Multiple sequence alignment - TraesCS4A01G311400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G311400 chr4A 100.000 5322 0 0 1 5322 603469137 603463816 0.000000e+00 9828.0
1 TraesCS4A01G311400 chr4A 94.265 680 39 0 1 680 603389877 603390556 0.000000e+00 1040.0
2 TraesCS4A01G311400 chr4A 90.022 451 32 5 2572 3018 603392239 603392680 5.980000e-159 571.0
3 TraesCS4A01G311400 chr4A 91.770 243 20 0 1199 1441 741611477 741611719 6.600000e-89 339.0
4 TraesCS4A01G311400 chr4A 81.726 394 28 14 1881 2251 603391777 603392149 6.740000e-74 289.0
5 TraesCS4A01G311400 chr4A 93.431 137 9 0 2663 2799 603382196 603382332 2.510000e-48 204.0
6 TraesCS4A01G311400 chr4A 87.079 178 17 5 3236 3411 603392788 603392961 4.200000e-46 196.0
7 TraesCS4A01G311400 chr4A 88.889 90 8 2 4133 4221 603393645 603393733 5.640000e-20 110.0
8 TraesCS4A01G311400 chr4A 92.063 63 5 0 1715 1777 603391705 603391767 7.340000e-14 89.8
9 TraesCS4A01G311400 chr4D 86.876 1082 94 16 71 1114 1325323 1326394 0.000000e+00 1168.0
10 TraesCS4A01G311400 chr4D 83.065 868 96 35 2573 3411 1328452 1329297 0.000000e+00 741.0
11 TraesCS4A01G311400 chr4D 83.883 819 76 29 3224 4003 1383700 1382899 0.000000e+00 730.0
12 TraesCS4A01G311400 chr4D 92.135 445 23 4 2572 3015 1385325 1384892 7.570000e-173 617.0
13 TraesCS4A01G311400 chr4D 83.144 706 64 37 987 1658 1386783 1386099 1.280000e-165 593.0
14 TraesCS4A01G311400 chr4D 84.916 537 49 13 1480 1998 1327387 1327909 1.020000e-141 514.0
15 TraesCS4A01G311400 chr4D 83.742 449 58 10 989 1434 1407067 1406631 1.380000e-110 411.0
16 TraesCS4A01G311400 chr4D 94.239 243 12 2 1197 1438 1326390 1326631 2.340000e-98 370.0
17 TraesCS4A01G311400 chr4D 93.878 245 12 3 4108 4350 1382816 1382573 3.030000e-97 366.0
18 TraesCS4A01G311400 chr4D 91.266 229 16 3 4126 4350 1405468 1405240 5.180000e-80 309.0
19 TraesCS4A01G311400 chr4D 91.837 196 16 0 2579 2774 1404094 1403899 1.890000e-69 274.0
20 TraesCS4A01G311400 chr4D 91.099 191 11 3 2016 2206 1327975 1328159 2.460000e-63 254.0
21 TraesCS4A01G311400 chr4D 91.489 188 4 7 2073 2249 1404369 1404183 1.140000e-61 248.0
22 TraesCS4A01G311400 chr4D 94.872 156 8 0 4159 4314 1329748 1329903 1.480000e-60 244.0
23 TraesCS4A01G311400 chr4D 92.500 160 12 0 4155 4314 1402985 1402826 4.150000e-56 230.0
24 TraesCS4A01G311400 chr4D 91.925 161 10 1 2639 2799 1401909 1401752 6.940000e-54 222.0
25 TraesCS4A01G311400 chr4D 84.914 232 18 10 4465 4695 1382505 1382290 8.970000e-53 219.0
26 TraesCS4A01G311400 chr4D 91.837 147 12 0 2797 2943 1403814 1403668 6.990000e-49 206.0
27 TraesCS4A01G311400 chr4D 90.541 148 13 1 2796 2943 1401697 1401551 1.510000e-45 195.0
28 TraesCS4A01G311400 chr4D 86.842 152 11 4 3268 3411 1403623 1403473 1.530000e-35 161.0
29 TraesCS4A01G311400 chr4D 80.851 188 22 5 3003 3180 1384877 1384694 9.300000e-28 135.0
30 TraesCS4A01G311400 chr4D 90.217 92 9 0 3315 3406 1405845 1405754 2.600000e-23 121.0
31 TraesCS4A01G311400 chr4D 89.362 47 5 0 3519 3565 1329609 1329655 5.760000e-05 60.2
32 TraesCS4A01G311400 chr4B 85.739 1143 113 24 1 1114 1767694 1768815 0.000000e+00 1162.0
33 TraesCS4A01G311400 chr4B 87.265 903 45 15 2572 3411 1983328 1982433 0.000000e+00 966.0
34 TraesCS4A01G311400 chr4B 82.935 879 86 41 2573 3411 1770528 1771382 0.000000e+00 734.0
35 TraesCS4A01G311400 chr4B 88.161 473 42 10 986 1452 1985554 1985090 7.790000e-153 551.0
36 TraesCS4A01G311400 chr4B 76.762 908 118 55 4118 4965 1772133 1773007 6.370000e-114 422.0
37 TraesCS4A01G311400 chr4B 86.726 339 32 9 2212 2549 1770213 1770539 1.090000e-96 364.0
38 TraesCS4A01G311400 chr4B 92.181 243 19 0 1199 1441 1768813 1769055 1.420000e-90 344.0
39 TraesCS4A01G311400 chr4B 79.015 467 53 15 1491 1926 1769320 1769772 1.460000e-70 278.0
40 TraesCS4A01G311400 chr4B 89.732 224 14 6 2028 2251 1983632 1983418 1.460000e-70 278.0
41 TraesCS4A01G311400 chr4B 91.584 202 12 4 4117 4314 1981660 1981460 1.890000e-69 274.0
42 TraesCS4A01G311400 chr4B 83.696 276 44 1 5044 5319 1773021 1773295 5.290000e-65 259.0
43 TraesCS4A01G311400 chr4B 91.772 158 11 1 4159 4314 1999013 1998856 8.970000e-53 219.0
44 TraesCS4A01G311400 chr5B 90.535 243 23 0 1199 1441 636915298 636915056 6.650000e-84 322.0
45 TraesCS4A01G311400 chr5B 89.300 243 26 0 1199 1441 234045336 234045578 6.700000e-79 305.0
46 TraesCS4A01G311400 chr6B 86.032 315 24 4 1138 1452 442429365 442429071 2.390000e-83 320.0
47 TraesCS4A01G311400 chr7A 85.397 315 25 5 1138 1452 655544879 655545172 1.860000e-79 307.0
48 TraesCS4A01G311400 chr7A 94.444 162 7 2 2091 2252 498451552 498451393 1.140000e-61 248.0
49 TraesCS4A01G311400 chr7A 87.923 207 15 7 2046 2252 315703436 315703240 8.910000e-58 235.0
50 TraesCS4A01G311400 chr3B 89.300 243 26 0 1199 1441 271101290 271101048 6.700000e-79 305.0
51 TraesCS4A01G311400 chr3B 76.844 583 110 15 1 576 825290109 825289545 6.700000e-79 305.0
52 TraesCS4A01G311400 chr3B 93.651 63 4 0 10 72 823976634 823976572 1.580000e-15 95.3
53 TraesCS4A01G311400 chr2D 86.325 234 32 0 2 235 426434326 426434559 6.840000e-64 255.0
54 TraesCS4A01G311400 chr2B 86.325 234 32 0 2 235 503453431 503453664 6.840000e-64 255.0
55 TraesCS4A01G311400 chr2B 86.829 205 15 8 2046 2250 490589279 490589087 8.970000e-53 219.0
56 TraesCS4A01G311400 chr2A 86.147 231 32 0 5 235 562508630 562508400 3.180000e-62 250.0
57 TraesCS4A01G311400 chrUn 93.827 162 8 2 2091 2252 62125499 62125340 5.330000e-60 243.0
58 TraesCS4A01G311400 chr1A 92.593 162 10 2 2091 2252 46480536 46480377 1.150000e-56 231.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G311400 chr4A 603463816 603469137 5321 True 9828.000000 9828 100.000000 1 5322 1 chr4A.!!$R1 5321
1 TraesCS4A01G311400 chr4A 603389877 603393733 3856 False 382.633333 1040 89.007333 1 4221 6 chr4A.!!$F3 4220
2 TraesCS4A01G311400 chr4D 1325323 1329903 4580 False 478.742857 1168 89.204143 71 4314 7 chr4D.!!$F1 4243
3 TraesCS4A01G311400 chr4D 1382290 1386783 4493 True 443.333333 730 86.467500 987 4695 6 chr4D.!!$R1 3708
4 TraesCS4A01G311400 chr4D 1401551 1407067 5516 True 237.700000 411 90.219600 989 4350 10 chr4D.!!$R2 3361
5 TraesCS4A01G311400 chr4B 1981460 1985554 4094 True 517.250000 966 89.185500 986 4314 4 chr4B.!!$R2 3328
6 TraesCS4A01G311400 chr4B 1767694 1773295 5601 False 509.000000 1162 83.864857 1 5319 7 chr4B.!!$F1 5318
7 TraesCS4A01G311400 chr3B 825289545 825290109 564 True 305.000000 305 76.844000 1 576 1 chr3B.!!$R3 575

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
866 1468 0.387622 CTTTCCTCCGTCGTTGCGTA 60.388 55.0 0.00 0.0 0.00 4.42 F
1661 5479 0.035739 TGGGTCTCTTTTGTACCGGC 59.964 55.0 0.00 0.0 33.89 6.13 F
2333 6412 0.179018 AGGCAGCGAGGTTGACTTTT 60.179 50.0 0.00 0.0 23.56 2.27 F
3656 9305 0.770499 TCCATGGCTGGTGTTGAGAA 59.230 50.0 6.96 0.0 43.61 2.87 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1684 5506 0.530744 TCGCAGCATTTACTCGGACT 59.469 50.0 0.00 0.00 0.00 3.85 R
3265 8413 0.031178 GTGCTTGGGCTCAACACAAG 59.969 55.0 20.32 3.31 43.28 3.16 R
3717 9382 0.023732 GTCATCGACGCAATGTGACG 59.976 55.0 11.94 11.94 31.15 4.35 R
5074 11696 0.105964 CCCTTGTCGGACAACACAGA 59.894 55.0 19.07 0.00 33.96 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
89 90 1.593296 GCGGTGAAGTCGTCCCTAGT 61.593 60.000 0.00 0.00 0.00 2.57
153 154 2.123854 ATGAGCGGCGGTAGGAGA 60.124 61.111 13.22 0.00 0.00 3.71
219 220 2.177950 GTCGTAGAGGCAGACGGAA 58.822 57.895 6.10 0.00 39.53 4.30
221 222 1.068055 GTCGTAGAGGCAGACGGAAAA 60.068 52.381 6.10 0.00 39.53 2.29
272 273 1.756690 GCTCCTAATCGGGTAGGTGGA 60.757 57.143 10.86 0.00 41.40 4.02
577 583 3.240134 AACGACGACATGGCTGGCT 62.240 57.895 0.00 0.00 0.00 4.75
628 635 3.455910 CTGTGAGGAATGGAGGGATTGTA 59.544 47.826 0.00 0.00 0.00 2.41
649 656 1.536907 TGGGCCTAGGGTTTCACGA 60.537 57.895 11.72 0.00 0.00 4.35
680 687 4.141597 GGCCTGACTTCCTTCTTTATAGCT 60.142 45.833 0.00 0.00 0.00 3.32
681 688 4.813697 GCCTGACTTCCTTCTTTATAGCTG 59.186 45.833 0.00 0.00 0.00 4.24
693 1159 9.134734 CCTTCTTTATAGCTGATCGATACTTTC 57.865 37.037 0.00 0.00 0.00 2.62
703 1169 6.677781 TGATCGATACTTTCCCAAAATCAC 57.322 37.500 0.00 0.00 0.00 3.06
704 1170 5.588648 TGATCGATACTTTCCCAAAATCACC 59.411 40.000 0.00 0.00 0.00 4.02
705 1171 5.174037 TCGATACTTTCCCAAAATCACCT 57.826 39.130 0.00 0.00 0.00 4.00
710 1176 3.834231 ACTTTCCCAAAATCACCTCATGG 59.166 43.478 0.00 0.00 39.83 3.66
716 1182 5.656416 TCCCAAAATCACCTCATGGATTAAC 59.344 40.000 0.00 0.00 33.57 2.01
769 1235 4.096382 CACAATCAAAACTTATCCCTCCGG 59.904 45.833 0.00 0.00 0.00 5.14
794 1391 8.336080 GGATACGGAAATCAAGTCAAATCTTAC 58.664 37.037 0.00 0.00 0.00 2.34
803 1400 7.246674 TCAAGTCAAATCTTACCATATTCGC 57.753 36.000 0.00 0.00 0.00 4.70
855 1452 8.857098 ACCAAGACTAAATTAAAACTTTCCTCC 58.143 33.333 0.00 0.00 0.00 4.30
856 1453 8.021396 CCAAGACTAAATTAAAACTTTCCTCCG 58.979 37.037 0.00 0.00 0.00 4.63
858 1455 8.320396 AGACTAAATTAAAACTTTCCTCCGTC 57.680 34.615 0.00 0.00 0.00 4.79
860 1457 6.707608 ACTAAATTAAAACTTTCCTCCGTCGT 59.292 34.615 0.00 0.00 0.00 4.34
866 1468 0.387622 CTTTCCTCCGTCGTTGCGTA 60.388 55.000 0.00 0.00 0.00 4.42
932 1546 1.684248 CCCTCCATCCTTCCTTGCTTG 60.684 57.143 0.00 0.00 0.00 4.01
933 1547 1.101331 CTCCATCCTTCCTTGCTTGC 58.899 55.000 0.00 0.00 0.00 4.01
935 1549 1.006281 TCCATCCTTCCTTGCTTGCAT 59.994 47.619 0.00 0.00 0.00 3.96
945 1559 2.547211 CCTTGCTTGCATCTATCTTCCG 59.453 50.000 0.00 0.00 0.00 4.30
1012 1660 0.893447 AGAAAAGATGCTGCCTTGGC 59.107 50.000 4.43 4.43 0.00 4.52
1121 1769 3.294214 CAATAGTCACCGGTACCTACCT 58.706 50.000 6.87 0.00 44.25 3.08
1126 1775 0.756815 CACCGGTACCTACCTACCCC 60.757 65.000 6.87 0.00 44.25 4.95
1164 1843 2.544694 CCCTCGTTCCATCTGATTCGAG 60.545 54.545 16.82 16.82 42.30 4.04
1167 1846 2.112522 CGTTCCATCTGATTCGAGTCG 58.887 52.381 6.09 6.09 0.00 4.18
1168 1847 1.855360 GTTCCATCTGATTCGAGTCGC 59.145 52.381 7.92 0.00 0.00 5.19
1170 1849 1.066152 TCCATCTGATTCGAGTCGCTG 59.934 52.381 7.92 0.00 0.00 5.18
1171 1850 1.066152 CCATCTGATTCGAGTCGCTGA 59.934 52.381 7.92 4.24 0.00 4.26
1173 1852 3.379240 CATCTGATTCGAGTCGCTGAAT 58.621 45.455 7.92 2.35 37.52 2.57
1174 1853 3.071786 TCTGATTCGAGTCGCTGAATC 57.928 47.619 7.92 12.46 46.77 2.52
1179 1858 2.279469 CGAGTCGCTGAATCGGTTC 58.721 57.895 16.60 0.08 44.58 3.62
1180 1859 1.140407 CGAGTCGCTGAATCGGTTCC 61.140 60.000 16.60 0.00 44.58 3.62
1181 1860 0.806492 GAGTCGCTGAATCGGTTCCC 60.806 60.000 5.84 0.00 33.26 3.97
1182 1861 1.218316 GTCGCTGAATCGGTTCCCT 59.782 57.895 5.84 0.00 33.26 4.20
1183 1862 1.084370 GTCGCTGAATCGGTTCCCTG 61.084 60.000 5.84 0.00 33.26 4.45
1184 1863 2.464459 CGCTGAATCGGTTCCCTGC 61.464 63.158 5.84 6.99 33.26 4.85
1185 1864 2.115291 GCTGAATCGGTTCCCTGCC 61.115 63.158 5.84 0.00 33.26 4.85
1186 1865 1.299648 CTGAATCGGTTCCCTGCCA 59.700 57.895 5.84 0.00 33.26 4.92
1187 1866 0.107017 CTGAATCGGTTCCCTGCCAT 60.107 55.000 5.84 0.00 33.26 4.40
1188 1867 0.394216 TGAATCGGTTCCCTGCCATG 60.394 55.000 5.84 0.00 33.26 3.66
1189 1868 1.728490 GAATCGGTTCCCTGCCATGC 61.728 60.000 0.00 0.00 0.00 4.06
1190 1869 3.721370 ATCGGTTCCCTGCCATGCC 62.721 63.158 0.00 0.00 0.00 4.40
1452 4167 3.706373 GGCAGCCCCACTTCTCGA 61.706 66.667 0.00 0.00 0.00 4.04
1454 4169 1.686325 GGCAGCCCCACTTCTCGATA 61.686 60.000 0.00 0.00 0.00 2.92
1522 5325 1.623811 GTTCAGTTAGACAGGGGCTGA 59.376 52.381 0.00 0.00 35.18 4.26
1564 5367 4.957759 CAACATCTGCATCATGACTTCA 57.042 40.909 11.75 0.00 0.00 3.02
1624 5442 2.288666 TCAGCAGGTTTCTGTCAACAC 58.711 47.619 0.00 0.00 42.78 3.32
1625 5443 1.334869 CAGCAGGTTTCTGTCAACACC 59.665 52.381 0.00 0.00 42.78 4.16
1647 5465 3.002348 CGAGCCGATTTAATTTCTGGGTC 59.998 47.826 13.08 13.08 39.85 4.46
1659 5477 3.396260 TTCTGGGTCTCTTTTGTACCG 57.604 47.619 0.00 0.00 33.89 4.02
1660 5478 1.621814 TCTGGGTCTCTTTTGTACCGG 59.378 52.381 0.00 0.00 33.89 5.28
1661 5479 0.035739 TGGGTCTCTTTTGTACCGGC 59.964 55.000 0.00 0.00 33.89 6.13
1664 5482 1.675116 GGTCTCTTTTGTACCGGCTCC 60.675 57.143 0.00 0.00 0.00 4.70
1665 5483 0.245539 TCTCTTTTGTACCGGCTCCG 59.754 55.000 0.00 0.48 39.44 4.63
1670 5488 2.102109 TTTGTACCGGCTCCGCTTGA 62.102 55.000 0.00 0.00 38.24 3.02
1673 5495 3.305177 TACCGGCTCCGCTTGAACC 62.305 63.158 0.00 0.00 38.24 3.62
1684 5506 4.580868 TCCGCTTGAACCATAACATGTTA 58.419 39.130 20.14 20.14 0.00 2.41
1687 5509 5.447279 CCGCTTGAACCATAACATGTTAGTC 60.447 44.000 22.03 15.99 0.00 2.59
1688 5510 5.447279 CGCTTGAACCATAACATGTTAGTCC 60.447 44.000 22.03 5.95 0.00 3.85
1702 5537 2.203800 TAGTCCGAGTAAATGCTGCG 57.796 50.000 0.00 0.00 0.00 5.18
1804 5674 8.699130 AGATTTCCAAATTTTAAGGAGGCTATG 58.301 33.333 0.00 0.00 32.11 2.23
1955 5839 2.886862 TCTTGCACCACAACAATTGG 57.113 45.000 10.83 0.00 40.32 3.16
1956 5840 1.202510 TCTTGCACCACAACAATTGGC 60.203 47.619 10.83 2.00 37.69 4.52
2048 6005 5.874892 CTTGCTCAAGCGTACTCTAATAC 57.125 43.478 0.00 0.00 45.83 1.89
2251 6329 6.388689 TGAACCCAGTTAACATACCCTGATAT 59.611 38.462 8.61 0.00 0.00 1.63
2252 6330 6.187727 ACCCAGTTAACATACCCTGATATG 57.812 41.667 8.61 0.00 38.34 1.78
2253 6331 5.908831 ACCCAGTTAACATACCCTGATATGA 59.091 40.000 8.61 0.00 36.27 2.15
2254 6332 6.562608 ACCCAGTTAACATACCCTGATATGAT 59.437 38.462 8.61 0.00 36.27 2.45
2255 6333 7.737607 ACCCAGTTAACATACCCTGATATGATA 59.262 37.037 8.61 0.00 36.27 2.15
2256 6334 8.602424 CCCAGTTAACATACCCTGATATGATAA 58.398 37.037 8.61 0.00 36.27 1.75
2308 6387 5.999205 TGTCAATTTTATTCCAGTGGCAT 57.001 34.783 3.51 0.83 0.00 4.40
2328 6407 4.020617 CCCAGGCAGCGAGGTTGA 62.021 66.667 0.00 0.00 0.00 3.18
2333 6412 0.179018 AGGCAGCGAGGTTGACTTTT 60.179 50.000 0.00 0.00 23.56 2.27
2373 6452 2.154462 GAATGGCCCCTTGATGTATCG 58.846 52.381 0.00 0.00 0.00 2.92
2414 6493 4.610333 TGCTCCTGAACTCTGAACCTATA 58.390 43.478 0.00 0.00 0.00 1.31
2415 6494 5.211973 TGCTCCTGAACTCTGAACCTATAT 58.788 41.667 0.00 0.00 0.00 0.86
2416 6495 6.373759 TGCTCCTGAACTCTGAACCTATATA 58.626 40.000 0.00 0.00 0.00 0.86
2417 6496 6.839134 TGCTCCTGAACTCTGAACCTATATAA 59.161 38.462 0.00 0.00 0.00 0.98
2418 6497 7.510685 TGCTCCTGAACTCTGAACCTATATAAT 59.489 37.037 0.00 0.00 0.00 1.28
2484 6563 5.704978 TGCAAATTGTATCAGCAGACAGTTA 59.295 36.000 0.00 0.00 0.00 2.24
2524 6611 6.712179 ATTTCTCCTAACCCTACTAGTTCG 57.288 41.667 0.00 0.00 0.00 3.95
2546 6633 4.555313 CGTTTCTACGTCACCTAACTGTCA 60.555 45.833 0.00 0.00 42.72 3.58
2547 6634 5.467705 GTTTCTACGTCACCTAACTGTCAT 58.532 41.667 0.00 0.00 0.00 3.06
2548 6635 4.696899 TCTACGTCACCTAACTGTCATG 57.303 45.455 0.00 0.00 0.00 3.07
2549 6636 4.329392 TCTACGTCACCTAACTGTCATGA 58.671 43.478 0.00 0.00 0.00 3.07
2550 6637 4.948004 TCTACGTCACCTAACTGTCATGAT 59.052 41.667 0.00 0.00 0.00 2.45
2551 6638 4.111375 ACGTCACCTAACTGTCATGATC 57.889 45.455 0.00 0.00 0.00 2.92
2552 6639 3.119101 ACGTCACCTAACTGTCATGATCC 60.119 47.826 0.00 0.00 0.00 3.36
2553 6640 3.131223 CGTCACCTAACTGTCATGATCCT 59.869 47.826 0.00 0.00 0.00 3.24
2554 6641 4.688021 GTCACCTAACTGTCATGATCCTC 58.312 47.826 0.00 0.00 0.00 3.71
2555 6642 3.706594 TCACCTAACTGTCATGATCCTCC 59.293 47.826 0.00 0.00 0.00 4.30
2556 6643 3.708631 CACCTAACTGTCATGATCCTCCT 59.291 47.826 0.00 0.00 0.00 3.69
2557 6644 4.163078 CACCTAACTGTCATGATCCTCCTT 59.837 45.833 0.00 0.00 0.00 3.36
2558 6645 4.785376 ACCTAACTGTCATGATCCTCCTTT 59.215 41.667 0.00 0.00 0.00 3.11
2559 6646 5.251700 ACCTAACTGTCATGATCCTCCTTTT 59.748 40.000 0.00 0.00 0.00 2.27
2560 6647 5.819901 CCTAACTGTCATGATCCTCCTTTTC 59.180 44.000 0.00 0.00 0.00 2.29
2561 6648 5.511386 AACTGTCATGATCCTCCTTTTCT 57.489 39.130 0.00 0.00 0.00 2.52
2562 6649 6.627087 AACTGTCATGATCCTCCTTTTCTA 57.373 37.500 0.00 0.00 0.00 2.10
2563 6650 6.627087 ACTGTCATGATCCTCCTTTTCTAA 57.373 37.500 0.00 0.00 0.00 2.10
2564 6651 7.020827 ACTGTCATGATCCTCCTTTTCTAAA 57.979 36.000 0.00 0.00 0.00 1.85
2565 6652 7.461749 ACTGTCATGATCCTCCTTTTCTAAAA 58.538 34.615 0.00 0.00 0.00 1.52
2566 6653 7.944554 ACTGTCATGATCCTCCTTTTCTAAAAA 59.055 33.333 0.00 0.00 0.00 1.94
2606 6693 7.944061 TGTCATAATATTCAGGGCATTTTCTG 58.056 34.615 0.00 0.00 0.00 3.02
2803 6952 8.356000 TGTTTTCCCCTACCATTTACTTTATG 57.644 34.615 0.00 0.00 0.00 1.90
2819 6970 4.819630 ACTTTATGTCAAGGCAAACGAGAA 59.180 37.500 0.00 0.00 0.00 2.87
2944 7095 6.183360 GGAGATTTAAGGTATGTCTCGTTCCT 60.183 42.308 0.00 0.00 36.93 3.36
2947 7098 8.101419 AGATTTAAGGTATGTCTCGTTCCTTTT 58.899 33.333 5.48 0.00 39.00 2.27
2953 7104 7.042335 AGGTATGTCTCGTTCCTTTTAGATTG 58.958 38.462 0.00 0.00 0.00 2.67
2958 7110 4.451096 TCTCGTTCCTTTTAGATTGTGTGC 59.549 41.667 0.00 0.00 0.00 4.57
3035 7214 5.991328 GCATGAGTACTTATGCTAGCAAA 57.009 39.130 33.71 15.53 45.56 3.68
3048 7227 2.159653 GCTAGCAAACATCGTCAGTTGG 60.160 50.000 10.63 0.00 0.00 3.77
3146 7345 7.414429 CCACACGATCTTAATGACACATTTCAT 60.414 37.037 2.40 0.00 37.87 2.57
3148 7347 8.514594 ACACGATCTTAATGACACATTTCATTT 58.485 29.630 3.81 0.00 42.45 2.32
3149 7348 8.791605 CACGATCTTAATGACACATTTCATTTG 58.208 33.333 3.81 0.00 42.45 2.32
3171 7370 4.580167 TGTTTCTCTGGGTCTGAAATTGTG 59.420 41.667 0.00 0.00 33.20 3.33
3221 8352 3.771216 ACCCATTGTCTGAAAGCTGAAT 58.229 40.909 0.00 0.00 0.00 2.57
3301 8449 4.611310 AGCACGTCAAATCATGATTCAG 57.389 40.909 20.95 16.04 40.97 3.02
3417 8573 8.680903 AGCATCATAGATGGTAAACAAAGAAAG 58.319 33.333 9.70 0.00 0.00 2.62
3418 8574 8.677300 GCATCATAGATGGTAAACAAAGAAAGA 58.323 33.333 8.87 0.00 0.00 2.52
3460 8989 6.199719 CAGAAATGGAGTGCTTCTTTTGAAAC 59.800 38.462 0.00 0.00 38.07 2.78
3462 8991 2.693074 TGGAGTGCTTCTTTTGAAACCC 59.307 45.455 0.00 0.00 38.07 4.11
3465 8994 4.583073 GGAGTGCTTCTTTTGAAACCCTAA 59.417 41.667 0.00 0.00 38.07 2.69
3470 8999 6.916387 GTGCTTCTTTTGAAACCCTAACTAAC 59.084 38.462 0.00 0.00 38.07 2.34
3483 9012 6.106673 ACCCTAACTAACGACTGATTTCATG 58.893 40.000 0.00 0.00 0.00 3.07
3485 9014 5.523916 CCTAACTAACGACTGATTTCATGGG 59.476 44.000 0.00 0.00 0.00 4.00
3487 9016 2.128771 AACGACTGATTTCATGGGGG 57.871 50.000 0.00 0.00 0.00 5.40
3575 9105 3.530666 GTGCGCTTCTTTTGCAGC 58.469 55.556 9.73 0.00 39.67 5.25
3580 9110 1.955762 CGCTTCTTTTGCAGCAGTAC 58.044 50.000 0.00 0.00 38.62 2.73
3582 9112 1.955762 CTTCTTTTGCAGCAGTACGC 58.044 50.000 0.00 2.08 42.91 4.42
3594 9125 2.337583 GCAGTACGCTCAATCTTGACA 58.662 47.619 2.99 0.00 37.77 3.58
3601 9132 1.093159 CTCAATCTTGACAGCAGGGC 58.907 55.000 0.00 0.00 32.90 5.19
3619 9268 3.011708 AGGGCCTTGTGTCCATTTTAGAT 59.988 43.478 0.00 0.00 0.00 1.98
3623 9272 6.775629 GGGCCTTGTGTCCATTTTAGATTATA 59.224 38.462 0.84 0.00 0.00 0.98
3624 9273 7.451566 GGGCCTTGTGTCCATTTTAGATTATAT 59.548 37.037 0.84 0.00 0.00 0.86
3652 9301 2.345760 GGCTCCATGGCTGGTGTTG 61.346 63.158 6.96 0.00 43.61 3.33
3654 9303 1.310933 GCTCCATGGCTGGTGTTGAG 61.311 60.000 6.96 0.00 43.61 3.02
3656 9305 0.770499 TCCATGGCTGGTGTTGAGAA 59.230 50.000 6.96 0.00 43.61 2.87
3657 9306 1.144708 TCCATGGCTGGTGTTGAGAAA 59.855 47.619 6.96 0.00 43.61 2.52
3659 9308 2.233271 CATGGCTGGTGTTGAGAAACT 58.767 47.619 0.00 0.00 0.00 2.66
3661 9310 3.788227 TGGCTGGTGTTGAGAAACTAT 57.212 42.857 0.00 0.00 0.00 2.12
3662 9311 3.674997 TGGCTGGTGTTGAGAAACTATC 58.325 45.455 0.00 0.00 0.00 2.08
3666 9315 5.452777 GCTGGTGTTGAGAAACTATCAAAC 58.547 41.667 0.00 0.00 38.34 2.93
3667 9316 5.666969 TGGTGTTGAGAAACTATCAAACG 57.333 39.130 0.00 0.00 38.34 3.60
3669 9318 5.995282 TGGTGTTGAGAAACTATCAAACGAT 59.005 36.000 0.00 0.00 38.34 3.73
3685 9350 1.269621 ACGATAGGTGTAGCATTCCGC 60.270 52.381 0.00 0.00 43.77 5.54
3698 9363 4.379374 GCATTCCGCGTTATAATAACGT 57.621 40.909 4.92 0.00 44.69 3.99
3703 9368 1.859703 CGCGTTATAATAACGTGGCCA 59.140 47.619 0.00 0.00 46.61 5.36
3707 9372 4.768145 CGTTATAATAACGTGGCCATGTG 58.232 43.478 30.95 15.78 38.69 3.21
3708 9373 4.508492 CGTTATAATAACGTGGCCATGTGA 59.492 41.667 30.95 24.61 38.69 3.58
3711 9376 9.616216 CGTTATAATAACGTGGCCATGTGATGG 62.616 44.444 30.95 10.92 44.32 3.51
3720 9385 1.586422 CCATGTGATGGGATGTCGTC 58.414 55.000 0.00 0.00 46.86 4.20
3749 9415 3.230743 TCGATGACGAATTGAGCTTGA 57.769 42.857 0.00 0.00 45.74 3.02
3766 9471 3.255149 GCTTGATCTGGGAAATGGCATAG 59.745 47.826 0.00 0.00 0.00 2.23
3768 9473 3.055328 TGATCTGGGAAATGGCATAGGA 58.945 45.455 0.00 0.00 0.00 2.94
3769 9474 3.181440 TGATCTGGGAAATGGCATAGGAC 60.181 47.826 0.00 0.00 0.00 3.85
3775 9480 0.466189 AAATGGCATAGGACGGCAGG 60.466 55.000 0.00 0.00 42.76 4.85
3779 9484 1.476007 GGCATAGGACGGCAGGATCT 61.476 60.000 0.00 0.00 0.00 2.75
3819 9571 5.866207 ACTAGTCTTTTGTCCTAGGTTTGG 58.134 41.667 9.08 0.00 33.93 3.28
3829 9581 2.429610 TCCTAGGTTTGGCGATGTACTC 59.570 50.000 9.08 0.00 0.00 2.59
3830 9582 2.483188 CCTAGGTTTGGCGATGTACTCC 60.483 54.545 0.00 0.00 0.00 3.85
3831 9583 1.276622 AGGTTTGGCGATGTACTCCT 58.723 50.000 0.00 0.00 0.00 3.69
3848 9600 1.064166 TCCTTACTAGGGACCTCACCG 60.064 57.143 0.00 0.00 42.26 4.94
3872 9624 1.895707 GCACTGCACTTGGTCTGCT 60.896 57.895 0.00 0.00 35.53 4.24
3876 9628 2.282040 GCACTTGGTCTGCTGCCT 60.282 61.111 0.00 0.00 0.00 4.75
3878 9630 2.031516 CACTTGGTCTGCTGCCTCG 61.032 63.158 0.00 0.00 0.00 4.63
3879 9631 2.435586 CTTGGTCTGCTGCCTCGG 60.436 66.667 0.00 0.00 0.00 4.63
3880 9632 3.965539 CTTGGTCTGCTGCCTCGGG 62.966 68.421 0.00 0.00 0.00 5.14
4003 9782 3.004171 TCATTTGTTAACACGCGGCTAT 58.996 40.909 12.47 0.00 0.00 2.97
4005 9784 4.269123 TCATTTGTTAACACGCGGCTATAG 59.731 41.667 12.47 0.00 0.00 1.31
4006 9785 3.507103 TTGTTAACACGCGGCTATAGA 57.493 42.857 12.47 0.00 0.00 1.98
4007 9786 3.720949 TGTTAACACGCGGCTATAGAT 57.279 42.857 12.47 0.00 0.00 1.98
4009 9788 3.181484 TGTTAACACGCGGCTATAGATGT 60.181 43.478 12.47 0.00 0.00 3.06
4010 9789 2.596904 AACACGCGGCTATAGATGTT 57.403 45.000 12.47 6.33 0.00 2.71
4011 9790 1.852942 ACACGCGGCTATAGATGTTG 58.147 50.000 12.47 0.00 0.00 3.33
4012 9791 1.407618 ACACGCGGCTATAGATGTTGA 59.592 47.619 12.47 0.00 0.00 3.18
4014 9793 2.863740 CACGCGGCTATAGATGTTGAAA 59.136 45.455 12.47 0.00 0.00 2.69
4015 9794 2.864343 ACGCGGCTATAGATGTTGAAAC 59.136 45.455 12.47 0.00 0.00 2.78
4017 9796 3.182572 CGCGGCTATAGATGTTGAAACTC 59.817 47.826 3.21 0.00 0.00 3.01
4018 9797 4.372656 GCGGCTATAGATGTTGAAACTCT 58.627 43.478 3.21 0.00 0.00 3.24
4020 9799 5.352284 CGGCTATAGATGTTGAAACTCTGT 58.648 41.667 3.21 0.00 0.00 3.41
4021 9800 5.233050 CGGCTATAGATGTTGAAACTCTGTG 59.767 44.000 3.21 0.00 0.00 3.66
4022 9801 5.525378 GGCTATAGATGTTGAAACTCTGTGG 59.475 44.000 3.21 0.00 0.00 4.17
4023 9802 5.007136 GCTATAGATGTTGAAACTCTGTGGC 59.993 44.000 3.21 9.72 31.44 5.01
4024 9803 2.508526 AGATGTTGAAACTCTGTGGCC 58.491 47.619 0.00 0.00 0.00 5.36
4025 9804 2.158623 AGATGTTGAAACTCTGTGGCCA 60.159 45.455 0.00 0.00 0.00 5.36
4026 9805 1.679139 TGTTGAAACTCTGTGGCCAG 58.321 50.000 5.11 0.00 40.25 4.85
4027 9806 1.211703 TGTTGAAACTCTGTGGCCAGA 59.788 47.619 5.11 2.89 45.44 3.86
4029 9808 2.687935 GTTGAAACTCTGTGGCCAGAAA 59.312 45.455 5.11 0.00 46.79 2.52
4031 9810 3.149196 TGAAACTCTGTGGCCAGAAATC 58.851 45.455 5.11 0.00 46.79 2.17
4047 9826 7.378966 GCCAGAAATCAATCAATCATCATCAT 58.621 34.615 0.00 0.00 0.00 2.45
4070 9849 9.935241 TCATTATTTCTGTCATTATCCTAGCTC 57.065 33.333 0.00 0.00 0.00 4.09
4071 9850 9.160496 CATTATTTCTGTCATTATCCTAGCTCC 57.840 37.037 0.00 0.00 0.00 4.70
4073 9852 6.560003 TTTCTGTCATTATCCTAGCTCCAA 57.440 37.500 0.00 0.00 0.00 3.53
4076 9855 5.303078 TCTGTCATTATCCTAGCTCCAAGTC 59.697 44.000 0.00 0.00 0.00 3.01
4077 9856 5.211973 TGTCATTATCCTAGCTCCAAGTCT 58.788 41.667 0.00 0.00 0.00 3.24
4081 9860 7.666388 GTCATTATCCTAGCTCCAAGTCTACTA 59.334 40.741 0.00 0.00 0.00 1.82
4082 9861 7.885922 TCATTATCCTAGCTCCAAGTCTACTAG 59.114 40.741 0.00 0.00 0.00 2.57
4083 9862 3.822940 TCCTAGCTCCAAGTCTACTAGC 58.177 50.000 0.00 0.00 31.06 3.42
4084 9863 3.460340 TCCTAGCTCCAAGTCTACTAGCT 59.540 47.826 10.01 10.01 45.14 3.32
4085 9864 4.659368 TCCTAGCTCCAAGTCTACTAGCTA 59.341 45.833 10.96 10.96 43.09 3.32
4087 9866 3.219281 AGCTCCAAGTCTACTAGCTAGC 58.781 50.000 20.91 6.62 41.56 3.42
4088 9867 3.117663 AGCTCCAAGTCTACTAGCTAGCT 60.118 47.826 23.12 23.12 41.56 3.32
4090 9869 4.714632 CTCCAAGTCTACTAGCTAGCTCT 58.285 47.826 23.26 8.14 0.00 4.09
4092 9871 4.164413 TCCAAGTCTACTAGCTAGCTCTGA 59.836 45.833 23.26 12.21 0.00 3.27
4094 9873 4.764050 AGTCTACTAGCTAGCTCTGACA 57.236 45.455 23.26 1.52 0.00 3.58
4095 9874 4.703897 AGTCTACTAGCTAGCTCTGACAG 58.296 47.826 23.26 15.25 0.00 3.51
4096 9875 4.163458 AGTCTACTAGCTAGCTCTGACAGT 59.837 45.833 23.26 20.37 0.00 3.55
4098 9877 5.464389 GTCTACTAGCTAGCTCTGACAGTAC 59.536 48.000 23.26 10.71 0.00 2.73
4099 9878 4.223556 ACTAGCTAGCTCTGACAGTACA 57.776 45.455 23.26 0.00 0.00 2.90
4101 9880 5.010933 ACTAGCTAGCTCTGACAGTACAAA 58.989 41.667 23.26 0.00 0.00 2.83
4105 9884 4.150804 GCTAGCTCTGACAGTACAAAACAC 59.849 45.833 7.70 0.00 0.00 3.32
4106 9885 4.408182 AGCTCTGACAGTACAAAACACT 57.592 40.909 1.59 0.00 0.00 3.55
4121 9905 5.525378 ACAAAACACTAGTCTCTTGCTCTTG 59.475 40.000 0.00 0.00 0.00 3.02
4136 9920 2.164219 GCTCTTGGGCGATTTGATTTGA 59.836 45.455 0.00 0.00 0.00 2.69
4137 9921 3.181483 GCTCTTGGGCGATTTGATTTGAT 60.181 43.478 0.00 0.00 0.00 2.57
4140 9924 5.170021 TCTTGGGCGATTTGATTTGATTTG 58.830 37.500 0.00 0.00 0.00 2.32
4154 9938 6.374894 TGATTTGATTTGGGATTTGGATTTGC 59.625 34.615 0.00 0.00 0.00 3.68
4336 10130 1.747709 CCTGAAGAATGCCTGACCTG 58.252 55.000 0.00 0.00 0.00 4.00
4358 10152 4.263506 TGGTTTGGTTTGGTTTGGTTGATT 60.264 37.500 0.00 0.00 0.00 2.57
4359 10153 4.095632 GGTTTGGTTTGGTTTGGTTGATTG 59.904 41.667 0.00 0.00 0.00 2.67
4376 10194 5.963214 TGATTGGGAGAGATGAGATGAAA 57.037 39.130 0.00 0.00 0.00 2.69
4390 10208 6.430962 TGAGATGAAAGATATGGGAGGAAG 57.569 41.667 0.00 0.00 0.00 3.46
4393 10211 4.672587 TGAAAGATATGGGAGGAAGTCG 57.327 45.455 0.00 0.00 0.00 4.18
4395 10213 4.901849 TGAAAGATATGGGAGGAAGTCGAT 59.098 41.667 0.00 0.00 0.00 3.59
4396 10214 6.075315 TGAAAGATATGGGAGGAAGTCGATA 58.925 40.000 0.00 0.00 0.00 2.92
4398 10216 4.011023 AGATATGGGAGGAAGTCGATACG 58.989 47.826 0.00 0.00 0.00 3.06
4401 10219 1.212688 TGGGAGGAAGTCGATACGGTA 59.787 52.381 0.00 0.00 0.00 4.02
4402 10220 2.158564 TGGGAGGAAGTCGATACGGTAT 60.159 50.000 0.00 0.00 0.00 2.73
4403 10221 3.072915 TGGGAGGAAGTCGATACGGTATA 59.927 47.826 0.00 0.00 0.00 1.47
4404 10222 4.074970 GGGAGGAAGTCGATACGGTATAA 58.925 47.826 0.00 0.00 0.00 0.98
4406 10224 5.392811 GGGAGGAAGTCGATACGGTATAATG 60.393 48.000 0.00 0.00 0.00 1.90
4407 10225 5.392811 GGAGGAAGTCGATACGGTATAATGG 60.393 48.000 0.00 0.00 0.00 3.16
4408 10226 5.319453 AGGAAGTCGATACGGTATAATGGA 58.681 41.667 0.00 0.00 0.00 3.41
4409 10227 5.182760 AGGAAGTCGATACGGTATAATGGAC 59.817 44.000 0.00 6.78 32.76 4.02
4410 10228 5.048504 GGAAGTCGATACGGTATAATGGACA 60.049 44.000 16.52 0.00 34.41 4.02
4411 10229 5.624344 AGTCGATACGGTATAATGGACAG 57.376 43.478 16.52 0.00 34.41 3.51
4412 10230 5.068636 AGTCGATACGGTATAATGGACAGT 58.931 41.667 16.52 0.00 34.41 3.55
4413 10231 6.233434 AGTCGATACGGTATAATGGACAGTA 58.767 40.000 16.52 0.00 34.41 2.74
4414 10232 6.712095 AGTCGATACGGTATAATGGACAGTAA 59.288 38.462 16.52 0.00 34.41 2.24
4415 10233 7.392673 AGTCGATACGGTATAATGGACAGTAAT 59.607 37.037 16.52 1.88 34.41 1.89
4416 10234 7.484007 GTCGATACGGTATAATGGACAGTAATG 59.516 40.741 0.00 0.00 32.45 1.90
4417 10235 7.175467 TCGATACGGTATAATGGACAGTAATGT 59.825 37.037 0.00 0.00 32.45 2.71
4418 10236 8.453320 CGATACGGTATAATGGACAGTAATGTA 58.547 37.037 0.00 0.00 32.45 2.29
4422 10240 9.918630 ACGGTATAATGGACAGTAATGTAATAC 57.081 33.333 0.00 0.65 0.00 1.89
4450 10279 1.672881 ACAACAAACAGCTGAGTCTGC 59.327 47.619 23.35 13.72 37.59 4.26
4454 10283 0.179073 AAACAGCTGAGTCTGCGTGT 60.179 50.000 23.35 15.72 37.59 4.49
4486 10315 8.622948 AAAGTAAAACAGACAAATAGGGAGAG 57.377 34.615 0.00 0.00 0.00 3.20
4493 10322 7.020827 ACAGACAAATAGGGAGAGAATTTGA 57.979 36.000 12.51 0.00 41.14 2.69
4550 10389 5.083533 ACAAGAGAATTTTTGTTGGTGCA 57.916 34.783 2.56 0.00 34.00 4.57
4577 10416 1.007238 TATGCTCTCCCCTCCCCTCT 61.007 60.000 0.00 0.00 0.00 3.69
4598 10437 0.179936 CAATGAGAGGGACAGGGAGC 59.820 60.000 0.00 0.00 0.00 4.70
4617 10456 1.068472 GCGTCCTCCATACGGTATCTG 60.068 57.143 0.00 0.00 40.64 2.90
4649 10491 3.274095 ACTGCCTCCTTGCTTCTATTC 57.726 47.619 0.00 0.00 0.00 1.75
4655 11176 5.183904 TGCCTCCTTGCTTCTATTCTTTTTC 59.816 40.000 0.00 0.00 0.00 2.29
4656 11177 5.417266 GCCTCCTTGCTTCTATTCTTTTTCT 59.583 40.000 0.00 0.00 0.00 2.52
4657 11178 6.071672 GCCTCCTTGCTTCTATTCTTTTTCTT 60.072 38.462 0.00 0.00 0.00 2.52
4687 11208 0.544697 GCTCCCTCCGTCCCAAAATA 59.455 55.000 0.00 0.00 0.00 1.40
4689 11210 2.919228 CTCCCTCCGTCCCAAAATAAG 58.081 52.381 0.00 0.00 0.00 1.73
4690 11211 2.504175 CTCCCTCCGTCCCAAAATAAGA 59.496 50.000 0.00 0.00 0.00 2.10
4692 11213 2.238898 CCCTCCGTCCCAAAATAAGAGT 59.761 50.000 0.00 0.00 0.00 3.24
4693 11214 3.270877 CCTCCGTCCCAAAATAAGAGTG 58.729 50.000 0.00 0.00 0.00 3.51
4694 11215 3.307480 CCTCCGTCCCAAAATAAGAGTGT 60.307 47.826 0.00 0.00 0.00 3.55
4696 11217 4.824289 TCCGTCCCAAAATAAGAGTGTAC 58.176 43.478 0.00 0.00 0.00 2.90
4697 11218 4.529377 TCCGTCCCAAAATAAGAGTGTACT 59.471 41.667 0.00 0.00 0.00 2.73
4698 11219 5.716228 TCCGTCCCAAAATAAGAGTGTACTA 59.284 40.000 0.00 0.00 0.00 1.82
4699 11220 6.381994 TCCGTCCCAAAATAAGAGTGTACTAT 59.618 38.462 0.00 0.00 0.00 2.12
4700 11221 7.046033 CCGTCCCAAAATAAGAGTGTACTATT 58.954 38.462 0.00 0.00 0.00 1.73
4701 11222 7.551617 CCGTCCCAAAATAAGAGTGTACTATTT 59.448 37.037 0.00 0.00 0.00 1.40
4702 11223 9.590451 CGTCCCAAAATAAGAGTGTACTATTTA 57.410 33.333 0.00 0.00 0.00 1.40
4729 11326 4.327680 AGTACATTTTCAACTGGCTCCTC 58.672 43.478 0.00 0.00 0.00 3.71
4739 11336 1.610673 TGGCTCCTCACTCTCCCAC 60.611 63.158 0.00 0.00 0.00 4.61
4748 11345 3.181450 CCTCACTCTCCCACATTTATCCC 60.181 52.174 0.00 0.00 0.00 3.85
4753 11350 2.551912 CCCACATTTATCCCGGCGC 61.552 63.158 0.00 0.00 0.00 6.53
4771 11368 1.681666 CACAGTCCAGACCATGCCT 59.318 57.895 0.00 0.00 0.00 4.75
4791 11388 2.250190 GCCGAAAAACCGTGTCCG 59.750 61.111 0.00 0.00 0.00 4.79
4798 11395 0.531311 AAAACCGTGTCCGACCAGAC 60.531 55.000 0.00 0.00 37.28 3.51
4800 11397 4.065281 CCGTGTCCGACCAGACCC 62.065 72.222 0.00 0.00 35.83 4.46
4812 11409 0.178068 CCAGACCCCACATAACGAGG 59.822 60.000 0.00 0.00 0.00 4.63
4825 11423 1.508632 AACGAGGTCAAATGTCCACG 58.491 50.000 12.95 12.95 41.22 4.94
4844 11442 2.528127 TCTCCGGCACCCCTCAAA 60.528 61.111 0.00 0.00 0.00 2.69
4873 11471 0.250901 ATGTGGGGCGATTATGAGGC 60.251 55.000 0.00 0.00 0.00 4.70
4876 11474 2.426023 GGGCGATTATGAGGCGGT 59.574 61.111 0.00 0.00 0.00 5.68
4880 11502 0.320771 GCGATTATGAGGCGGTCCAT 60.321 55.000 0.00 0.00 33.74 3.41
4893 11515 2.611800 TCCATGCTGGACTGGCCT 60.612 61.111 3.32 0.00 42.67 5.19
4916 11538 2.776526 AGCCCCACACCACCTCAA 60.777 61.111 0.00 0.00 0.00 3.02
4917 11539 2.197324 GCCCCACACCACCTCAAA 59.803 61.111 0.00 0.00 0.00 2.69
4940 11562 0.684805 AACCCTAGGCCTCACTCTCG 60.685 60.000 9.68 0.00 0.00 4.04
4947 11569 1.138671 GCCTCACTCTCGACTGCTC 59.861 63.158 0.00 0.00 0.00 4.26
4955 11577 1.153862 CTCGACTGCTCTGCTCCAC 60.154 63.158 0.00 0.00 0.00 4.02
4963 11585 0.392327 GCTCTGCTCCACTCCCTTTC 60.392 60.000 0.00 0.00 0.00 2.62
4964 11586 0.251634 CTCTGCTCCACTCCCTTTCC 59.748 60.000 0.00 0.00 0.00 3.13
4965 11587 0.473694 TCTGCTCCACTCCCTTTCCA 60.474 55.000 0.00 0.00 0.00 3.53
4966 11588 0.622665 CTGCTCCACTCCCTTTCCAT 59.377 55.000 0.00 0.00 0.00 3.41
4967 11589 1.839994 CTGCTCCACTCCCTTTCCATA 59.160 52.381 0.00 0.00 0.00 2.74
4968 11590 2.441001 CTGCTCCACTCCCTTTCCATAT 59.559 50.000 0.00 0.00 0.00 1.78
4969 11591 2.852449 TGCTCCACTCCCTTTCCATATT 59.148 45.455 0.00 0.00 0.00 1.28
4970 11592 3.217626 GCTCCACTCCCTTTCCATATTG 58.782 50.000 0.00 0.00 0.00 1.90
4971 11593 3.372025 GCTCCACTCCCTTTCCATATTGT 60.372 47.826 0.00 0.00 0.00 2.71
4972 11594 4.455606 CTCCACTCCCTTTCCATATTGTC 58.544 47.826 0.00 0.00 0.00 3.18
4973 11595 3.202151 TCCACTCCCTTTCCATATTGTCC 59.798 47.826 0.00 0.00 0.00 4.02
4974 11596 3.203040 CCACTCCCTTTCCATATTGTCCT 59.797 47.826 0.00 0.00 0.00 3.85
4975 11597 4.455606 CACTCCCTTTCCATATTGTCCTC 58.544 47.826 0.00 0.00 0.00 3.71
4976 11598 4.164988 CACTCCCTTTCCATATTGTCCTCT 59.835 45.833 0.00 0.00 0.00 3.69
4977 11599 4.410555 ACTCCCTTTCCATATTGTCCTCTC 59.589 45.833 0.00 0.00 0.00 3.20
4983 11605 4.286813 TCCATATTGTCCTCTCCCTTCT 57.713 45.455 0.00 0.00 0.00 2.85
4985 11607 3.326297 CCATATTGTCCTCTCCCTTCTCC 59.674 52.174 0.00 0.00 0.00 3.71
4993 11615 2.042843 TCCCTTCTCCTCCGCTCC 60.043 66.667 0.00 0.00 0.00 4.70
4994 11616 2.364317 CCCTTCTCCTCCGCTCCA 60.364 66.667 0.00 0.00 0.00 3.86
4995 11617 2.726351 CCCTTCTCCTCCGCTCCAC 61.726 68.421 0.00 0.00 0.00 4.02
4996 11618 2.726351 CCTTCTCCTCCGCTCCACC 61.726 68.421 0.00 0.00 0.00 4.61
4997 11619 1.984570 CTTCTCCTCCGCTCCACCA 60.985 63.158 0.00 0.00 0.00 4.17
4998 11620 1.306141 TTCTCCTCCGCTCCACCAT 60.306 57.895 0.00 0.00 0.00 3.55
4999 11621 1.617018 TTCTCCTCCGCTCCACCATG 61.617 60.000 0.00 0.00 0.00 3.66
5000 11622 3.083349 TCCTCCGCTCCACCATGG 61.083 66.667 11.19 11.19 39.43 3.66
5001 11623 4.864334 CCTCCGCTCCACCATGGC 62.864 72.222 13.04 0.00 37.47 4.40
5002 11624 4.864334 CTCCGCTCCACCATGGCC 62.864 72.222 13.04 0.00 37.47 5.36
5007 11629 4.864334 CTCCACCATGGCCGGCTC 62.864 72.222 28.56 17.27 37.47 4.70
5022 11644 4.237445 CTCAGGCAGCAGATTGGG 57.763 61.111 0.00 0.00 0.00 4.12
5023 11645 1.605992 CTCAGGCAGCAGATTGGGA 59.394 57.895 0.00 0.00 0.00 4.37
5024 11646 0.464013 CTCAGGCAGCAGATTGGGAG 60.464 60.000 0.00 0.00 0.00 4.30
5025 11647 1.203441 TCAGGCAGCAGATTGGGAGT 61.203 55.000 0.00 0.00 0.00 3.85
5026 11648 0.747283 CAGGCAGCAGATTGGGAGTC 60.747 60.000 0.00 0.00 0.00 3.36
5027 11649 1.452833 GGCAGCAGATTGGGAGTCC 60.453 63.158 0.00 0.00 0.00 3.85
5028 11650 1.300963 GCAGCAGATTGGGAGTCCA 59.699 57.895 12.30 0.00 42.25 4.02
5037 11659 1.452801 TGGGAGTCCAAAACCGACC 59.547 57.895 12.30 0.00 40.73 4.79
5038 11660 1.303074 GGGAGTCCAAAACCGACCC 60.303 63.158 12.30 0.00 32.00 4.46
5039 11661 1.452801 GGAGTCCAAAACCGACCCA 59.547 57.895 3.60 0.00 0.00 4.51
5040 11662 0.179012 GGAGTCCAAAACCGACCCAA 60.179 55.000 3.60 0.00 0.00 4.12
5041 11663 1.546998 GGAGTCCAAAACCGACCCAAT 60.547 52.381 3.60 0.00 0.00 3.16
5042 11664 2.235891 GAGTCCAAAACCGACCCAATT 58.764 47.619 0.00 0.00 0.00 2.32
5045 11667 2.560981 GTCCAAAACCGACCCAATTGAT 59.439 45.455 7.12 0.00 0.00 2.57
5053 11675 2.754552 CCGACCCAATTGATTGTGATGT 59.245 45.455 7.12 0.00 36.06 3.06
5055 11677 3.427909 CGACCCAATTGATTGTGATGTGG 60.428 47.826 7.12 0.00 36.06 4.17
5057 11679 3.903090 ACCCAATTGATTGTGATGTGGTT 59.097 39.130 7.12 0.00 36.06 3.67
5060 11682 4.561938 CCAATTGATTGTGATGTGGTTGCT 60.562 41.667 7.12 0.00 36.06 3.91
5062 11684 1.270274 TGATTGTGATGTGGTTGCTGC 59.730 47.619 0.00 0.00 0.00 5.25
5074 11696 0.737715 GTTGCTGCGGAGTCTTCGAT 60.738 55.000 4.21 0.00 0.00 3.59
5075 11697 0.458543 TTGCTGCGGAGTCTTCGATC 60.459 55.000 4.21 0.00 0.00 3.69
5077 11699 0.869454 GCTGCGGAGTCTTCGATCTG 60.869 60.000 4.21 0.00 0.00 2.90
5078 11700 0.453793 CTGCGGAGTCTTCGATCTGT 59.546 55.000 4.21 0.00 0.00 3.41
5081 11703 1.402984 GCGGAGTCTTCGATCTGTGTT 60.403 52.381 4.21 0.00 0.00 3.32
5089 11711 0.955905 TCGATCTGTGTTGTCCGACA 59.044 50.000 0.00 0.00 0.00 4.35
5112 11734 4.637489 CTCGCCCTCCATCGCTCG 62.637 72.222 0.00 0.00 0.00 5.03
5123 11745 3.583276 ATCGCTCGCGGTTGGACAA 62.583 57.895 6.13 0.00 40.25 3.18
5148 11770 3.775065 CTCTTCGAGCTTCACGTCA 57.225 52.632 0.00 0.00 0.00 4.35
5150 11772 1.916651 CTCTTCGAGCTTCACGTCATG 59.083 52.381 0.00 0.00 0.00 3.07
5210 11832 2.415010 CTCCGAGCCATCACCGAG 59.585 66.667 0.00 0.00 0.00 4.63
5218 11840 1.676968 CCATCACCGAGTGGACCAA 59.323 57.895 0.00 0.00 37.72 3.67
5232 11854 1.565156 GACCAACGTCGCTCATGCAA 61.565 55.000 0.00 0.00 39.64 4.08
5237 11859 1.057822 CGTCGCTCATGCAACTTCG 59.942 57.895 0.00 0.00 39.64 3.79
5246 11868 0.531974 ATGCAACTTCGGTGTGTCGT 60.532 50.000 0.00 0.00 0.00 4.34
5248 11870 0.874607 GCAACTTCGGTGTGTCGTCT 60.875 55.000 0.00 0.00 0.00 4.18
5250 11872 1.521423 CAACTTCGGTGTGTCGTCTTC 59.479 52.381 0.00 0.00 0.00 2.87
5260 11882 0.885879 TGTCGTCTTCGGCATGTACT 59.114 50.000 0.00 0.00 46.84 2.73
5262 11884 0.454600 TCGTCTTCGGCATGTACTCC 59.545 55.000 0.00 0.00 37.69 3.85
5263 11885 0.527817 CGTCTTCGGCATGTACTCCC 60.528 60.000 0.00 0.00 0.00 4.30
5264 11886 0.535335 GTCTTCGGCATGTACTCCCA 59.465 55.000 0.00 0.00 0.00 4.37
5279 11901 2.049248 CCATGCACCGTTGGTTGC 60.049 61.111 0.00 4.22 31.02 4.17
5288 11910 1.082756 CGTTGGTTGCTCTTGTCGC 60.083 57.895 0.00 0.00 0.00 5.19
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
89 90 2.525629 TCTTCGTGCCTGACCCCA 60.526 61.111 0.00 0.00 0.00 4.96
100 101 1.133407 GCTCTCCAAGATCGTCTTCGT 59.867 52.381 0.00 0.00 33.78 3.85
153 154 4.814294 GTCACCGCCGCCGAGATT 62.814 66.667 0.00 0.00 36.29 2.40
272 273 1.289380 GGCTCCTTCGAGTTCACGT 59.711 57.895 0.00 0.00 38.49 4.49
304 305 4.660938 GTCCTGCCCCAACGCCTT 62.661 66.667 0.00 0.00 0.00 4.35
566 572 4.790962 CTCCGCAGCCAGCCATGT 62.791 66.667 0.00 0.00 41.38 3.21
577 583 1.045350 CAGGAATCCTCTCCTCCGCA 61.045 60.000 0.00 0.00 44.46 5.69
587 593 3.075134 ACAGAAAAAGAGGCAGGAATCCT 59.925 43.478 0.00 0.00 36.46 3.24
628 635 0.331616 GTGAAACCCTAGGCCCACAT 59.668 55.000 2.05 0.00 0.00 3.21
680 687 5.588648 GGTGATTTTGGGAAAGTATCGATCA 59.411 40.000 0.00 0.00 0.00 2.92
681 688 5.823045 AGGTGATTTTGGGAAAGTATCGATC 59.177 40.000 0.00 0.00 0.00 3.69
693 1159 5.658190 AGTTAATCCATGAGGTGATTTTGGG 59.342 40.000 0.00 0.00 35.89 4.12
769 1235 8.336080 GGTAAGATTTGACTTGATTTCCGTATC 58.664 37.037 0.00 0.00 0.00 2.24
783 1249 5.992217 AGGAGCGAATATGGTAAGATTTGAC 59.008 40.000 0.00 0.00 0.00 3.18
866 1468 4.103943 AGTCTCTTCCCTTTCTCTTTTGCT 59.896 41.667 0.00 0.00 0.00 3.91
873 1475 1.065782 GGGCAGTCTCTTCCCTTTCTC 60.066 57.143 0.00 0.00 37.08 2.87
876 1478 1.679898 CGGGCAGTCTCTTCCCTTT 59.320 57.895 3.35 0.00 37.89 3.11
878 1480 3.394836 GCGGGCAGTCTCTTCCCT 61.395 66.667 3.35 0.00 37.89 4.20
879 1481 4.475135 GGCGGGCAGTCTCTTCCC 62.475 72.222 0.00 0.00 36.68 3.97
971 1588 4.783764 TCTCTTCTAGTCAAATCACGCA 57.216 40.909 0.00 0.00 0.00 5.24
1121 1769 1.618447 GAGGGGCAAAGGAGGGGTA 60.618 63.158 0.00 0.00 0.00 3.69
1126 1775 2.684499 GGAGGGAGGGGCAAAGGAG 61.684 68.421 0.00 0.00 0.00 3.69
1164 1843 3.795638 GGGAACCGATTCAGCGAC 58.204 61.111 0.00 0.00 40.86 5.19
1329 2008 1.890979 CATCACCTCCATGCTCGCC 60.891 63.158 0.00 0.00 0.00 5.54
1336 2015 0.326904 TCCAGCTCCATCACCTCCAT 60.327 55.000 0.00 0.00 0.00 3.41
1410 2089 0.904865 TGAGGATGTTGAGCGGGAGT 60.905 55.000 0.00 0.00 0.00 3.85
1452 4167 3.910627 ACCTGAACCTGAACCTGAACTAT 59.089 43.478 0.00 0.00 0.00 2.12
1454 4169 2.127708 ACCTGAACCTGAACCTGAACT 58.872 47.619 0.00 0.00 0.00 3.01
1522 5325 2.945668 GCTCTCTGAATTTAATGGCCGT 59.054 45.455 0.00 0.00 0.00 5.68
1560 5363 5.788450 ACTGACAGAAACCTACTCATGAAG 58.212 41.667 10.08 0.00 0.00 3.02
1561 5364 5.808366 ACTGACAGAAACCTACTCATGAA 57.192 39.130 10.08 0.00 0.00 2.57
1562 5365 5.808366 AACTGACAGAAACCTACTCATGA 57.192 39.130 10.08 0.00 0.00 3.07
1563 5366 5.180117 CCAAACTGACAGAAACCTACTCATG 59.820 44.000 10.08 0.00 0.00 3.07
1564 5367 5.308825 CCAAACTGACAGAAACCTACTCAT 58.691 41.667 10.08 0.00 0.00 2.90
1566 5369 3.498777 GCCAAACTGACAGAAACCTACTC 59.501 47.826 10.08 0.00 0.00 2.59
1567 5370 3.136626 AGCCAAACTGACAGAAACCTACT 59.863 43.478 10.08 0.00 0.00 2.57
1568 5371 3.477530 AGCCAAACTGACAGAAACCTAC 58.522 45.455 10.08 0.00 0.00 3.18
1569 5372 3.857157 AGCCAAACTGACAGAAACCTA 57.143 42.857 10.08 0.00 0.00 3.08
1578 5381 6.997904 ACTATCAAGTTGCAGCCAAACTGAC 61.998 44.000 0.00 0.00 40.16 3.51
1624 5442 2.290641 CCCAGAAATTAAATCGGCTCGG 59.709 50.000 0.00 0.00 0.00 4.63
1625 5443 2.943033 ACCCAGAAATTAAATCGGCTCG 59.057 45.455 0.00 0.00 0.00 5.03
1647 5465 2.750815 CGGAGCCGGTACAAAAGAG 58.249 57.895 1.90 0.00 35.56 2.85
1660 5478 4.729277 ACATGTTATGGTTCAAGCGGAGC 61.729 47.826 0.00 0.00 45.78 4.70
1661 5479 3.009723 ACATGTTATGGTTCAAGCGGAG 58.990 45.455 0.00 0.00 33.60 4.63
1664 5482 5.447279 GGACTAACATGTTATGGTTCAAGCG 60.447 44.000 18.35 5.80 33.60 4.68
1665 5483 5.447279 CGGACTAACATGTTATGGTTCAAGC 60.447 44.000 18.35 2.75 33.60 4.01
1670 5488 5.416271 ACTCGGACTAACATGTTATGGTT 57.584 39.130 18.35 4.11 33.60 3.67
1673 5495 7.224753 AGCATTTACTCGGACTAACATGTTATG 59.775 37.037 18.35 14.19 0.00 1.90
1684 5506 0.530744 TCGCAGCATTTACTCGGACT 59.469 50.000 0.00 0.00 0.00 3.85
1687 5509 2.120232 CTAGTCGCAGCATTTACTCGG 58.880 52.381 0.00 0.00 0.00 4.63
1688 5510 2.798680 ACTAGTCGCAGCATTTACTCG 58.201 47.619 0.00 0.00 0.00 4.18
1702 5537 4.338682 CCACCCTACACTGATGTACTAGTC 59.661 50.000 0.00 0.00 40.48 2.59
1875 5745 3.550437 ATCCAGGTCACTAGCAATGTC 57.450 47.619 0.00 0.00 0.00 3.06
1879 5749 4.093743 TCTTGTATCCAGGTCACTAGCAA 58.906 43.478 0.00 0.00 0.00 3.91
1951 5830 3.527665 ACCAGTAAGTATTCAGGGCCAAT 59.472 43.478 6.18 0.00 0.00 3.16
1955 5839 3.951663 ACAACCAGTAAGTATTCAGGGC 58.048 45.455 0.00 0.00 0.00 5.19
1956 5840 5.189145 AGGTACAACCAGTAAGTATTCAGGG 59.811 44.000 0.00 0.00 41.95 4.45
2048 6005 2.698855 AATCAGGGAACACGATGAGG 57.301 50.000 0.00 0.00 0.00 3.86
2185 6160 3.328382 TGGGAGTTGAGTTGGTAATCG 57.672 47.619 0.00 0.00 0.00 3.34
2373 6452 2.349886 GCAGCAGTACTACAGCAATGTC 59.650 50.000 5.66 0.00 32.62 3.06
2416 6495 9.681692 GAATTGGCAGCAATTTTCTTTTTAATT 57.318 25.926 0.00 0.00 35.18 1.40
2417 6496 9.070179 AGAATTGGCAGCAATTTTCTTTTTAAT 57.930 25.926 0.00 0.00 35.18 1.40
2418 6497 8.449251 AGAATTGGCAGCAATTTTCTTTTTAA 57.551 26.923 0.00 0.00 35.18 1.52
2420 6499 6.947644 AGAATTGGCAGCAATTTTCTTTTT 57.052 29.167 0.00 0.00 35.18 1.94
2421 6500 7.444299 TCTAGAATTGGCAGCAATTTTCTTTT 58.556 30.769 0.00 0.00 35.18 2.27
2425 6504 4.802563 GCTCTAGAATTGGCAGCAATTTTC 59.197 41.667 0.00 0.00 35.18 2.29
2441 6520 2.771089 CAGGTTTTGCACTGCTCTAGA 58.229 47.619 1.98 0.00 0.00 2.43
2468 6547 4.499183 AGCTTGTAACTGTCTGCTGATAC 58.501 43.478 0.00 0.00 0.00 2.24
2470 6549 3.692257 AGCTTGTAACTGTCTGCTGAT 57.308 42.857 0.00 0.00 0.00 2.90
2484 6563 8.870075 AGGAGAAATAGAAATTACAAGCTTGT 57.130 30.769 32.97 32.97 44.86 3.16
2524 6611 4.863491 TGACAGTTAGGTGACGTAGAAAC 58.137 43.478 0.00 0.00 0.00 2.78
2570 6657 9.770097 CCTGAATATTATGACATGACAGTTAGT 57.230 33.333 0.00 0.00 0.00 2.24
2571 6658 9.212641 CCCTGAATATTATGACATGACAGTTAG 57.787 37.037 0.00 0.00 0.00 2.34
2572 6659 7.661437 GCCCTGAATATTATGACATGACAGTTA 59.339 37.037 0.00 0.00 0.00 2.24
2573 6660 6.488006 GCCCTGAATATTATGACATGACAGTT 59.512 38.462 0.00 0.00 0.00 3.16
2574 6661 6.000219 GCCCTGAATATTATGACATGACAGT 59.000 40.000 0.00 0.00 0.00 3.55
2575 6662 5.999600 TGCCCTGAATATTATGACATGACAG 59.000 40.000 0.00 0.00 0.00 3.51
2576 6663 5.939447 TGCCCTGAATATTATGACATGACA 58.061 37.500 0.00 0.00 0.00 3.58
2577 6664 7.458409 AATGCCCTGAATATTATGACATGAC 57.542 36.000 0.00 0.00 0.00 3.06
2606 6693 2.740981 CTCCAGCAGAAGATGTGTCAAC 59.259 50.000 0.00 0.00 0.00 3.18
2803 6952 2.808543 AGTGATTCTCGTTTGCCTTGAC 59.191 45.455 0.00 0.00 0.00 3.18
2819 6970 3.491447 GCAAGGTTGAAACAGCAAGTGAT 60.491 43.478 0.00 0.00 0.00 3.06
2872 7023 2.256461 GCAAGCTTTGACTGCCCG 59.744 61.111 0.00 0.00 0.00 6.13
2944 7095 3.976169 GCCACAAGCACACAATCTAAAA 58.024 40.909 0.00 0.00 42.97 1.52
3070 7250 5.048713 CCAGAAAGTGGTGTGATTTCTAACC 60.049 44.000 0.00 0.00 40.40 2.85
3094 7283 4.686839 ACCGCTCAGCTTTCTTTTATTC 57.313 40.909 0.00 0.00 0.00 1.75
3146 7345 5.656416 ACAATTTCAGACCCAGAGAAACAAA 59.344 36.000 0.00 0.00 34.47 2.83
3148 7347 4.580167 CACAATTTCAGACCCAGAGAAACA 59.420 41.667 0.00 0.00 34.47 2.83
3149 7348 4.022849 CCACAATTTCAGACCCAGAGAAAC 60.023 45.833 0.00 0.00 34.47 2.78
3153 7352 2.040278 TCCCACAATTTCAGACCCAGAG 59.960 50.000 0.00 0.00 0.00 3.35
3171 7370 3.563390 GCAGATAAGCAGATTGTTCTCCC 59.437 47.826 0.00 0.00 0.00 4.30
3265 8413 0.031178 GTGCTTGGGCTCAACACAAG 59.969 55.000 20.32 3.31 43.28 3.16
3301 8449 7.393515 ACCCTCTTCCTGTTATCAACAAAATAC 59.606 37.037 0.00 0.00 41.61 1.89
3417 8573 9.202273 CCATTTCTGCTGAGTAGAGTATATTTC 57.798 37.037 0.00 0.00 0.00 2.17
3418 8574 8.928448 TCCATTTCTGCTGAGTAGAGTATATTT 58.072 33.333 0.00 0.00 0.00 1.40
3419 8575 8.484214 TCCATTTCTGCTGAGTAGAGTATATT 57.516 34.615 0.00 0.00 0.00 1.28
3460 8989 5.523916 CCATGAAATCAGTCGTTAGTTAGGG 59.476 44.000 0.00 0.00 0.00 3.53
3462 8991 5.523916 CCCCATGAAATCAGTCGTTAGTTAG 59.476 44.000 0.00 0.00 0.00 2.34
3465 8994 3.370527 CCCCCATGAAATCAGTCGTTAGT 60.371 47.826 0.00 0.00 0.00 2.24
3485 9014 0.627451 ATACGGGAAGGAAAACCCCC 59.373 55.000 0.00 0.00 42.86 5.40
3487 9016 2.640184 CAGATACGGGAAGGAAAACCC 58.360 52.381 0.00 0.00 42.43 4.11
3575 9105 2.346847 GCTGTCAAGATTGAGCGTACTG 59.653 50.000 0.00 0.00 37.98 2.74
3580 9110 0.725686 CCTGCTGTCAAGATTGAGCG 59.274 55.000 0.00 0.00 37.98 5.03
3582 9112 1.093159 GCCCTGCTGTCAAGATTGAG 58.907 55.000 0.00 0.00 37.98 3.02
3586 9117 0.323178 CAAGGCCCTGCTGTCAAGAT 60.323 55.000 0.00 0.00 0.00 2.40
3591 9122 1.968540 GACACAAGGCCCTGCTGTC 60.969 63.158 16.29 16.29 0.00 3.51
3592 9123 2.113986 GACACAAGGCCCTGCTGT 59.886 61.111 0.00 5.31 0.00 4.40
3593 9124 2.674380 GGACACAAGGCCCTGCTG 60.674 66.667 0.00 1.94 0.00 4.41
3594 9125 2.085343 AATGGACACAAGGCCCTGCT 62.085 55.000 0.00 0.00 0.00 4.24
3619 9268 5.457487 CCATGGAGCCCCTGTTGTTATATAA 60.457 44.000 5.56 0.00 0.00 0.98
3623 9272 1.063717 CCATGGAGCCCCTGTTGTTAT 60.064 52.381 5.56 0.00 0.00 1.89
3624 9273 0.331278 CCATGGAGCCCCTGTTGTTA 59.669 55.000 5.56 0.00 0.00 2.41
3659 9308 6.220930 GGAATGCTACACCTATCGTTTGATA 58.779 40.000 0.00 0.00 35.99 2.15
3661 9310 4.439057 GGAATGCTACACCTATCGTTTGA 58.561 43.478 0.00 0.00 0.00 2.69
3662 9311 3.245284 CGGAATGCTACACCTATCGTTTG 59.755 47.826 0.00 0.00 0.00 2.93
3666 9315 1.419374 GCGGAATGCTACACCTATCG 58.581 55.000 0.00 0.00 41.73 2.92
3667 9316 1.269621 ACGCGGAATGCTACACCTATC 60.270 52.381 12.47 0.00 43.27 2.08
3669 9318 0.533491 AACGCGGAATGCTACACCTA 59.467 50.000 12.47 0.00 43.27 3.08
3685 9350 9.616216 CCATCACATGGCCACGTTATTATAACG 62.616 44.444 28.72 28.72 44.70 3.18
3703 9368 1.554617 TGTGACGACATCCCATCACAT 59.445 47.619 1.91 0.00 44.88 3.21
3707 9372 1.331756 GCAATGTGACGACATCCCATC 59.668 52.381 0.00 0.00 42.30 3.51
3708 9373 1.382522 GCAATGTGACGACATCCCAT 58.617 50.000 0.00 0.00 42.30 4.00
3711 9376 0.370273 GACGCAATGTGACGACATCC 59.630 55.000 0.00 0.00 42.30 3.51
3713 9378 0.388006 TCGACGCAATGTGACGACAT 60.388 50.000 16.16 0.00 45.24 3.06
3717 9382 0.023732 GTCATCGACGCAATGTGACG 59.976 55.000 11.94 11.94 31.15 4.35
3740 9406 3.359033 CCATTTCCCAGATCAAGCTCAA 58.641 45.455 0.00 0.00 0.00 3.02
3749 9415 2.224621 CGTCCTATGCCATTTCCCAGAT 60.225 50.000 0.00 0.00 0.00 2.90
3775 9480 5.665459 AGTAATACTCCACAACTGCAGATC 58.335 41.667 23.35 0.00 0.00 2.75
3779 9484 5.715279 AGACTAGTAATACTCCACAACTGCA 59.285 40.000 0.00 0.00 0.00 4.41
3786 9491 7.838884 AGGACAAAAGACTAGTAATACTCCAC 58.161 38.462 0.00 0.00 0.00 4.02
3829 9581 1.400737 CGGTGAGGTCCCTAGTAAGG 58.599 60.000 0.00 0.00 43.25 2.69
3830 9582 1.400737 CCGGTGAGGTCCCTAGTAAG 58.599 60.000 0.00 0.00 34.51 2.34
3831 9583 0.685458 GCCGGTGAGGTCCCTAGTAA 60.685 60.000 1.90 0.00 43.70 2.24
3848 9600 2.333938 CAAGTGCAGTGCAGTGCC 59.666 61.111 36.86 28.27 41.77 5.01
3879 9631 4.473559 TCAAGTATATATTAGGGGCCTGCC 59.526 45.833 0.84 0.00 0.00 4.85
3880 9632 5.693769 TCAAGTATATATTAGGGGCCTGC 57.306 43.478 0.84 0.00 0.00 4.85
3881 9633 7.496346 TCTTCAAGTATATATTAGGGGCCTG 57.504 40.000 0.84 0.00 0.00 4.85
3883 9635 7.862675 ACATCTTCAAGTATATATTAGGGGCC 58.137 38.462 0.00 0.00 0.00 5.80
3884 9636 9.819267 GTACATCTTCAAGTATATATTAGGGGC 57.181 37.037 0.00 0.00 0.00 5.80
3942 9706 8.723365 AGATCTGGATCTCTTCTACTTCTCTAA 58.277 37.037 7.23 0.00 44.37 2.10
4003 9782 3.072330 TGGCCACAGAGTTTCAACATCTA 59.928 43.478 0.00 0.00 0.00 1.98
4005 9784 2.229792 TGGCCACAGAGTTTCAACATC 58.770 47.619 0.00 0.00 0.00 3.06
4006 9785 2.363306 TGGCCACAGAGTTTCAACAT 57.637 45.000 0.00 0.00 0.00 2.71
4007 9786 3.892633 TGGCCACAGAGTTTCAACA 57.107 47.368 0.00 0.00 0.00 3.33
4017 9796 4.158949 TGATTGATTGATTTCTGGCCACAG 59.841 41.667 0.00 0.00 46.30 3.66
4018 9797 4.087907 TGATTGATTGATTTCTGGCCACA 58.912 39.130 0.00 0.00 0.00 4.17
4020 9799 4.957327 TGATGATTGATTGATTTCTGGCCA 59.043 37.500 4.71 4.71 0.00 5.36
4021 9800 5.524971 TGATGATTGATTGATTTCTGGCC 57.475 39.130 0.00 0.00 0.00 5.36
4022 9801 6.745116 TGATGATGATTGATTGATTTCTGGC 58.255 36.000 0.00 0.00 0.00 4.85
4047 9826 8.262601 TGGAGCTAGGATAATGACAGAAATAA 57.737 34.615 0.00 0.00 0.00 1.40
4049 9828 6.753913 TGGAGCTAGGATAATGACAGAAAT 57.246 37.500 0.00 0.00 0.00 2.17
4051 9830 5.663106 ACTTGGAGCTAGGATAATGACAGAA 59.337 40.000 0.00 0.00 0.00 3.02
4053 9832 5.304101 AGACTTGGAGCTAGGATAATGACAG 59.696 44.000 0.00 0.00 0.00 3.51
4054 9833 5.211973 AGACTTGGAGCTAGGATAATGACA 58.788 41.667 0.00 0.00 0.00 3.58
4055 9834 5.799827 AGACTTGGAGCTAGGATAATGAC 57.200 43.478 0.00 0.00 0.00 3.06
4057 9836 6.909550 AGTAGACTTGGAGCTAGGATAATG 57.090 41.667 0.00 0.00 0.00 1.90
4058 9837 6.661805 GCTAGTAGACTTGGAGCTAGGATAAT 59.338 42.308 0.00 0.00 32.22 1.28
4059 9838 6.005198 GCTAGTAGACTTGGAGCTAGGATAA 58.995 44.000 0.00 0.00 32.22 1.75
4060 9839 5.311121 AGCTAGTAGACTTGGAGCTAGGATA 59.689 44.000 0.00 0.00 41.60 2.59
4063 9842 3.827722 AGCTAGTAGACTTGGAGCTAGG 58.172 50.000 0.00 0.00 41.60 3.02
4067 9846 3.219281 AGCTAGCTAGTAGACTTGGAGC 58.781 50.000 17.69 5.62 0.00 4.70
4069 9848 4.164413 TCAGAGCTAGCTAGTAGACTTGGA 59.836 45.833 19.38 8.91 0.00 3.53
4070 9849 4.274950 GTCAGAGCTAGCTAGTAGACTTGG 59.725 50.000 19.38 7.01 0.00 3.61
4071 9850 4.878971 TGTCAGAGCTAGCTAGTAGACTTG 59.121 45.833 19.38 11.63 0.00 3.16
4073 9852 4.163458 ACTGTCAGAGCTAGCTAGTAGACT 59.837 45.833 19.38 6.37 0.00 3.24
4076 9855 5.361427 TGTACTGTCAGAGCTAGCTAGTAG 58.639 45.833 19.38 16.62 0.00 2.57
4077 9856 5.354842 TGTACTGTCAGAGCTAGCTAGTA 57.645 43.478 19.38 17.79 0.00 1.82
4081 9860 4.039245 TGTTTTGTACTGTCAGAGCTAGCT 59.961 41.667 19.45 19.45 0.00 3.32
4082 9861 4.150804 GTGTTTTGTACTGTCAGAGCTAGC 59.849 45.833 6.62 6.62 0.00 3.42
4083 9862 5.533482 AGTGTTTTGTACTGTCAGAGCTAG 58.467 41.667 6.91 0.00 0.00 3.42
4084 9863 5.531122 AGTGTTTTGTACTGTCAGAGCTA 57.469 39.130 6.91 0.00 0.00 3.32
4085 9864 4.408182 AGTGTTTTGTACTGTCAGAGCT 57.592 40.909 6.91 0.00 0.00 4.09
4086 9865 5.290386 ACTAGTGTTTTGTACTGTCAGAGC 58.710 41.667 6.91 0.00 0.00 4.09
4087 9866 6.740110 AGACTAGTGTTTTGTACTGTCAGAG 58.260 40.000 6.91 0.00 33.05 3.35
4088 9867 6.546403 AGAGACTAGTGTTTTGTACTGTCAGA 59.454 38.462 6.91 0.00 33.05 3.27
4090 9869 6.710597 AGAGACTAGTGTTTTGTACTGTCA 57.289 37.500 0.00 0.00 33.05 3.58
4092 9871 5.753921 GCAAGAGACTAGTGTTTTGTACTGT 59.246 40.000 20.15 0.00 0.00 3.55
4094 9873 6.041069 AGAGCAAGAGACTAGTGTTTTGTACT 59.959 38.462 20.15 16.56 0.00 2.73
4095 9874 6.217294 AGAGCAAGAGACTAGTGTTTTGTAC 58.783 40.000 20.15 15.10 0.00 2.90
4096 9875 6.406692 AGAGCAAGAGACTAGTGTTTTGTA 57.593 37.500 20.15 0.00 0.00 2.41
4098 9877 5.049818 CCAAGAGCAAGAGACTAGTGTTTTG 60.050 44.000 16.40 16.40 0.00 2.44
4099 9878 5.059833 CCAAGAGCAAGAGACTAGTGTTTT 58.940 41.667 0.00 0.00 0.00 2.43
4101 9880 3.007398 CCCAAGAGCAAGAGACTAGTGTT 59.993 47.826 0.00 0.00 0.00 3.32
4105 9884 1.470632 CGCCCAAGAGCAAGAGACTAG 60.471 57.143 0.00 0.00 0.00 2.57
4106 9885 0.532573 CGCCCAAGAGCAAGAGACTA 59.467 55.000 0.00 0.00 0.00 2.59
4121 9905 3.118811 TCCCAAATCAAATCAAATCGCCC 60.119 43.478 0.00 0.00 0.00 6.13
4136 9920 6.358991 CCTATTGCAAATCCAAATCCCAAAT 58.641 36.000 1.71 0.00 0.00 2.32
4137 9921 5.339035 CCCTATTGCAAATCCAAATCCCAAA 60.339 40.000 1.71 0.00 0.00 3.28
4140 9924 3.071457 CCCCTATTGCAAATCCAAATCCC 59.929 47.826 1.71 0.00 0.00 3.85
4154 9938 2.588877 CGTCGCAGCCCCCTATTG 60.589 66.667 0.00 0.00 0.00 1.90
4336 10130 3.336138 TCAACCAAACCAAACCAAACC 57.664 42.857 0.00 0.00 0.00 3.27
4358 10152 6.212993 CCATATCTTTCATCTCATCTCTCCCA 59.787 42.308 0.00 0.00 0.00 4.37
4359 10153 6.352051 CCCATATCTTTCATCTCATCTCTCCC 60.352 46.154 0.00 0.00 0.00 4.30
4376 10194 4.011023 CGTATCGACTTCCTCCCATATCT 58.989 47.826 0.00 0.00 0.00 1.98
4390 10208 5.368256 ACTGTCCATTATACCGTATCGAC 57.632 43.478 0.00 0.00 0.00 4.20
4396 10214 9.918630 GTATTACATTACTGTCCATTATACCGT 57.081 33.333 0.00 0.00 36.79 4.83
4418 10236 9.884636 TCAGCTGTTTGTTGTATATACAGTATT 57.115 29.630 14.67 0.00 38.70 1.89
4419 10237 9.534565 CTCAGCTGTTTGTTGTATATACAGTAT 57.465 33.333 14.67 0.00 38.70 2.12
4420 10238 8.528643 ACTCAGCTGTTTGTTGTATATACAGTA 58.471 33.333 14.67 6.39 38.70 2.74
4421 10239 7.386851 ACTCAGCTGTTTGTTGTATATACAGT 58.613 34.615 14.67 0.47 38.70 3.55
4422 10240 7.761704 AGACTCAGCTGTTTGTTGTATATACAG 59.238 37.037 14.67 5.54 39.29 2.74
4423 10241 7.545615 CAGACTCAGCTGTTTGTTGTATATACA 59.454 37.037 14.67 11.62 0.00 2.29
4424 10242 7.464710 GCAGACTCAGCTGTTTGTTGTATATAC 60.465 40.741 14.67 5.89 38.17 1.47
4425 10243 6.535150 GCAGACTCAGCTGTTTGTTGTATATA 59.465 38.462 14.67 0.00 38.17 0.86
4428 10246 3.499918 GCAGACTCAGCTGTTTGTTGTAT 59.500 43.478 14.67 0.00 38.17 2.29
4450 10279 6.036300 TGTCTGTTTTACTTTTACCAGACACG 59.964 38.462 14.34 0.00 41.59 4.49
4474 10303 7.504911 ACATGGATCAAATTCTCTCCCTATTTG 59.495 37.037 0.00 0.00 39.46 2.32
4486 10315 6.976925 GGAATTCAGACACATGGATCAAATTC 59.023 38.462 7.93 18.74 33.20 2.17
4493 10322 3.055167 TGACGGAATTCAGACACATGGAT 60.055 43.478 12.79 0.00 0.00 3.41
4550 10389 4.100373 GGAGGGGAGAGCATATTCATACT 58.900 47.826 0.00 0.00 0.00 2.12
4577 10416 0.417437 TCCCTGTCCCTCTCATTGGA 59.583 55.000 0.00 0.00 0.00 3.53
4598 10437 1.540267 CCAGATACCGTATGGAGGACG 59.460 57.143 8.33 0.00 41.95 4.79
4602 10441 1.273606 CAGCCCAGATACCGTATGGAG 59.726 57.143 8.33 0.00 41.95 3.86
4605 10444 1.686587 TCACAGCCCAGATACCGTATG 59.313 52.381 0.00 0.00 0.00 2.39
4649 10491 4.321527 GGAGCCATCCTTGTCAAGAAAAAG 60.322 45.833 14.42 0.00 42.94 2.27
4655 11176 0.622665 AGGGAGCCATCCTTGTCAAG 59.377 55.000 5.53 5.53 45.85 3.02
4656 11177 0.620556 GAGGGAGCCATCCTTGTCAA 59.379 55.000 0.00 0.00 45.85 3.18
4657 11178 1.274703 GGAGGGAGCCATCCTTGTCA 61.275 60.000 12.74 0.00 45.85 3.58
4701 11222 9.555727 GGAGCCAGTTGAAAATGTACTATTATA 57.444 33.333 0.00 0.00 0.00 0.98
4702 11223 8.275040 AGGAGCCAGTTGAAAATGTACTATTAT 58.725 33.333 0.00 0.00 0.00 1.28
4705 11226 6.067217 AGGAGCCAGTTGAAAATGTACTAT 57.933 37.500 0.00 0.00 0.00 2.12
4706 11227 5.012664 TGAGGAGCCAGTTGAAAATGTACTA 59.987 40.000 0.00 0.00 0.00 1.82
4707 11228 4.202461 TGAGGAGCCAGTTGAAAATGTACT 60.202 41.667 0.00 0.00 0.00 2.73
4708 11229 4.072131 TGAGGAGCCAGTTGAAAATGTAC 58.928 43.478 0.00 0.00 0.00 2.90
4709 11230 4.072131 GTGAGGAGCCAGTTGAAAATGTA 58.928 43.478 0.00 0.00 0.00 2.29
4710 11231 2.887152 GTGAGGAGCCAGTTGAAAATGT 59.113 45.455 0.00 0.00 0.00 2.71
4711 11232 3.152341 AGTGAGGAGCCAGTTGAAAATG 58.848 45.455 0.00 0.00 0.00 2.32
4712 11233 3.073650 AGAGTGAGGAGCCAGTTGAAAAT 59.926 43.478 0.00 0.00 0.00 1.82
4713 11234 2.439507 AGAGTGAGGAGCCAGTTGAAAA 59.560 45.455 0.00 0.00 0.00 2.29
4714 11235 2.037772 GAGAGTGAGGAGCCAGTTGAAA 59.962 50.000 0.00 0.00 0.00 2.69
4715 11236 1.620819 GAGAGTGAGGAGCCAGTTGAA 59.379 52.381 0.00 0.00 0.00 2.69
4717 11238 0.248843 GGAGAGTGAGGAGCCAGTTG 59.751 60.000 0.00 0.00 0.00 3.16
4718 11239 0.907230 GGGAGAGTGAGGAGCCAGTT 60.907 60.000 0.00 0.00 0.00 3.16
4720 11241 1.305633 TGGGAGAGTGAGGAGCCAG 60.306 63.158 0.00 0.00 0.00 4.85
4722 11243 0.980231 ATGTGGGAGAGTGAGGAGCC 60.980 60.000 0.00 0.00 0.00 4.70
4723 11244 0.908198 AATGTGGGAGAGTGAGGAGC 59.092 55.000 0.00 0.00 0.00 4.70
4724 11245 4.202305 GGATAAATGTGGGAGAGTGAGGAG 60.202 50.000 0.00 0.00 0.00 3.69
4726 11247 3.181450 GGGATAAATGTGGGAGAGTGAGG 60.181 52.174 0.00 0.00 0.00 3.86
4729 11326 2.485479 CCGGGATAAATGTGGGAGAGTG 60.485 54.545 0.00 0.00 0.00 3.51
4739 11336 1.095228 ACTGTGCGCCGGGATAAATG 61.095 55.000 4.18 0.00 0.00 2.32
4753 11350 0.392193 GAGGCATGGTCTGGACTGTG 60.392 60.000 0.00 2.09 0.00 3.66
4765 11362 1.154035 GTTTTTCGGCCGAGGCATG 60.154 57.895 29.20 7.81 44.11 4.06
4786 11383 2.920912 GTGGGGTCTGGTCGGACA 60.921 66.667 10.76 0.00 37.91 4.02
4788 11385 0.252330 TTATGTGGGGTCTGGTCGGA 60.252 55.000 0.00 0.00 0.00 4.55
4791 11388 0.899720 TCGTTATGTGGGGTCTGGTC 59.100 55.000 0.00 0.00 0.00 4.02
4798 11395 2.483014 TTTGACCTCGTTATGTGGGG 57.517 50.000 0.00 0.00 35.46 4.96
4800 11397 3.374058 GGACATTTGACCTCGTTATGTGG 59.626 47.826 0.00 0.00 37.26 4.17
4812 11409 1.079503 GGAGAGCGTGGACATTTGAC 58.920 55.000 0.00 0.00 0.00 3.18
4839 11437 2.026641 CCACATATGGCTGGGTTTGAG 58.973 52.381 7.80 0.00 39.82 3.02
4840 11438 1.341877 CCCACATATGGCTGGGTTTGA 60.342 52.381 19.10 0.00 45.76 2.69
4844 11442 3.073599 GCCCCACATATGGCTGGGT 62.074 63.158 23.33 0.00 45.35 4.51
4847 11445 0.538057 AATCGCCCCACATATGGCTG 60.538 55.000 7.80 0.00 45.76 4.85
4864 11462 0.767375 AGCATGGACCGCCTCATAAT 59.233 50.000 0.00 0.00 34.31 1.28
4880 11502 2.591753 GCATAGGCCAGTCCAGCA 59.408 61.111 5.01 0.00 37.29 4.41
4893 11515 2.938243 TGGTGTGGGGCTGGCATA 60.938 61.111 2.88 0.00 0.00 3.14
4902 11524 0.396417 TTGGTTTGAGGTGGTGTGGG 60.396 55.000 0.00 0.00 0.00 4.61
4916 11538 0.404426 GTGAGGCCTAGGGTTTGGTT 59.596 55.000 4.42 0.00 0.00 3.67
4917 11539 0.475828 AGTGAGGCCTAGGGTTTGGT 60.476 55.000 4.42 0.00 0.00 3.67
4940 11562 1.217779 GGAGTGGAGCAGAGCAGTC 59.782 63.158 0.00 0.00 0.00 3.51
4947 11569 0.622665 ATGGAAAGGGAGTGGAGCAG 59.377 55.000 0.00 0.00 0.00 4.24
4955 11577 4.202409 GGAGAGGACAATATGGAAAGGGAG 60.202 50.000 0.00 0.00 0.00 4.30
4963 11585 3.326297 GGAGAAGGGAGAGGACAATATGG 59.674 52.174 0.00 0.00 0.00 2.74
4964 11586 4.230455 AGGAGAAGGGAGAGGACAATATG 58.770 47.826 0.00 0.00 0.00 1.78
4965 11587 4.488770 GAGGAGAAGGGAGAGGACAATAT 58.511 47.826 0.00 0.00 0.00 1.28
4966 11588 3.374318 GGAGGAGAAGGGAGAGGACAATA 60.374 52.174 0.00 0.00 0.00 1.90
4967 11589 2.628290 GGAGGAGAAGGGAGAGGACAAT 60.628 54.545 0.00 0.00 0.00 2.71
4968 11590 1.273324 GGAGGAGAAGGGAGAGGACAA 60.273 57.143 0.00 0.00 0.00 3.18
4969 11591 0.336737 GGAGGAGAAGGGAGAGGACA 59.663 60.000 0.00 0.00 0.00 4.02
4970 11592 0.753848 CGGAGGAGAAGGGAGAGGAC 60.754 65.000 0.00 0.00 0.00 3.85
4971 11593 1.615814 CGGAGGAGAAGGGAGAGGA 59.384 63.158 0.00 0.00 0.00 3.71
4972 11594 2.131067 GCGGAGGAGAAGGGAGAGG 61.131 68.421 0.00 0.00 0.00 3.69
4973 11595 1.076339 AGCGGAGGAGAAGGGAGAG 60.076 63.158 0.00 0.00 0.00 3.20
4974 11596 1.076632 GAGCGGAGGAGAAGGGAGA 60.077 63.158 0.00 0.00 0.00 3.71
4975 11597 2.131067 GGAGCGGAGGAGAAGGGAG 61.131 68.421 0.00 0.00 0.00 4.30
4976 11598 2.042843 GGAGCGGAGGAGAAGGGA 60.043 66.667 0.00 0.00 0.00 4.20
4977 11599 2.364317 TGGAGCGGAGGAGAAGGG 60.364 66.667 0.00 0.00 0.00 3.95
4983 11605 3.083349 CCATGGTGGAGCGGAGGA 61.083 66.667 2.57 0.00 40.96 3.71
4985 11607 4.864334 GGCCATGGTGGAGCGGAG 62.864 72.222 14.67 0.00 40.96 4.63
5005 11627 0.464013 CTCCCAATCTGCTGCCTGAG 60.464 60.000 0.00 0.00 0.00 3.35
5006 11628 1.203441 ACTCCCAATCTGCTGCCTGA 61.203 55.000 0.00 0.00 0.00 3.86
5007 11629 0.747283 GACTCCCAATCTGCTGCCTG 60.747 60.000 0.00 0.00 0.00 4.85
5008 11630 1.606531 GACTCCCAATCTGCTGCCT 59.393 57.895 0.00 0.00 0.00 4.75
5009 11631 1.452833 GGACTCCCAATCTGCTGCC 60.453 63.158 0.00 0.00 0.00 4.85
5010 11632 0.322816 TTGGACTCCCAATCTGCTGC 60.323 55.000 0.00 0.00 46.94 5.25
5011 11633 3.963733 TTGGACTCCCAATCTGCTG 57.036 52.632 0.00 0.00 46.94 4.41
5019 11641 1.452801 GGTCGGTTTTGGACTCCCA 59.547 57.895 0.00 0.00 41.64 4.37
5020 11642 1.303074 GGGTCGGTTTTGGACTCCC 60.303 63.158 0.00 0.00 34.82 4.30
5021 11643 0.179012 TTGGGTCGGTTTTGGACTCC 60.179 55.000 0.00 0.00 33.88 3.85
5022 11644 1.905637 ATTGGGTCGGTTTTGGACTC 58.094 50.000 0.00 0.00 35.42 3.36
5023 11645 1.960689 CAATTGGGTCGGTTTTGGACT 59.039 47.619 0.00 0.00 34.82 3.85
5024 11646 1.957877 TCAATTGGGTCGGTTTTGGAC 59.042 47.619 5.42 0.00 0.00 4.02
5025 11647 2.366640 TCAATTGGGTCGGTTTTGGA 57.633 45.000 5.42 0.00 0.00 3.53
5026 11648 3.244044 ACAATCAATTGGGTCGGTTTTGG 60.244 43.478 5.42 0.00 41.96 3.28
5027 11649 3.740321 CACAATCAATTGGGTCGGTTTTG 59.260 43.478 5.42 0.90 41.96 2.44
5028 11650 3.639094 TCACAATCAATTGGGTCGGTTTT 59.361 39.130 5.42 0.00 41.80 2.43
5029 11651 3.226777 TCACAATCAATTGGGTCGGTTT 58.773 40.909 5.42 0.00 41.80 3.27
5030 11652 2.870175 TCACAATCAATTGGGTCGGTT 58.130 42.857 5.42 0.00 41.80 4.44
5031 11653 2.577606 TCACAATCAATTGGGTCGGT 57.422 45.000 5.42 0.00 41.80 4.69
5032 11654 2.754552 ACATCACAATCAATTGGGTCGG 59.245 45.455 5.42 0.00 41.80 4.79
5033 11655 3.427909 CCACATCACAATCAATTGGGTCG 60.428 47.826 5.42 0.97 41.80 4.79
5034 11656 3.511146 ACCACATCACAATCAATTGGGTC 59.489 43.478 5.42 0.00 41.80 4.46
5035 11657 3.509442 ACCACATCACAATCAATTGGGT 58.491 40.909 5.42 0.00 41.80 4.51
5036 11658 4.247258 CAACCACATCACAATCAATTGGG 58.753 43.478 5.42 3.24 42.47 4.12
5037 11659 3.680937 GCAACCACATCACAATCAATTGG 59.319 43.478 5.42 0.00 41.96 3.16
5038 11660 4.387559 CAGCAACCACATCACAATCAATTG 59.612 41.667 0.00 0.00 43.26 2.32
5039 11661 4.562082 CAGCAACCACATCACAATCAATT 58.438 39.130 0.00 0.00 0.00 2.32
5040 11662 3.615592 GCAGCAACCACATCACAATCAAT 60.616 43.478 0.00 0.00 0.00 2.57
5041 11663 2.288334 GCAGCAACCACATCACAATCAA 60.288 45.455 0.00 0.00 0.00 2.57
5042 11664 1.270274 GCAGCAACCACATCACAATCA 59.730 47.619 0.00 0.00 0.00 2.57
5045 11667 1.653667 CGCAGCAACCACATCACAA 59.346 52.632 0.00 0.00 0.00 3.33
5053 11675 1.301716 GAAGACTCCGCAGCAACCA 60.302 57.895 0.00 0.00 0.00 3.67
5055 11677 0.737715 ATCGAAGACTCCGCAGCAAC 60.738 55.000 0.00 0.00 42.51 4.17
5057 11679 1.139734 GATCGAAGACTCCGCAGCA 59.860 57.895 0.00 0.00 42.51 4.41
5060 11682 0.171231 CACAGATCGAAGACTCCGCA 59.829 55.000 0.00 0.00 42.51 5.69
5062 11684 2.254459 CAACACAGATCGAAGACTCCG 58.746 52.381 0.00 0.00 42.51 4.63
5074 11696 0.105964 CCCTTGTCGGACAACACAGA 59.894 55.000 19.07 0.00 33.96 3.41
5075 11697 0.884704 CCCCTTGTCGGACAACACAG 60.885 60.000 19.07 9.72 33.96 3.66
5077 11699 2.258726 GCCCCTTGTCGGACAACAC 61.259 63.158 19.07 5.83 33.96 3.32
5078 11700 2.112297 GCCCCTTGTCGGACAACA 59.888 61.111 19.07 0.76 33.96 3.33
5081 11703 3.691342 CGAGCCCCTTGTCGGACA 61.691 66.667 6.76 6.76 32.40 4.02
5116 11738 2.748058 GAAGAGCCGCCCTTGTCCAA 62.748 60.000 0.00 0.00 0.00 3.53
5164 11786 2.568090 GCGGTTGCATTCACCCTG 59.432 61.111 0.40 0.00 42.15 4.45
5205 11827 2.732658 GACGTTGGTCCACTCGGT 59.267 61.111 16.64 2.61 37.19 4.69
5206 11828 2.430244 CGACGTTGGTCCACTCGG 60.430 66.667 16.64 0.00 40.17 4.63
5210 11832 1.374252 ATGAGCGACGTTGGTCCAC 60.374 57.895 27.62 8.63 40.17 4.02
5232 11854 0.317603 CGAAGACGACACACCGAAGT 60.318 55.000 0.00 0.00 42.66 3.01
5237 11859 1.374252 ATGCCGAAGACGACACACC 60.374 57.895 0.00 0.00 42.66 4.16
5246 11868 1.138859 CATGGGAGTACATGCCGAAGA 59.861 52.381 0.00 0.00 43.95 2.87
5248 11870 3.778619 CATGGGAGTACATGCCGAA 57.221 52.632 0.00 0.00 43.95 4.30
5255 11877 0.321210 CAACGGTGCATGGGAGTACA 60.321 55.000 0.00 0.00 0.00 2.90
5257 11879 1.298340 CCAACGGTGCATGGGAGTA 59.702 57.895 0.00 0.00 32.87 2.59
5260 11882 1.900981 CAACCAACGGTGCATGGGA 60.901 57.895 8.86 0.00 41.17 4.37
5262 11884 2.049248 GCAACCAACGGTGCATGG 60.049 61.111 0.00 2.41 42.60 3.66
5263 11885 1.081242 GAGCAACCAACGGTGCATG 60.081 57.895 0.00 0.00 35.34 4.06
5264 11886 0.823356 AAGAGCAACCAACGGTGCAT 60.823 50.000 0.00 0.00 35.34 3.96
5269 11891 1.569493 CGACAAGAGCAACCAACGG 59.431 57.895 0.00 0.00 0.00 4.44
5279 11901 0.179176 CTCAGAGGACGCGACAAGAG 60.179 60.000 15.93 8.68 0.00 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.