Multiple sequence alignment - TraesCS4A01G313100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G313100 chr4A 100.000 4940 0 0 1 4940 603730539 603725600 0.000000e+00 9123
1 TraesCS4A01G313100 chr4A 75.291 344 83 2 3333 3675 738352989 738353331 3.960000e-36 163
2 TraesCS4A01G313100 chr5D 88.910 2092 210 18 2186 4270 560522538 560524614 0.000000e+00 2558
3 TraesCS4A01G313100 chr5D 87.318 1238 136 11 1034 2266 560521325 560522546 0.000000e+00 1397
4 TraesCS4A01G313100 chr6D 87.031 1758 216 7 2396 4143 60512424 60514179 0.000000e+00 1973
5 TraesCS4A01G313100 chr6D 86.565 1779 207 13 2396 4147 60520520 60518747 0.000000e+00 1932
6 TraesCS4A01G313100 chr6D 81.434 1255 163 36 1122 2351 60521741 60520532 0.000000e+00 963
7 TraesCS4A01G313100 chr6D 83.060 549 79 8 1810 2344 60511857 60512405 2.070000e-133 486
8 TraesCS4A01G313100 chr6B 85.748 1712 211 17 2396 4103 134808491 134810173 0.000000e+00 1779
9 TraesCS4A01G313100 chr6B 80.461 1346 192 37 1042 2344 134807155 134808472 0.000000e+00 963
10 TraesCS4A01G313100 chr5B 87.911 1216 129 12 2238 3451 711840593 711839394 0.000000e+00 1415
11 TraesCS4A01G313100 chr5B 93.895 688 42 0 1 688 583900875 583901562 0.000000e+00 1038
12 TraesCS4A01G313100 chr5B 88.550 131 15 0 2424 2554 712351728 712351858 5.120000e-35 159
13 TraesCS4A01G313100 chrUn 95.936 689 28 0 1 689 45573663 45574351 0.000000e+00 1118
14 TraesCS4A01G313100 chr7D 95.942 690 26 2 1 689 563660766 563661454 0.000000e+00 1118
15 TraesCS4A01G313100 chr7D 95.356 689 31 1 1 688 31364213 31364901 0.000000e+00 1094
16 TraesCS4A01G313100 chr7A 95.210 689 32 1 1 688 690103448 690104136 0.000000e+00 1088
17 TraesCS4A01G313100 chr5A 95.461 683 30 1 1 682 41965165 41965847 0.000000e+00 1088
18 TraesCS4A01G313100 chr5A 94.493 690 37 1 1 689 576276830 576276141 0.000000e+00 1062
19 TraesCS4A01G313100 chr5A 90.992 655 46 12 4294 4940 79276471 79275822 0.000000e+00 870
20 TraesCS4A01G313100 chr5A 88.872 647 58 8 4298 4940 608274118 608274754 0.000000e+00 784
21 TraesCS4A01G313100 chr2B 94.340 689 39 0 1 689 106874461 106873773 0.000000e+00 1057
22 TraesCS4A01G313100 chr7B 93.922 691 39 2 1 688 191681529 191682219 0.000000e+00 1040
23 TraesCS4A01G313100 chr3D 94.495 654 30 5 4292 4940 510910977 510910325 0.000000e+00 1003
24 TraesCS4A01G313100 chr3D 71.338 628 149 24 3293 3909 535579159 535578552 3.100000e-27 134
25 TraesCS4A01G313100 chr2D 94.172 652 31 6 4292 4939 68695773 68695125 0.000000e+00 987
26 TraesCS4A01G313100 chr2D 93.558 652 29 7 4292 4939 68594103 68593461 0.000000e+00 959
27 TraesCS4A01G313100 chr2D 93.303 657 25 12 4292 4939 68570486 68569840 0.000000e+00 952
28 TraesCS4A01G313100 chr6A 81.346 1233 188 20 1122 2344 77242973 77241773 0.000000e+00 965
29 TraesCS4A01G313100 chr6A 85.841 791 110 2 2460 3249 77167092 77167881 0.000000e+00 839
30 TraesCS4A01G313100 chr6A 81.344 863 137 16 1492 2345 77166185 77167032 0.000000e+00 680
31 TraesCS4A01G313100 chr6A 87.090 488 63 0 3280 3767 77168976 77169463 2.010000e-153 553
32 TraesCS4A01G313100 chr6A 89.041 365 38 2 2396 2759 77241754 77241391 7.540000e-123 451
33 TraesCS4A01G313100 chr6A 87.713 293 27 2 3856 4139 77241383 77241091 2.850000e-87 333
34 TraesCS4A01G313100 chr6A 80.233 344 45 12 1042 1375 77165212 77165542 2.300000e-58 237
35 TraesCS4A01G313100 chr2A 91.424 653 43 11 4294 4940 25473393 25472748 0.000000e+00 883
36 TraesCS4A01G313100 chr2A 90.923 650 49 8 4295 4940 25461749 25461106 0.000000e+00 865
37 TraesCS4A01G313100 chr2A 90.839 644 50 8 4298 4940 136636747 136637382 0.000000e+00 854
38 TraesCS4A01G313100 chr3B 87.692 65 6 2 3838 3901 707044237 707044174 1.910000e-09 75


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G313100 chr4A 603725600 603730539 4939 True 9123.00 9123 100.000000 1 4940 1 chr4A.!!$R1 4939
1 TraesCS4A01G313100 chr5D 560521325 560524614 3289 False 1977.50 2558 88.114000 1034 4270 2 chr5D.!!$F1 3236
2 TraesCS4A01G313100 chr6D 60518747 60521741 2994 True 1447.50 1932 83.999500 1122 4147 2 chr6D.!!$R1 3025
3 TraesCS4A01G313100 chr6D 60511857 60514179 2322 False 1229.50 1973 85.045500 1810 4143 2 chr6D.!!$F1 2333
4 TraesCS4A01G313100 chr6B 134807155 134810173 3018 False 1371.00 1779 83.104500 1042 4103 2 chr6B.!!$F1 3061
5 TraesCS4A01G313100 chr5B 711839394 711840593 1199 True 1415.00 1415 87.911000 2238 3451 1 chr5B.!!$R1 1213
6 TraesCS4A01G313100 chr5B 583900875 583901562 687 False 1038.00 1038 93.895000 1 688 1 chr5B.!!$F1 687
7 TraesCS4A01G313100 chrUn 45573663 45574351 688 False 1118.00 1118 95.936000 1 689 1 chrUn.!!$F1 688
8 TraesCS4A01G313100 chr7D 563660766 563661454 688 False 1118.00 1118 95.942000 1 689 1 chr7D.!!$F2 688
9 TraesCS4A01G313100 chr7D 31364213 31364901 688 False 1094.00 1094 95.356000 1 688 1 chr7D.!!$F1 687
10 TraesCS4A01G313100 chr7A 690103448 690104136 688 False 1088.00 1088 95.210000 1 688 1 chr7A.!!$F1 687
11 TraesCS4A01G313100 chr5A 41965165 41965847 682 False 1088.00 1088 95.461000 1 682 1 chr5A.!!$F1 681
12 TraesCS4A01G313100 chr5A 576276141 576276830 689 True 1062.00 1062 94.493000 1 689 1 chr5A.!!$R2 688
13 TraesCS4A01G313100 chr5A 79275822 79276471 649 True 870.00 870 90.992000 4294 4940 1 chr5A.!!$R1 646
14 TraesCS4A01G313100 chr5A 608274118 608274754 636 False 784.00 784 88.872000 4298 4940 1 chr5A.!!$F2 642
15 TraesCS4A01G313100 chr2B 106873773 106874461 688 True 1057.00 1057 94.340000 1 689 1 chr2B.!!$R1 688
16 TraesCS4A01G313100 chr7B 191681529 191682219 690 False 1040.00 1040 93.922000 1 688 1 chr7B.!!$F1 687
17 TraesCS4A01G313100 chr3D 510910325 510910977 652 True 1003.00 1003 94.495000 4292 4940 1 chr3D.!!$R1 648
18 TraesCS4A01G313100 chr2D 68695125 68695773 648 True 987.00 987 94.172000 4292 4939 1 chr2D.!!$R3 647
19 TraesCS4A01G313100 chr2D 68593461 68594103 642 True 959.00 959 93.558000 4292 4939 1 chr2D.!!$R2 647
20 TraesCS4A01G313100 chr2D 68569840 68570486 646 True 952.00 952 93.303000 4292 4939 1 chr2D.!!$R1 647
21 TraesCS4A01G313100 chr6A 77241091 77242973 1882 True 583.00 965 86.033333 1122 4139 3 chr6A.!!$R1 3017
22 TraesCS4A01G313100 chr6A 77165212 77169463 4251 False 577.25 839 83.627000 1042 3767 4 chr6A.!!$F1 2725
23 TraesCS4A01G313100 chr2A 25472748 25473393 645 True 883.00 883 91.424000 4294 4940 1 chr2A.!!$R2 646
24 TraesCS4A01G313100 chr2A 25461106 25461749 643 True 865.00 865 90.923000 4295 4940 1 chr2A.!!$R1 645
25 TraesCS4A01G313100 chr2A 136636747 136637382 635 False 854.00 854 90.839000 4298 4940 1 chr2A.!!$F1 642

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
767 773 0.037326 CGTGCACATCCGGGCTATAT 60.037 55.000 18.64 0.00 0.0 0.86 F
1015 1021 0.032130 CTATATGTGCCGTGCGGAGT 59.968 55.000 15.45 0.00 37.5 3.85 F
1803 2364 0.099791 CGGTTGCGTCTTGTTGGTTT 59.900 50.000 0.00 0.00 0.0 3.27 F
2783 3462 1.003464 GCTGCCATCAAATTTTGGGGT 59.997 47.619 16.75 1.51 33.4 4.95 F
3249 3928 0.613572 TCGTACTGGATCCTGGCACA 60.614 55.000 21.40 8.08 0.0 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2205 2772 0.471780 TCAGGTGGTTGCCAGAGAGA 60.472 55.000 0.00 0.0 32.34 3.10 R
2763 3442 1.003464 ACCCCAAAATTTGATGGCAGC 59.997 47.619 7.37 0.0 35.28 5.25 R
3230 3909 0.613572 TGTGCCAGGATCCAGTACGA 60.614 55.000 15.82 3.3 0.00 3.43 R
3820 5566 3.190953 GCTTTCTTGAAGAGCAGAGCAAT 59.809 43.478 13.34 0.0 37.57 3.56 R
4847 6634 0.108329 TGCTAGACTAGGCCAAACGC 60.108 55.000 5.01 0.0 0.00 4.84 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
154 155 2.159179 AGGGTTCTTGCAAAGTTGGT 57.841 45.000 0.00 0.00 46.34 3.67
422 426 2.446036 GGGGCGGAGGTGGTAGAT 60.446 66.667 0.00 0.00 0.00 1.98
581 585 4.346418 ACAAGATTGGATCGAGGCTAGATT 59.654 41.667 11.54 0.00 0.00 2.40
603 608 8.432805 AGATTGATCGGTTACAGAAGGATATTT 58.567 33.333 0.00 0.00 0.00 1.40
618 623 6.347061 AGGATATTTGGGAGAGGTTGAAAT 57.653 37.500 0.00 0.00 0.00 2.17
689 695 7.827236 CCCTATACAACAACTAATTCCAACAGA 59.173 37.037 0.00 0.00 0.00 3.41
690 696 9.396022 CCTATACAACAACTAATTCCAACAGAT 57.604 33.333 0.00 0.00 0.00 2.90
693 699 6.981722 ACAACAACTAATTCCAACAGATTCC 58.018 36.000 0.00 0.00 0.00 3.01
694 700 6.777580 ACAACAACTAATTCCAACAGATTCCT 59.222 34.615 0.00 0.00 0.00 3.36
695 701 7.040409 ACAACAACTAATTCCAACAGATTCCTC 60.040 37.037 0.00 0.00 0.00 3.71
696 702 5.946377 ACAACTAATTCCAACAGATTCCTCC 59.054 40.000 0.00 0.00 0.00 4.30
697 703 6.183347 CAACTAATTCCAACAGATTCCTCCT 58.817 40.000 0.00 0.00 0.00 3.69
698 704 5.995446 ACTAATTCCAACAGATTCCTCCTC 58.005 41.667 0.00 0.00 0.00 3.71
699 705 3.550437 ATTCCAACAGATTCCTCCTCG 57.450 47.619 0.00 0.00 0.00 4.63
700 706 2.231716 TCCAACAGATTCCTCCTCGA 57.768 50.000 0.00 0.00 0.00 4.04
701 707 2.752030 TCCAACAGATTCCTCCTCGAT 58.248 47.619 0.00 0.00 0.00 3.59
702 708 2.432146 TCCAACAGATTCCTCCTCGATG 59.568 50.000 0.00 0.00 0.00 3.84
703 709 2.208431 CAACAGATTCCTCCTCGATGC 58.792 52.381 0.00 0.00 0.00 3.91
704 710 1.489481 ACAGATTCCTCCTCGATGCA 58.511 50.000 0.00 0.00 0.00 3.96
705 711 2.045524 ACAGATTCCTCCTCGATGCAT 58.954 47.619 0.00 0.00 0.00 3.96
706 712 2.224233 ACAGATTCCTCCTCGATGCATG 60.224 50.000 2.46 0.00 0.00 4.06
707 713 1.155042 GATTCCTCCTCGATGCATGC 58.845 55.000 11.82 11.82 0.00 4.06
708 714 0.602106 ATTCCTCCTCGATGCATGCG 60.602 55.000 14.09 8.11 0.00 4.73
709 715 1.960040 TTCCTCCTCGATGCATGCGT 61.960 55.000 13.43 13.43 0.00 5.24
710 716 1.522355 CCTCCTCGATGCATGCGTT 60.522 57.895 14.88 2.76 0.00 4.84
711 717 1.493950 CCTCCTCGATGCATGCGTTC 61.494 60.000 14.88 11.91 0.00 3.95
712 718 1.493950 CTCCTCGATGCATGCGTTCC 61.494 60.000 14.88 0.78 0.00 3.62
713 719 2.537560 CCTCGATGCATGCGTTCCC 61.538 63.158 14.88 0.00 0.00 3.97
714 720 1.522355 CTCGATGCATGCGTTCCCT 60.522 57.895 14.88 0.00 0.00 4.20
715 721 1.078497 TCGATGCATGCGTTCCCTT 60.078 52.632 14.88 0.00 0.00 3.95
716 722 0.676466 TCGATGCATGCGTTCCCTTT 60.676 50.000 14.88 0.00 0.00 3.11
717 723 0.523968 CGATGCATGCGTTCCCTTTG 60.524 55.000 14.88 0.00 0.00 2.77
718 724 0.810648 GATGCATGCGTTCCCTTTGA 59.189 50.000 14.88 0.00 0.00 2.69
719 725 1.202114 GATGCATGCGTTCCCTTTGAA 59.798 47.619 14.88 0.00 0.00 2.69
720 726 0.597568 TGCATGCGTTCCCTTTGAAG 59.402 50.000 14.09 0.00 32.37 3.02
721 727 0.733909 GCATGCGTTCCCTTTGAAGC 60.734 55.000 0.00 0.00 32.37 3.86
722 728 0.597568 CATGCGTTCCCTTTGAAGCA 59.402 50.000 0.00 0.00 39.62 3.91
723 729 1.203052 CATGCGTTCCCTTTGAAGCAT 59.797 47.619 0.00 0.00 42.92 3.79
724 730 0.597568 TGCGTTCCCTTTGAAGCATG 59.402 50.000 0.00 0.00 34.41 4.06
725 731 0.733909 GCGTTCCCTTTGAAGCATGC 60.734 55.000 10.51 10.51 32.37 4.06
726 732 0.597568 CGTTCCCTTTGAAGCATGCA 59.402 50.000 21.98 0.00 32.37 3.96
727 733 1.401931 CGTTCCCTTTGAAGCATGCAG 60.402 52.381 21.98 7.79 32.37 4.41
728 734 1.067354 GTTCCCTTTGAAGCATGCAGG 60.067 52.381 21.98 16.84 32.37 4.85
729 735 1.217244 CCCTTTGAAGCATGCAGGC 59.783 57.895 21.98 17.09 0.00 4.85
731 737 0.172803 CCTTTGAAGCATGCAGGCTC 59.827 55.000 27.97 19.40 45.07 4.70
732 738 0.885879 CTTTGAAGCATGCAGGCTCA 59.114 50.000 27.97 21.69 45.07 4.26
733 739 1.476891 CTTTGAAGCATGCAGGCTCAT 59.523 47.619 27.97 12.47 45.07 2.90
734 740 1.100510 TTGAAGCATGCAGGCTCATC 58.899 50.000 27.97 21.30 45.07 2.92
735 741 0.750546 TGAAGCATGCAGGCTCATCC 60.751 55.000 27.97 15.90 45.07 3.51
736 742 0.750546 GAAGCATGCAGGCTCATCCA 60.751 55.000 27.97 0.00 45.07 3.41
737 743 0.106167 AAGCATGCAGGCTCATCCAT 60.106 50.000 27.97 6.76 45.07 3.41
738 744 0.537600 AGCATGCAGGCTCATCCATC 60.538 55.000 22.16 0.00 41.05 3.51
739 745 1.524863 GCATGCAGGCTCATCCATCC 61.525 60.000 17.57 0.00 37.29 3.51
740 746 0.179001 CATGCAGGCTCATCCATCCA 60.179 55.000 0.00 0.00 37.29 3.41
741 747 0.110678 ATGCAGGCTCATCCATCCAG 59.889 55.000 0.00 0.00 37.29 3.86
742 748 1.276859 TGCAGGCTCATCCATCCAGT 61.277 55.000 0.00 0.00 37.29 4.00
743 749 0.534652 GCAGGCTCATCCATCCAGTC 60.535 60.000 0.00 0.00 37.29 3.51
744 750 0.249784 CAGGCTCATCCATCCAGTCG 60.250 60.000 0.00 0.00 37.29 4.18
745 751 0.397675 AGGCTCATCCATCCAGTCGA 60.398 55.000 0.00 0.00 37.29 4.20
746 752 0.249657 GGCTCATCCATCCAGTCGAC 60.250 60.000 7.70 7.70 34.01 4.20
747 753 0.596083 GCTCATCCATCCAGTCGACG 60.596 60.000 10.46 5.16 0.00 5.12
748 754 0.596083 CTCATCCATCCAGTCGACGC 60.596 60.000 10.46 0.00 0.00 5.19
749 755 1.946156 CATCCATCCAGTCGACGCG 60.946 63.158 10.46 3.53 0.00 6.01
750 756 2.415608 ATCCATCCAGTCGACGCGT 61.416 57.895 13.85 13.85 0.00 6.01
751 757 2.613739 ATCCATCCAGTCGACGCGTG 62.614 60.000 20.70 9.70 0.00 5.34
752 758 3.545481 CATCCAGTCGACGCGTGC 61.545 66.667 20.70 7.65 0.00 5.34
753 759 4.050934 ATCCAGTCGACGCGTGCA 62.051 61.111 20.70 0.00 0.00 4.57
754 760 4.994201 TCCAGTCGACGCGTGCAC 62.994 66.667 20.70 13.33 0.00 4.57
756 762 3.105782 CAGTCGACGCGTGCACAT 61.106 61.111 20.70 0.56 0.00 3.21
757 763 2.805353 AGTCGACGCGTGCACATC 60.805 61.111 20.70 10.01 0.00 3.06
758 764 3.838795 GTCGACGCGTGCACATCC 61.839 66.667 20.70 0.00 0.00 3.51
764 770 4.830765 GCGTGCACATCCGGGCTA 62.831 66.667 18.64 0.00 0.00 3.93
765 771 2.108976 CGTGCACATCCGGGCTAT 59.891 61.111 18.64 0.00 0.00 2.97
766 772 1.365999 CGTGCACATCCGGGCTATA 59.634 57.895 18.64 0.00 0.00 1.31
767 773 0.037326 CGTGCACATCCGGGCTATAT 60.037 55.000 18.64 0.00 0.00 0.86
768 774 1.442769 GTGCACATCCGGGCTATATG 58.557 55.000 13.17 0.00 0.00 1.78
769 775 1.001974 GTGCACATCCGGGCTATATGA 59.998 52.381 13.17 0.00 0.00 2.15
770 776 1.696884 TGCACATCCGGGCTATATGAA 59.303 47.619 0.00 0.00 0.00 2.57
771 777 2.289631 TGCACATCCGGGCTATATGAAG 60.290 50.000 0.00 0.00 0.00 3.02
772 778 2.028112 GCACATCCGGGCTATATGAAGA 60.028 50.000 0.00 0.00 0.00 2.87
773 779 3.854666 CACATCCGGGCTATATGAAGAG 58.145 50.000 0.00 0.00 0.00 2.85
774 780 3.259374 CACATCCGGGCTATATGAAGAGT 59.741 47.826 0.00 0.00 0.00 3.24
775 781 4.462834 CACATCCGGGCTATATGAAGAGTA 59.537 45.833 0.00 0.00 0.00 2.59
776 782 4.707448 ACATCCGGGCTATATGAAGAGTAG 59.293 45.833 0.00 0.00 0.00 2.57
777 783 4.652679 TCCGGGCTATATGAAGAGTAGA 57.347 45.455 0.00 0.00 0.00 2.59
778 784 4.333690 TCCGGGCTATATGAAGAGTAGAC 58.666 47.826 0.00 0.00 0.00 2.59
779 785 4.043059 TCCGGGCTATATGAAGAGTAGACT 59.957 45.833 0.00 0.00 0.00 3.24
780 786 5.250082 TCCGGGCTATATGAAGAGTAGACTA 59.750 44.000 0.00 0.00 0.00 2.59
781 787 5.354792 CCGGGCTATATGAAGAGTAGACTAC 59.645 48.000 4.32 4.32 0.00 2.73
782 788 6.174760 CGGGCTATATGAAGAGTAGACTACT 58.825 44.000 15.13 15.13 42.86 2.57
783 789 6.092944 CGGGCTATATGAAGAGTAGACTACTG 59.907 46.154 19.90 3.46 39.59 2.74
784 790 6.943718 GGGCTATATGAAGAGTAGACTACTGT 59.056 42.308 19.90 13.14 39.59 3.55
785 791 8.102047 GGGCTATATGAAGAGTAGACTACTGTA 58.898 40.741 19.90 2.37 39.59 2.74
786 792 9.158233 GGCTATATGAAGAGTAGACTACTGTAG 57.842 40.741 19.90 13.13 39.59 2.74
787 793 8.662141 GCTATATGAAGAGTAGACTACTGTAGC 58.338 40.741 19.90 15.14 39.59 3.58
788 794 9.713713 CTATATGAAGAGTAGACTACTGTAGCA 57.286 37.037 19.90 16.29 39.59 3.49
791 797 7.789273 TGAAGAGTAGACTACTGTAGCATAC 57.211 40.000 19.90 15.68 43.42 2.39
792 798 7.566569 TGAAGAGTAGACTACTGTAGCATACT 58.433 38.462 19.90 22.51 43.54 2.12
793 799 8.047911 TGAAGAGTAGACTACTGTAGCATACTT 58.952 37.037 19.90 13.00 43.54 2.24
794 800 7.795482 AGAGTAGACTACTGTAGCATACTTG 57.205 40.000 19.90 1.05 43.54 3.16
795 801 7.566569 AGAGTAGACTACTGTAGCATACTTGA 58.433 38.462 19.90 3.68 43.54 3.02
796 802 8.215050 AGAGTAGACTACTGTAGCATACTTGAT 58.785 37.037 19.90 14.62 43.54 2.57
797 803 8.385898 AGTAGACTACTGTAGCATACTTGATC 57.614 38.462 14.47 7.21 43.54 2.92
798 804 8.215050 AGTAGACTACTGTAGCATACTTGATCT 58.785 37.037 14.47 12.41 43.54 2.75
799 805 7.270757 AGACTACTGTAGCATACTTGATCTG 57.729 40.000 14.55 0.00 43.54 2.90
800 806 5.837437 ACTACTGTAGCATACTTGATCTGC 58.163 41.667 14.55 0.00 43.54 4.26
802 808 6.773200 ACTACTGTAGCATACTTGATCTGCTA 59.227 38.462 14.55 8.99 44.08 3.49
807 813 4.115516 AGCATACTTGATCTGCTACAACG 58.884 43.478 4.69 0.00 44.08 4.10
808 814 3.302740 GCATACTTGATCTGCTACAACGC 60.303 47.826 0.00 0.00 33.15 4.84
809 815 1.726853 ACTTGATCTGCTACAACGCC 58.273 50.000 0.00 0.00 0.00 5.68
810 816 1.009829 CTTGATCTGCTACAACGCCC 58.990 55.000 0.00 0.00 0.00 6.13
811 817 0.613260 TTGATCTGCTACAACGCCCT 59.387 50.000 0.00 0.00 0.00 5.19
812 818 0.175760 TGATCTGCTACAACGCCCTC 59.824 55.000 0.00 0.00 0.00 4.30
813 819 0.175760 GATCTGCTACAACGCCCTCA 59.824 55.000 0.00 0.00 0.00 3.86
814 820 0.833287 ATCTGCTACAACGCCCTCAT 59.167 50.000 0.00 0.00 0.00 2.90
815 821 0.108186 TCTGCTACAACGCCCTCATG 60.108 55.000 0.00 0.00 0.00 3.07
816 822 1.709147 CTGCTACAACGCCCTCATGC 61.709 60.000 0.00 0.00 0.00 4.06
817 823 1.450312 GCTACAACGCCCTCATGCT 60.450 57.895 0.00 0.00 0.00 3.79
818 824 1.432270 GCTACAACGCCCTCATGCTC 61.432 60.000 0.00 0.00 0.00 4.26
819 825 0.108186 CTACAACGCCCTCATGCTCA 60.108 55.000 0.00 0.00 0.00 4.26
820 826 0.108186 TACAACGCCCTCATGCTCAG 60.108 55.000 0.00 0.00 0.00 3.35
821 827 2.110967 CAACGCCCTCATGCTCAGG 61.111 63.158 0.00 0.00 0.00 3.86
838 844 2.815647 GGCACTGGCGCTGTCTAC 60.816 66.667 7.64 0.00 42.47 2.59
839 845 2.815647 GCACTGGCGCTGTCTACC 60.816 66.667 7.64 0.00 0.00 3.18
840 846 2.973899 CACTGGCGCTGTCTACCT 59.026 61.111 7.64 0.00 0.00 3.08
841 847 1.446792 CACTGGCGCTGTCTACCTG 60.447 63.158 7.64 0.00 0.00 4.00
842 848 2.185350 CTGGCGCTGTCTACCTGG 59.815 66.667 7.64 0.00 0.00 4.45
843 849 3.376935 CTGGCGCTGTCTACCTGGG 62.377 68.421 7.64 0.00 0.00 4.45
844 850 4.840005 GGCGCTGTCTACCTGGGC 62.840 72.222 7.64 0.00 46.11 5.36
846 852 3.760035 CGCTGTCTACCTGGGCGT 61.760 66.667 0.00 0.00 40.78 5.68
847 853 2.125512 GCTGTCTACCTGGGCGTG 60.126 66.667 0.00 0.00 0.00 5.34
848 854 2.579201 CTGTCTACCTGGGCGTGG 59.421 66.667 0.00 0.00 0.00 4.94
849 855 3.665675 CTGTCTACCTGGGCGTGGC 62.666 68.421 0.00 0.00 0.00 5.01
850 856 3.702048 GTCTACCTGGGCGTGGCA 61.702 66.667 0.00 0.00 0.00 4.92
851 857 2.687200 TCTACCTGGGCGTGGCAT 60.687 61.111 0.00 0.00 0.00 4.40
852 858 2.514592 CTACCTGGGCGTGGCATG 60.515 66.667 1.31 1.31 0.00 4.06
853 859 3.326578 TACCTGGGCGTGGCATGT 61.327 61.111 8.75 0.00 0.00 3.21
854 860 2.819984 CTACCTGGGCGTGGCATGTT 62.820 60.000 8.75 0.00 0.00 2.71
855 861 3.751246 CCTGGGCGTGGCATGTTG 61.751 66.667 8.75 0.00 0.00 3.33
856 862 3.751246 CTGGGCGTGGCATGTTGG 61.751 66.667 8.75 0.00 0.00 3.77
865 871 2.339712 GCATGTTGGCCACCACAC 59.660 61.111 12.46 5.33 30.78 3.82
866 872 2.497173 GCATGTTGGCCACCACACA 61.497 57.895 12.46 11.37 30.78 3.72
867 873 1.363443 CATGTTGGCCACCACACAC 59.637 57.895 12.46 4.16 31.40 3.82
868 874 1.832167 ATGTTGGCCACCACACACC 60.832 57.895 12.46 0.00 31.40 4.16
869 875 3.591835 GTTGGCCACCACACACCG 61.592 66.667 3.88 0.00 30.78 4.94
873 879 4.626081 GCCACCACACACCGCTCT 62.626 66.667 0.00 0.00 0.00 4.09
874 880 2.111043 CCACCACACACCGCTCTT 59.889 61.111 0.00 0.00 0.00 2.85
875 881 2.253758 CCACCACACACCGCTCTTG 61.254 63.158 0.00 0.00 0.00 3.02
876 882 2.591715 ACCACACACCGCTCTTGC 60.592 61.111 0.00 0.00 0.00 4.01
877 883 3.357079 CCACACACCGCTCTTGCC 61.357 66.667 0.00 0.00 35.36 4.52
878 884 2.281070 CACACACCGCTCTTGCCT 60.281 61.111 0.00 0.00 35.36 4.75
879 885 2.031163 ACACACCGCTCTTGCCTC 59.969 61.111 0.00 0.00 35.36 4.70
880 886 2.743928 CACACCGCTCTTGCCTCC 60.744 66.667 0.00 0.00 35.36 4.30
881 887 2.925170 ACACCGCTCTTGCCTCCT 60.925 61.111 0.00 0.00 35.36 3.69
882 888 2.435586 CACCGCTCTTGCCTCCTG 60.436 66.667 0.00 0.00 35.36 3.86
883 889 4.400961 ACCGCTCTTGCCTCCTGC 62.401 66.667 0.00 0.00 41.77 4.85
893 899 2.682893 GCCTCCTGCATTACTGTCG 58.317 57.895 0.00 0.00 40.77 4.35
894 900 1.432270 GCCTCCTGCATTACTGTCGC 61.432 60.000 0.00 0.00 40.77 5.19
895 901 0.811616 CCTCCTGCATTACTGTCGCC 60.812 60.000 0.00 0.00 0.00 5.54
896 902 1.148157 CTCCTGCATTACTGTCGCCG 61.148 60.000 0.00 0.00 0.00 6.46
897 903 1.447838 CCTGCATTACTGTCGCCGT 60.448 57.895 0.00 0.00 0.00 5.68
898 904 1.695893 CCTGCATTACTGTCGCCGTG 61.696 60.000 0.00 0.00 0.00 4.94
899 905 1.005512 TGCATTACTGTCGCCGTGT 60.006 52.632 0.00 0.00 0.00 4.49
900 906 1.011968 TGCATTACTGTCGCCGTGTC 61.012 55.000 0.00 0.00 0.00 3.67
901 907 0.736325 GCATTACTGTCGCCGTGTCT 60.736 55.000 0.00 0.00 0.00 3.41
902 908 1.710013 CATTACTGTCGCCGTGTCTT 58.290 50.000 0.00 0.00 0.00 3.01
903 909 1.390123 CATTACTGTCGCCGTGTCTTG 59.610 52.381 0.00 0.00 0.00 3.02
904 910 0.942410 TTACTGTCGCCGTGTCTTGC 60.942 55.000 0.00 0.00 0.00 4.01
905 911 2.758770 TACTGTCGCCGTGTCTTGCC 62.759 60.000 0.00 0.00 0.00 4.52
911 917 2.126071 CCGTGTCTTGCCGTCGAT 60.126 61.111 0.00 0.00 0.00 3.59
912 918 2.158959 CCGTGTCTTGCCGTCGATC 61.159 63.158 0.00 0.00 0.00 3.69
913 919 1.443702 CGTGTCTTGCCGTCGATCA 60.444 57.895 0.00 0.00 0.00 2.92
914 920 1.674611 CGTGTCTTGCCGTCGATCAC 61.675 60.000 0.00 0.00 0.00 3.06
915 921 0.388649 GTGTCTTGCCGTCGATCACT 60.389 55.000 0.00 0.00 0.00 3.41
916 922 0.317160 TGTCTTGCCGTCGATCACTT 59.683 50.000 0.00 0.00 0.00 3.16
917 923 0.992802 GTCTTGCCGTCGATCACTTC 59.007 55.000 0.00 0.00 0.00 3.01
918 924 0.601057 TCTTGCCGTCGATCACTTCA 59.399 50.000 0.00 0.00 0.00 3.02
919 925 1.204704 TCTTGCCGTCGATCACTTCAT 59.795 47.619 0.00 0.00 0.00 2.57
920 926 1.590238 CTTGCCGTCGATCACTTCATC 59.410 52.381 0.00 0.00 0.00 2.92
921 927 0.530288 TGCCGTCGATCACTTCATCA 59.470 50.000 0.00 0.00 0.00 3.07
922 928 1.136891 TGCCGTCGATCACTTCATCAT 59.863 47.619 0.00 0.00 0.00 2.45
923 929 1.789464 GCCGTCGATCACTTCATCATC 59.211 52.381 0.00 0.00 0.00 2.92
924 930 2.799562 GCCGTCGATCACTTCATCATCA 60.800 50.000 0.00 0.00 0.00 3.07
925 931 3.048501 CCGTCGATCACTTCATCATCAG 58.951 50.000 0.00 0.00 0.00 2.90
926 932 3.489908 CCGTCGATCACTTCATCATCAGT 60.490 47.826 0.00 0.00 0.00 3.41
927 933 3.485013 CGTCGATCACTTCATCATCAGTG 59.515 47.826 0.00 0.00 41.65 3.66
932 938 4.198028 TCACTTCATCATCAGTGAGTGG 57.802 45.455 0.00 0.00 43.63 4.00
933 939 2.676839 CACTTCATCATCAGTGAGTGGC 59.323 50.000 0.00 0.00 42.74 5.01
934 940 2.570752 ACTTCATCATCAGTGAGTGGCT 59.429 45.455 0.00 0.00 37.87 4.75
935 941 2.685850 TCATCATCAGTGAGTGGCTG 57.314 50.000 0.00 0.00 37.87 4.85
936 942 2.181975 TCATCATCAGTGAGTGGCTGA 58.818 47.619 0.00 0.00 45.59 4.26
937 943 2.167900 TCATCATCAGTGAGTGGCTGAG 59.832 50.000 0.00 0.00 44.86 3.35
938 944 0.248565 TCATCAGTGAGTGGCTGAGC 59.751 55.000 0.00 0.00 44.86 4.26
939 945 4.384023 ATCATCAGTGAGTGGCTGAGCC 62.384 54.545 18.46 18.46 44.86 4.70
950 956 3.683581 GCTGAGCCAAAACGATGAC 57.316 52.632 0.00 0.00 0.00 3.06
951 957 1.160137 GCTGAGCCAAAACGATGACT 58.840 50.000 0.00 0.00 0.00 3.41
952 958 1.129437 GCTGAGCCAAAACGATGACTC 59.871 52.381 0.00 0.00 0.00 3.36
953 959 1.734465 CTGAGCCAAAACGATGACTCC 59.266 52.381 0.00 0.00 0.00 3.85
954 960 0.721718 GAGCCAAAACGATGACTCCG 59.278 55.000 0.00 0.00 0.00 4.63
955 961 0.673644 AGCCAAAACGATGACTCCGG 60.674 55.000 0.00 0.00 0.00 5.14
956 962 1.644786 GCCAAAACGATGACTCCGGG 61.645 60.000 0.00 0.00 0.00 5.73
957 963 1.644786 CCAAAACGATGACTCCGGGC 61.645 60.000 0.00 0.00 0.00 6.13
958 964 1.376812 AAAACGATGACTCCGGGCC 60.377 57.895 0.00 0.00 0.00 5.80
959 965 3.659089 AAACGATGACTCCGGGCCG 62.659 63.158 21.46 21.46 0.00 6.13
961 967 4.873129 CGATGACTCCGGGCCGTG 62.873 72.222 26.32 19.14 0.00 4.94
962 968 4.530857 GATGACTCCGGGCCGTGG 62.531 72.222 26.32 18.67 0.00 4.94
974 980 2.747460 CCGTGGACCGACCGACTA 60.747 66.667 0.09 0.00 42.61 2.59
975 981 2.334946 CCGTGGACCGACCGACTAA 61.335 63.158 0.09 0.00 42.61 2.24
976 982 1.660560 CCGTGGACCGACCGACTAAT 61.661 60.000 0.09 0.00 42.61 1.73
977 983 0.171903 CGTGGACCGACCGACTAATT 59.828 55.000 0.00 0.00 42.61 1.40
978 984 1.401552 CGTGGACCGACCGACTAATTA 59.598 52.381 0.00 0.00 42.61 1.40
979 985 2.033801 CGTGGACCGACCGACTAATTAT 59.966 50.000 0.00 0.00 42.61 1.28
980 986 3.250762 CGTGGACCGACCGACTAATTATA 59.749 47.826 0.00 0.00 42.61 0.98
981 987 4.261155 CGTGGACCGACCGACTAATTATAA 60.261 45.833 0.00 0.00 42.61 0.98
982 988 5.563475 CGTGGACCGACCGACTAATTATAAT 60.563 44.000 0.00 0.00 42.61 1.28
983 989 6.348458 CGTGGACCGACCGACTAATTATAATA 60.348 42.308 0.00 0.00 42.61 0.98
984 990 7.370383 GTGGACCGACCGACTAATTATAATAA 58.630 38.462 0.00 0.00 42.61 1.40
985 991 7.867403 GTGGACCGACCGACTAATTATAATAAA 59.133 37.037 0.00 0.00 42.61 1.40
986 992 8.587608 TGGACCGACCGACTAATTATAATAAAT 58.412 33.333 0.00 0.00 42.61 1.40
1006 1012 6.884280 AAATAAACTGGAGCTATATGTGCC 57.116 37.500 0.00 0.00 0.00 5.01
1007 1013 2.533266 AACTGGAGCTATATGTGCCG 57.467 50.000 0.00 0.00 0.00 5.69
1008 1014 1.414158 ACTGGAGCTATATGTGCCGT 58.586 50.000 0.00 0.00 0.00 5.68
1009 1015 1.069204 ACTGGAGCTATATGTGCCGTG 59.931 52.381 0.00 0.00 0.00 4.94
1010 1016 0.249868 TGGAGCTATATGTGCCGTGC 60.250 55.000 0.00 0.00 0.00 5.34
1011 1017 1.284982 GGAGCTATATGTGCCGTGCG 61.285 60.000 0.00 0.00 0.00 5.34
1012 1018 1.284982 GAGCTATATGTGCCGTGCGG 61.285 60.000 6.22 6.22 38.57 5.69
1013 1019 1.300620 GCTATATGTGCCGTGCGGA 60.301 57.895 15.45 0.00 37.50 5.54
1014 1020 1.284982 GCTATATGTGCCGTGCGGAG 61.285 60.000 15.45 1.97 37.50 4.63
1015 1021 0.032130 CTATATGTGCCGTGCGGAGT 59.968 55.000 15.45 0.00 37.50 3.85
1016 1022 0.249280 TATATGTGCCGTGCGGAGTG 60.249 55.000 15.45 0.00 37.50 3.51
1031 1037 4.655527 GTGCGCACACTACTGTCT 57.344 55.556 34.52 0.00 43.85 3.41
1032 1038 3.786809 GTGCGCACACTACTGTCTA 57.213 52.632 34.52 0.00 43.85 2.59
1082 1088 3.780173 GCTGCTCCTCCTCGCCTT 61.780 66.667 0.00 0.00 0.00 4.35
1088 1094 4.194720 CCTCCTCGCCTTCGTCGG 62.195 72.222 0.00 0.00 36.96 4.79
1089 1095 4.856607 CTCCTCGCCTTCGTCGGC 62.857 72.222 7.52 7.52 46.68 5.54
1188 1215 2.203070 GGCATCACCGGCGAGATT 60.203 61.111 9.30 0.00 0.00 2.40
1227 1254 1.421485 CTCATGGCGCAAAGACGAC 59.579 57.895 10.83 0.00 43.05 4.34
1228 1255 2.096406 CATGGCGCAAAGACGACG 59.904 61.111 10.83 0.00 46.80 5.12
1229 1256 2.357034 ATGGCGCAAAGACGACGT 60.357 55.556 10.83 0.00 46.80 4.34
1230 1257 2.380410 ATGGCGCAAAGACGACGTC 61.380 57.895 20.25 20.25 46.80 4.34
1277 1304 4.641645 CAGCAACCGGACTGGCCA 62.642 66.667 9.46 4.71 43.94 5.36
1278 1305 3.650950 AGCAACCGGACTGGCCAT 61.651 61.111 9.46 0.00 43.94 4.40
1279 1306 2.270850 GCAACCGGACTGGCCATA 59.729 61.111 9.46 0.00 43.94 2.74
1280 1307 2.112815 GCAACCGGACTGGCCATAC 61.113 63.158 9.46 2.85 43.94 2.39
1344 1371 5.249420 GGTGAGATAAGTCCTTCTTTGCTT 58.751 41.667 0.00 0.00 37.56 3.91
1378 1580 1.835531 TGGAGCATCTTGATCTCAGCA 59.164 47.619 0.00 0.00 32.54 4.41
1379 1581 2.237893 TGGAGCATCTTGATCTCAGCAA 59.762 45.455 0.00 0.00 32.54 3.91
1387 1589 2.259266 TGATCTCAGCAACAACAGCA 57.741 45.000 0.00 0.00 0.00 4.41
1424 1635 0.318441 GGCTTTCTGGGTTCTTTGGC 59.682 55.000 0.00 0.00 0.00 4.52
1456 1675 9.480861 TGAGATATCTTAACCTATCCCATGTAG 57.519 37.037 6.70 0.00 0.00 2.74
1457 1676 9.482175 GAGATATCTTAACCTATCCCATGTAGT 57.518 37.037 6.70 0.00 0.00 2.73
1462 1681 8.571461 TCTTAACCTATCCCATGTAGTATACG 57.429 38.462 0.00 0.00 46.99 3.06
1467 1686 6.210185 ACCTATCCCATGTAGTATACGTTTCC 59.790 42.308 0.00 0.00 46.99 3.13
1468 1687 6.436532 CCTATCCCATGTAGTATACGTTTCCT 59.563 42.308 0.00 0.00 46.99 3.36
1470 1689 4.276678 TCCCATGTAGTATACGTTTCCTCG 59.723 45.833 0.00 0.00 46.99 4.63
1472 1703 4.037208 CCATGTAGTATACGTTTCCTCGGT 59.963 45.833 0.00 0.00 46.99 4.69
1524 2085 2.687700 AGCTGCACTATCTTGACCTG 57.312 50.000 1.02 0.00 0.00 4.00
1528 2089 3.519579 CTGCACTATCTTGACCTGTCAG 58.480 50.000 0.00 0.00 41.13 3.51
1536 2097 2.762887 TCTTGACCTGTCAGCCTATGAG 59.237 50.000 0.00 0.00 41.13 2.90
1537 2098 0.826715 TGACCTGTCAGCCTATGAGC 59.173 55.000 0.00 0.00 39.07 4.26
1538 2099 0.105778 GACCTGTCAGCCTATGAGCC 59.894 60.000 0.00 0.00 39.07 4.70
1539 2100 0.618680 ACCTGTCAGCCTATGAGCCA 60.619 55.000 0.00 0.00 39.07 4.75
1540 2101 0.763652 CCTGTCAGCCTATGAGCCAT 59.236 55.000 0.00 0.00 39.07 4.40
1542 2103 2.570752 CCTGTCAGCCTATGAGCCATAT 59.429 50.000 0.00 0.00 39.07 1.78
1548 2109 6.183361 TGTCAGCCTATGAGCCATATAAAGTT 60.183 38.462 0.00 0.00 39.07 2.66
1583 2144 4.087510 TCTCATGGTTAACACGTCTACG 57.912 45.455 8.10 0.04 46.33 3.51
1627 2188 1.883732 TCAGTAGACCTGAGCACGC 59.116 57.895 0.00 0.00 45.34 5.34
1635 2196 1.518133 CCTGAGCACGCTAGCTGAC 60.518 63.158 13.93 1.18 46.75 3.51
1662 2223 1.779061 ATGTGGTGAACGCCCTTCCT 61.779 55.000 1.86 0.00 0.00 3.36
1684 2245 5.320277 CTTCTTTGAGGTCCCTTCATCTTT 58.680 41.667 0.00 0.00 0.00 2.52
1685 2246 4.911390 TCTTTGAGGTCCCTTCATCTTTC 58.089 43.478 0.00 0.00 0.00 2.62
1694 2255 2.821969 CCCTTCATCTTTCTGGTTGTGG 59.178 50.000 0.00 0.00 0.00 4.17
1695 2256 2.229784 CCTTCATCTTTCTGGTTGTGGC 59.770 50.000 0.00 0.00 0.00 5.01
1765 2326 1.633774 TGAGGAGCTCGACCTTTCTT 58.366 50.000 7.83 0.00 37.93 2.52
1777 2338 6.677187 GCTCGACCTTTCTTACAACAACTTTT 60.677 38.462 0.00 0.00 0.00 2.27
1780 2341 7.333921 TCGACCTTTCTTACAACAACTTTTACA 59.666 33.333 0.00 0.00 0.00 2.41
1803 2364 0.099791 CGGTTGCGTCTTGTTGGTTT 59.900 50.000 0.00 0.00 0.00 3.27
1824 2385 6.859017 GTTTTGGAACCTAACAAGACTCAAA 58.141 36.000 0.00 0.00 31.33 2.69
1836 2397 6.031751 ACAAGACTCAAACATCTCTACCTC 57.968 41.667 0.00 0.00 0.00 3.85
1840 2401 5.477291 AGACTCAAACATCTCTACCTCGAAA 59.523 40.000 0.00 0.00 0.00 3.46
1911 2475 6.547141 TGGTATCCTTGCAAGAATTATCCTTG 59.453 38.462 28.05 6.84 42.77 3.61
1912 2476 6.772716 GGTATCCTTGCAAGAATTATCCTTGA 59.227 38.462 28.05 12.11 42.57 3.02
1918 2482 6.258230 TGCAAGAATTATCCTTGACACAAG 57.742 37.500 9.03 4.73 42.57 3.16
1922 2489 7.094377 GCAAGAATTATCCTTGACACAAGGTAA 60.094 37.037 23.82 20.51 42.57 2.85
1924 2491 7.458397 AGAATTATCCTTGACACAAGGTAACA 58.542 34.615 23.82 10.19 38.55 2.41
2002 2569 7.839705 TCCTATACCTTGACACTACTTTCTCAT 59.160 37.037 0.00 0.00 0.00 2.90
2017 2584 4.818534 TTCTCATATGGAATCAAAGCGC 57.181 40.909 0.00 0.00 0.00 5.92
2052 2619 3.332761 TGTTCGTCAAACAGATTGCAC 57.667 42.857 0.00 0.00 42.95 4.57
2058 2625 3.183574 CGTCAAACAGATTGCACGAGTTA 59.816 43.478 8.64 0.00 41.16 2.24
2131 2698 2.349886 CGCACCAGCTTAGTCATTCTTC 59.650 50.000 0.00 0.00 39.10 2.87
2136 2703 5.879223 CACCAGCTTAGTCATTCTTCATCTT 59.121 40.000 0.00 0.00 0.00 2.40
2197 2764 5.869649 AGGGCAGTTTACAAATTTGAAGT 57.130 34.783 24.64 9.37 0.00 3.01
2203 2770 7.803659 GGCAGTTTACAAATTTGAAGTCTCTAC 59.196 37.037 24.64 9.97 0.00 2.59
2269 2917 5.186996 TGGCTTTCTCACAAATTTGACTC 57.813 39.130 24.64 4.72 0.00 3.36
2282 2931 7.805071 CACAAATTTGACTCTGTTGGATCTAAC 59.195 37.037 24.64 14.57 0.00 2.34
2284 2933 7.678947 AATTTGACTCTGTTGGATCTAACTG 57.321 36.000 20.91 19.81 0.00 3.16
2356 3035 8.948631 AAAAAGCTTAGAGATCATAATCGTGA 57.051 30.769 0.00 0.00 36.97 4.35
2357 3036 8.948631 AAAAGCTTAGAGATCATAATCGTGAA 57.051 30.769 0.00 0.00 36.97 3.18
2361 3040 8.530311 AGCTTAGAGATCATAATCGTGAATGAT 58.470 33.333 0.00 8.25 43.75 2.45
2367 3046 6.898912 ATCATAATCGTGAATGATCCGATG 57.101 37.500 4.85 0.00 38.19 3.84
2368 3047 6.024552 TCATAATCGTGAATGATCCGATGA 57.975 37.500 4.85 0.00 38.28 2.92
2369 3048 6.633856 TCATAATCGTGAATGATCCGATGAT 58.366 36.000 4.85 1.01 38.28 2.45
2370 3049 7.099120 TCATAATCGTGAATGATCCGATGATT 58.901 34.615 4.85 0.00 38.28 2.57
2371 3050 5.602458 AATCGTGAATGATCCGATGATTG 57.398 39.130 0.00 0.00 38.28 2.67
2372 3051 2.802247 TCGTGAATGATCCGATGATTGC 59.198 45.455 0.00 0.00 0.00 3.56
2373 3052 2.545106 CGTGAATGATCCGATGATTGCA 59.455 45.455 0.00 0.00 0.00 4.08
2374 3053 3.002553 CGTGAATGATCCGATGATTGCAA 59.997 43.478 0.00 0.00 0.00 4.08
2375 3054 4.496175 CGTGAATGATCCGATGATTGCAAA 60.496 41.667 1.71 0.00 0.00 3.68
2376 3055 5.342433 GTGAATGATCCGATGATTGCAAAA 58.658 37.500 1.71 0.00 0.00 2.44
2377 3056 5.457799 GTGAATGATCCGATGATTGCAAAAG 59.542 40.000 1.71 0.00 0.00 2.27
2378 3057 5.357596 TGAATGATCCGATGATTGCAAAAGA 59.642 36.000 1.71 0.00 0.00 2.52
2379 3058 5.840243 ATGATCCGATGATTGCAAAAGAA 57.160 34.783 1.71 0.00 0.00 2.52
2380 3059 4.985413 TGATCCGATGATTGCAAAAGAAC 58.015 39.130 1.71 0.00 0.00 3.01
2381 3060 4.458642 TGATCCGATGATTGCAAAAGAACA 59.541 37.500 1.71 0.00 0.00 3.18
2382 3061 4.424061 TCCGATGATTGCAAAAGAACAG 57.576 40.909 1.71 0.00 0.00 3.16
2383 3062 3.820467 TCCGATGATTGCAAAAGAACAGT 59.180 39.130 1.71 0.00 0.00 3.55
2384 3063 4.278170 TCCGATGATTGCAAAAGAACAGTT 59.722 37.500 1.71 0.00 0.00 3.16
2385 3064 5.471797 TCCGATGATTGCAAAAGAACAGTTA 59.528 36.000 1.71 0.00 0.00 2.24
2386 3065 6.150976 TCCGATGATTGCAAAAGAACAGTTAT 59.849 34.615 1.71 0.00 0.00 1.89
2387 3066 6.470235 CCGATGATTGCAAAAGAACAGTTATC 59.530 38.462 1.71 0.00 0.00 1.75
2388 3067 7.246311 CGATGATTGCAAAAGAACAGTTATCT 58.754 34.615 1.71 0.00 0.00 1.98
2389 3068 8.390354 CGATGATTGCAAAAGAACAGTTATCTA 58.610 33.333 1.71 0.00 0.00 1.98
2390 3069 9.713740 GATGATTGCAAAAGAACAGTTATCTAG 57.286 33.333 1.71 0.00 0.00 2.43
2391 3070 8.621532 TGATTGCAAAAGAACAGTTATCTAGT 57.378 30.769 1.71 0.00 0.00 2.57
2392 3071 9.719355 TGATTGCAAAAGAACAGTTATCTAGTA 57.281 29.630 1.71 0.00 0.00 1.82
2555 3234 6.604735 ATCAAGCACAGGAATAAACGATAC 57.395 37.500 0.00 0.00 0.00 2.24
2665 3344 3.134574 TGGGTAACATGTCACTGGAAC 57.865 47.619 0.00 0.00 39.74 3.62
2673 3352 7.491696 GGTAACATGTCACTGGAACTTCTATAC 59.508 40.741 0.00 0.00 0.00 1.47
2698 3377 8.522830 ACTTTGGTTCAAACAATATATCTGGTG 58.477 33.333 0.00 0.00 0.00 4.17
2763 3442 4.631813 CCAAGAAACTCTTTATCAGGACCG 59.368 45.833 0.00 0.00 33.78 4.79
2783 3462 1.003464 GCTGCCATCAAATTTTGGGGT 59.997 47.619 16.75 1.51 33.40 4.95
2789 3468 3.307621 CCATCAAATTTTGGGGTTCCAGG 60.308 47.826 9.18 0.00 45.04 4.45
2852 3531 5.003160 TCAAATTCCAGTGTCTGTATGTGG 58.997 41.667 0.00 0.00 0.00 4.17
2873 3552 6.012858 TGTGGATTGAACTTATACTCCTTGGT 60.013 38.462 0.00 0.00 0.00 3.67
2902 3581 5.010012 GCCAACAATCTTCTTGAAGGAGAAA 59.990 40.000 7.37 0.00 35.38 2.52
2942 3621 5.679734 ACAAGTGACATGTCAATTCTGTC 57.320 39.130 32.32 17.98 44.73 3.51
2943 3622 5.125356 ACAAGTGACATGTCAATTCTGTCA 58.875 37.500 32.32 7.22 44.73 3.58
3024 3703 5.637387 GCTATCTTACTTAGATCTGGCAAGC 59.363 44.000 5.18 0.00 42.69 4.01
3079 3758 2.552373 GGGAACTTGTGGGAACTACAGG 60.552 54.545 0.00 0.00 0.00 4.00
3135 3814 7.761249 GGGCATATTCCAAATAATATCACAAGC 59.239 37.037 0.00 0.00 31.17 4.01
3184 3863 3.958798 GGCGGCTAATAGGATATCAGGTA 59.041 47.826 0.00 0.00 0.00 3.08
3230 3909 5.804639 TCTAACAGCTATGACAACACCATT 58.195 37.500 0.00 0.00 0.00 3.16
3249 3928 0.613572 TCGTACTGGATCCTGGCACA 60.614 55.000 21.40 8.08 0.00 4.57
3256 3935 3.202818 ACTGGATCCTGGCACAATCATTA 59.797 43.478 21.40 0.00 38.70 1.90
3266 3945 5.495640 TGGCACAATCATTAAATTTTCCCC 58.504 37.500 0.00 0.00 31.92 4.81
3268 3947 5.353956 GGCACAATCATTAAATTTTCCCCAC 59.646 40.000 0.00 0.00 0.00 4.61
3408 5151 5.245301 TCCAGAGGAAATAACGTCTCTTGAA 59.755 40.000 0.00 0.00 34.71 2.69
3421 5164 8.567285 AACGTCTCTTGAAGGATTGATAAATT 57.433 30.769 0.00 0.00 0.00 1.82
3480 5223 1.549203 ACAAGATTGGGGACATGCAC 58.451 50.000 0.00 0.00 42.32 4.57
3492 5235 1.129251 GACATGCACACATTGGAGTCG 59.871 52.381 0.00 0.00 32.87 4.18
3537 5280 2.257207 TCAGGAGAAATCCCGTCAAGT 58.743 47.619 0.00 0.00 0.00 3.16
3538 5281 2.028112 TCAGGAGAAATCCCGTCAAGTG 60.028 50.000 0.00 0.00 0.00 3.16
3567 5310 8.248253 TCAAATCTAACGTACTTGAGCATTCTA 58.752 33.333 0.00 0.00 0.00 2.10
3573 5316 4.096682 ACGTACTTGAGCATTCTAGACCTC 59.903 45.833 0.00 0.00 31.68 3.85
3610 5353 3.782523 AGCAGGAAGAATACCATCAGGAA 59.217 43.478 0.00 0.00 38.69 3.36
3653 5396 1.407437 GGAGAACCCAGCCATGTACAG 60.407 57.143 0.33 0.00 34.14 2.74
3707 5450 7.327761 CCTTCATAAAAATTGCTCAGTCAACAG 59.672 37.037 0.00 0.00 0.00 3.16
3717 5460 2.412870 TCAGTCAACAGTAATGCACCG 58.587 47.619 0.00 0.00 0.00 4.94
3718 5461 1.464608 CAGTCAACAGTAATGCACCGG 59.535 52.381 0.00 0.00 0.00 5.28
3736 5479 2.419990 CCGGAGCATTACCATCAACAGA 60.420 50.000 0.00 0.00 0.00 3.41
3748 5494 5.059833 ACCATCAACAGAGAAGTGAAGAAC 58.940 41.667 0.00 0.00 0.00 3.01
3770 5516 4.508124 ACTTTCAGAGTCGATGTTGTTCAC 59.492 41.667 0.00 0.00 31.20 3.18
3807 5553 2.524148 GGGTTTGTGGCTGGCCTT 60.524 61.111 13.05 0.00 36.94 4.35
3816 5562 2.140138 GGCTGGCCTTTGGGTTGTT 61.140 57.895 3.32 0.00 34.45 2.83
3820 5566 1.484240 CTGGCCTTTGGGTTGTTTTCA 59.516 47.619 3.32 0.00 34.45 2.69
3927 5673 1.133809 TCACTTGGGGCAGGTTAGCT 61.134 55.000 0.00 0.00 34.17 3.32
4149 5927 0.677731 CCATGATGAACCCAGCGTGT 60.678 55.000 0.00 0.00 42.46 4.49
4159 5937 1.003580 ACCCAGCGTGTTGATGAATCT 59.996 47.619 0.00 0.00 35.47 2.40
4203 5981 3.507622 TGATGATATAGAGTGGGCAGACG 59.492 47.826 0.00 0.00 0.00 4.18
4237 6015 3.040147 TGTTCACTCTCAATTCGTCCC 57.960 47.619 0.00 0.00 0.00 4.46
4264 6042 6.062095 CCCTATATTTGGTCTTGGTTGTAGG 58.938 44.000 0.00 0.00 0.00 3.18
4287 6065 7.722795 GGCAACTGGTTTTTAATATTGTTGT 57.277 32.000 0.00 0.00 36.78 3.32
4288 6066 8.148807 GGCAACTGGTTTTTAATATTGTTGTT 57.851 30.769 0.00 0.00 36.78 2.83
4289 6067 8.279800 GGCAACTGGTTTTTAATATTGTTGTTC 58.720 33.333 0.00 0.00 36.78 3.18
4290 6068 8.821894 GCAACTGGTTTTTAATATTGTTGTTCA 58.178 29.630 0.00 0.00 36.78 3.18
4299 6078 9.703892 TTTTAATATTGTTGTTCACTGGGATTG 57.296 29.630 0.00 0.00 0.00 2.67
4403 6183 1.134580 CGACAGGAGAGATGCCATTGT 60.135 52.381 0.00 0.00 0.00 2.71
4404 6184 2.286872 GACAGGAGAGATGCCATTGTG 58.713 52.381 0.00 0.00 0.00 3.33
4690 6474 8.490311 TCCACAATTTTAGAAAAAGGGTTCAAT 58.510 29.630 0.00 0.00 0.00 2.57
4847 6634 0.805711 TACATGCTCACGGATGCACG 60.806 55.000 0.00 0.00 42.11 5.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 1.007038 GGTCGCCACGTTACAGACA 60.007 57.895 10.87 0.00 33.84 3.41
154 155 1.002430 ACGGCAAAGAAGAGCAGATCA 59.998 47.619 0.00 0.00 0.00 2.92
406 410 0.608640 CATATCTACCACCTCCGCCC 59.391 60.000 0.00 0.00 0.00 6.13
422 426 2.242926 CCTTCCTCCATCGAGAGCATA 58.757 52.381 0.00 0.00 38.52 3.14
502 506 0.739813 CCGAGCAAAGGGTTCTACGG 60.740 60.000 0.00 0.00 0.00 4.02
581 585 6.288294 CCAAATATCCTTCTGTAACCGATCA 58.712 40.000 0.00 0.00 0.00 2.92
603 608 5.785423 TCTTCTTCTATTTCAACCTCTCCCA 59.215 40.000 0.00 0.00 0.00 4.37
683 689 2.208431 GCATCGAGGAGGAATCTGTTG 58.792 52.381 0.00 0.00 0.00 3.33
689 695 0.602106 CGCATGCATCGAGGAGGAAT 60.602 55.000 19.57 0.00 0.00 3.01
690 696 1.227350 CGCATGCATCGAGGAGGAA 60.227 57.895 19.57 0.00 0.00 3.36
691 697 1.960040 AACGCATGCATCGAGGAGGA 61.960 55.000 19.57 0.00 0.00 3.71
692 698 1.493950 GAACGCATGCATCGAGGAGG 61.494 60.000 19.57 0.00 0.00 4.30
693 699 1.493950 GGAACGCATGCATCGAGGAG 61.494 60.000 19.57 0.50 0.00 3.69
694 700 1.521457 GGAACGCATGCATCGAGGA 60.521 57.895 19.57 0.00 0.00 3.71
695 701 2.537560 GGGAACGCATGCATCGAGG 61.538 63.158 19.57 2.13 0.00 4.63
696 702 1.091771 AAGGGAACGCATGCATCGAG 61.092 55.000 19.57 2.94 0.00 4.04
697 703 0.676466 AAAGGGAACGCATGCATCGA 60.676 50.000 19.57 0.00 0.00 3.59
698 704 0.523968 CAAAGGGAACGCATGCATCG 60.524 55.000 19.57 14.34 0.00 3.84
699 705 0.810648 TCAAAGGGAACGCATGCATC 59.189 50.000 19.57 14.82 0.00 3.91
700 706 1.203052 CTTCAAAGGGAACGCATGCAT 59.797 47.619 19.57 5.46 0.00 3.96
701 707 0.597568 CTTCAAAGGGAACGCATGCA 59.402 50.000 19.57 0.00 0.00 3.96
702 708 0.733909 GCTTCAAAGGGAACGCATGC 60.734 55.000 7.91 7.91 32.99 4.06
703 709 0.597568 TGCTTCAAAGGGAACGCATG 59.402 50.000 0.00 0.00 35.88 4.06
704 710 1.203052 CATGCTTCAAAGGGAACGCAT 59.797 47.619 0.00 0.00 44.14 4.73
705 711 0.597568 CATGCTTCAAAGGGAACGCA 59.402 50.000 0.00 0.00 40.96 5.24
706 712 0.733909 GCATGCTTCAAAGGGAACGC 60.734 55.000 11.37 0.00 33.21 4.84
707 713 0.597568 TGCATGCTTCAAAGGGAACG 59.402 50.000 20.33 0.00 0.00 3.95
708 714 1.067354 CCTGCATGCTTCAAAGGGAAC 60.067 52.381 20.33 0.00 0.00 3.62
709 715 1.259609 CCTGCATGCTTCAAAGGGAA 58.740 50.000 20.33 0.00 0.00 3.97
710 716 1.252904 GCCTGCATGCTTCAAAGGGA 61.253 55.000 20.33 0.00 0.00 4.20
711 717 1.217244 GCCTGCATGCTTCAAAGGG 59.783 57.895 20.33 10.08 0.00 3.95
712 718 0.172803 GAGCCTGCATGCTTCAAAGG 59.827 55.000 20.33 17.35 42.95 3.11
713 719 0.885879 TGAGCCTGCATGCTTCAAAG 59.114 50.000 20.33 7.14 42.95 2.77
714 720 1.475280 GATGAGCCTGCATGCTTCAAA 59.525 47.619 20.33 5.18 42.95 2.69
715 721 1.100510 GATGAGCCTGCATGCTTCAA 58.899 50.000 20.33 7.57 42.95 2.69
716 722 0.750546 GGATGAGCCTGCATGCTTCA 60.751 55.000 20.33 16.01 42.95 3.02
717 723 0.750546 TGGATGAGCCTGCATGCTTC 60.751 55.000 20.33 11.93 42.95 3.86
718 724 0.106167 ATGGATGAGCCTGCATGCTT 60.106 50.000 20.33 2.70 42.95 3.91
719 725 0.537600 GATGGATGAGCCTGCATGCT 60.538 55.000 16.93 16.93 46.37 3.79
720 726 1.524863 GGATGGATGAGCCTGCATGC 61.525 60.000 11.82 11.82 37.16 4.06
721 727 0.179001 TGGATGGATGAGCCTGCATG 60.179 55.000 0.00 0.00 37.63 4.06
722 728 0.110678 CTGGATGGATGAGCCTGCAT 59.889 55.000 0.00 0.00 37.63 3.96
723 729 1.276859 ACTGGATGGATGAGCCTGCA 61.277 55.000 0.00 0.00 37.63 4.41
724 730 0.534652 GACTGGATGGATGAGCCTGC 60.535 60.000 0.00 0.00 37.63 4.85
725 731 0.249784 CGACTGGATGGATGAGCCTG 60.250 60.000 0.00 0.00 37.63 4.85
726 732 0.397675 TCGACTGGATGGATGAGCCT 60.398 55.000 0.00 0.00 37.63 4.58
727 733 0.249657 GTCGACTGGATGGATGAGCC 60.250 60.000 8.70 0.00 37.10 4.70
728 734 0.596083 CGTCGACTGGATGGATGAGC 60.596 60.000 14.70 0.00 0.00 4.26
729 735 0.596083 GCGTCGACTGGATGGATGAG 60.596 60.000 14.70 0.00 31.98 2.90
730 736 1.437573 GCGTCGACTGGATGGATGA 59.562 57.895 14.70 0.00 31.98 2.92
731 737 1.946156 CGCGTCGACTGGATGGATG 60.946 63.158 14.70 0.00 31.98 3.51
732 738 2.413351 CGCGTCGACTGGATGGAT 59.587 61.111 14.70 0.00 31.98 3.41
733 739 3.060000 ACGCGTCGACTGGATGGA 61.060 61.111 14.70 0.00 31.98 3.41
734 740 2.880879 CACGCGTCGACTGGATGG 60.881 66.667 9.86 0.00 31.98 3.51
735 741 3.545481 GCACGCGTCGACTGGATG 61.545 66.667 9.86 7.70 34.62 3.51
736 742 4.050934 TGCACGCGTCGACTGGAT 62.051 61.111 9.86 0.00 0.00 3.41
737 743 4.994201 GTGCACGCGTCGACTGGA 62.994 66.667 9.86 3.50 0.00 3.86
739 745 3.059472 GATGTGCACGCGTCGACTG 62.059 63.158 9.86 8.55 0.00 3.51
740 746 2.805353 GATGTGCACGCGTCGACT 60.805 61.111 9.86 0.00 0.00 4.18
741 747 3.838795 GGATGTGCACGCGTCGAC 61.839 66.667 9.86 9.76 0.00 4.20
747 753 2.709125 TATAGCCCGGATGTGCACGC 62.709 60.000 13.13 8.23 0.00 5.34
748 754 0.037326 ATATAGCCCGGATGTGCACG 60.037 55.000 13.13 0.00 0.00 5.34
749 755 1.001974 TCATATAGCCCGGATGTGCAC 59.998 52.381 10.75 10.75 0.00 4.57
750 756 1.347062 TCATATAGCCCGGATGTGCA 58.653 50.000 0.73 0.00 0.00 4.57
751 757 2.028112 TCTTCATATAGCCCGGATGTGC 60.028 50.000 0.73 0.00 0.00 4.57
752 758 3.259374 ACTCTTCATATAGCCCGGATGTG 59.741 47.826 0.73 0.00 0.00 3.21
753 759 3.511477 ACTCTTCATATAGCCCGGATGT 58.489 45.455 0.73 0.00 0.00 3.06
754 760 4.950475 TCTACTCTTCATATAGCCCGGATG 59.050 45.833 0.73 0.00 0.00 3.51
755 761 4.951094 GTCTACTCTTCATATAGCCCGGAT 59.049 45.833 0.73 0.00 0.00 4.18
756 762 4.043059 AGTCTACTCTTCATATAGCCCGGA 59.957 45.833 0.73 0.00 0.00 5.14
757 763 4.337145 AGTCTACTCTTCATATAGCCCGG 58.663 47.826 0.00 0.00 0.00 5.73
758 764 6.092944 CAGTAGTCTACTCTTCATATAGCCCG 59.907 46.154 9.70 0.00 36.76 6.13
759 765 6.943718 ACAGTAGTCTACTCTTCATATAGCCC 59.056 42.308 9.70 0.00 36.76 5.19
760 766 7.989416 ACAGTAGTCTACTCTTCATATAGCC 57.011 40.000 9.70 0.00 36.76 3.93
761 767 8.662141 GCTACAGTAGTCTACTCTTCATATAGC 58.338 40.741 9.70 10.12 36.76 2.97
762 768 9.713713 TGCTACAGTAGTCTACTCTTCATATAG 57.286 37.037 9.70 5.15 36.76 1.31
765 771 9.491675 GTATGCTACAGTAGTCTACTCTTCATA 57.508 37.037 9.70 11.40 36.76 2.15
766 772 8.215050 AGTATGCTACAGTAGTCTACTCTTCAT 58.785 37.037 9.70 12.21 36.76 2.57
767 773 7.566569 AGTATGCTACAGTAGTCTACTCTTCA 58.433 38.462 9.70 6.43 36.76 3.02
768 774 8.339714 CAAGTATGCTACAGTAGTCTACTCTTC 58.660 40.741 9.70 1.24 36.76 2.87
769 775 8.047911 TCAAGTATGCTACAGTAGTCTACTCTT 58.952 37.037 9.70 5.26 36.76 2.85
770 776 7.566569 TCAAGTATGCTACAGTAGTCTACTCT 58.433 38.462 9.70 1.20 36.76 3.24
771 777 7.789273 TCAAGTATGCTACAGTAGTCTACTC 57.211 40.000 9.70 0.00 36.76 2.59
772 778 8.215050 AGATCAAGTATGCTACAGTAGTCTACT 58.785 37.037 6.71 6.71 40.28 2.57
773 779 8.286800 CAGATCAAGTATGCTACAGTAGTCTAC 58.713 40.741 9.42 10.46 0.00 2.59
774 780 7.041030 GCAGATCAAGTATGCTACAGTAGTCTA 60.041 40.741 9.42 0.00 41.77 2.59
775 781 6.238897 GCAGATCAAGTATGCTACAGTAGTCT 60.239 42.308 9.42 0.00 41.77 3.24
776 782 5.918011 GCAGATCAAGTATGCTACAGTAGTC 59.082 44.000 9.42 2.71 41.77 2.59
777 783 5.837437 GCAGATCAAGTATGCTACAGTAGT 58.163 41.667 9.42 0.00 41.77 2.73
786 792 3.302740 GCGTTGTAGCAGATCAAGTATGC 60.303 47.826 0.00 0.00 45.32 3.14
787 793 3.246226 GGCGTTGTAGCAGATCAAGTATG 59.754 47.826 0.00 0.00 39.27 2.39
788 794 3.458189 GGCGTTGTAGCAGATCAAGTAT 58.542 45.455 0.00 0.00 39.27 2.12
789 795 2.418197 GGGCGTTGTAGCAGATCAAGTA 60.418 50.000 0.00 0.00 39.27 2.24
790 796 1.676014 GGGCGTTGTAGCAGATCAAGT 60.676 52.381 0.00 0.00 39.27 3.16
791 797 1.009829 GGGCGTTGTAGCAGATCAAG 58.990 55.000 0.00 0.00 39.27 3.02
792 798 0.613260 AGGGCGTTGTAGCAGATCAA 59.387 50.000 0.00 0.00 39.27 2.57
793 799 0.175760 GAGGGCGTTGTAGCAGATCA 59.824 55.000 0.00 0.00 39.27 2.92
794 800 0.175760 TGAGGGCGTTGTAGCAGATC 59.824 55.000 0.00 0.00 39.27 2.75
795 801 0.833287 ATGAGGGCGTTGTAGCAGAT 59.167 50.000 0.00 0.00 39.27 2.90
796 802 0.108186 CATGAGGGCGTTGTAGCAGA 60.108 55.000 0.00 0.00 39.27 4.26
797 803 1.709147 GCATGAGGGCGTTGTAGCAG 61.709 60.000 0.00 0.00 39.27 4.24
798 804 1.745115 GCATGAGGGCGTTGTAGCA 60.745 57.895 0.00 0.00 39.27 3.49
799 805 1.432270 GAGCATGAGGGCGTTGTAGC 61.432 60.000 0.00 0.00 39.27 3.58
800 806 0.108186 TGAGCATGAGGGCGTTGTAG 60.108 55.000 0.00 0.00 39.27 2.74
801 807 0.108186 CTGAGCATGAGGGCGTTGTA 60.108 55.000 0.00 0.00 39.27 2.41
802 808 1.376424 CTGAGCATGAGGGCGTTGT 60.376 57.895 0.00 0.00 39.27 3.32
803 809 2.110967 CCTGAGCATGAGGGCGTTG 61.111 63.158 0.00 0.00 34.98 4.10
804 810 2.270205 CCTGAGCATGAGGGCGTT 59.730 61.111 0.00 0.00 34.98 4.84
820 826 4.082523 TAGACAGCGCCAGTGCCC 62.083 66.667 2.29 0.00 34.65 5.36
821 827 2.815647 GTAGACAGCGCCAGTGCC 60.816 66.667 2.29 0.00 34.65 5.01
822 828 2.815647 GGTAGACAGCGCCAGTGC 60.816 66.667 2.29 0.00 0.00 4.40
823 829 1.446792 CAGGTAGACAGCGCCAGTG 60.447 63.158 2.29 0.00 0.00 3.66
824 830 2.650116 CCAGGTAGACAGCGCCAGT 61.650 63.158 2.29 2.35 0.00 4.00
825 831 2.185350 CCAGGTAGACAGCGCCAG 59.815 66.667 2.29 0.00 0.00 4.85
826 832 3.390521 CCCAGGTAGACAGCGCCA 61.391 66.667 2.29 0.00 0.00 5.69
827 833 4.840005 GCCCAGGTAGACAGCGCC 62.840 72.222 2.29 0.00 0.00 6.53
830 836 2.125512 CACGCCCAGGTAGACAGC 60.126 66.667 0.00 0.00 0.00 4.40
831 837 2.579201 CCACGCCCAGGTAGACAG 59.421 66.667 0.00 0.00 0.00 3.51
832 838 3.702048 GCCACGCCCAGGTAGACA 61.702 66.667 0.00 0.00 0.00 3.41
833 839 3.031417 ATGCCACGCCCAGGTAGAC 62.031 63.158 0.00 0.00 0.00 2.59
834 840 2.687200 ATGCCACGCCCAGGTAGA 60.687 61.111 0.00 0.00 0.00 2.59
835 841 2.514592 CATGCCACGCCCAGGTAG 60.515 66.667 0.00 0.00 0.00 3.18
836 842 2.901281 AACATGCCACGCCCAGGTA 61.901 57.895 0.00 0.00 0.00 3.08
837 843 4.284550 AACATGCCACGCCCAGGT 62.285 61.111 0.00 0.00 0.00 4.00
838 844 3.751246 CAACATGCCACGCCCAGG 61.751 66.667 0.00 0.00 0.00 4.45
839 845 3.751246 CCAACATGCCACGCCCAG 61.751 66.667 0.00 0.00 0.00 4.45
848 854 2.339712 GTGTGGTGGCCAACATGC 59.660 61.111 29.68 18.99 34.18 4.06
849 855 1.363443 GTGTGTGGTGGCCAACATG 59.637 57.895 29.68 0.00 34.18 3.21
850 856 1.832167 GGTGTGTGGTGGCCAACAT 60.832 57.895 29.68 0.00 34.18 2.71
851 857 2.441164 GGTGTGTGGTGGCCAACA 60.441 61.111 22.71 22.71 34.18 3.33
852 858 3.591835 CGGTGTGTGGTGGCCAAC 61.592 66.667 15.99 15.99 34.18 3.77
856 862 4.626081 AGAGCGGTGTGTGGTGGC 62.626 66.667 0.00 0.00 0.00 5.01
857 863 2.111043 AAGAGCGGTGTGTGGTGG 59.889 61.111 0.00 0.00 0.00 4.61
858 864 2.896801 GCAAGAGCGGTGTGTGGTG 61.897 63.158 0.00 0.00 0.00 4.17
859 865 2.591715 GCAAGAGCGGTGTGTGGT 60.592 61.111 0.00 0.00 0.00 4.16
860 866 3.357079 GGCAAGAGCGGTGTGTGG 61.357 66.667 0.00 0.00 43.41 4.17
861 867 2.281070 AGGCAAGAGCGGTGTGTG 60.281 61.111 0.00 0.00 43.41 3.82
862 868 2.031163 GAGGCAAGAGCGGTGTGT 59.969 61.111 0.00 0.00 43.41 3.72
863 869 2.743928 GGAGGCAAGAGCGGTGTG 60.744 66.667 0.00 0.00 43.41 3.82
864 870 2.925170 AGGAGGCAAGAGCGGTGT 60.925 61.111 0.00 0.00 43.41 4.16
865 871 2.435586 CAGGAGGCAAGAGCGGTG 60.436 66.667 0.00 0.00 43.41 4.94
866 872 4.400961 GCAGGAGGCAAGAGCGGT 62.401 66.667 0.00 0.00 43.97 5.68
875 881 1.432270 GCGACAGTAATGCAGGAGGC 61.432 60.000 0.00 0.00 45.13 4.70
876 882 0.811616 GGCGACAGTAATGCAGGAGG 60.812 60.000 0.00 0.00 0.00 4.30
877 883 1.148157 CGGCGACAGTAATGCAGGAG 61.148 60.000 0.00 0.00 0.00 3.69
878 884 1.153647 CGGCGACAGTAATGCAGGA 60.154 57.895 0.00 0.00 0.00 3.86
879 885 1.447838 ACGGCGACAGTAATGCAGG 60.448 57.895 16.62 0.00 0.00 4.85
880 886 1.014044 ACACGGCGACAGTAATGCAG 61.014 55.000 16.62 0.00 0.00 4.41
881 887 1.005512 ACACGGCGACAGTAATGCA 60.006 52.632 16.62 0.00 0.00 3.96
882 888 0.736325 AGACACGGCGACAGTAATGC 60.736 55.000 16.62 0.00 0.00 3.56
883 889 1.390123 CAAGACACGGCGACAGTAATG 59.610 52.381 16.62 0.95 0.00 1.90
884 890 1.710013 CAAGACACGGCGACAGTAAT 58.290 50.000 16.62 0.00 0.00 1.89
885 891 0.942410 GCAAGACACGGCGACAGTAA 60.942 55.000 16.62 0.00 0.00 2.24
886 892 1.372499 GCAAGACACGGCGACAGTA 60.372 57.895 16.62 0.00 0.00 2.74
887 893 2.661866 GCAAGACACGGCGACAGT 60.662 61.111 16.62 9.22 0.00 3.55
888 894 3.414700 GGCAAGACACGGCGACAG 61.415 66.667 16.62 5.45 0.00 3.51
894 900 2.126071 ATCGACGGCAAGACACGG 60.126 61.111 0.00 0.00 0.00 4.94
895 901 1.443702 TGATCGACGGCAAGACACG 60.444 57.895 0.00 0.00 0.00 4.49
896 902 0.388649 AGTGATCGACGGCAAGACAC 60.389 55.000 0.00 0.00 0.00 3.67
897 903 0.317160 AAGTGATCGACGGCAAGACA 59.683 50.000 0.00 0.00 0.00 3.41
898 904 0.992802 GAAGTGATCGACGGCAAGAC 59.007 55.000 0.00 0.00 0.00 3.01
899 905 0.601057 TGAAGTGATCGACGGCAAGA 59.399 50.000 0.00 0.00 0.00 3.02
900 906 1.590238 GATGAAGTGATCGACGGCAAG 59.410 52.381 0.00 0.00 0.00 4.01
901 907 1.067213 TGATGAAGTGATCGACGGCAA 60.067 47.619 0.00 0.00 0.00 4.52
902 908 0.530288 TGATGAAGTGATCGACGGCA 59.470 50.000 0.00 0.00 0.00 5.69
903 909 1.789464 GATGATGAAGTGATCGACGGC 59.211 52.381 0.00 0.00 0.00 5.68
904 910 3.048501 CTGATGATGAAGTGATCGACGG 58.951 50.000 0.00 0.00 0.00 4.79
905 911 3.485013 CACTGATGATGAAGTGATCGACG 59.515 47.826 0.00 0.00 45.43 5.12
906 912 4.676546 TCACTGATGATGAAGTGATCGAC 58.323 43.478 1.50 0.00 45.97 4.20
907 913 4.989279 TCACTGATGATGAAGTGATCGA 57.011 40.909 1.50 0.00 45.97 3.59
912 918 2.676839 GCCACTCACTGATGATGAAGTG 59.323 50.000 0.00 0.00 44.23 3.16
913 919 2.570752 AGCCACTCACTGATGATGAAGT 59.429 45.455 0.00 0.00 33.22 3.01
914 920 2.937149 CAGCCACTCACTGATGATGAAG 59.063 50.000 0.00 0.00 37.32 3.02
915 921 2.568509 TCAGCCACTCACTGATGATGAA 59.431 45.455 0.00 0.00 39.21 2.57
916 922 2.167900 CTCAGCCACTCACTGATGATGA 59.832 50.000 0.00 0.00 42.99 2.92
917 923 2.552031 CTCAGCCACTCACTGATGATG 58.448 52.381 0.00 0.00 42.99 3.07
918 924 1.134461 GCTCAGCCACTCACTGATGAT 60.134 52.381 0.00 0.00 42.99 2.45
919 925 0.248565 GCTCAGCCACTCACTGATGA 59.751 55.000 0.00 0.00 42.99 2.92
920 926 2.764944 GCTCAGCCACTCACTGATG 58.235 57.895 0.00 0.00 42.99 3.07
932 938 1.129437 GAGTCATCGTTTTGGCTCAGC 59.871 52.381 10.86 0.00 45.60 4.26
935 941 0.721718 CGGAGTCATCGTTTTGGCTC 59.278 55.000 8.27 8.27 45.57 4.70
936 942 0.673644 CCGGAGTCATCGTTTTGGCT 60.674 55.000 0.00 0.00 33.30 4.75
937 943 1.644786 CCCGGAGTCATCGTTTTGGC 61.645 60.000 0.73 0.00 0.00 4.52
938 944 1.644786 GCCCGGAGTCATCGTTTTGG 61.645 60.000 0.73 0.00 0.00 3.28
939 945 1.644786 GGCCCGGAGTCATCGTTTTG 61.645 60.000 0.73 0.00 0.00 2.44
940 946 1.376812 GGCCCGGAGTCATCGTTTT 60.377 57.895 0.73 0.00 0.00 2.43
941 947 2.267961 GGCCCGGAGTCATCGTTT 59.732 61.111 0.73 0.00 0.00 3.60
942 948 4.143333 CGGCCCGGAGTCATCGTT 62.143 66.667 0.73 0.00 0.00 3.85
944 950 4.873129 CACGGCCCGGAGTCATCG 62.873 72.222 8.57 0.00 0.00 3.84
945 951 4.530857 CCACGGCCCGGAGTCATC 62.531 72.222 8.57 0.00 0.00 2.92
957 963 1.660560 ATTAGTCGGTCGGTCCACGG 61.661 60.000 0.00 0.00 44.45 4.94
958 964 0.171903 AATTAGTCGGTCGGTCCACG 59.828 55.000 0.00 0.00 46.11 4.94
959 965 3.722728 ATAATTAGTCGGTCGGTCCAC 57.277 47.619 0.00 0.00 35.57 4.02
960 966 7.523293 TTATTATAATTAGTCGGTCGGTCCA 57.477 36.000 2.68 0.00 35.57 4.02
961 967 8.992835 ATTTATTATAATTAGTCGGTCGGTCC 57.007 34.615 2.68 0.00 0.00 4.46
980 986 9.014297 GGCACATATAGCTCCAGTTTATTTATT 57.986 33.333 0.00 0.00 0.00 1.40
981 987 7.334421 CGGCACATATAGCTCCAGTTTATTTAT 59.666 37.037 0.00 0.00 0.00 1.40
982 988 6.649141 CGGCACATATAGCTCCAGTTTATTTA 59.351 38.462 0.00 0.00 0.00 1.40
983 989 5.470098 CGGCACATATAGCTCCAGTTTATTT 59.530 40.000 0.00 0.00 0.00 1.40
984 990 4.997395 CGGCACATATAGCTCCAGTTTATT 59.003 41.667 0.00 0.00 0.00 1.40
985 991 4.040461 ACGGCACATATAGCTCCAGTTTAT 59.960 41.667 0.00 0.00 0.00 1.40
986 992 3.386726 ACGGCACATATAGCTCCAGTTTA 59.613 43.478 0.00 0.00 0.00 2.01
987 993 2.170607 ACGGCACATATAGCTCCAGTTT 59.829 45.455 0.00 0.00 0.00 2.66
988 994 1.762957 ACGGCACATATAGCTCCAGTT 59.237 47.619 0.00 0.00 0.00 3.16
989 995 1.069204 CACGGCACATATAGCTCCAGT 59.931 52.381 0.00 0.00 0.00 4.00
990 996 1.788258 CACGGCACATATAGCTCCAG 58.212 55.000 0.00 0.00 0.00 3.86
991 997 0.249868 GCACGGCACATATAGCTCCA 60.250 55.000 0.00 0.00 0.00 3.86
992 998 1.284982 CGCACGGCACATATAGCTCC 61.285 60.000 0.00 0.00 0.00 4.70
993 999 1.284982 CCGCACGGCACATATAGCTC 61.285 60.000 0.00 0.00 0.00 4.09
994 1000 1.300931 CCGCACGGCACATATAGCT 60.301 57.895 0.00 0.00 0.00 3.32
995 1001 1.284982 CTCCGCACGGCACATATAGC 61.285 60.000 3.66 0.00 34.68 2.97
996 1002 0.032130 ACTCCGCACGGCACATATAG 59.968 55.000 3.66 0.00 34.68 1.31
997 1003 0.249280 CACTCCGCACGGCACATATA 60.249 55.000 3.66 0.00 34.68 0.86
998 1004 1.521457 CACTCCGCACGGCACATAT 60.521 57.895 3.66 0.00 34.68 1.78
999 1005 2.125713 CACTCCGCACGGCACATA 60.126 61.111 3.66 0.00 34.68 2.29
1014 1020 1.337821 GTAGACAGTAGTGTGCGCAC 58.662 55.000 33.11 33.11 45.57 5.34
1015 1021 0.242825 GGTAGACAGTAGTGTGCGCA 59.757 55.000 5.66 5.66 36.88 6.09
1016 1022 0.458025 GGGTAGACAGTAGTGTGCGC 60.458 60.000 8.23 0.00 36.88 6.09
1017 1023 0.885879 TGGGTAGACAGTAGTGTGCG 59.114 55.000 8.23 0.00 36.88 5.34
1018 1024 1.616865 TGTGGGTAGACAGTAGTGTGC 59.383 52.381 8.23 0.10 36.88 4.57
1019 1025 4.021456 TGATTGTGGGTAGACAGTAGTGTG 60.021 45.833 8.23 0.00 36.88 3.82
1020 1026 4.021368 GTGATTGTGGGTAGACAGTAGTGT 60.021 45.833 1.90 1.90 40.71 3.55
1021 1027 4.495422 GTGATTGTGGGTAGACAGTAGTG 58.505 47.826 0.00 0.00 0.00 2.74
1022 1028 3.514309 GGTGATTGTGGGTAGACAGTAGT 59.486 47.826 0.00 0.00 0.00 2.73
1023 1029 3.513912 TGGTGATTGTGGGTAGACAGTAG 59.486 47.826 0.00 0.00 0.00 2.57
1024 1030 3.512496 TGGTGATTGTGGGTAGACAGTA 58.488 45.455 0.00 0.00 0.00 2.74
1025 1031 2.334977 TGGTGATTGTGGGTAGACAGT 58.665 47.619 0.00 0.00 0.00 3.55
1026 1032 3.273434 CATGGTGATTGTGGGTAGACAG 58.727 50.000 0.00 0.00 0.00 3.51
1027 1033 2.617788 GCATGGTGATTGTGGGTAGACA 60.618 50.000 0.00 0.00 0.00 3.41
1028 1034 2.017049 GCATGGTGATTGTGGGTAGAC 58.983 52.381 0.00 0.00 0.00 2.59
1029 1035 1.632920 TGCATGGTGATTGTGGGTAGA 59.367 47.619 0.00 0.00 0.00 2.59
1030 1036 2.127271 TGCATGGTGATTGTGGGTAG 57.873 50.000 0.00 0.00 0.00 3.18
1031 1037 2.653726 GATGCATGGTGATTGTGGGTA 58.346 47.619 2.46 0.00 0.00 3.69
1032 1038 1.477553 GATGCATGGTGATTGTGGGT 58.522 50.000 2.46 0.00 0.00 4.51
1081 1087 0.036765 AGCAATAAGGTGCCGACGAA 60.037 50.000 0.00 0.00 46.14 3.85
1082 1088 0.459585 GAGCAATAAGGTGCCGACGA 60.460 55.000 0.00 0.00 46.14 4.20
1088 1094 2.709475 CGGCGAGCAATAAGGTGC 59.291 61.111 0.00 0.00 45.28 5.01
1227 1254 3.108289 CACTGGCAGCAGTCGACG 61.108 66.667 15.89 6.47 32.26 5.12
1228 1255 2.740055 CCACTGGCAGCAGTCGAC 60.740 66.667 15.89 7.70 32.26 4.20
1229 1256 2.917227 TCCACTGGCAGCAGTCGA 60.917 61.111 15.89 0.00 32.26 4.20
1230 1257 2.433838 CTCCACTGGCAGCAGTCG 60.434 66.667 15.89 0.00 32.26 4.18
1275 1302 1.949133 CGCGACGACATGGGTATGG 60.949 63.158 0.00 0.00 38.66 2.74
1276 1303 2.585869 GCGCGACGACATGGGTATG 61.586 63.158 12.10 0.00 40.24 2.39
1277 1304 2.279252 GCGCGACGACATGGGTAT 60.279 61.111 12.10 0.00 0.00 2.73
1278 1305 3.445687 AGCGCGACGACATGGGTA 61.446 61.111 12.10 0.00 0.00 3.69
1280 1307 4.794439 TCAGCGCGACGACATGGG 62.794 66.667 12.10 0.00 0.00 4.00
1344 1371 3.008517 TCCAGATGCGGCAGGGAA 61.009 61.111 15.70 3.36 0.00 3.97
1378 1580 0.881118 CGGCCAGTAATGCTGTTGTT 59.119 50.000 2.24 0.00 43.55 2.83
1379 1581 0.250727 ACGGCCAGTAATGCTGTTGT 60.251 50.000 2.24 0.00 45.81 3.32
1387 1589 2.055299 CGGGGATACGGCCAGTAAT 58.945 57.895 2.24 0.00 39.04 1.89
1406 1617 1.039856 TGCCAAAGAACCCAGAAAGC 58.960 50.000 0.00 0.00 0.00 3.51
1424 1635 9.495572 GGGATAGGTTAAGATATCTCAAGTTTG 57.504 37.037 5.51 0.00 30.57 2.93
1467 1686 2.266055 GGAGGCACTTCCACCGAG 59.734 66.667 0.00 0.00 41.55 4.63
1524 2085 5.799213 ACTTTATATGGCTCATAGGCTGAC 58.201 41.667 0.00 0.00 41.96 3.51
1528 2089 6.241645 AGGAAACTTTATATGGCTCATAGGC 58.758 40.000 0.00 0.00 37.44 3.93
1536 2097 5.445964 TCCTTGGAGGAAACTTTATATGGC 58.554 41.667 0.00 0.00 42.51 4.40
1583 2144 7.657023 TCTAGGTTGAGATACCTTAGAAACC 57.343 40.000 0.00 0.00 46.39 3.27
1611 2172 1.384525 CTAGCGTGCTCAGGTCTACT 58.615 55.000 0.00 0.00 0.00 2.57
1627 2188 0.829333 ACATGAGGCCAGTCAGCTAG 59.171 55.000 5.01 0.00 0.00 3.42
1635 2196 1.300971 CGTTCACCACATGAGGCCAG 61.301 60.000 9.34 0.00 38.99 4.85
1662 2223 5.073691 AGAAAGATGAAGGGACCTCAAAGAA 59.926 40.000 0.00 0.00 0.00 2.52
1684 2245 3.872240 GCACTAATTAGGCCACAACCAGA 60.872 47.826 16.73 0.00 0.00 3.86
1685 2246 2.423538 GCACTAATTAGGCCACAACCAG 59.576 50.000 16.73 2.08 0.00 4.00
1694 2255 2.608090 GACTGGTTCGCACTAATTAGGC 59.392 50.000 16.73 14.66 0.00 3.93
1695 2256 2.858344 CGACTGGTTCGCACTAATTAGG 59.142 50.000 16.73 6.96 41.87 2.69
1765 2326 4.268359 ACCGGGTTGTAAAAGTTGTTGTA 58.732 39.130 6.32 0.00 0.00 2.41
1777 2338 0.881159 CAAGACGCAACCGGGTTGTA 60.881 55.000 33.64 0.00 44.40 2.41
1780 2341 1.452470 AACAAGACGCAACCGGGTT 60.452 52.632 6.59 6.59 38.64 4.11
1803 2364 5.502079 TGTTTGAGTCTTGTTAGGTTCCAA 58.498 37.500 0.00 0.00 0.00 3.53
1824 2385 7.495934 CCATTGTTATTTTCGAGGTAGAGATGT 59.504 37.037 0.00 0.00 0.00 3.06
1836 2397 9.051679 TGACCATATAGTCCATTGTTATTTTCG 57.948 33.333 0.00 0.00 35.83 3.46
1840 2401 7.749666 AGCTGACCATATAGTCCATTGTTATT 58.250 34.615 0.00 0.00 35.83 1.40
1911 2475 5.617751 GCTCATCATGTTGTTACCTTGTGTC 60.618 44.000 3.76 0.00 0.00 3.67
1912 2476 4.216257 GCTCATCATGTTGTTACCTTGTGT 59.784 41.667 3.76 0.00 0.00 3.72
1991 2558 7.571026 CGCTTTGATTCCATATGAGAAAGTAG 58.429 38.462 3.65 4.90 0.00 2.57
1993 2560 5.220931 GCGCTTTGATTCCATATGAGAAAGT 60.221 40.000 3.65 0.00 0.00 2.66
2002 2569 2.564771 CCTCTGCGCTTTGATTCCATA 58.435 47.619 9.73 0.00 0.00 2.74
2017 2584 0.524862 GAACATTGTGGCAGCCTCTG 59.475 55.000 14.15 7.09 34.12 3.35
2045 2612 2.683968 TCAGGTGTAACTCGTGCAATC 58.316 47.619 0.00 0.00 36.74 2.67
2052 2619 3.000727 GTTTCCCATCAGGTGTAACTCG 58.999 50.000 0.00 0.00 36.74 4.18
2058 2625 2.899256 CAATTGGTTTCCCATCAGGTGT 59.101 45.455 0.00 0.00 41.49 4.16
2131 2698 8.023128 CCCAGTAATGTTGTTCAAACTAAGATG 58.977 37.037 0.00 0.00 0.00 2.90
2136 2703 4.521256 GGCCCAGTAATGTTGTTCAAACTA 59.479 41.667 0.00 0.00 0.00 2.24
2197 2764 3.027412 GGTTGCCAGAGAGATGTAGAGA 58.973 50.000 0.00 0.00 0.00 3.10
2203 2770 0.617413 AGGTGGTTGCCAGAGAGATG 59.383 55.000 0.00 0.00 32.34 2.90
2205 2772 0.471780 TCAGGTGGTTGCCAGAGAGA 60.472 55.000 0.00 0.00 32.34 3.10
2251 2818 6.376864 TCCAACAGAGTCAAATTTGTGAGAAA 59.623 34.615 17.47 0.00 0.00 2.52
2269 2917 6.169094 AGTGATTGTCAGTTAGATCCAACAG 58.831 40.000 6.79 0.00 0.00 3.16
2282 2931 4.520111 TCAAACCATCCAAGTGATTGTCAG 59.480 41.667 0.00 0.00 28.45 3.51
2284 2933 5.649782 ATCAAACCATCCAAGTGATTGTC 57.350 39.130 0.00 0.00 28.45 3.18
2351 3030 2.802247 GCAATCATCGGATCATTCACGA 59.198 45.455 0.00 0.00 41.20 4.35
2353 3032 4.556942 TTGCAATCATCGGATCATTCAC 57.443 40.909 0.00 0.00 31.88 3.18
2355 3034 5.824429 TCTTTTGCAATCATCGGATCATTC 58.176 37.500 0.00 0.00 31.88 2.67
2356 3035 5.840243 TCTTTTGCAATCATCGGATCATT 57.160 34.783 0.00 0.00 31.88 2.57
2357 3036 5.125900 TGTTCTTTTGCAATCATCGGATCAT 59.874 36.000 0.00 0.00 31.88 2.45
2361 3040 3.820467 ACTGTTCTTTTGCAATCATCGGA 59.180 39.130 0.00 0.00 0.00 4.55
2362 3041 4.164822 ACTGTTCTTTTGCAATCATCGG 57.835 40.909 0.00 0.00 0.00 4.18
2363 3042 7.246311 AGATAACTGTTCTTTTGCAATCATCG 58.754 34.615 0.00 0.00 0.00 3.84
2364 3043 9.713740 CTAGATAACTGTTCTTTTGCAATCATC 57.286 33.333 0.00 0.00 0.00 2.92
2365 3044 9.236006 ACTAGATAACTGTTCTTTTGCAATCAT 57.764 29.630 0.00 0.00 0.00 2.45
2366 3045 8.621532 ACTAGATAACTGTTCTTTTGCAATCA 57.378 30.769 0.00 0.00 0.00 2.57
2391 3070 9.573166 CCTACCACAATCTCCAATTGATTAATA 57.427 33.333 7.12 0.00 33.38 0.98
2392 3071 8.061304 ACCTACCACAATCTCCAATTGATTAAT 58.939 33.333 7.12 0.00 33.38 1.40
2393 3072 7.410174 ACCTACCACAATCTCCAATTGATTAA 58.590 34.615 7.12 0.00 33.38 1.40
2415 3094 1.636003 GGAGGAACCCATTCTGAACCT 59.364 52.381 0.00 0.00 34.98 3.50
2532 3211 5.234329 CGTATCGTTTATTCCTGTGCTTGAT 59.766 40.000 0.00 0.00 0.00 2.57
2549 3228 3.604875 ACCAATCTGGAAACGTATCGT 57.395 42.857 0.00 0.00 40.96 3.73
2555 3234 4.627467 CACTAGAGAACCAATCTGGAAACG 59.373 45.833 0.00 0.00 40.96 3.60
2673 3352 7.975616 CCACCAGATATATTGTTTGAACCAAAG 59.024 37.037 0.00 0.00 33.82 2.77
2698 3377 3.297134 TCTGGGCAATTGAGGTATTCC 57.703 47.619 10.34 0.00 0.00 3.01
2763 3442 1.003464 ACCCCAAAATTTGATGGCAGC 59.997 47.619 7.37 0.00 35.28 5.25
2783 3462 2.023404 TGTATCCTAGACAGGCCTGGAA 60.023 50.000 35.42 19.21 42.30 3.53
2789 3468 6.096282 GGAAGATAGATGTATCCTAGACAGGC 59.904 46.154 6.26 0.00 42.30 4.85
2803 3482 9.347240 ACCTGTGAAATAATTGGAAGATAGATG 57.653 33.333 0.00 0.00 0.00 2.90
2852 3531 8.244113 CCAAAACCAAGGAGTATAAGTTCAATC 58.756 37.037 0.00 0.00 0.00 2.67
2873 3552 5.350504 TTCAAGAAGATTGTTGGCCAAAA 57.649 34.783 22.47 13.43 36.44 2.44
2917 3596 6.498304 ACAGAATTGACATGTCACTTGTTTC 58.502 36.000 29.57 22.89 39.66 2.78
2942 3621 7.280876 TGCCAGAGAAGCTATTGTTACTTAATG 59.719 37.037 0.00 0.00 0.00 1.90
2943 3622 7.338710 TGCCAGAGAAGCTATTGTTACTTAAT 58.661 34.615 0.00 0.00 0.00 1.40
3008 3687 3.008375 TCTGTTGCTTGCCAGATCTAAGT 59.992 43.478 0.00 0.00 32.93 2.24
3009 3688 3.603532 TCTGTTGCTTGCCAGATCTAAG 58.396 45.455 0.00 0.00 32.93 2.18
3024 3703 3.426695 GCAATGTTCCGGAGAATCTGTTG 60.427 47.826 3.34 5.91 40.87 3.33
3079 3758 3.120792 TGTTGTTGCTCAGACGTAGAAC 58.879 45.455 0.00 0.00 0.00 3.01
3087 3766 4.696877 CCATAGAACATGTTGTTGCTCAGA 59.303 41.667 17.58 0.00 41.28 3.27
3184 3863 8.446714 AGATTTGATAGATGATGAGGTATGGT 57.553 34.615 0.00 0.00 0.00 3.55
3230 3909 0.613572 TGTGCCAGGATCCAGTACGA 60.614 55.000 15.82 3.30 0.00 3.43
3249 3928 9.671279 GATGAAAGTGGGGAAAATTTAATGATT 57.329 29.630 0.00 0.00 0.00 2.57
3256 3935 7.516452 TCAATTGATGAAAGTGGGGAAAATTT 58.484 30.769 3.38 0.00 34.59 1.82
3266 3945 6.802608 ACTGGCATATCAATTGATGAAAGTG 58.197 36.000 27.59 18.28 42.54 3.16
3268 3947 8.162878 ACTACTGGCATATCAATTGATGAAAG 57.837 34.615 27.59 18.96 42.54 2.62
3408 5151 9.918630 CAAGACAAGTTCAAATTTATCAATCCT 57.081 29.630 0.00 0.00 0.00 3.24
3421 5164 7.345422 TCAATTGATTCCAAGACAAGTTCAA 57.655 32.000 3.38 0.00 35.48 2.69
3480 5223 1.511850 TGTCAAGCGACTCCAATGTG 58.488 50.000 0.00 0.00 43.06 3.21
3492 5235 9.374960 GAAATATTATTGTTCGAGATGTCAAGC 57.625 33.333 0.00 0.00 0.00 4.01
3537 5280 7.317390 TGCTCAAGTACGTTAGATTTGATACA 58.683 34.615 0.00 0.00 0.00 2.29
3538 5281 7.751047 TGCTCAAGTACGTTAGATTTGATAC 57.249 36.000 0.00 0.00 0.00 2.24
3567 5310 7.038531 TGCTAGATGATTATAGGAGAGGTCT 57.961 40.000 0.00 0.00 0.00 3.85
3573 5316 7.953005 TCTTCCTGCTAGATGATTATAGGAG 57.047 40.000 0.00 1.77 37.25 3.69
3717 5460 4.142609 TCTCTGTTGATGGTAATGCTCC 57.857 45.455 0.00 0.00 0.00 4.70
3718 5461 5.064452 CACTTCTCTGTTGATGGTAATGCTC 59.936 44.000 0.00 0.00 0.00 4.26
3722 5465 7.009179 TCTTCACTTCTCTGTTGATGGTAAT 57.991 36.000 0.00 0.00 0.00 1.89
3724 5467 6.042093 AGTTCTTCACTTCTCTGTTGATGGTA 59.958 38.462 0.00 0.00 27.32 3.25
3736 5479 5.067936 TCGACTCTGAAAGTTCTTCACTTCT 59.932 40.000 0.00 0.00 45.77 2.85
3748 5494 4.747108 AGTGAACAACATCGACTCTGAAAG 59.253 41.667 0.00 0.00 0.00 2.62
3770 5516 3.412386 CCTGACCCAAGTCCAAAGTAAG 58.588 50.000 0.00 0.00 42.81 2.34
3807 5553 3.740764 GCAGAGCAATGAAAACAACCCAA 60.741 43.478 0.00 0.00 0.00 4.12
3816 5562 4.392047 TCTTGAAGAGCAGAGCAATGAAA 58.608 39.130 0.00 0.00 0.00 2.69
3820 5566 3.190953 GCTTTCTTGAAGAGCAGAGCAAT 59.809 43.478 13.34 0.00 37.57 3.56
3927 5673 9.624373 CACTAGAATTGTAGTTACCTAGTCCTA 57.376 37.037 12.35 0.00 35.87 2.94
3956 5710 4.209288 ACTCGTCATACGCTGATTTATTGC 59.791 41.667 0.00 0.00 42.21 3.56
4025 5779 7.667557 ACACTAGCACAAGTCTCTAAATACAA 58.332 34.615 0.00 0.00 0.00 2.41
4149 5927 9.334947 GGTGATCTCAGAATTTAGATTCATCAA 57.665 33.333 8.56 0.00 43.35 2.57
4159 5937 5.046376 TCAGTGCAGGTGATCTCAGAATTTA 60.046 40.000 0.00 0.00 0.00 1.40
4203 5981 9.515020 TTGAGAGTGAACAACAACAATATTTTC 57.485 29.630 0.00 0.00 0.00 2.29
4264 6042 8.821894 TGAACAACAATATTAAAAACCAGTTGC 58.178 29.630 9.64 0.00 38.82 4.17
4270 6048 8.145122 TCCCAGTGAACAACAATATTAAAAACC 58.855 33.333 0.00 0.00 0.00 3.27
4271 6049 9.705290 ATCCCAGTGAACAACAATATTAAAAAC 57.295 29.630 0.00 0.00 0.00 2.43
4273 6051 9.703892 CAATCCCAGTGAACAACAATATTAAAA 57.296 29.630 0.00 0.00 0.00 1.52
4274 6052 8.865090 ACAATCCCAGTGAACAACAATATTAAA 58.135 29.630 0.00 0.00 0.00 1.52
4275 6053 8.415950 ACAATCCCAGTGAACAACAATATTAA 57.584 30.769 0.00 0.00 0.00 1.40
4276 6054 8.415950 AACAATCCCAGTGAACAACAATATTA 57.584 30.769 0.00 0.00 0.00 0.98
4277 6055 6.916360 ACAATCCCAGTGAACAACAATATT 57.084 33.333 0.00 0.00 0.00 1.28
4278 6056 6.916360 AACAATCCCAGTGAACAACAATAT 57.084 33.333 0.00 0.00 0.00 1.28
4279 6057 6.723298 AAACAATCCCAGTGAACAACAATA 57.277 33.333 0.00 0.00 0.00 1.90
4280 6058 5.612725 AAACAATCCCAGTGAACAACAAT 57.387 34.783 0.00 0.00 0.00 2.71
4281 6059 5.413309 AAAACAATCCCAGTGAACAACAA 57.587 34.783 0.00 0.00 0.00 2.83
4282 6060 5.047021 TGAAAAACAATCCCAGTGAACAACA 60.047 36.000 0.00 0.00 0.00 3.33
4283 6061 5.415221 TGAAAAACAATCCCAGTGAACAAC 58.585 37.500 0.00 0.00 0.00 3.32
4284 6062 5.667539 TGAAAAACAATCCCAGTGAACAA 57.332 34.783 0.00 0.00 0.00 2.83
4285 6063 5.667539 TTGAAAAACAATCCCAGTGAACA 57.332 34.783 0.00 0.00 33.18 3.18
4286 6064 6.976636 TTTTGAAAAACAATCCCAGTGAAC 57.023 33.333 0.00 0.00 38.36 3.18
4287 6065 7.334090 TGATTTTGAAAAACAATCCCAGTGAA 58.666 30.769 0.00 0.00 38.36 3.18
4288 6066 6.882656 TGATTTTGAAAAACAATCCCAGTGA 58.117 32.000 0.00 0.00 38.36 3.41
4289 6067 7.441760 TCATGATTTTGAAAAACAATCCCAGTG 59.558 33.333 4.74 0.00 38.36 3.66
4290 6068 7.507829 TCATGATTTTGAAAAACAATCCCAGT 58.492 30.769 4.74 0.00 38.36 4.00
4847 6634 0.108329 TGCTAGACTAGGCCAAACGC 60.108 55.000 5.01 0.00 0.00 4.84


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.