3.100000e-06 63.9
13 TraesCS4A01G313200 chr2A 79.444 647 106 21 1020 1657 4293761 4293133 2.050000e-117 433.0
14 TraesCS4A01G313200 chr2A 88.636 88 7 1 591 678 670457751 670457835 1.830000e-18 104.0
15 TraesCS4A01G313200 chr7A 89.773 88 6 2 591 678 524701401 524701317 3.920000e-20 110.0
16 TraesCS4A01G313200 chr6A 88.636 88 7 2 591 678 66426437 66426521 1.830000e-18 104.0
17 TraesCS4A01G313200 chr4D 87.778 90 7 2 590 678 430739320 430739234 6.570000e-18 102.0
18 TraesCS4A01G313200 chr4B 87.778 90 7 2 590 678 195292778 195292864 6.570000e-18 102.0
19 TraesCS4A01G313200 chr2B 80.714 140 19 5 591 727 151653818 151653684 6.570000e-18 102.0
20 TraesCS4A01G313200 chr2B 86.207 58 4 4 2400 2454 161021433 161021489 4.010000e-05 60.2
21 TraesCS4A01G313200 chr3A 79.562 137 19 6 594 726 693616555 693616686 5.110000e-14 89.8
22 TraesCS4A01G313200 chr3A 91.667 48 3 1 2388 2435 265539884 265539838 8.610000e-07 65.8
23 TraesCS4A01G313200 chr7D 95.238 42 1 1 2394 2435 509501330 509501290 8.610000e-07 65.8
24 TraesCS4A01G313200 chr3D 91.667 48 3 1 2388 2435 206981395 206981441 8.610000e-07 65.8
25 TraesCS4A01G313200 chr3D 87.500 56 4 3 2400 2453 123018613 123018667 1.110000e-05 62.1
26 TraesCS4A01G313200 chr3B 91.667 48 3 1 2388 2435 284676032 284675986 8.610000e-07 65.8
27 TraesCS4A01G313200 chr3B 94.286 35 2 0 3641 3675 790644780 790644746 2.000000e-03 54.7
28 TraesCS4A01G313200 chr6D 91.489 47 2 2 2399 2443 273091492 273091446 3.100000e-06 63.9
29 TraesCS4A01G313200 chr1A 91.489 47 2 2 2399 2443 345300371 345300325 3.100000e-06 63.9
30 TraesCS4A01G313200 chr1D 92.500 40 3 0 3638 3677 233342723 233342684 1.440000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G313200 chr4A 603979200 603982915 3715 True 6863.000000 6863 100.000000 1 3716 1 chr4A.!!$R1 3715
1 TraesCS4A01G313200 chr5D 560430764 560434778 4014 True 1711.500000 2892 83.938500 1 3597 2 chr5D.!!$R1 3596
2 TraesCS4A01G313200 chr5B 710783968 710788066 4098 True 526.516667 1679 86.428333 1 3597 6 chr5B.!!$R3 3596
3 TraesCS4A01G313200 chr2D 5747634 5748262 628 False 433.000000 433 79.316000 1020 1657 1 chr2D.!!$F1 637
4 TraesCS4A01G313200 chr2A 4293133 4293761 628 True 433.000000 433 79.444000 1020 1657 1 chr2A.!!$R1 637

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
797 1422 0.033504 ATGGCGCTAATGTCCTACGG 59.966 55.0 7.64 0.0 0.0 4.02 F
876 1503 0.033991 TCTCCCTCTCTTCCTCACCG 60.034 60.0 0.00 0.0 0.0 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2692 3455 0.040603 GTCTCTGCTTGTTGCTGTGC 60.041 55.0 0.00 0.0 43.37 4.57 R
2745 3541 0.465097 CCGCTTGAGATCCATGCCTT 60.465 55.0 12.98 0.0 41.38 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 57 5.388225 ACATTGCAAAACAAGTAAAAGCG 57.612 34.783 1.71 0.00 42.87 4.68
80 81 6.967199 CGGGTTAGAAAAGCTCAATTATTGTC 59.033 38.462 4.77 0.00 33.51 3.18
84 86 6.428385 AGAAAAGCTCAATTATTGTCTCCG 57.572 37.500 4.77 0.00 0.00 4.63
108 110 2.866065 GCAATACCAACACAACCCAAGC 60.866 50.000 0.00 0.00 0.00 4.01
291 309 2.586792 GGCTCAACCGCCTCAGAT 59.413 61.111 0.00 0.00 46.63 2.90
292 310 1.522580 GGCTCAACCGCCTCAGATC 60.523 63.158 0.00 0.00 46.63 2.75
320 338 4.570369 ACTTGTTTTGGAAAGGCGATTTTG 59.430 37.500 0.00 0.00 0.00 2.44
327 345 3.687698 TGGAAAGGCGATTTTGTACTAGC 59.312 43.478 0.00 0.00 0.00 3.42
328 346 3.939592 GGAAAGGCGATTTTGTACTAGCT 59.060 43.478 0.00 0.00 0.00 3.32
329 347 5.114081 GGAAAGGCGATTTTGTACTAGCTA 58.886 41.667 0.00 0.00 0.00 3.32
330 348 5.234543 GGAAAGGCGATTTTGTACTAGCTAG 59.765 44.000 19.44 19.44 0.00 3.42
331 349 5.340439 AAGGCGATTTTGTACTAGCTAGT 57.660 39.130 28.50 28.50 40.24 2.57
334 352 4.430908 GCGATTTTGTACTAGCTAGTGGT 58.569 43.478 32.21 12.52 37.10 4.16
335 353 5.450965 GGCGATTTTGTACTAGCTAGTGGTA 60.451 44.000 32.21 17.19 37.10 3.25
336 354 5.686397 GCGATTTTGTACTAGCTAGTGGTAG 59.314 44.000 32.21 16.92 46.43 3.18
372 390 3.612860 CACAAGGAAAACCGATAGAGACG 59.387 47.826 0.00 0.00 39.76 4.18
380 398 2.526432 ACCGATAGAGACGCCCATATT 58.474 47.619 0.00 0.00 39.76 1.28
412 430 2.847327 ATGTTCACTGTCACCTCCTG 57.153 50.000 0.00 0.00 0.00 3.86
434 452 6.098409 CCTGTATACCTTGGGGCATACTATAG 59.902 46.154 0.00 0.00 40.68 1.31
491 528 4.038642 GGCTAGAGTGGAAGGAGTTAGATG 59.961 50.000 0.00 0.00 0.00 2.90
496 534 4.031611 AGTGGAAGGAGTTAGATGTACCC 58.968 47.826 0.00 0.00 0.00 3.69
503 541 4.411540 AGGAGTTAGATGTACCCGAGAGTA 59.588 45.833 0.00 0.00 0.00 2.59
543 612 7.951245 AGTGGAAGGAGTTAGATATACCTAAGG 59.049 40.741 0.00 0.00 30.06 2.69
559 628 6.605471 ACCTAAGGGTCAATTTGAAATTCC 57.395 37.500 0.00 0.21 43.38 3.01
564 633 5.147032 AGGGTCAATTTGAAATTCCAGTGA 58.853 37.500 0.00 0.00 0.00 3.41
577 646 8.602424 TGAAATTCCAGTGAAAGGAGTTAGATA 58.398 33.333 0.00 0.00 34.45 1.98
583 652 8.508601 TCCAGTGAAAGGAGTTAGATATACCTA 58.491 37.037 0.00 0.00 0.00 3.08
658 1146 6.882610 AAGCAAAATGAGTGAATCTACACA 57.117 33.333 0.00 0.00 42.45 3.72
659 1147 7.458409 AAGCAAAATGAGTGAATCTACACAT 57.542 32.000 0.00 0.00 42.45 3.21
692 1317 9.832445 ATGTCTATATACCGTGTGAAAATCTTT 57.168 29.630 0.00 0.00 0.00 2.52
700 1325 6.617879 ACCGTGTGAAAATCTTTATAAAGGC 58.382 36.000 22.11 9.59 36.67 4.35
701 1326 6.433093 ACCGTGTGAAAATCTTTATAAAGGCT 59.567 34.615 22.11 9.67 36.67 4.58
703 1328 8.455682 CCGTGTGAAAATCTTTATAAAGGCTTA 58.544 33.333 22.11 6.15 36.67 3.09
704 1329 9.274065 CGTGTGAAAATCTTTATAAAGGCTTAC 57.726 33.333 22.11 14.62 36.67 2.34
723 1348 9.674068 AGGCTTACTATTAAGAAAGAAAGGAAG 57.326 33.333 4.14 0.00 37.49 3.46
724 1349 9.451002 GGCTTACTATTAAGAAAGAAAGGAAGT 57.549 33.333 4.14 0.00 37.49 3.01
753 1378 5.104259 AGGACCTAAATGATGAAGGTGTC 57.896 43.478 3.90 0.00 43.69 3.67
760 1385 6.484643 CCTAAATGATGAAGGTGTCAATCGAT 59.515 38.462 0.00 0.00 40.50 3.59
764 1389 5.003160 TGATGAAGGTGTCAATCGATTGTT 58.997 37.500 31.49 20.74 40.50 2.83
765 1390 5.473162 TGATGAAGGTGTCAATCGATTGTTT 59.527 36.000 31.49 20.18 40.50 2.83
766 1391 5.356882 TGAAGGTGTCAATCGATTGTTTC 57.643 39.130 31.49 25.12 38.84 2.78
767 1392 4.215399 TGAAGGTGTCAATCGATTGTTTCC 59.785 41.667 31.49 27.79 38.84 3.13
768 1393 3.750371 AGGTGTCAATCGATTGTTTCCA 58.250 40.909 31.49 21.81 38.84 3.53
769 1394 3.753272 AGGTGTCAATCGATTGTTTCCAG 59.247 43.478 31.49 10.08 38.84 3.86
796 1421 2.325761 GTATGGCGCTAATGTCCTACG 58.674 52.381 7.64 0.00 0.00 3.51
797 1422 0.033504 ATGGCGCTAATGTCCTACGG 59.966 55.000 7.64 0.00 0.00 4.02
799 1424 0.318784 GGCGCTAATGTCCTACGGAG 60.319 60.000 7.64 0.00 29.39 4.63
801 1426 1.605710 GCGCTAATGTCCTACGGAGTA 59.394 52.381 0.00 0.00 45.11 2.59
803 1428 2.877168 CGCTAATGTCCTACGGAGTACT 59.123 50.000 0.00 0.00 45.11 2.73
804 1429 3.303857 CGCTAATGTCCTACGGAGTACTG 60.304 52.174 0.00 0.00 45.11 2.74
805 1430 3.550436 GCTAATGTCCTACGGAGTACTGC 60.550 52.174 0.00 0.73 45.11 4.40
806 1431 2.438800 ATGTCCTACGGAGTACTGCT 57.561 50.000 12.91 2.51 45.11 4.24
807 1432 3.572632 ATGTCCTACGGAGTACTGCTA 57.427 47.619 12.91 3.53 45.11 3.49
865 1492 1.673168 GCGCAAATGAATCTCCCTCT 58.327 50.000 0.30 0.00 0.00 3.69
866 1493 1.601430 GCGCAAATGAATCTCCCTCTC 59.399 52.381 0.30 0.00 0.00 3.20
867 1494 2.744494 GCGCAAATGAATCTCCCTCTCT 60.744 50.000 0.30 0.00 0.00 3.10
868 1495 3.539604 CGCAAATGAATCTCCCTCTCTT 58.460 45.455 0.00 0.00 0.00 2.85
869 1496 3.559242 CGCAAATGAATCTCCCTCTCTTC 59.441 47.826 0.00 0.00 0.00 2.87
870 1497 3.882288 GCAAATGAATCTCCCTCTCTTCC 59.118 47.826 0.00 0.00 0.00 3.46
871 1498 4.385088 GCAAATGAATCTCCCTCTCTTCCT 60.385 45.833 0.00 0.00 0.00 3.36
872 1499 5.367302 CAAATGAATCTCCCTCTCTTCCTC 58.633 45.833 0.00 0.00 0.00 3.71
873 1500 3.765432 TGAATCTCCCTCTCTTCCTCA 57.235 47.619 0.00 0.00 0.00 3.86
874 1501 3.370104 TGAATCTCCCTCTCTTCCTCAC 58.630 50.000 0.00 0.00 0.00 3.51
875 1502 2.470057 ATCTCCCTCTCTTCCTCACC 57.530 55.000 0.00 0.00 0.00 4.02
876 1503 0.033991 TCTCCCTCTCTTCCTCACCG 60.034 60.000 0.00 0.00 0.00 4.94
877 1504 1.000486 TCCCTCTCTTCCTCACCGG 60.000 63.158 0.00 0.00 0.00 5.28
904 1531 2.108425 CCTATTTAAAGAGGCCTCCCCC 59.892 54.545 29.54 4.88 29.54 5.40
953 1594 3.031013 CTCTTCCTCTTCTTCTCCCTCC 58.969 54.545 0.00 0.00 0.00 4.30
982 1652 1.002990 TGCTCCGACCGACTCTACA 60.003 57.895 0.00 0.00 0.00 2.74
983 1653 0.607217 TGCTCCGACCGACTCTACAA 60.607 55.000 0.00 0.00 0.00 2.41
984 1654 0.739561 GCTCCGACCGACTCTACAAT 59.260 55.000 0.00 0.00 0.00 2.71
985 1655 1.268640 GCTCCGACCGACTCTACAATC 60.269 57.143 0.00 0.00 0.00 2.67
986 1656 2.290464 CTCCGACCGACTCTACAATCT 58.710 52.381 0.00 0.00 0.00 2.40
987 1657 3.464907 CTCCGACCGACTCTACAATCTA 58.535 50.000 0.00 0.00 0.00 1.98
1386 2059 4.755614 GACGCTTCCGACGACGCT 62.756 66.667 0.64 0.00 38.29 5.07
1388 2061 4.753877 CGCTTCCGACGACGCTGA 62.754 66.667 0.64 0.00 38.29 4.26
1410 2083 0.674581 TCGTCACGGAGTACATCGGT 60.675 55.000 0.00 6.35 41.61 4.69
1413 2086 0.674581 TCACGGAGTACATCGGTCGT 60.675 55.000 11.50 0.00 41.61 4.34
1495 2177 3.646715 CCTTCAAGGGCCCGGTGA 61.647 66.667 23.21 23.21 0.00 4.02
1496 2178 2.045926 CTTCAAGGGCCCGGTGAG 60.046 66.667 24.90 17.39 0.00 3.51
1542 2224 2.125269 CCGTACAAGGGGAAGCGG 60.125 66.667 0.00 0.00 0.00 5.52
1710 2392 4.093291 CTGCTCCGCTTCCTGCCT 62.093 66.667 0.00 0.00 38.78 4.75
2061 2795 9.349713 ACTCCTACATGCTATAGATTATCTAGC 57.650 37.037 3.21 9.40 38.65 3.42
2114 2860 8.154856 AGTAGAGGTCTTAATTTAGTTGCACAA 58.845 33.333 0.00 0.00 0.00 3.33
2116 2862 7.820648 AGAGGTCTTAATTTAGTTGCACAATG 58.179 34.615 0.00 0.00 0.00 2.82
2119 2865 9.461312 AGGTCTTAATTTAGTTGCACAATGATA 57.539 29.630 0.00 0.00 0.00 2.15
2120 2866 9.722056 GGTCTTAATTTAGTTGCACAATGATAG 57.278 33.333 0.00 0.00 0.00 2.08
2121 2867 9.722056 GTCTTAATTTAGTTGCACAATGATAGG 57.278 33.333 0.00 0.00 0.00 2.57
2122 2868 8.405531 TCTTAATTTAGTTGCACAATGATAGGC 58.594 33.333 0.00 0.00 0.00 3.93
2123 2869 4.981806 TTTAGTTGCACAATGATAGGCC 57.018 40.909 0.00 0.00 0.00 5.19
2124 2870 1.382522 AGTTGCACAATGATAGGCCG 58.617 50.000 0.00 0.00 0.00 6.13
2125 2871 1.065491 AGTTGCACAATGATAGGCCGA 60.065 47.619 0.00 0.00 0.00 5.54
2126 2872 1.949525 GTTGCACAATGATAGGCCGAT 59.050 47.619 0.00 0.00 0.00 4.18
2127 2873 1.882912 TGCACAATGATAGGCCGATC 58.117 50.000 18.22 18.22 0.00 3.69
2128 2874 0.792640 GCACAATGATAGGCCGATCG 59.207 55.000 19.48 8.51 0.00 3.69
2129 2875 1.605457 GCACAATGATAGGCCGATCGA 60.605 52.381 18.66 10.19 0.00 3.59
2130 2876 2.332104 CACAATGATAGGCCGATCGAG 58.668 52.381 18.66 13.98 0.00 4.04
2182 2931 9.649167 TGAGTATCATATTGCACTCATCTTATG 57.351 33.333 6.12 0.00 42.56 1.90
2237 2986 6.000840 TGTGATTAGTTAGTGTGGAATGCAA 58.999 36.000 0.00 0.00 0.00 4.08
2240 2989 3.855689 AGTTAGTGTGGAATGCAATGC 57.144 42.857 0.00 0.00 0.00 3.56
2241 2990 3.156293 AGTTAGTGTGGAATGCAATGCA 58.844 40.909 11.44 11.44 44.86 3.96
2245 2994 1.395608 GTGTGGAATGCAATGCAATGC 59.604 47.619 19.99 19.99 43.62 3.56
2277 3029 3.639672 AGTTGTCATGATGATGAGGCA 57.360 42.857 0.00 0.00 39.36 4.75
2387 3139 5.650543 ACACAATCAACACTTGTTTTCTCC 58.349 37.500 0.00 0.00 34.69 3.71
2388 3140 5.043248 CACAATCAACACTTGTTTTCTCCC 58.957 41.667 0.00 0.00 34.69 4.30
2390 3142 3.662759 TCAACACTTGTTTTCTCCCCT 57.337 42.857 0.00 0.00 35.83 4.79
2394 3146 3.821748 ACACTTGTTTTCTCCCCTCTTC 58.178 45.455 0.00 0.00 0.00 2.87
2395 3147 3.149981 CACTTGTTTTCTCCCCTCTTCC 58.850 50.000 0.00 0.00 0.00 3.46
2396 3148 2.224548 ACTTGTTTTCTCCCCTCTTCCG 60.225 50.000 0.00 0.00 0.00 4.30
2397 3149 1.430992 TGTTTTCTCCCCTCTTCCGT 58.569 50.000 0.00 0.00 0.00 4.69
2398 3150 2.612000 TGTTTTCTCCCCTCTTCCGTA 58.388 47.619 0.00 0.00 0.00 4.02
2399 3151 3.178865 TGTTTTCTCCCCTCTTCCGTAT 58.821 45.455 0.00 0.00 0.00 3.06
2400 3152 4.355549 TGTTTTCTCCCCTCTTCCGTATA 58.644 43.478 0.00 0.00 0.00 1.47
2401 3153 4.161001 TGTTTTCTCCCCTCTTCCGTATAC 59.839 45.833 0.00 0.00 0.00 1.47
2402 3154 3.967467 TTCTCCCCTCTTCCGTATACT 57.033 47.619 0.56 0.00 0.00 2.12
2403 3155 3.225177 TCTCCCCTCTTCCGTATACTG 57.775 52.381 0.56 0.00 0.00 2.74
2404 3156 2.781757 TCTCCCCTCTTCCGTATACTGA 59.218 50.000 0.56 0.00 0.00 3.41
2405 3157 3.398292 TCTCCCCTCTTCCGTATACTGAT 59.602 47.826 0.56 0.00 0.00 2.90
2406 3158 3.759618 CTCCCCTCTTCCGTATACTGATC 59.240 52.174 0.56 0.00 0.00 2.92
2407 3159 3.398292 TCCCCTCTTCCGTATACTGATCT 59.602 47.826 0.56 0.00 0.00 2.75
2408 3160 4.600547 TCCCCTCTTCCGTATACTGATCTA 59.399 45.833 0.56 0.00 0.00 1.98
2409 3161 5.074102 TCCCCTCTTCCGTATACTGATCTAA 59.926 44.000 0.56 0.00 0.00 2.10
2410 3162 5.773680 CCCCTCTTCCGTATACTGATCTAAA 59.226 44.000 0.56 0.00 0.00 1.85
2411 3163 6.294620 CCCCTCTTCCGTATACTGATCTAAAC 60.295 46.154 0.56 0.00 0.00 2.01
2412 3164 6.372185 CCTCTTCCGTATACTGATCTAAACG 58.628 44.000 0.56 0.00 0.00 3.60
2413 3165 5.755813 TCTTCCGTATACTGATCTAAACGC 58.244 41.667 0.56 0.00 0.00 4.84
2414 3166 5.530171 TCTTCCGTATACTGATCTAAACGCT 59.470 40.000 0.56 0.00 0.00 5.07
2415 3167 5.354054 TCCGTATACTGATCTAAACGCTC 57.646 43.478 0.56 0.00 0.00 5.03
2416 3168 5.061853 TCCGTATACTGATCTAAACGCTCT 58.938 41.667 0.56 0.00 0.00 4.09
2417 3169 5.530171 TCCGTATACTGATCTAAACGCTCTT 59.470 40.000 0.56 0.00 0.00 2.85
2418 3170 6.707608 TCCGTATACTGATCTAAACGCTCTTA 59.292 38.462 0.56 0.00 0.00 2.10
2419 3171 7.389884 TCCGTATACTGATCTAAACGCTCTTAT 59.610 37.037 0.56 0.00 0.00 1.73
2420 3172 8.663025 CCGTATACTGATCTAAACGCTCTTATA 58.337 37.037 0.56 0.00 0.00 0.98
2434 3186 9.530633 AAACGCTCTTATATTAGTTTACAGAGG 57.469 33.333 0.00 0.00 31.14 3.69
2435 3187 8.461249 ACGCTCTTATATTAGTTTACAGAGGA 57.539 34.615 0.00 0.00 0.00 3.71
2438 3190 9.465985 GCTCTTATATTAGTTTACAGAGGACAC 57.534 37.037 0.00 0.00 0.00 3.67
2451 3214 4.593206 ACAGAGGACACAATTAGGTCTTGA 59.407 41.667 8.15 0.00 34.49 3.02
2487 3250 9.950680 AACTAACAAGAAGAATGTGTGTATTTG 57.049 29.630 0.00 0.00 0.00 2.32
2660 3423 1.287815 TCGCAACCGAGTACCACAG 59.712 57.895 0.00 0.00 38.82 3.66
2694 3457 3.883180 TCGCCGTCGATGATCGCA 61.883 61.111 10.45 0.00 40.21 5.10
2696 3459 2.582226 GCCGTCGATGATCGCACA 60.582 61.111 10.45 0.00 40.21 4.57
2699 3462 1.873572 CGTCGATGATCGCACAGCA 60.874 57.895 10.45 0.00 40.21 4.41
2740 3536 4.499696 CCTGAATCCTGAACCAACAACAAC 60.500 45.833 0.00 0.00 0.00 3.32
2742 3538 4.648762 TGAATCCTGAACCAACAACAACAT 59.351 37.500 0.00 0.00 0.00 2.71
2745 3541 2.159128 CCTGAACCAACAACAACATGCA 60.159 45.455 0.00 0.00 0.00 3.96
2794 3608 1.586422 TGCTTCACTGCTTCAGACAC 58.414 50.000 0.29 0.00 35.18 3.67
2903 3743 0.460311 AGATGAACCACCGGATCGAC 59.540 55.000 9.46 0.00 0.00 4.20
2904 3744 0.174845 GATGAACCACCGGATCGACA 59.825 55.000 9.46 2.86 0.00 4.35
2905 3745 0.830648 ATGAACCACCGGATCGACAT 59.169 50.000 9.46 5.39 0.00 3.06
2906 3746 0.108377 TGAACCACCGGATCGACATG 60.108 55.000 9.46 0.00 0.00 3.21
2907 3747 0.810031 GAACCACCGGATCGACATGG 60.810 60.000 9.46 5.84 36.46 3.66
2917 3761 4.261867 CCGGATCGACATGGTATTAACAGA 60.262 45.833 0.00 0.00 0.00 3.41
2968 3812 1.040646 TTTTGGCGTGTTTATGGGCA 58.959 45.000 0.00 0.00 34.16 5.36
2972 3816 1.241315 GGCGTGTTTATGGGCACTGT 61.241 55.000 0.00 0.00 33.78 3.55
2978 3822 4.513442 GTGTTTATGGGCACTGTATCTGA 58.487 43.478 0.00 0.00 33.22 3.27
2985 3829 1.797046 GGCACTGTATCTGATGCATCG 59.203 52.381 21.34 15.63 39.92 3.84
3032 3881 9.743057 CTTCTCACTCTCTAATGTAATGTAAGG 57.257 37.037 0.00 0.00 0.00 2.69
3033 3882 9.475620 TTCTCACTCTCTAATGTAATGTAAGGA 57.524 33.333 0.00 0.00 0.00 3.36
3034 3883 9.475620 TCTCACTCTCTAATGTAATGTAAGGAA 57.524 33.333 0.00 0.00 0.00 3.36
3052 3901 3.133721 AGGAAATGTACAGCTGAGCTAGG 59.866 47.826 23.35 0.00 36.40 3.02
3104 3953 3.801050 CAGTGACTGTGCTCTGCATATAC 59.199 47.826 4.01 0.00 41.91 1.47
3105 3954 3.703556 AGTGACTGTGCTCTGCATATACT 59.296 43.478 0.00 0.00 41.91 2.12
3106 3955 4.047822 GTGACTGTGCTCTGCATATACTC 58.952 47.826 0.00 0.00 41.91 2.59
3107 3956 3.068732 TGACTGTGCTCTGCATATACTCC 59.931 47.826 0.00 0.00 41.91 3.85
3108 3957 3.303938 ACTGTGCTCTGCATATACTCCT 58.696 45.455 0.00 0.00 41.91 3.69
3109 3958 4.474394 ACTGTGCTCTGCATATACTCCTA 58.526 43.478 0.00 0.00 41.91 2.94
3110 3959 4.279671 ACTGTGCTCTGCATATACTCCTAC 59.720 45.833 0.00 0.00 41.91 3.18
3111 3960 4.474394 TGTGCTCTGCATATACTCCTACT 58.526 43.478 0.00 0.00 41.91 2.57
3112 3961 4.279420 TGTGCTCTGCATATACTCCTACTG 59.721 45.833 0.00 0.00 41.91 2.74
3113 3962 4.279671 GTGCTCTGCATATACTCCTACTGT 59.720 45.833 0.00 0.00 41.91 3.55
3114 3963 5.473846 GTGCTCTGCATATACTCCTACTGTA 59.526 44.000 0.00 0.00 41.91 2.74
3118 3967 8.740906 GCTCTGCATATACTCCTACTGTAATAA 58.259 37.037 0.00 0.00 0.00 1.40
3133 3986 3.871006 TGTAATAAATCTGCTGCTGACCG 59.129 43.478 11.54 0.00 0.00 4.79
3134 3987 2.988010 ATAAATCTGCTGCTGACCGA 57.012 45.000 11.54 0.47 0.00 4.69
3135 3988 2.010145 TAAATCTGCTGCTGACCGAC 57.990 50.000 11.54 0.00 0.00 4.79
3136 3989 0.674895 AAATCTGCTGCTGACCGACC 60.675 55.000 11.54 0.00 0.00 4.79
3153 4011 1.604278 GACCTGCACCTTGTTCAGAAC 59.396 52.381 6.32 6.32 28.74 3.01
3177 4035 2.935201 GAGTGACCTAGCTTCAATGCTG 59.065 50.000 0.00 0.00 43.87 4.41
3178 4036 1.399791 GTGACCTAGCTTCAATGCTGC 59.600 52.381 0.00 0.00 43.87 5.25
3183 4041 1.033746 TAGCTTCAATGCTGCCTGGC 61.034 55.000 12.87 12.87 43.87 4.85
3186 4044 0.963856 CTTCAATGCTGCCTGGCTGA 60.964 55.000 27.16 15.71 0.00 4.26
3187 4045 1.246056 TTCAATGCTGCCTGGCTGAC 61.246 55.000 27.16 18.26 0.00 3.51
3188 4046 1.677966 CAATGCTGCCTGGCTGACT 60.678 57.895 27.16 11.42 0.00 3.41
3226 4089 1.825090 TGATTGGTGGTGATGCTGAC 58.175 50.000 0.00 0.00 0.00 3.51
3227 4090 1.073603 TGATTGGTGGTGATGCTGACA 59.926 47.619 0.00 0.00 0.00 3.58
3265 4132 3.614092 TCATGAGCTCCAAATCAACTCC 58.386 45.455 12.15 0.00 0.00 3.85
3266 4133 3.009363 TCATGAGCTCCAAATCAACTCCA 59.991 43.478 12.15 0.00 0.00 3.86
3297 4164 1.815613 TCTCTCTCTTGCTGTTCCTCG 59.184 52.381 0.00 0.00 0.00 4.63
3301 4168 0.514691 CTCTTGCTGTTCCTCGCAAC 59.485 55.000 0.00 0.00 40.84 4.17
3302 4169 0.106708 TCTTGCTGTTCCTCGCAACT 59.893 50.000 0.00 0.00 40.84 3.16
3303 4170 0.514691 CTTGCTGTTCCTCGCAACTC 59.485 55.000 0.00 0.00 40.84 3.01
3304 4171 1.221466 TTGCTGTTCCTCGCAACTCG 61.221 55.000 0.00 0.00 40.84 4.18
3305 4172 3.016474 GCTGTTCCTCGCAACTCGC 62.016 63.158 0.00 0.00 38.27 5.03
3317 4184 0.321671 CAACTCGCAAGGAAGGAGGA 59.678 55.000 0.00 0.00 38.47 3.71
3318 4185 1.065854 CAACTCGCAAGGAAGGAGGAT 60.066 52.381 0.00 0.00 38.47 3.24
3320 4187 0.813210 CTCGCAAGGAAGGAGGATGC 60.813 60.000 0.00 0.00 38.47 3.91
3321 4188 1.222936 CGCAAGGAAGGAGGATGCT 59.777 57.895 0.00 0.00 40.15 3.79
3340 4236 0.461693 TTTGCTTGCTTTGGTGCCAC 60.462 50.000 0.00 0.00 0.00 5.01
3370 4278 3.006940 TCTCATTGATTTGGGTACGTGC 58.993 45.455 0.00 0.00 0.00 5.34
3388 4296 1.066858 TGCGATCTGTTCCTGTTCCTC 60.067 52.381 0.00 0.00 0.00 3.71
3391 4299 3.257393 CGATCTGTTCCTGTTCCTCTTG 58.743 50.000 0.00 0.00 0.00 3.02
3410 4336 0.179018 GTTGGTCCACTCACTGGCTT 60.179 55.000 0.00 0.00 40.39 4.35
3424 4350 1.002069 TGGCTTCCATGGATTCAGGT 58.998 50.000 17.06 0.00 0.00 4.00
3425 4351 1.358787 TGGCTTCCATGGATTCAGGTT 59.641 47.619 17.06 0.00 0.00 3.50
3432 4358 1.285962 CATGGATTCAGGTTCAGGGGT 59.714 52.381 0.00 0.00 0.00 4.95
3442 4368 1.676014 GGTTCAGGGGTCATTCACTCG 60.676 57.143 0.00 0.00 0.00 4.18
3459 4385 1.448540 CGTCCATGTGTCCTGCTCC 60.449 63.158 0.00 0.00 0.00 4.70
3467 4393 0.320247 GTGTCCTGCTCCACAGTCTG 60.320 60.000 0.00 0.00 45.68 3.51
3582 4522 2.636893 ACAGATCATCATCAGCCCTACC 59.363 50.000 0.00 0.00 0.00 3.18
3585 4525 2.180946 TCATCATCAGCCCTACCACT 57.819 50.000 0.00 0.00 0.00 4.00
3587 4527 3.653164 TCATCATCAGCCCTACCACTAA 58.347 45.455 0.00 0.00 0.00 2.24
3592 4532 1.486310 TCAGCCCTACCACTAATGCAG 59.514 52.381 0.00 0.00 0.00 4.41
3602 4542 2.566833 ACTAATGCAGTGCAGGTGAA 57.433 45.000 24.20 5.78 43.65 3.18
3603 4543 2.154462 ACTAATGCAGTGCAGGTGAAC 58.846 47.619 24.20 0.00 43.65 3.18
3604 4544 2.153645 CTAATGCAGTGCAGGTGAACA 58.846 47.619 24.20 0.00 43.65 3.18
3605 4545 1.401761 AATGCAGTGCAGGTGAACAA 58.598 45.000 24.20 0.00 43.65 2.83
3606 4546 1.401761 ATGCAGTGCAGGTGAACAAA 58.598 45.000 24.20 0.00 43.65 2.83
3607 4547 0.740149 TGCAGTGCAGGTGAACAAAG 59.260 50.000 15.37 0.00 33.32 2.77
3608 4548 1.024271 GCAGTGCAGGTGAACAAAGA 58.976 50.000 11.09 0.00 0.00 2.52
3609 4549 1.610522 GCAGTGCAGGTGAACAAAGAT 59.389 47.619 11.09 0.00 0.00 2.40
3610 4550 2.351157 GCAGTGCAGGTGAACAAAGATC 60.351 50.000 11.09 0.00 0.00 2.75
3611 4551 3.144506 CAGTGCAGGTGAACAAAGATCT 58.855 45.455 0.00 0.00 0.00 2.75
3612 4552 3.058432 CAGTGCAGGTGAACAAAGATCTG 60.058 47.826 0.00 0.00 0.00 2.90
3613 4553 2.227388 GTGCAGGTGAACAAAGATCTGG 59.773 50.000 0.00 0.00 0.00 3.86
3614 4554 2.106338 TGCAGGTGAACAAAGATCTGGA 59.894 45.455 0.00 0.00 0.00 3.86
3615 4555 2.485814 GCAGGTGAACAAAGATCTGGAC 59.514 50.000 0.00 0.00 0.00 4.02
3616 4556 3.743521 CAGGTGAACAAAGATCTGGACA 58.256 45.455 0.00 0.00 0.00 4.02
3617 4557 3.750130 CAGGTGAACAAAGATCTGGACAG 59.250 47.826 0.00 0.00 0.00 3.51
3618 4558 3.648067 AGGTGAACAAAGATCTGGACAGA 59.352 43.478 4.26 4.26 42.37 3.41
3629 4569 2.739943 TCTGGACAGATAGACAGGTGG 58.260 52.381 0.00 0.00 31.41 4.61
3630 4570 1.759445 CTGGACAGATAGACAGGTGGG 59.241 57.143 0.00 0.00 0.00 4.61
3631 4571 1.078823 TGGACAGATAGACAGGTGGGT 59.921 52.381 0.00 0.00 0.00 4.51
3632 4572 1.482593 GGACAGATAGACAGGTGGGTG 59.517 57.143 0.00 0.00 0.00 4.61
3633 4573 1.482593 GACAGATAGACAGGTGGGTGG 59.517 57.143 0.00 0.00 0.00 4.61
3634 4574 0.833287 CAGATAGACAGGTGGGTGGG 59.167 60.000 0.00 0.00 0.00 4.61
3635 4575 0.417841 AGATAGACAGGTGGGTGGGT 59.582 55.000 0.00 0.00 0.00 4.51
3636 4576 0.541863 GATAGACAGGTGGGTGGGTG 59.458 60.000 0.00 0.00 0.00 4.61
3637 4577 0.178873 ATAGACAGGTGGGTGGGTGT 60.179 55.000 0.00 0.00 0.00 4.16
3638 4578 0.400815 TAGACAGGTGGGTGGGTGTT 60.401 55.000 0.00 0.00 0.00 3.32
3639 4579 1.229076 GACAGGTGGGTGGGTGTTT 59.771 57.895 0.00 0.00 0.00 2.83
3640 4580 0.475044 GACAGGTGGGTGGGTGTTTA 59.525 55.000 0.00 0.00 0.00 2.01
3641 4581 1.074889 GACAGGTGGGTGGGTGTTTAT 59.925 52.381 0.00 0.00 0.00 1.40
3642 4582 1.501604 ACAGGTGGGTGGGTGTTTATT 59.498 47.619 0.00 0.00 0.00 1.40
3643 4583 2.090999 ACAGGTGGGTGGGTGTTTATTT 60.091 45.455 0.00 0.00 0.00 1.40
3644 4584 2.969262 CAGGTGGGTGGGTGTTTATTTT 59.031 45.455 0.00 0.00 0.00 1.82
3645 4585 3.006430 CAGGTGGGTGGGTGTTTATTTTC 59.994 47.826 0.00 0.00 0.00 2.29
3646 4586 3.116900 AGGTGGGTGGGTGTTTATTTTCT 60.117 43.478 0.00 0.00 0.00 2.52
3647 4587 3.257375 GGTGGGTGGGTGTTTATTTTCTC 59.743 47.826 0.00 0.00 0.00 2.87
3648 4588 3.057806 GTGGGTGGGTGTTTATTTTCTCG 60.058 47.826 0.00 0.00 0.00 4.04
3649 4589 3.181442 TGGGTGGGTGTTTATTTTCTCGA 60.181 43.478 0.00 0.00 0.00 4.04
3650 4590 3.189910 GGGTGGGTGTTTATTTTCTCGAC 59.810 47.826 0.00 0.00 0.00 4.20
3651 4591 3.816523 GGTGGGTGTTTATTTTCTCGACA 59.183 43.478 0.00 0.00 0.00 4.35
3652 4592 4.276431 GGTGGGTGTTTATTTTCTCGACAA 59.724 41.667 0.00 0.00 0.00 3.18
3653 4593 5.221087 GGTGGGTGTTTATTTTCTCGACAAA 60.221 40.000 0.00 0.00 0.00 2.83
3654 4594 5.912955 GTGGGTGTTTATTTTCTCGACAAAG 59.087 40.000 0.00 0.00 0.00 2.77
3655 4595 5.009210 TGGGTGTTTATTTTCTCGACAAAGG 59.991 40.000 0.00 0.00 0.00 3.11
3656 4596 5.458015 GGTGTTTATTTTCTCGACAAAGGG 58.542 41.667 0.00 0.00 0.00 3.95
3657 4597 5.009310 GGTGTTTATTTTCTCGACAAAGGGT 59.991 40.000 0.00 0.00 0.00 4.34
3658 4598 5.912955 GTGTTTATTTTCTCGACAAAGGGTG 59.087 40.000 0.00 0.00 0.00 4.61
3659 4599 5.009210 TGTTTATTTTCTCGACAAAGGGTGG 59.991 40.000 0.00 0.00 0.00 4.61
3660 4600 3.502123 ATTTTCTCGACAAAGGGTGGA 57.498 42.857 0.00 0.00 32.91 4.02
3661 4601 3.502123 TTTTCTCGACAAAGGGTGGAT 57.498 42.857 0.00 0.00 33.51 3.41
3662 4602 3.502123 TTTCTCGACAAAGGGTGGATT 57.498 42.857 0.00 0.00 33.51 3.01
3663 4603 3.502123 TTCTCGACAAAGGGTGGATTT 57.498 42.857 0.00 0.00 33.51 2.17
3664 4604 3.502123 TCTCGACAAAGGGTGGATTTT 57.498 42.857 0.00 0.00 33.51 1.82
3665 4605 4.627284 TCTCGACAAAGGGTGGATTTTA 57.373 40.909 0.00 0.00 33.51 1.52
3666 4606 5.174037 TCTCGACAAAGGGTGGATTTTAT 57.826 39.130 0.00 0.00 33.51 1.40
3667 4607 5.566469 TCTCGACAAAGGGTGGATTTTATT 58.434 37.500 0.00 0.00 33.51 1.40
3668 4608 5.414454 TCTCGACAAAGGGTGGATTTTATTG 59.586 40.000 0.00 0.00 33.51 1.90
3669 4609 4.461081 TCGACAAAGGGTGGATTTTATTGG 59.539 41.667 0.00 0.00 28.37 3.16
3670 4610 4.503910 GACAAAGGGTGGATTTTATTGGC 58.496 43.478 0.00 0.00 0.00 4.52
3671 4611 4.167319 ACAAAGGGTGGATTTTATTGGCT 58.833 39.130 0.00 0.00 0.00 4.75
3672 4612 4.020307 ACAAAGGGTGGATTTTATTGGCTG 60.020 41.667 0.00 0.00 0.00 4.85
3673 4613 3.756082 AGGGTGGATTTTATTGGCTGA 57.244 42.857 0.00 0.00 0.00 4.26
3674 4614 4.059773 AGGGTGGATTTTATTGGCTGAA 57.940 40.909 0.00 0.00 0.00 3.02
3675 4615 4.424842 AGGGTGGATTTTATTGGCTGAAA 58.575 39.130 0.00 0.00 0.00 2.69
3676 4616 4.843516 AGGGTGGATTTTATTGGCTGAAAA 59.156 37.500 0.00 0.00 0.00 2.29
3677 4617 4.935205 GGGTGGATTTTATTGGCTGAAAAC 59.065 41.667 0.00 0.00 0.00 2.43
3678 4618 4.935205 GGTGGATTTTATTGGCTGAAAACC 59.065 41.667 0.00 0.00 0.00 3.27
3679 4619 4.625311 GTGGATTTTATTGGCTGAAAACCG 59.375 41.667 0.00 0.00 0.00 4.44
3680 4620 4.282195 TGGATTTTATTGGCTGAAAACCGT 59.718 37.500 0.00 0.00 0.00 4.83
3681 4621 4.625311 GGATTTTATTGGCTGAAAACCGTG 59.375 41.667 0.00 0.00 0.00 4.94
3682 4622 4.920640 TTTTATTGGCTGAAAACCGTGA 57.079 36.364 0.00 0.00 0.00 4.35
3683 4623 4.920640 TTTATTGGCTGAAAACCGTGAA 57.079 36.364 0.00 0.00 0.00 3.18
3684 4624 5.461032 TTTATTGGCTGAAAACCGTGAAT 57.539 34.783 0.00 0.00 0.00 2.57
3685 4625 5.461032 TTATTGGCTGAAAACCGTGAATT 57.539 34.783 0.00 0.00 0.00 2.17
3686 4626 2.791383 TGGCTGAAAACCGTGAATTG 57.209 45.000 0.00 0.00 0.00 2.32
3687 4627 1.269517 TGGCTGAAAACCGTGAATTGC 60.270 47.619 0.00 0.00 0.00 3.56
3688 4628 1.000274 GGCTGAAAACCGTGAATTGCT 60.000 47.619 0.00 0.00 0.00 3.91
3689 4629 2.053627 GCTGAAAACCGTGAATTGCTG 58.946 47.619 0.00 0.00 0.00 4.41
3690 4630 2.543653 GCTGAAAACCGTGAATTGCTGT 60.544 45.455 0.00 0.00 0.00 4.40
3691 4631 3.300009 CTGAAAACCGTGAATTGCTGTC 58.700 45.455 0.00 0.00 0.00 3.51
3692 4632 2.286713 TGAAAACCGTGAATTGCTGTCG 60.287 45.455 0.00 0.00 0.00 4.35
3693 4633 0.591170 AAACCGTGAATTGCTGTCGG 59.409 50.000 0.00 0.00 45.53 4.79
3694 4634 1.852067 AACCGTGAATTGCTGTCGGC 61.852 55.000 0.00 0.00 44.17 5.54
3704 4644 3.996825 GCTGTCGGCATAAAACCTG 57.003 52.632 0.00 0.00 41.35 4.00
3705 4645 1.448985 GCTGTCGGCATAAAACCTGA 58.551 50.000 0.00 0.00 41.35 3.86
3706 4646 2.017049 GCTGTCGGCATAAAACCTGAT 58.983 47.619 0.00 0.00 41.35 2.90
3707 4647 2.032178 GCTGTCGGCATAAAACCTGATC 59.968 50.000 0.00 0.00 41.35 2.92
3708 4648 2.614057 CTGTCGGCATAAAACCTGATCC 59.386 50.000 0.00 0.00 0.00 3.36
3709 4649 2.026729 TGTCGGCATAAAACCTGATCCA 60.027 45.455 0.00 0.00 0.00 3.41
3710 4650 2.354821 GTCGGCATAAAACCTGATCCAC 59.645 50.000 0.00 0.00 0.00 4.02
3711 4651 2.026729 TCGGCATAAAACCTGATCCACA 60.027 45.455 0.00 0.00 0.00 4.17
3712 4652 2.355756 CGGCATAAAACCTGATCCACAG 59.644 50.000 0.00 0.00 45.36 3.66
3713 4653 3.356290 GGCATAAAACCTGATCCACAGT 58.644 45.455 0.00 0.00 44.40 3.55
3714 4654 3.763897 GGCATAAAACCTGATCCACAGTT 59.236 43.478 0.00 0.00 44.40 3.16
3715 4655 4.142381 GGCATAAAACCTGATCCACAGTTC 60.142 45.833 0.00 0.00 44.40 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 7.101652 TGTTTTGCAATGTTGTACCTTTCTA 57.898 32.000 0.00 0.00 0.00 2.10
24 25 6.312672 ACTTGTTTTGCAATGTTGTACCTTTC 59.687 34.615 0.00 0.00 36.36 2.62
29 30 7.634432 GCTTTTACTTGTTTTGCAATGTTGTAC 59.366 33.333 0.00 0.00 36.36 2.90
30 31 7.463383 CGCTTTTACTTGTTTTGCAATGTTGTA 60.463 33.333 0.00 0.00 36.36 2.41
40 41 5.823353 TCTAACCCGCTTTTACTTGTTTTG 58.177 37.500 0.00 0.00 0.00 2.44
56 57 8.056407 AGACAATAATTGAGCTTTTCTAACCC 57.944 34.615 0.00 0.00 0.00 4.11
80 81 1.743623 TGTTGGTATTGCGGCGGAG 60.744 57.895 9.78 0.00 0.00 4.63
84 86 0.388006 GGTTGTGTTGGTATTGCGGC 60.388 55.000 0.00 0.00 0.00 6.53
108 110 7.915508 ACATTGATGCATGCAAAAGATTAATG 58.084 30.769 26.68 24.61 0.00 1.90
170 187 2.901051 CTATTCGAGGCGCAACGGGT 62.901 60.000 21.16 14.02 0.00 5.28
203 221 1.613270 GTTGCGCATAAACCTTTCGG 58.387 50.000 12.75 0.00 0.00 4.30
261 279 4.177229 GAGCCAAGACAGCTCGTC 57.823 61.111 7.88 7.88 46.58 4.20
289 307 5.393962 CCTTTCCAAAACAAGTGATCGATC 58.606 41.667 18.72 18.72 0.00 3.69
290 308 4.321230 GCCTTTCCAAAACAAGTGATCGAT 60.321 41.667 0.00 0.00 0.00 3.59
291 309 3.004315 GCCTTTCCAAAACAAGTGATCGA 59.996 43.478 0.00 0.00 0.00 3.59
292 310 3.308530 GCCTTTCCAAAACAAGTGATCG 58.691 45.455 0.00 0.00 0.00 3.69
320 338 3.303924 GCTTCGCTACCACTAGCTAGTAC 60.304 52.174 25.63 11.90 43.07 2.73
327 345 1.067142 TGTTGGCTTCGCTACCACTAG 60.067 52.381 0.00 0.00 35.10 2.57
328 346 0.970640 TGTTGGCTTCGCTACCACTA 59.029 50.000 0.00 0.00 35.10 2.74
329 347 0.324943 ATGTTGGCTTCGCTACCACT 59.675 50.000 0.00 0.00 35.10 4.00
330 348 0.447801 CATGTTGGCTTCGCTACCAC 59.552 55.000 0.00 0.00 35.10 4.16
331 349 1.305219 GCATGTTGGCTTCGCTACCA 61.305 55.000 0.00 0.00 0.00 3.25
334 352 0.605050 TGTGCATGTTGGCTTCGCTA 60.605 50.000 0.00 0.00 34.04 4.26
335 353 1.454572 TTGTGCATGTTGGCTTCGCT 61.455 50.000 0.00 0.00 34.04 4.93
336 354 1.005294 CTTGTGCATGTTGGCTTCGC 61.005 55.000 0.00 0.00 34.04 4.70
337 355 0.387622 CCTTGTGCATGTTGGCTTCG 60.388 55.000 0.00 0.00 34.04 3.79
372 390 3.470645 ACCTCGTCAACTAATATGGGC 57.529 47.619 0.00 0.00 0.00 5.36
380 398 4.521639 ACAGTGAACATACCTCGTCAACTA 59.478 41.667 0.00 0.00 0.00 2.24
434 452 1.690219 ATCCCGTGATCTGGAGCACC 61.690 60.000 12.41 0.00 44.19 5.01
467 504 2.327325 AACTCCTTCCACTCTAGCCA 57.673 50.000 0.00 0.00 0.00 4.75
491 528 8.036273 TGAATTTCAAATTTACTCTCGGGTAC 57.964 34.615 0.00 0.00 0.00 3.34
496 534 8.289618 TCCACTTGAATTTCAAATTTACTCTCG 58.710 33.333 12.62 0.80 35.73 4.04
503 541 7.795047 ACTCCTTCCACTTGAATTTCAAATTT 58.205 30.769 12.62 0.00 35.73 1.82
543 612 6.424812 CCTTTCACTGGAATTTCAAATTGACC 59.575 38.462 0.00 0.00 31.93 4.02
677 1166 6.852664 AGCCTTTATAAAGATTTTCACACGG 58.147 36.000 23.95 7.00 38.28 4.94
678 1167 9.274065 GTAAGCCTTTATAAAGATTTTCACACG 57.726 33.333 23.95 6.61 38.28 4.49
698 1323 9.451002 ACTTCCTTTCTTTCTTAATAGTAAGCC 57.549 33.333 5.06 0.00 37.27 4.35
711 1336 6.351202 GGTCCTAGTCCTACTTCCTTTCTTTC 60.351 46.154 0.00 0.00 0.00 2.62
714 1339 4.295506 AGGTCCTAGTCCTACTTCCTTTCT 59.704 45.833 0.00 0.00 33.04 2.52
716 1341 4.696040 AGGTCCTAGTCCTACTTCCTTT 57.304 45.455 0.00 0.00 33.04 3.11
718 1343 5.810456 TTTAGGTCCTAGTCCTACTTCCT 57.190 43.478 9.55 0.00 37.29 3.36
722 1347 6.923670 TCATCATTTAGGTCCTAGTCCTACT 58.076 40.000 9.55 0.00 37.29 2.57
723 1348 7.256012 CCTTCATCATTTAGGTCCTAGTCCTAC 60.256 44.444 9.55 0.00 37.29 3.18
724 1349 6.782988 CCTTCATCATTTAGGTCCTAGTCCTA 59.217 42.308 0.00 6.79 36.60 2.94
725 1350 5.604650 CCTTCATCATTTAGGTCCTAGTCCT 59.395 44.000 0.00 8.46 38.91 3.85
726 1351 5.367060 ACCTTCATCATTTAGGTCCTAGTCC 59.633 44.000 0.00 0.00 37.78 3.85
729 1354 6.127054 TGACACCTTCATCATTTAGGTCCTAG 60.127 42.308 0.00 0.00 40.24 3.02
753 1378 3.557577 TGCACTGGAAACAATCGATTG 57.442 42.857 31.51 31.51 42.06 2.67
767 1392 0.532640 TAGCGCCATACCATGCACTG 60.533 55.000 2.29 0.00 0.00 3.66
768 1393 0.180171 TTAGCGCCATACCATGCACT 59.820 50.000 2.29 0.00 0.00 4.40
769 1394 1.069022 CATTAGCGCCATACCATGCAC 60.069 52.381 2.29 0.00 0.00 4.57
803 1428 3.678216 GCGCTTTGCTTTGCTTTTAGCA 61.678 45.455 0.00 0.00 45.36 3.49
804 1429 1.136529 GCGCTTTGCTTTGCTTTTAGC 60.137 47.619 0.00 0.00 40.61 3.09
805 1430 1.123038 CGCGCTTTGCTTTGCTTTTAG 59.877 47.619 5.56 0.00 43.27 1.85
806 1431 1.127701 CGCGCTTTGCTTTGCTTTTA 58.872 45.000 5.56 0.00 43.27 1.52
807 1432 1.489881 CCGCGCTTTGCTTTGCTTTT 61.490 50.000 5.56 0.00 43.27 2.27
872 1499 2.612095 TTAAATAGGGCCGGCCGGTG 62.612 60.000 42.53 21.58 37.65 4.94
873 1500 1.924145 TTTAAATAGGGCCGGCCGGT 61.924 55.000 42.53 29.47 37.65 5.28
874 1501 1.152922 TTTAAATAGGGCCGGCCGG 60.153 57.895 40.26 40.26 36.85 6.13
875 1502 0.179040 TCTTTAAATAGGGCCGGCCG 60.179 55.000 38.22 21.04 36.85 6.13
876 1503 1.605753 CTCTTTAAATAGGGCCGGCC 58.394 55.000 38.57 38.57 0.00 6.13
877 1504 1.605753 CCTCTTTAAATAGGGCCGGC 58.394 55.000 21.18 21.18 0.00 6.13
904 1531 0.911525 TGGGAGCTGGGGAAGAAGAG 60.912 60.000 0.00 0.00 0.00 2.85
953 1594 0.531532 GTCGGAGCAGTGGATGGATG 60.532 60.000 0.00 0.00 0.00 3.51
982 1652 6.159293 CCATCATGCACGTATGTACTAGATT 58.841 40.000 0.00 0.00 0.00 2.40
983 1653 5.714047 CCATCATGCACGTATGTACTAGAT 58.286 41.667 0.00 0.00 0.00 1.98
984 1654 4.558697 GCCATCATGCACGTATGTACTAGA 60.559 45.833 0.00 0.00 0.00 2.43
985 1655 3.675225 GCCATCATGCACGTATGTACTAG 59.325 47.826 0.00 0.00 0.00 2.57
986 1656 3.068873 TGCCATCATGCACGTATGTACTA 59.931 43.478 0.00 0.00 36.04 1.82
987 1657 2.158971 TGCCATCATGCACGTATGTACT 60.159 45.455 0.00 0.00 36.04 2.73
1373 2046 2.202492 CCTCAGCGTCGTCGGAAG 60.202 66.667 3.90 0.00 37.56 3.46
1374 2047 2.974489 GACCTCAGCGTCGTCGGAA 61.974 63.158 3.90 0.00 37.56 4.30
1375 2048 3.429141 GACCTCAGCGTCGTCGGA 61.429 66.667 3.90 0.00 37.56 4.55
1384 2057 1.303799 TACTCCGTGACGACCTCAGC 61.304 60.000 6.54 0.00 0.00 4.26
1386 2059 0.250424 TGTACTCCGTGACGACCTCA 60.250 55.000 6.54 0.00 0.00 3.86
1388 2061 1.093159 GATGTACTCCGTGACGACCT 58.907 55.000 6.54 0.00 0.00 3.85
1410 2083 4.947147 GCCACCACCAGCCAACGA 62.947 66.667 0.00 0.00 0.00 3.85
1477 2159 3.646715 CACCGGGCCCTTGAAGGA 61.647 66.667 22.43 0.00 37.67 3.36
1495 2177 1.457823 TTGTACTCGGACACGTGGCT 61.458 55.000 23.08 3.26 41.85 4.75
1496 2178 1.007038 TTGTACTCGGACACGTGGC 60.007 57.895 21.57 18.48 41.85 5.01
1542 2224 4.436998 CAGCCGACGACCAGGACC 62.437 72.222 0.00 0.00 0.00 4.46
1875 2557 1.005630 GATCTTGATCTCCCCGGCG 60.006 63.158 0.00 0.00 0.00 6.46
2093 2834 7.759489 TCATTGTGCAACTAAATTAAGACCT 57.241 32.000 0.00 0.00 38.04 3.85
2114 2860 1.893786 GCCTCGATCGGCCTATCAT 59.106 57.895 16.41 0.00 44.41 2.45
2182 2931 6.817184 TCACACTATCTGGATTAGCTTAACC 58.183 40.000 0.00 0.00 0.00 2.85
2245 2994 3.752747 TCATGACAACTAGTGCACCATTG 59.247 43.478 14.63 17.21 0.00 2.82
2246 2995 4.019792 TCATGACAACTAGTGCACCATT 57.980 40.909 14.63 2.28 0.00 3.16
2247 2996 3.701205 TCATGACAACTAGTGCACCAT 57.299 42.857 14.63 4.89 0.00 3.55
2248 2997 3.007831 TCATCATGACAACTAGTGCACCA 59.992 43.478 14.63 0.00 0.00 4.17
2249 2998 3.599343 TCATCATGACAACTAGTGCACC 58.401 45.455 14.63 0.00 0.00 5.01
2250 2999 4.872124 TCATCATCATGACAACTAGTGCAC 59.128 41.667 9.40 9.40 33.80 4.57
2252 3001 4.510711 CCTCATCATCATGACAACTAGTGC 59.489 45.833 0.00 0.00 33.80 4.40
2253 3002 4.510711 GCCTCATCATCATGACAACTAGTG 59.489 45.833 0.00 0.00 33.80 2.74
2254 3003 4.162888 TGCCTCATCATCATGACAACTAGT 59.837 41.667 0.00 0.00 33.80 2.57
2277 3029 3.436704 CAGTGTGCTTGTCGGTTTATGAT 59.563 43.478 0.00 0.00 0.00 2.45
2387 3139 6.568081 CGTTTAGATCAGTATACGGAAGAGGG 60.568 46.154 9.82 0.00 0.00 4.30
2388 3140 6.372185 CGTTTAGATCAGTATACGGAAGAGG 58.628 44.000 9.82 0.00 0.00 3.69
2390 3142 5.530171 AGCGTTTAGATCAGTATACGGAAGA 59.470 40.000 9.82 1.80 30.72 2.87
2394 3146 5.359716 AGAGCGTTTAGATCAGTATACGG 57.640 43.478 0.00 0.00 37.82 4.02
2408 3160 9.530633 CCTCTGTAAACTAATATAAGAGCGTTT 57.469 33.333 0.00 0.00 0.00 3.60
2409 3161 8.910944 TCCTCTGTAAACTAATATAAGAGCGTT 58.089 33.333 0.00 0.00 0.00 4.84
2410 3162 8.351461 GTCCTCTGTAAACTAATATAAGAGCGT 58.649 37.037 0.00 0.00 0.00 5.07
2411 3163 8.350722 TGTCCTCTGTAAACTAATATAAGAGCG 58.649 37.037 0.00 0.00 0.00 5.03
2412 3164 9.465985 GTGTCCTCTGTAAACTAATATAAGAGC 57.534 37.037 0.00 0.00 0.00 4.09
2420 3172 8.603304 ACCTAATTGTGTCCTCTGTAAACTAAT 58.397 33.333 0.00 0.00 0.00 1.73
2421 3173 7.970102 ACCTAATTGTGTCCTCTGTAAACTAA 58.030 34.615 0.00 0.00 0.00 2.24
2422 3174 7.453752 AGACCTAATTGTGTCCTCTGTAAACTA 59.546 37.037 5.78 0.00 31.76 2.24
2423 3175 6.270231 AGACCTAATTGTGTCCTCTGTAAACT 59.730 38.462 5.78 0.00 31.76 2.66
2424 3176 6.465084 AGACCTAATTGTGTCCTCTGTAAAC 58.535 40.000 5.78 0.00 31.76 2.01
2425 3177 6.681729 AGACCTAATTGTGTCCTCTGTAAA 57.318 37.500 5.78 0.00 31.76 2.01
2426 3178 6.269077 TCAAGACCTAATTGTGTCCTCTGTAA 59.731 38.462 5.78 0.00 31.76 2.41
2427 3179 5.778241 TCAAGACCTAATTGTGTCCTCTGTA 59.222 40.000 5.78 0.00 31.76 2.74
2428 3180 4.593206 TCAAGACCTAATTGTGTCCTCTGT 59.407 41.667 5.78 0.00 31.76 3.41
2429 3181 5.152623 TCAAGACCTAATTGTGTCCTCTG 57.847 43.478 5.78 2.95 31.76 3.35
2430 3182 7.496346 TTATCAAGACCTAATTGTGTCCTCT 57.504 36.000 5.78 0.00 31.76 3.69
2431 3183 7.169982 CGATTATCAAGACCTAATTGTGTCCTC 59.830 40.741 5.78 0.00 31.76 3.71
2432 3184 6.986817 CGATTATCAAGACCTAATTGTGTCCT 59.013 38.462 5.78 0.00 31.76 3.85
2433 3185 6.984474 TCGATTATCAAGACCTAATTGTGTCC 59.016 38.462 5.78 0.00 31.76 4.02
2434 3186 8.594881 ATCGATTATCAAGACCTAATTGTGTC 57.405 34.615 0.00 1.98 0.00 3.67
2435 3187 8.964476 AATCGATTATCAAGACCTAATTGTGT 57.036 30.769 9.39 0.00 0.00 3.72
2473 3236 3.005261 TGCACCACCAAATACACACATTC 59.995 43.478 0.00 0.00 0.00 2.67
2474 3237 2.961741 TGCACCACCAAATACACACATT 59.038 40.909 0.00 0.00 0.00 2.71
2475 3238 2.557924 CTGCACCACCAAATACACACAT 59.442 45.455 0.00 0.00 0.00 3.21
2476 3239 1.952990 CTGCACCACCAAATACACACA 59.047 47.619 0.00 0.00 0.00 3.72
2477 3240 1.269448 CCTGCACCACCAAATACACAC 59.731 52.381 0.00 0.00 0.00 3.82
2478 3241 1.614996 CCTGCACCACCAAATACACA 58.385 50.000 0.00 0.00 0.00 3.72
2479 3242 0.887933 CCCTGCACCACCAAATACAC 59.112 55.000 0.00 0.00 0.00 2.90
2483 3246 1.187567 GCTTCCCTGCACCACCAAAT 61.188 55.000 0.00 0.00 0.00 2.32
2484 3247 1.832167 GCTTCCCTGCACCACCAAA 60.832 57.895 0.00 0.00 0.00 3.28
2485 3248 2.203480 GCTTCCCTGCACCACCAA 60.203 61.111 0.00 0.00 0.00 3.67
2486 3249 4.641645 CGCTTCCCTGCACCACCA 62.642 66.667 0.00 0.00 0.00 4.17
2487 3250 4.329545 TCGCTTCCCTGCACCACC 62.330 66.667 0.00 0.00 0.00 4.61
2686 3449 0.169672 GCTTGTTGCTGTGCGATCAT 59.830 50.000 0.00 0.00 38.95 2.45
2687 3450 1.165284 TGCTTGTTGCTGTGCGATCA 61.165 50.000 0.00 0.00 43.37 2.92
2689 3452 0.886043 TCTGCTTGTTGCTGTGCGAT 60.886 50.000 0.00 0.00 43.37 4.58
2690 3453 1.501337 CTCTGCTTGTTGCTGTGCGA 61.501 55.000 0.00 0.00 43.37 5.10
2692 3455 0.040603 GTCTCTGCTTGTTGCTGTGC 60.041 55.000 0.00 0.00 43.37 4.57
2694 3457 1.878088 CATGTCTCTGCTTGTTGCTGT 59.122 47.619 0.00 0.00 43.37 4.40
2696 3459 2.556144 TCATGTCTCTGCTTGTTGCT 57.444 45.000 0.00 0.00 43.37 3.91
2699 3462 3.262660 TCAGGATCATGTCTCTGCTTGTT 59.737 43.478 7.33 0.00 0.00 2.83
2742 3538 1.758936 CTTGAGATCCATGCCTTGCA 58.241 50.000 0.00 0.00 44.86 4.08
2745 3541 0.465097 CCGCTTGAGATCCATGCCTT 60.465 55.000 12.98 0.00 41.38 4.35
2794 3608 2.356278 CAGTGGGGTGGGGATGTG 59.644 66.667 0.00 0.00 0.00 3.21
2917 3761 7.201688 GCTCTGTCTGTCTTTCTTTCTTTCTTT 60.202 37.037 0.00 0.00 0.00 2.52
2927 3771 1.722034 TGGGCTCTGTCTGTCTTTCT 58.278 50.000 0.00 0.00 0.00 2.52
2928 3772 2.550830 TTGGGCTCTGTCTGTCTTTC 57.449 50.000 0.00 0.00 0.00 2.62
2929 3773 3.515602 ATTTGGGCTCTGTCTGTCTTT 57.484 42.857 0.00 0.00 0.00 2.52
2930 3774 3.515602 AATTTGGGCTCTGTCTGTCTT 57.484 42.857 0.00 0.00 0.00 3.01
2931 3775 3.515602 AAATTTGGGCTCTGTCTGTCT 57.484 42.857 0.00 0.00 0.00 3.41
2932 3776 3.905784 CAAAATTTGGGCTCTGTCTGTC 58.094 45.455 0.00 0.00 0.00 3.51
2968 3812 1.413812 TGCCGATGCATCAGATACAGT 59.586 47.619 25.70 0.00 44.23 3.55
2985 3829 1.897615 GATCCTGCCTGCAGATGCC 60.898 63.158 20.29 0.80 46.30 4.40
2991 3835 1.140452 GAGAAGATGATCCTGCCTGCA 59.860 52.381 0.00 0.00 0.00 4.41
3031 3880 3.462021 CCTAGCTCAGCTGTACATTTCC 58.538 50.000 10.31 0.00 40.10 3.13
3032 3881 2.869192 GCCTAGCTCAGCTGTACATTTC 59.131 50.000 10.31 0.00 40.10 2.17
3033 3882 2.503356 AGCCTAGCTCAGCTGTACATTT 59.497 45.455 10.31 0.00 40.10 2.32
3034 3883 2.114616 AGCCTAGCTCAGCTGTACATT 58.885 47.619 10.31 0.00 40.10 2.71
3052 3901 0.609131 TTGCAACCAAGGAGGCTAGC 60.609 55.000 6.04 6.04 43.14 3.42
3104 3953 6.423302 CAGCAGCAGATTTATTACAGTAGGAG 59.577 42.308 0.00 0.00 0.00 3.69
3105 3954 6.098266 TCAGCAGCAGATTTATTACAGTAGGA 59.902 38.462 0.00 0.00 0.00 2.94
3106 3955 6.201806 GTCAGCAGCAGATTTATTACAGTAGG 59.798 42.308 0.00 0.00 0.00 3.18
3107 3956 6.201806 GGTCAGCAGCAGATTTATTACAGTAG 59.798 42.308 0.00 0.00 0.00 2.57
3108 3957 6.049149 GGTCAGCAGCAGATTTATTACAGTA 58.951 40.000 0.00 0.00 0.00 2.74
3109 3958 4.878397 GGTCAGCAGCAGATTTATTACAGT 59.122 41.667 0.00 0.00 0.00 3.55
3110 3959 4.025396 CGGTCAGCAGCAGATTTATTACAG 60.025 45.833 0.00 0.00 0.00 2.74
3111 3960 3.871006 CGGTCAGCAGCAGATTTATTACA 59.129 43.478 0.00 0.00 0.00 2.41
3112 3961 4.025647 GTCGGTCAGCAGCAGATTTATTAC 60.026 45.833 0.00 0.00 0.00 1.89
3113 3962 4.119862 GTCGGTCAGCAGCAGATTTATTA 58.880 43.478 0.00 0.00 0.00 0.98
3114 3963 2.939103 GTCGGTCAGCAGCAGATTTATT 59.061 45.455 0.00 0.00 0.00 1.40
3118 3967 1.078848 GGTCGGTCAGCAGCAGATT 60.079 57.895 0.00 0.00 0.00 2.40
3133 3986 1.604278 GTTCTGAACAAGGTGCAGGTC 59.396 52.381 15.34 0.00 39.55 3.85
3134 3987 1.680338 GTTCTGAACAAGGTGCAGGT 58.320 50.000 15.34 0.00 39.55 4.00
3135 3988 0.588252 CGTTCTGAACAAGGTGCAGG 59.412 55.000 19.56 0.00 39.55 4.85
3136 3989 1.528586 CTCGTTCTGAACAAGGTGCAG 59.471 52.381 19.56 0.00 40.40 4.41
3153 4011 3.443037 CATTGAAGCTAGGTCACTCTCG 58.557 50.000 0.00 0.00 0.00 4.04
3170 4028 1.677966 AGTCAGCCAGGCAGCATTG 60.678 57.895 15.80 2.21 34.23 2.82
3177 4035 1.375268 GTCAGTCAGTCAGCCAGGC 60.375 63.158 1.84 1.84 0.00 4.85
3178 4036 0.037512 CTGTCAGTCAGTCAGCCAGG 60.038 60.000 0.00 0.00 39.17 4.45
3183 4041 1.626686 ACCTCCTGTCAGTCAGTCAG 58.373 55.000 0.00 0.00 42.19 3.51
3186 4044 1.794714 ACAACCTCCTGTCAGTCAGT 58.205 50.000 0.00 0.00 42.19 3.41
3187 4045 3.511540 TCATACAACCTCCTGTCAGTCAG 59.488 47.826 0.00 0.00 43.27 3.51
3188 4046 3.506398 TCATACAACCTCCTGTCAGTCA 58.494 45.455 0.00 0.00 0.00 3.41
3226 4089 9.064706 AGCTCATGATTACTGATTTTATTCCTG 57.935 33.333 0.00 0.00 0.00 3.86
3227 4090 9.282569 GAGCTCATGATTACTGATTTTATTCCT 57.717 33.333 9.40 0.00 0.00 3.36
3265 4132 4.194640 CAAGAGAGAGAGAGAGAGAGGTG 58.805 52.174 0.00 0.00 0.00 4.00
3266 4133 3.370953 GCAAGAGAGAGAGAGAGAGAGGT 60.371 52.174 0.00 0.00 0.00 3.85
3297 4164 1.301677 CCTCCTTCCTTGCGAGTTGC 61.302 60.000 0.00 0.00 46.70 4.17
3301 4168 0.813210 GCATCCTCCTTCCTTGCGAG 60.813 60.000 0.00 0.00 0.00 5.03
3302 4169 1.221840 GCATCCTCCTTCCTTGCGA 59.778 57.895 0.00 0.00 0.00 5.10
3303 4170 0.393537 AAGCATCCTCCTTCCTTGCG 60.394 55.000 0.00 0.00 38.32 4.85
3304 4171 1.475682 CAAAGCATCCTCCTTCCTTGC 59.524 52.381 0.00 0.00 0.00 4.01
3305 4172 1.475682 GCAAAGCATCCTCCTTCCTTG 59.524 52.381 0.00 0.00 0.00 3.61
3317 4184 1.873698 CACCAAAGCAAGCAAAGCAT 58.126 45.000 0.00 0.00 0.00 3.79
3318 4185 0.810823 GCACCAAAGCAAGCAAAGCA 60.811 50.000 0.00 0.00 0.00 3.91
3320 4187 0.179078 TGGCACCAAAGCAAGCAAAG 60.179 50.000 0.00 0.00 35.83 2.77
3321 4188 0.461693 GTGGCACCAAAGCAAGCAAA 60.462 50.000 6.29 0.00 35.83 3.68
3340 4236 7.108841 ACCCAAATCAATGAGAATGAATGAG 57.891 36.000 0.00 0.00 0.00 2.90
3370 4278 3.257393 CAAGAGGAACAGGAACAGATCG 58.743 50.000 0.00 0.00 0.00 3.69
3410 4336 1.565759 CCCTGAACCTGAATCCATGGA 59.434 52.381 18.88 18.88 0.00 3.41
3424 4350 1.275291 GACGAGTGAATGACCCCTGAA 59.725 52.381 0.00 0.00 0.00 3.02
3425 4351 0.895530 GACGAGTGAATGACCCCTGA 59.104 55.000 0.00 0.00 0.00 3.86
3432 4358 2.353704 GGACACATGGACGAGTGAATGA 60.354 50.000 0.00 0.00 39.03 2.57
3442 4368 0.674895 GTGGAGCAGGACACATGGAC 60.675 60.000 0.00 0.00 37.54 4.02
3503 4443 7.212976 ACTGACTGTACCATCATCATAATCAC 58.787 38.462 0.00 0.00 0.00 3.06
3514 4454 7.064728 GGAAATTAACTGACTGACTGTACCATC 59.935 40.741 0.00 0.00 0.00 3.51
3526 4466 2.378547 TGGCTGGGGAAATTAACTGACT 59.621 45.455 0.00 0.00 0.00 3.41
3585 4525 2.268762 TGTTCACCTGCACTGCATTA 57.731 45.000 3.64 0.00 38.13 1.90
3587 4527 1.338973 CTTTGTTCACCTGCACTGCAT 59.661 47.619 3.64 0.00 38.13 3.96
3592 4532 2.227388 CCAGATCTTTGTTCACCTGCAC 59.773 50.000 0.00 0.00 0.00 4.57
3597 4537 4.008074 TCTGTCCAGATCTTTGTTCACC 57.992 45.455 0.00 0.00 31.41 4.02
3598 4538 6.533367 GTCTATCTGTCCAGATCTTTGTTCAC 59.467 42.308 12.85 0.00 44.37 3.18
3599 4539 6.211384 TGTCTATCTGTCCAGATCTTTGTTCA 59.789 38.462 12.85 3.17 44.37 3.18
3600 4540 6.634805 TGTCTATCTGTCCAGATCTTTGTTC 58.365 40.000 12.85 1.02 44.37 3.18
3601 4541 6.351711 CCTGTCTATCTGTCCAGATCTTTGTT 60.352 42.308 12.85 0.00 44.37 2.83
3602 4542 5.128499 CCTGTCTATCTGTCCAGATCTTTGT 59.872 44.000 12.85 0.00 44.37 2.83
3603 4543 5.128499 ACCTGTCTATCTGTCCAGATCTTTG 59.872 44.000 12.85 3.83 44.37 2.77
3604 4544 5.128499 CACCTGTCTATCTGTCCAGATCTTT 59.872 44.000 12.85 0.00 44.37 2.52
3605 4545 4.648762 CACCTGTCTATCTGTCCAGATCTT 59.351 45.833 12.85 0.00 44.37 2.40
3606 4546 4.214310 CACCTGTCTATCTGTCCAGATCT 58.786 47.826 12.85 0.00 44.37 2.75
3607 4547 3.320541 CCACCTGTCTATCTGTCCAGATC 59.679 52.174 12.85 0.95 44.37 2.75
3609 4549 2.624293 CCCACCTGTCTATCTGTCCAGA 60.624 54.545 0.00 0.00 42.37 3.86
3610 4550 1.759445 CCCACCTGTCTATCTGTCCAG 59.241 57.143 0.00 0.00 0.00 3.86
3611 4551 1.078823 ACCCACCTGTCTATCTGTCCA 59.921 52.381 0.00 0.00 0.00 4.02
3612 4552 1.482593 CACCCACCTGTCTATCTGTCC 59.517 57.143 0.00 0.00 0.00 4.02
3613 4553 1.482593 CCACCCACCTGTCTATCTGTC 59.517 57.143 0.00 0.00 0.00 3.51
3614 4554 1.573108 CCACCCACCTGTCTATCTGT 58.427 55.000 0.00 0.00 0.00 3.41
3615 4555 0.833287 CCCACCCACCTGTCTATCTG 59.167 60.000 0.00 0.00 0.00 2.90
3616 4556 0.417841 ACCCACCCACCTGTCTATCT 59.582 55.000 0.00 0.00 0.00 1.98
3617 4557 0.541863 CACCCACCCACCTGTCTATC 59.458 60.000 0.00 0.00 0.00 2.08
3618 4558 0.178873 ACACCCACCCACCTGTCTAT 60.179 55.000 0.00 0.00 0.00 1.98
3619 4559 0.400815 AACACCCACCCACCTGTCTA 60.401 55.000 0.00 0.00 0.00 2.59
3620 4560 1.286305 AAACACCCACCCACCTGTCT 61.286 55.000 0.00 0.00 0.00 3.41
3621 4561 0.475044 TAAACACCCACCCACCTGTC 59.525 55.000 0.00 0.00 0.00 3.51
3622 4562 1.154430 ATAAACACCCACCCACCTGT 58.846 50.000 0.00 0.00 0.00 4.00
3623 4563 2.302587 AATAAACACCCACCCACCTG 57.697 50.000 0.00 0.00 0.00 4.00
3624 4564 3.116900 AGAAAATAAACACCCACCCACCT 60.117 43.478 0.00 0.00 0.00 4.00
3625 4565 3.236047 AGAAAATAAACACCCACCCACC 58.764 45.455 0.00 0.00 0.00 4.61
3626 4566 3.057806 CGAGAAAATAAACACCCACCCAC 60.058 47.826 0.00 0.00 0.00 4.61
3627 4567 3.150767 CGAGAAAATAAACACCCACCCA 58.849 45.455 0.00 0.00 0.00 4.51
3628 4568 3.189910 GTCGAGAAAATAAACACCCACCC 59.810 47.826 0.00 0.00 0.00 4.61
3629 4569 3.816523 TGTCGAGAAAATAAACACCCACC 59.183 43.478 0.00 0.00 0.00 4.61
3630 4570 5.427036 TTGTCGAGAAAATAAACACCCAC 57.573 39.130 0.00 0.00 0.00 4.61
3631 4571 5.009210 CCTTTGTCGAGAAAATAAACACCCA 59.991 40.000 9.21 0.00 0.00 4.51
3632 4572 5.458015 CCTTTGTCGAGAAAATAAACACCC 58.542 41.667 9.21 0.00 0.00 4.61
3633 4573 5.009310 ACCCTTTGTCGAGAAAATAAACACC 59.991 40.000 9.21 0.00 0.00 4.16
3634 4574 5.912955 CACCCTTTGTCGAGAAAATAAACAC 59.087 40.000 9.21 0.00 0.00 3.32
3635 4575 5.009210 CCACCCTTTGTCGAGAAAATAAACA 59.991 40.000 9.21 0.00 0.00 2.83
3636 4576 5.239963 TCCACCCTTTGTCGAGAAAATAAAC 59.760 40.000 9.21 0.00 0.00 2.01
3637 4577 5.378332 TCCACCCTTTGTCGAGAAAATAAA 58.622 37.500 9.21 0.00 0.00 1.40
3638 4578 4.975631 TCCACCCTTTGTCGAGAAAATAA 58.024 39.130 9.21 0.00 0.00 1.40
3639 4579 4.627284 TCCACCCTTTGTCGAGAAAATA 57.373 40.909 9.21 0.00 0.00 1.40
3640 4580 3.502123 TCCACCCTTTGTCGAGAAAAT 57.498 42.857 9.21 0.00 0.00 1.82
3641 4581 3.502123 ATCCACCCTTTGTCGAGAAAA 57.498 42.857 9.21 1.35 0.00 2.29
3642 4582 3.502123 AATCCACCCTTTGTCGAGAAA 57.498 42.857 7.58 7.58 0.00 2.52
3643 4583 3.502123 AAATCCACCCTTTGTCGAGAA 57.498 42.857 0.00 0.00 0.00 2.87
3644 4584 3.502123 AAAATCCACCCTTTGTCGAGA 57.498 42.857 0.00 0.00 0.00 4.04
3645 4585 5.393027 CCAATAAAATCCACCCTTTGTCGAG 60.393 44.000 0.00 0.00 0.00 4.04
3646 4586 4.461081 CCAATAAAATCCACCCTTTGTCGA 59.539 41.667 0.00 0.00 0.00 4.20
3647 4587 4.743493 CCAATAAAATCCACCCTTTGTCG 58.257 43.478 0.00 0.00 0.00 4.35
3648 4588 4.222810 AGCCAATAAAATCCACCCTTTGTC 59.777 41.667 0.00 0.00 0.00 3.18
3649 4589 4.020307 CAGCCAATAAAATCCACCCTTTGT 60.020 41.667 0.00 0.00 0.00 2.83
3650 4590 4.222588 TCAGCCAATAAAATCCACCCTTTG 59.777 41.667 0.00 0.00 0.00 2.77
3651 4591 4.424842 TCAGCCAATAAAATCCACCCTTT 58.575 39.130 0.00 0.00 0.00 3.11
3652 4592 4.059773 TCAGCCAATAAAATCCACCCTT 57.940 40.909 0.00 0.00 0.00 3.95
3653 4593 3.756082 TCAGCCAATAAAATCCACCCT 57.244 42.857 0.00 0.00 0.00 4.34
3654 4594 4.817318 TTTCAGCCAATAAAATCCACCC 57.183 40.909 0.00 0.00 0.00 4.61
3655 4595 4.935205 GGTTTTCAGCCAATAAAATCCACC 59.065 41.667 0.00 0.00 0.00 4.61
3656 4596 4.625311 CGGTTTTCAGCCAATAAAATCCAC 59.375 41.667 0.00 0.00 0.00 4.02
3657 4597 4.282195 ACGGTTTTCAGCCAATAAAATCCA 59.718 37.500 0.00 0.00 0.00 3.41
3658 4598 4.625311 CACGGTTTTCAGCCAATAAAATCC 59.375 41.667 0.00 0.00 0.00 3.01
3659 4599 5.465935 TCACGGTTTTCAGCCAATAAAATC 58.534 37.500 0.00 0.00 0.00 2.17
3660 4600 5.461032 TCACGGTTTTCAGCCAATAAAAT 57.539 34.783 0.00 0.00 0.00 1.82
3661 4601 4.920640 TCACGGTTTTCAGCCAATAAAA 57.079 36.364 0.00 0.00 0.00 1.52
3662 4602 4.920640 TTCACGGTTTTCAGCCAATAAA 57.079 36.364 0.00 0.00 0.00 1.40
3663 4603 5.226396 CAATTCACGGTTTTCAGCCAATAA 58.774 37.500 0.00 0.00 0.00 1.40
3664 4604 4.804108 CAATTCACGGTTTTCAGCCAATA 58.196 39.130 0.00 0.00 0.00 1.90
3665 4605 3.652274 CAATTCACGGTTTTCAGCCAAT 58.348 40.909 0.00 0.00 0.00 3.16
3666 4606 2.801342 GCAATTCACGGTTTTCAGCCAA 60.801 45.455 0.00 0.00 0.00 4.52
3667 4607 1.269517 GCAATTCACGGTTTTCAGCCA 60.270 47.619 0.00 0.00 0.00 4.75
3668 4608 1.000274 AGCAATTCACGGTTTTCAGCC 60.000 47.619 0.00 0.00 0.00 4.85
3669 4609 2.053627 CAGCAATTCACGGTTTTCAGC 58.946 47.619 0.00 0.00 0.00 4.26
3670 4610 3.300009 GACAGCAATTCACGGTTTTCAG 58.700 45.455 0.00 0.00 0.00 3.02
3671 4611 2.286713 CGACAGCAATTCACGGTTTTCA 60.287 45.455 0.00 0.00 0.00 2.69
3672 4612 2.307049 CGACAGCAATTCACGGTTTTC 58.693 47.619 0.00 0.00 0.00 2.29
3673 4613 1.001815 CCGACAGCAATTCACGGTTTT 60.002 47.619 0.00 0.00 38.97 2.43
3674 4614 0.591170 CCGACAGCAATTCACGGTTT 59.409 50.000 0.00 0.00 38.97 3.27
3675 4615 1.852067 GCCGACAGCAATTCACGGTT 61.852 55.000 0.00 0.00 44.48 4.44
3676 4616 2.325082 GCCGACAGCAATTCACGGT 61.325 57.895 0.00 0.00 44.48 4.83
3677 4617 2.480555 GCCGACAGCAATTCACGG 59.519 61.111 0.00 0.00 45.26 4.94
3686 4626 1.448985 TCAGGTTTTATGCCGACAGC 58.551 50.000 0.00 0.00 44.14 4.40
3687 4627 2.614057 GGATCAGGTTTTATGCCGACAG 59.386 50.000 0.00 0.00 0.00 3.51
3688 4628 2.026729 TGGATCAGGTTTTATGCCGACA 60.027 45.455 0.00 0.00 0.00 4.35
3689 4629 2.354821 GTGGATCAGGTTTTATGCCGAC 59.645 50.000 0.00 0.00 0.00 4.79
3690 4630 2.026729 TGTGGATCAGGTTTTATGCCGA 60.027 45.455 0.00 0.00 0.00 5.54
3691 4631 2.355756 CTGTGGATCAGGTTTTATGCCG 59.644 50.000 0.00 0.00 40.23 5.69
3692 4632 3.763897 AACTGTGGATCAGGTTTTATGCC 59.236 43.478 0.00 0.00 42.00 4.40
3693 4633 4.986622 GAACTGTGGATCAGGTTTTATGC 58.013 43.478 0.00 0.00 45.06 3.14


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.