Multiple sequence alignment - TraesCS4A01G308900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G308900 chr4A 100.000 3464 0 0 1 3464 602271639 602275102 0.000000e+00 6397.0
1 TraesCS4A01G308900 chr4A 81.328 1446 225 30 1011 2435 602307937 602306516 0.000000e+00 1133.0
2 TraesCS4A01G308900 chr4A 94.915 59 3 0 1 59 735504767 735504825 3.680000e-15 93.5
3 TraesCS4A01G308900 chr4D 92.021 2444 142 26 17 2437 3251732 3249319 0.000000e+00 3384.0
4 TraesCS4A01G308900 chr4D 82.630 1445 208 27 1011 2435 3241596 3243017 0.000000e+00 1238.0
5 TraesCS4A01G308900 chr4D 83.486 218 22 10 3252 3464 419955176 419954968 1.270000e-44 191.0
6 TraesCS4A01G308900 chr4D 98.000 50 1 0 2491 2540 3249223 3249174 1.710000e-13 87.9
7 TraesCS4A01G308900 chr4B 92.833 1451 91 5 991 2437 3831285 3829844 0.000000e+00 2091.0
8 TraesCS4A01G308900 chr4B 81.723 1439 226 22 1011 2435 3820818 3822233 0.000000e+00 1166.0
9 TraesCS4A01G308900 chr4B 91.607 560 47 0 2692 3251 216230939 216231498 0.000000e+00 774.0
10 TraesCS4A01G308900 chr4B 91.203 557 49 0 2695 3251 322776124 322776680 0.000000e+00 758.0
11 TraesCS4A01G308900 chr4B 84.884 602 56 15 29 599 3832275 3831678 3.000000e-160 575.0
12 TraesCS4A01G308900 chr4B 89.973 369 21 8 638 1005 3831669 3831316 2.440000e-126 462.0
13 TraesCS4A01G308900 chr4B 90.498 221 15 4 3250 3464 661570435 661570655 1.570000e-73 287.0
14 TraesCS4A01G308900 chr4B 96.296 54 2 0 2487 2540 3829753 3829700 4.760000e-14 89.8
15 TraesCS4A01G308900 chr4B 97.297 37 1 0 12 48 3832316 3832280 2.890000e-06 63.9
16 TraesCS4A01G308900 chr7B 93.537 557 36 0 2695 3251 458119788 458119232 0.000000e+00 830.0
17 TraesCS4A01G308900 chr7B 86.916 214 20 6 3252 3464 505082182 505082388 2.080000e-57 233.0
18 TraesCS4A01G308900 chr2B 93.537 557 36 0 2695 3251 82324694 82324138 0.000000e+00 830.0
19 TraesCS4A01G308900 chr2B 88.479 217 21 2 3252 3464 793569871 793569655 3.430000e-65 259.0
20 TraesCS4A01G308900 chr3A 91.382 557 48 0 2695 3251 920995 920439 0.000000e+00 763.0
21 TraesCS4A01G308900 chr3A 89.720 214 4 1 3251 3464 121786666 121786471 1.230000e-64 257.0
22 TraesCS4A01G308900 chr1A 91.455 550 47 0 2702 3251 588955546 588954997 0.000000e+00 756.0
23 TraesCS4A01G308900 chr1A 90.000 560 54 1 2692 3251 534309500 534310057 0.000000e+00 723.0
24 TraesCS4A01G308900 chr1A 93.151 219 7 5 3252 3464 439326261 439326045 7.220000e-82 315.0
25 TraesCS4A01G308900 chr1A 87.448 239 7 5 3249 3464 56458958 56459196 1.600000e-63 254.0
26 TraesCS4A01G308900 chr2A 90.860 558 48 2 2695 3250 761414160 761413604 0.000000e+00 745.0
27 TraesCS4A01G308900 chr7A 89.643 560 58 0 2692 3251 136774159 136774718 0.000000e+00 713.0
28 TraesCS4A01G308900 chr7A 90.141 213 3 1 3252 3464 351961264 351961070 9.540000e-66 261.0
29 TraesCS4A01G308900 chr6A 88.066 243 5 6 3246 3464 94904862 94904620 2.050000e-67 267.0
30 TraesCS4A01G308900 chr6D 84.862 218 24 9 3252 3464 54881253 54881040 9.740000e-51 211.0
31 TraesCS4A01G308900 chrUn 83.486 218 23 10 3252 3464 104476105 104475896 1.270000e-44 191.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G308900 chr4A 602271639 602275102 3463 False 6397.00 6397 100.0000 1 3464 1 chr4A.!!$F1 3463
1 TraesCS4A01G308900 chr4A 602306516 602307937 1421 True 1133.00 1133 81.3280 1011 2435 1 chr4A.!!$R1 1424
2 TraesCS4A01G308900 chr4D 3249174 3251732 2558 True 1735.95 3384 95.0105 17 2540 2 chr4D.!!$R2 2523
3 TraesCS4A01G308900 chr4D 3241596 3243017 1421 False 1238.00 1238 82.6300 1011 2435 1 chr4D.!!$F1 1424
4 TraesCS4A01G308900 chr4B 3820818 3822233 1415 False 1166.00 1166 81.7230 1011 2435 1 chr4B.!!$F1 1424
5 TraesCS4A01G308900 chr4B 216230939 216231498 559 False 774.00 774 91.6070 2692 3251 1 chr4B.!!$F2 559
6 TraesCS4A01G308900 chr4B 322776124 322776680 556 False 758.00 758 91.2030 2695 3251 1 chr4B.!!$F3 556
7 TraesCS4A01G308900 chr4B 3829700 3832316 2616 True 656.34 2091 92.2566 12 2540 5 chr4B.!!$R1 2528
8 TraesCS4A01G308900 chr7B 458119232 458119788 556 True 830.00 830 93.5370 2695 3251 1 chr7B.!!$R1 556
9 TraesCS4A01G308900 chr2B 82324138 82324694 556 True 830.00 830 93.5370 2695 3251 1 chr2B.!!$R1 556
10 TraesCS4A01G308900 chr3A 920439 920995 556 True 763.00 763 91.3820 2695 3251 1 chr3A.!!$R1 556
11 TraesCS4A01G308900 chr1A 588954997 588955546 549 True 756.00 756 91.4550 2702 3251 1 chr1A.!!$R2 549
12 TraesCS4A01G308900 chr1A 534309500 534310057 557 False 723.00 723 90.0000 2692 3251 1 chr1A.!!$F2 559
13 TraesCS4A01G308900 chr2A 761413604 761414160 556 True 745.00 745 90.8600 2695 3250 1 chr2A.!!$R1 555
14 TraesCS4A01G308900 chr7A 136774159 136774718 559 False 713.00 713 89.6430 2692 3251 1 chr7A.!!$F1 559

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
233 262 0.032130 CGCCAGCGACATAGTGGTAT 59.968 55.0 6.06 0.0 42.83 2.73 F
1635 1771 0.112606 AGTTCGTGGAGGAGGTGAGA 59.887 55.0 0.00 0.0 0.00 3.27 F
1800 1936 0.250234 GCACCATAGACCAGAGCACA 59.750 55.0 0.00 0.0 0.00 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1686 1822 0.317160 ATGCGACGAACTGTTCCTCA 59.683 50.0 14.48 7.78 0.0 3.86 R
2443 2579 0.037326 CACCTAGCAGAGCAAACGGA 60.037 55.0 0.00 0.00 0.0 4.69 R
3272 3452 0.038709 GCAAAACCAGTGCGCCATTA 60.039 50.0 4.18 0.00 31.2 1.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 85 5.440234 TGCGGCTAAAAAGAAACATTACA 57.560 34.783 0.00 0.00 0.00 2.41
61 86 5.833082 TGCGGCTAAAAAGAAACATTACAA 58.167 33.333 0.00 0.00 0.00 2.41
161 190 3.612247 GACGTCATGGCTGCCCAGT 62.612 63.158 17.53 8.67 46.24 4.00
188 217 0.118346 TCTGGGACCTGGCTTCCTTA 59.882 55.000 3.61 0.00 33.17 2.69
218 247 2.048033 ATAAACGGTGCGTCGCCA 60.048 55.556 15.88 0.00 39.99 5.69
233 262 0.032130 CGCCAGCGACATAGTGGTAT 59.968 55.000 6.06 0.00 42.83 2.73
276 305 3.151022 GCAGCTCCCGCTCTAGGT 61.151 66.667 0.00 0.00 45.15 3.08
345 374 4.752879 GAACCGCGCCAGCCACTA 62.753 66.667 0.00 0.00 41.18 2.74
350 379 2.125832 GCGCCAGCCACTACGTAA 60.126 61.111 0.00 0.00 37.42 3.18
360 389 2.931969 GCCACTACGTAAACATACACCC 59.068 50.000 0.00 0.00 0.00 4.61
361 390 3.617045 GCCACTACGTAAACATACACCCA 60.617 47.826 0.00 0.00 0.00 4.51
362 391 4.178540 CCACTACGTAAACATACACCCAG 58.821 47.826 0.00 0.00 0.00 4.45
416 445 2.390599 GCTCGTCGCCATGCTTTCA 61.391 57.895 0.00 0.00 0.00 2.69
419 454 2.034879 CGTCGCCATGCTTTCACCT 61.035 57.895 0.00 0.00 0.00 4.00
422 457 0.960364 TCGCCATGCTTTCACCTTCC 60.960 55.000 0.00 0.00 0.00 3.46
426 461 3.026694 GCCATGCTTTCACCTTCCTTAT 58.973 45.455 0.00 0.00 0.00 1.73
437 472 4.140900 TCACCTTCCTTATTTTGTGGGGAA 60.141 41.667 0.00 0.00 35.21 3.97
438 473 4.021456 CACCTTCCTTATTTTGTGGGGAAC 60.021 45.833 0.00 0.00 33.28 3.62
439 474 4.156477 CCTTCCTTATTTTGTGGGGAACA 58.844 43.478 0.00 0.00 36.85 3.18
441 476 4.733077 TCCTTATTTTGTGGGGAACAGA 57.267 40.909 0.00 0.00 40.74 3.41
453 495 1.213296 GGAACAGATAGCCCAAGGGA 58.787 55.000 9.92 0.00 37.50 4.20
454 496 1.777272 GGAACAGATAGCCCAAGGGAT 59.223 52.381 9.92 4.92 37.50 3.85
495 541 2.189594 TGCTGAGTTGATCAAGTGGG 57.810 50.000 20.46 12.79 37.52 4.61
504 550 1.067142 TGATCAAGTGGGTGTACGAGC 60.067 52.381 0.00 0.00 0.00 5.03
521 582 3.906660 GCGGTGGCTGCTATATACA 57.093 52.632 0.00 0.00 35.83 2.29
528 589 5.182570 CGGTGGCTGCTATATACAAGTACTA 59.817 44.000 0.00 0.00 0.00 1.82
550 614 7.183460 ACTATGTTTGTTCTACTACTCCCTCT 58.817 38.462 0.00 0.00 0.00 3.69
561 625 7.406916 TCTACTACTCCCTCTGATCCATATTC 58.593 42.308 0.00 0.00 0.00 1.75
571 635 8.194104 CCCTCTGATCCATATTCGTTATCTTAG 58.806 40.741 0.00 0.00 0.00 2.18
604 669 9.816354 CTAGATACGAATCTATCTGATCAGAGA 57.184 37.037 28.26 23.53 42.51 3.10
616 681 5.444176 TCTGATCAGAGAGAGTAGATTGCA 58.556 41.667 21.67 0.00 32.82 4.08
699 764 3.305335 CCAAAACCGGACATCAAGGAAAG 60.305 47.826 9.46 0.00 0.00 2.62
735 800 1.877443 GTGAATTACACGTGCAACCCT 59.123 47.619 17.22 0.00 39.78 4.34
736 801 3.068560 GTGAATTACACGTGCAACCCTA 58.931 45.455 17.22 0.00 39.78 3.53
737 802 3.687698 GTGAATTACACGTGCAACCCTAT 59.312 43.478 17.22 0.00 39.78 2.57
739 804 1.999048 TTACACGTGCAACCCTATCG 58.001 50.000 17.22 0.00 0.00 2.92
740 805 0.173935 TACACGTGCAACCCTATCGG 59.826 55.000 17.22 0.00 37.81 4.18
782 847 0.318699 GCTTTGTCTTTTGGCCCGTC 60.319 55.000 0.00 0.00 0.00 4.79
856 922 1.556451 AGCACAGAGGCACATCACATA 59.444 47.619 0.00 0.00 35.83 2.29
943 1009 3.411446 TCCTTAAGCACATGGACAACAG 58.589 45.455 0.00 0.00 0.00 3.16
1058 1182 4.811557 GGAGAAATCCATTACTCTTCCACG 59.188 45.833 0.00 0.00 0.00 4.94
1066 1190 2.410785 TACTCTTCCACGAACACACG 57.589 50.000 0.00 0.00 39.31 4.49
1335 1459 3.465966 TGTTCCTGTCCCTCTATAGGCTA 59.534 47.826 0.00 0.00 42.14 3.93
1473 1597 2.852075 TTCACCGGCCCTTCCTGT 60.852 61.111 0.00 0.00 31.96 4.00
1635 1771 0.112606 AGTTCGTGGAGGAGGTGAGA 59.887 55.000 0.00 0.00 0.00 3.27
1686 1822 3.837570 GAACACGTTCCGGGGCCTT 62.838 63.158 0.84 0.00 32.94 4.35
1720 1856 2.202797 CATGCTACGAGGCAGCGT 60.203 61.111 10.15 10.15 45.75 5.07
1800 1936 0.250234 GCACCATAGACCAGAGCACA 59.750 55.000 0.00 0.00 0.00 4.57
1984 2120 1.196354 CAGAAGCAAAAGAGTGGCTCG 59.804 52.381 0.00 0.00 36.76 5.03
2176 2312 2.079925 GTGACCAGTTCCTCAATGAGC 58.920 52.381 4.40 0.00 0.00 4.26
2228 2364 0.810031 CCAGTTAGGCCGTTCGATGG 60.810 60.000 0.00 0.00 0.00 3.51
2246 2382 2.032071 CGAAAAGGCCGTGGACCT 59.968 61.111 0.00 0.00 40.02 3.85
2384 2520 2.859273 AAAGGAGGCTCGTCGCATGG 62.859 60.000 10.54 0.00 41.67 3.66
2394 2530 0.948623 CGTCGCATGGAAACCTGACA 60.949 55.000 0.00 0.00 0.00 3.58
2405 2541 3.617263 GGAAACCTGACACTGCTATTACG 59.383 47.826 0.00 0.00 0.00 3.18
2437 2573 1.228367 AGTGGCAGCAAGGAACAGG 60.228 57.895 0.00 0.00 0.00 4.00
2438 2574 1.529244 GTGGCAGCAAGGAACAGGT 60.529 57.895 0.00 0.00 0.00 4.00
2439 2575 1.109323 GTGGCAGCAAGGAACAGGTT 61.109 55.000 0.00 0.00 0.00 3.50
2441 2577 1.133637 TGGCAGCAAGGAACAGGTTAA 60.134 47.619 0.00 0.00 0.00 2.01
2443 2579 2.562738 GGCAGCAAGGAACAGGTTAATT 59.437 45.455 0.00 0.00 0.00 1.40
2444 2580 3.367395 GGCAGCAAGGAACAGGTTAATTC 60.367 47.826 0.00 0.00 0.00 2.17
2445 2581 3.367395 GCAGCAAGGAACAGGTTAATTCC 60.367 47.826 0.00 0.00 44.14 3.01
2479 2635 1.461127 GGTGAAGTGTGAATCGTGCTC 59.539 52.381 0.00 0.00 0.00 4.26
2482 2638 2.802247 TGAAGTGTGAATCGTGCTCAAG 59.198 45.455 0.00 0.00 0.00 3.02
2483 2639 2.820059 AGTGTGAATCGTGCTCAAGA 57.180 45.000 0.00 0.00 0.00 3.02
2484 2640 3.111853 AGTGTGAATCGTGCTCAAGAA 57.888 42.857 0.00 0.00 0.00 2.52
2486 2642 4.820897 AGTGTGAATCGTGCTCAAGAATA 58.179 39.130 0.00 0.00 0.00 1.75
2487 2643 5.423015 AGTGTGAATCGTGCTCAAGAATAT 58.577 37.500 0.00 0.00 0.00 1.28
2488 2644 5.521735 AGTGTGAATCGTGCTCAAGAATATC 59.478 40.000 0.00 0.00 0.00 1.63
2489 2645 4.811024 TGTGAATCGTGCTCAAGAATATCC 59.189 41.667 0.00 0.00 0.00 2.59
2537 2715 2.760634 CCACTTGGTTATTTTGCCCC 57.239 50.000 0.00 0.00 0.00 5.80
2540 2718 2.637382 CACTTGGTTATTTTGCCCCCTT 59.363 45.455 0.00 0.00 0.00 3.95
2541 2719 3.072330 CACTTGGTTATTTTGCCCCCTTT 59.928 43.478 0.00 0.00 0.00 3.11
2542 2720 4.284746 CACTTGGTTATTTTGCCCCCTTTA 59.715 41.667 0.00 0.00 0.00 1.85
2543 2721 4.285003 ACTTGGTTATTTTGCCCCCTTTAC 59.715 41.667 0.00 0.00 0.00 2.01
2544 2722 3.174779 TGGTTATTTTGCCCCCTTTACC 58.825 45.455 0.00 0.00 0.00 2.85
2545 2723 2.502538 GGTTATTTTGCCCCCTTTACCC 59.497 50.000 0.00 0.00 0.00 3.69
2546 2724 2.502538 GTTATTTTGCCCCCTTTACCCC 59.497 50.000 0.00 0.00 0.00 4.95
2547 2725 0.252974 ATTTTGCCCCCTTTACCCCC 60.253 55.000 0.00 0.00 0.00 5.40
2548 2726 1.381089 TTTTGCCCCCTTTACCCCCT 61.381 55.000 0.00 0.00 0.00 4.79
2549 2727 1.381089 TTTGCCCCCTTTACCCCCTT 61.381 55.000 0.00 0.00 0.00 3.95
2550 2728 1.806690 TTGCCCCCTTTACCCCCTTC 61.807 60.000 0.00 0.00 0.00 3.46
2551 2729 2.243144 GCCCCCTTTACCCCCTTCA 61.243 63.158 0.00 0.00 0.00 3.02
2552 2730 1.695465 CCCCCTTTACCCCCTTCAC 59.305 63.158 0.00 0.00 0.00 3.18
2553 2731 1.695465 CCCCTTTACCCCCTTCACC 59.305 63.158 0.00 0.00 0.00 4.02
2554 2732 0.849540 CCCCTTTACCCCCTTCACCT 60.850 60.000 0.00 0.00 0.00 4.00
2555 2733 0.624254 CCCTTTACCCCCTTCACCTC 59.376 60.000 0.00 0.00 0.00 3.85
2556 2734 1.368374 CCTTTACCCCCTTCACCTCA 58.632 55.000 0.00 0.00 0.00 3.86
2557 2735 1.923148 CCTTTACCCCCTTCACCTCAT 59.077 52.381 0.00 0.00 0.00 2.90
2558 2736 2.311841 CCTTTACCCCCTTCACCTCATT 59.688 50.000 0.00 0.00 0.00 2.57
2559 2737 3.621558 CTTTACCCCCTTCACCTCATTC 58.378 50.000 0.00 0.00 0.00 2.67
2560 2738 2.661176 TACCCCCTTCACCTCATTCT 57.339 50.000 0.00 0.00 0.00 2.40
2561 2739 1.290134 ACCCCCTTCACCTCATTCTC 58.710 55.000 0.00 0.00 0.00 2.87
2562 2740 0.179000 CCCCCTTCACCTCATTCTCG 59.821 60.000 0.00 0.00 0.00 4.04
2563 2741 0.462759 CCCCTTCACCTCATTCTCGC 60.463 60.000 0.00 0.00 0.00 5.03
2564 2742 0.462759 CCCTTCACCTCATTCTCGCC 60.463 60.000 0.00 0.00 0.00 5.54
2565 2743 0.250234 CCTTCACCTCATTCTCGCCA 59.750 55.000 0.00 0.00 0.00 5.69
2566 2744 1.363744 CTTCACCTCATTCTCGCCAC 58.636 55.000 0.00 0.00 0.00 5.01
2567 2745 0.976641 TTCACCTCATTCTCGCCACT 59.023 50.000 0.00 0.00 0.00 4.00
2568 2746 0.532573 TCACCTCATTCTCGCCACTC 59.467 55.000 0.00 0.00 0.00 3.51
2569 2747 0.534412 CACCTCATTCTCGCCACTCT 59.466 55.000 0.00 0.00 0.00 3.24
2570 2748 1.066573 CACCTCATTCTCGCCACTCTT 60.067 52.381 0.00 0.00 0.00 2.85
2571 2749 1.625818 ACCTCATTCTCGCCACTCTTT 59.374 47.619 0.00 0.00 0.00 2.52
2572 2750 2.832129 ACCTCATTCTCGCCACTCTTTA 59.168 45.455 0.00 0.00 0.00 1.85
2573 2751 3.452627 ACCTCATTCTCGCCACTCTTTAT 59.547 43.478 0.00 0.00 0.00 1.40
2574 2752 4.080863 ACCTCATTCTCGCCACTCTTTATT 60.081 41.667 0.00 0.00 0.00 1.40
2575 2753 4.878397 CCTCATTCTCGCCACTCTTTATTT 59.122 41.667 0.00 0.00 0.00 1.40
2576 2754 5.355350 CCTCATTCTCGCCACTCTTTATTTT 59.645 40.000 0.00 0.00 0.00 1.82
2577 2755 6.422776 TCATTCTCGCCACTCTTTATTTTC 57.577 37.500 0.00 0.00 0.00 2.29
2578 2756 6.173339 TCATTCTCGCCACTCTTTATTTTCT 58.827 36.000 0.00 0.00 0.00 2.52
2579 2757 5.862924 TTCTCGCCACTCTTTATTTTCTG 57.137 39.130 0.00 0.00 0.00 3.02
2580 2758 3.684788 TCTCGCCACTCTTTATTTTCTGC 59.315 43.478 0.00 0.00 0.00 4.26
2581 2759 3.674997 TCGCCACTCTTTATTTTCTGCT 58.325 40.909 0.00 0.00 0.00 4.24
2582 2760 3.436704 TCGCCACTCTTTATTTTCTGCTG 59.563 43.478 0.00 0.00 0.00 4.41
2583 2761 3.189287 CGCCACTCTTTATTTTCTGCTGT 59.811 43.478 0.00 0.00 0.00 4.40
2584 2762 4.670221 CGCCACTCTTTATTTTCTGCTGTC 60.670 45.833 0.00 0.00 0.00 3.51
2585 2763 4.670221 GCCACTCTTTATTTTCTGCTGTCG 60.670 45.833 0.00 0.00 0.00 4.35
2586 2764 4.452455 CCACTCTTTATTTTCTGCTGTCGT 59.548 41.667 0.00 0.00 0.00 4.34
2587 2765 5.049405 CCACTCTTTATTTTCTGCTGTCGTT 60.049 40.000 0.00 0.00 0.00 3.85
2588 2766 6.147164 CCACTCTTTATTTTCTGCTGTCGTTA 59.853 38.462 0.00 0.00 0.00 3.18
2589 2767 7.010023 CACTCTTTATTTTCTGCTGTCGTTAC 58.990 38.462 0.00 0.00 0.00 2.50
2590 2768 6.704493 ACTCTTTATTTTCTGCTGTCGTTACA 59.296 34.615 0.00 0.00 0.00 2.41
2591 2769 7.225931 ACTCTTTATTTTCTGCTGTCGTTACAA 59.774 33.333 0.00 0.00 34.49 2.41
2592 2770 7.921787 TCTTTATTTTCTGCTGTCGTTACAAA 58.078 30.769 0.00 0.00 34.49 2.83
2593 2771 8.564574 TCTTTATTTTCTGCTGTCGTTACAAAT 58.435 29.630 0.00 0.00 34.49 2.32
2594 2772 8.500837 TTTATTTTCTGCTGTCGTTACAAATG 57.499 30.769 0.00 0.00 34.49 2.32
2595 2773 5.493133 TTTTCTGCTGTCGTTACAAATGT 57.507 34.783 0.00 0.00 34.49 2.71
2596 2774 6.606234 TTTTCTGCTGTCGTTACAAATGTA 57.394 33.333 0.00 0.00 34.49 2.29
2597 2775 5.839262 TTCTGCTGTCGTTACAAATGTAG 57.161 39.130 0.00 0.00 34.49 2.74
2598 2776 4.878439 TCTGCTGTCGTTACAAATGTAGT 58.122 39.130 0.00 0.00 34.49 2.73
2599 2777 5.294356 TCTGCTGTCGTTACAAATGTAGTT 58.706 37.500 0.00 0.00 34.49 2.24
2600 2778 5.176774 TCTGCTGTCGTTACAAATGTAGTTG 59.823 40.000 0.00 0.00 34.49 3.16
2601 2779 5.051153 TGCTGTCGTTACAAATGTAGTTGA 58.949 37.500 0.00 0.00 34.49 3.18
2602 2780 5.699001 TGCTGTCGTTACAAATGTAGTTGAT 59.301 36.000 0.00 0.00 34.49 2.57
2603 2781 6.869388 TGCTGTCGTTACAAATGTAGTTGATA 59.131 34.615 0.00 0.00 34.49 2.15
2604 2782 7.547722 TGCTGTCGTTACAAATGTAGTTGATAT 59.452 33.333 0.00 0.00 34.49 1.63
2605 2783 9.027129 GCTGTCGTTACAAATGTAGTTGATATA 57.973 33.333 0.00 0.00 34.49 0.86
2610 2788 9.632969 CGTTACAAATGTAGTTGATATACTTGC 57.367 33.333 0.00 0.00 32.59 4.01
2618 2796 8.926715 TGTAGTTGATATACTTGCTAGTGTTG 57.073 34.615 11.27 0.00 35.78 3.33
2619 2797 8.528643 TGTAGTTGATATACTTGCTAGTGTTGT 58.471 33.333 11.27 0.00 35.78 3.32
2628 2806 8.792830 ATACTTGCTAGTGTTGTATTCATGTT 57.207 30.769 11.27 0.00 35.78 2.71
2629 2807 7.510549 ACTTGCTAGTGTTGTATTCATGTTT 57.489 32.000 0.00 0.00 31.99 2.83
2630 2808 7.362662 ACTTGCTAGTGTTGTATTCATGTTTG 58.637 34.615 0.00 0.00 31.99 2.93
2631 2809 6.252967 TGCTAGTGTTGTATTCATGTTTGG 57.747 37.500 0.00 0.00 0.00 3.28
2632 2810 5.767665 TGCTAGTGTTGTATTCATGTTTGGT 59.232 36.000 0.00 0.00 0.00 3.67
2633 2811 6.937465 TGCTAGTGTTGTATTCATGTTTGGTA 59.063 34.615 0.00 0.00 0.00 3.25
2634 2812 7.119116 TGCTAGTGTTGTATTCATGTTTGGTAG 59.881 37.037 0.00 0.00 0.00 3.18
2635 2813 6.254281 AGTGTTGTATTCATGTTTGGTAGC 57.746 37.500 0.00 0.00 0.00 3.58
2636 2814 5.767665 AGTGTTGTATTCATGTTTGGTAGCA 59.232 36.000 0.00 0.00 0.00 3.49
2637 2815 6.434028 AGTGTTGTATTCATGTTTGGTAGCAT 59.566 34.615 0.00 0.00 0.00 3.79
2638 2816 6.527722 GTGTTGTATTCATGTTTGGTAGCATG 59.472 38.462 0.00 0.00 42.62 4.06
2639 2817 6.208402 TGTTGTATTCATGTTTGGTAGCATGT 59.792 34.615 0.00 0.00 42.09 3.21
2640 2818 7.391833 TGTTGTATTCATGTTTGGTAGCATGTA 59.608 33.333 0.00 0.00 42.09 2.29
2641 2819 7.315247 TGTATTCATGTTTGGTAGCATGTAC 57.685 36.000 0.00 0.00 42.09 2.90
2642 2820 5.835113 ATTCATGTTTGGTAGCATGTACC 57.165 39.130 14.19 14.19 42.09 3.34
2643 2821 4.293662 TCATGTTTGGTAGCATGTACCA 57.706 40.909 17.86 17.86 45.08 3.25
2644 2822 4.854173 TCATGTTTGGTAGCATGTACCAT 58.146 39.130 20.69 9.07 45.92 3.55
2645 2823 4.639755 TCATGTTTGGTAGCATGTACCATG 59.360 41.667 20.69 16.96 45.92 3.66
2646 2824 4.027674 TGTTTGGTAGCATGTACCATGT 57.972 40.909 20.69 0.00 45.92 3.21
2647 2825 4.006989 TGTTTGGTAGCATGTACCATGTC 58.993 43.478 20.69 15.68 45.92 3.06
2648 2826 4.261801 GTTTGGTAGCATGTACCATGTCT 58.738 43.478 20.69 2.39 45.92 3.41
2649 2827 5.046231 TGTTTGGTAGCATGTACCATGTCTA 60.046 40.000 20.69 8.80 45.92 2.59
2650 2828 5.887214 TTGGTAGCATGTACCATGTCTAT 57.113 39.130 20.69 0.00 45.92 1.98
2651 2829 5.213891 TGGTAGCATGTACCATGTCTATG 57.786 43.478 17.86 0.00 42.21 2.23
2652 2830 4.653801 TGGTAGCATGTACCATGTCTATGT 59.346 41.667 17.86 0.00 42.21 2.29
2653 2831 5.221441 TGGTAGCATGTACCATGTCTATGTC 60.221 44.000 17.86 4.23 42.21 3.06
2654 2832 5.011125 GGTAGCATGTACCATGTCTATGTCT 59.989 44.000 15.49 0.00 37.53 3.41
2655 2833 6.208797 GGTAGCATGTACCATGTCTATGTCTA 59.791 42.308 15.49 0.00 37.53 2.59
2656 2834 6.924913 AGCATGTACCATGTCTATGTCTAT 57.075 37.500 6.13 0.00 32.21 1.98
2657 2835 6.695429 AGCATGTACCATGTCTATGTCTATG 58.305 40.000 6.13 0.00 32.21 2.23
2658 2836 5.871524 GCATGTACCATGTCTATGTCTATGG 59.128 44.000 6.13 0.00 44.38 2.74
2664 2842 6.266168 CCATGTCTATGTCTATGGTCTCTC 57.734 45.833 0.00 0.00 36.25 3.20
2665 2843 6.009589 CCATGTCTATGTCTATGGTCTCTCT 58.990 44.000 0.00 0.00 36.25 3.10
2666 2844 6.493115 CCATGTCTATGTCTATGGTCTCTCTT 59.507 42.308 0.00 0.00 36.25 2.85
2667 2845 7.309133 CCATGTCTATGTCTATGGTCTCTCTTC 60.309 44.444 0.00 0.00 36.25 2.87
2668 2846 5.760743 TGTCTATGTCTATGGTCTCTCTTCG 59.239 44.000 0.00 0.00 0.00 3.79
2669 2847 5.180492 GTCTATGTCTATGGTCTCTCTTCGG 59.820 48.000 0.00 0.00 0.00 4.30
2670 2848 3.367646 TGTCTATGGTCTCTCTTCGGT 57.632 47.619 0.00 0.00 0.00 4.69
2671 2849 4.498894 TGTCTATGGTCTCTCTTCGGTA 57.501 45.455 0.00 0.00 0.00 4.02
2672 2850 4.851843 TGTCTATGGTCTCTCTTCGGTAA 58.148 43.478 0.00 0.00 0.00 2.85
2673 2851 4.639310 TGTCTATGGTCTCTCTTCGGTAAC 59.361 45.833 0.00 0.00 0.00 2.50
2674 2852 4.036616 GTCTATGGTCTCTCTTCGGTAACC 59.963 50.000 0.00 0.00 0.00 2.85
2675 2853 2.297698 TGGTCTCTCTTCGGTAACCA 57.702 50.000 0.00 0.00 34.54 3.67
2676 2854 2.816411 TGGTCTCTCTTCGGTAACCAT 58.184 47.619 0.00 0.00 32.08 3.55
2677 2855 2.758979 TGGTCTCTCTTCGGTAACCATC 59.241 50.000 0.00 0.00 32.08 3.51
2678 2856 2.223525 GGTCTCTCTTCGGTAACCATCG 60.224 54.545 0.00 0.00 0.00 3.84
2679 2857 2.422832 GTCTCTCTTCGGTAACCATCGT 59.577 50.000 0.00 0.00 0.00 3.73
2680 2858 2.681848 TCTCTCTTCGGTAACCATCGTC 59.318 50.000 0.00 0.00 0.00 4.20
2681 2859 2.683867 CTCTCTTCGGTAACCATCGTCT 59.316 50.000 0.00 0.00 0.00 4.18
2682 2860 3.875727 CTCTCTTCGGTAACCATCGTCTA 59.124 47.826 0.00 0.00 0.00 2.59
2683 2861 3.875727 TCTCTTCGGTAACCATCGTCTAG 59.124 47.826 0.00 0.00 0.00 2.43
2684 2862 2.947652 TCTTCGGTAACCATCGTCTAGG 59.052 50.000 0.00 0.00 0.00 3.02
2685 2863 1.683943 TCGGTAACCATCGTCTAGGG 58.316 55.000 0.00 0.00 34.25 3.53
2686 2864 1.212688 TCGGTAACCATCGTCTAGGGA 59.787 52.381 0.00 0.00 31.73 4.20
2687 2865 2.026641 CGGTAACCATCGTCTAGGGAA 58.973 52.381 0.00 0.00 31.73 3.97
2688 2866 2.223665 CGGTAACCATCGTCTAGGGAAC 60.224 54.545 0.00 0.00 31.73 3.62
2690 2868 3.450096 GGTAACCATCGTCTAGGGAACTT 59.550 47.826 0.00 0.00 43.67 2.66
2693 2871 3.705051 ACCATCGTCTAGGGAACTTACA 58.295 45.455 0.00 0.00 43.67 2.41
2700 2878 4.379603 CGTCTAGGGAACTTACAGTCACTG 60.380 50.000 2.22 2.22 43.67 3.66
2718 2896 3.508840 GCGGGCAATCGTTGGGAG 61.509 66.667 0.00 0.00 0.00 4.30
2765 2943 2.095461 GATGAAGGTTCAGCTTTCCCC 58.905 52.381 0.68 0.00 40.26 4.81
2782 2960 2.512056 TCCCCACAACCCGATGAATTAT 59.488 45.455 0.00 0.00 0.00 1.28
2801 2979 0.984230 TGCTGGCAGCTTACTAGGTT 59.016 50.000 36.50 0.00 42.97 3.50
2874 3052 5.510520 CCTCATTCCTACCTCTAAGCATGTC 60.511 48.000 0.00 0.00 0.00 3.06
2889 3067 2.233271 CATGTCTGGGCTGTCAAAGTT 58.767 47.619 0.00 0.00 0.00 2.66
2890 3068 2.435372 TGTCTGGGCTGTCAAAGTTT 57.565 45.000 0.00 0.00 0.00 2.66
2892 3070 1.609072 GTCTGGGCTGTCAAAGTTTCC 59.391 52.381 0.00 0.00 0.00 3.13
2991 3169 4.477581 TGGACAGGATCTACTAGGTGTAGT 59.522 45.833 0.00 0.00 46.50 2.73
3001 3179 9.339850 GATCTACTAGGTGTAGTTTCTGTGATA 57.660 37.037 0.00 0.00 46.50 2.15
3031 3211 6.932400 TGAGACGATTAAGCACCTTTTTCTTA 59.068 34.615 0.00 0.00 0.00 2.10
3097 3277 4.497291 TTCAATATTACGCCACCTCCTT 57.503 40.909 0.00 0.00 0.00 3.36
3099 3279 3.139077 CAATATTACGCCACCTCCTTCC 58.861 50.000 0.00 0.00 0.00 3.46
3114 3294 4.025145 CCTCCTTCCATTAACGCGTTATTC 60.025 45.833 30.36 0.00 0.00 1.75
3192 3372 0.577269 GCGCGTTGATGTGGTCTATC 59.423 55.000 8.43 0.00 0.00 2.08
3204 3384 3.209410 GTGGTCTATCTGGAATTGCAGG 58.791 50.000 24.63 10.69 0.00 4.85
3227 3407 9.492973 CAGGAATGATTTGGTTTTTAACAGAAT 57.507 29.630 0.00 0.00 0.00 2.40
3261 3441 3.780804 TTTTTGCAGGCACTACTAGGA 57.219 42.857 0.00 0.00 36.02 2.94
3262 3442 3.780804 TTTTGCAGGCACTACTAGGAA 57.219 42.857 0.00 0.00 36.02 3.36
3263 3443 3.780804 TTTGCAGGCACTACTAGGAAA 57.219 42.857 0.00 0.00 36.02 3.13
3264 3444 3.780804 TTGCAGGCACTACTAGGAAAA 57.219 42.857 0.00 0.00 36.02 2.29
3265 3445 3.334583 TGCAGGCACTACTAGGAAAAG 57.665 47.619 0.00 0.00 36.02 2.27
3266 3446 2.027192 TGCAGGCACTACTAGGAAAAGG 60.027 50.000 0.00 0.00 36.02 3.11
3267 3447 2.633488 CAGGCACTACTAGGAAAAGGC 58.367 52.381 0.00 0.00 36.02 4.35
3268 3448 1.560146 AGGCACTACTAGGAAAAGGCC 59.440 52.381 0.00 0.00 36.02 5.19
3269 3449 1.560146 GGCACTACTAGGAAAAGGCCT 59.440 52.381 0.00 0.00 42.15 5.19
3270 3450 2.770232 GGCACTACTAGGAAAAGGCCTA 59.230 50.000 5.16 0.00 39.50 3.93
3271 3451 3.431905 GGCACTACTAGGAAAAGGCCTAC 60.432 52.174 5.16 0.00 39.50 3.18
3272 3452 3.451540 GCACTACTAGGAAAAGGCCTACT 59.548 47.826 5.16 4.94 39.50 2.57
3273 3453 4.648307 GCACTACTAGGAAAAGGCCTACTA 59.352 45.833 5.16 5.95 39.50 1.82
3274 3454 5.128335 GCACTACTAGGAAAAGGCCTACTAA 59.872 44.000 5.16 0.00 39.50 2.24
3275 3455 6.183360 GCACTACTAGGAAAAGGCCTACTAAT 60.183 42.308 5.16 0.00 39.50 1.73
3276 3456 7.210873 CACTACTAGGAAAAGGCCTACTAATG 58.789 42.308 5.16 0.00 39.50 1.90
3277 3457 5.632034 ACTAGGAAAAGGCCTACTAATGG 57.368 43.478 5.16 0.00 39.50 3.16
3283 3463 4.857251 GCCTACTAATGGCGCACT 57.143 55.556 10.83 0.00 41.03 4.40
3284 3464 2.311294 GCCTACTAATGGCGCACTG 58.689 57.895 10.83 0.00 41.03 3.66
3285 3465 1.160329 GCCTACTAATGGCGCACTGG 61.160 60.000 10.83 0.00 41.03 4.00
3286 3466 0.178068 CCTACTAATGGCGCACTGGT 59.822 55.000 10.83 3.08 0.00 4.00
3287 3467 1.406887 CCTACTAATGGCGCACTGGTT 60.407 52.381 10.83 0.00 0.00 3.67
3288 3468 2.356135 CTACTAATGGCGCACTGGTTT 58.644 47.619 10.83 0.00 0.00 3.27
3289 3469 1.616159 ACTAATGGCGCACTGGTTTT 58.384 45.000 10.83 0.00 0.00 2.43
3290 3470 1.269448 ACTAATGGCGCACTGGTTTTG 59.731 47.619 10.83 0.00 0.00 2.44
3291 3471 0.038709 TAATGGCGCACTGGTTTTGC 60.039 50.000 10.83 0.00 36.57 3.68
3292 3472 2.713927 AATGGCGCACTGGTTTTGCC 62.714 55.000 10.83 0.00 45.91 4.52
3293 3473 3.605664 GGCGCACTGGTTTTGCCT 61.606 61.111 10.83 0.00 42.44 4.75
3294 3474 2.265182 GGCGCACTGGTTTTGCCTA 61.265 57.895 10.83 0.00 42.44 3.93
3295 3475 1.081442 GCGCACTGGTTTTGCCTAC 60.081 57.895 0.30 0.00 36.57 3.18
3296 3476 1.515521 GCGCACTGGTTTTGCCTACT 61.516 55.000 0.30 0.00 36.57 2.57
3297 3477 1.803334 CGCACTGGTTTTGCCTACTA 58.197 50.000 0.00 0.00 36.57 1.82
3298 3478 2.147958 CGCACTGGTTTTGCCTACTAA 58.852 47.619 0.00 0.00 36.57 2.24
3299 3479 2.747446 CGCACTGGTTTTGCCTACTAAT 59.253 45.455 0.00 0.00 36.57 1.73
3300 3480 3.426159 CGCACTGGTTTTGCCTACTAATG 60.426 47.826 0.00 0.00 36.57 1.90
3301 3481 3.119495 GCACTGGTTTTGCCTACTAATGG 60.119 47.826 0.00 0.00 38.35 3.16
3310 3490 1.804748 GCCTACTAATGGCGCATTACC 59.195 52.381 10.83 0.00 41.03 2.85
3311 3491 2.808933 GCCTACTAATGGCGCATTACCA 60.809 50.000 10.83 0.00 41.03 3.25
3312 3492 3.067106 CCTACTAATGGCGCATTACCAG 58.933 50.000 10.83 8.65 41.46 4.00
3313 3493 2.710096 ACTAATGGCGCATTACCAGT 57.290 45.000 10.83 5.33 41.46 4.00
3314 3494 2.288666 ACTAATGGCGCATTACCAGTG 58.711 47.619 10.83 2.58 41.46 3.66
3315 3495 1.002468 CTAATGGCGCATTACCAGTGC 60.002 52.381 10.83 0.00 41.46 4.40
3320 3500 3.513225 GCATTACCAGTGCGCCAT 58.487 55.556 4.18 0.00 32.29 4.40
3321 3501 1.809207 GCATTACCAGTGCGCCATT 59.191 52.632 4.18 0.00 32.29 3.16
3322 3502 1.021202 GCATTACCAGTGCGCCATTA 58.979 50.000 4.18 0.00 32.29 1.90
3323 3503 1.002468 GCATTACCAGTGCGCCATTAG 60.002 52.381 4.18 0.00 32.29 1.73
3324 3504 2.288666 CATTACCAGTGCGCCATTAGT 58.711 47.619 4.18 0.00 0.00 2.24
3325 3505 3.462982 CATTACCAGTGCGCCATTAGTA 58.537 45.455 4.18 0.00 0.00 1.82
3326 3506 2.882927 TACCAGTGCGCCATTAGTAG 57.117 50.000 4.18 0.00 0.00 2.57
3327 3507 0.462047 ACCAGTGCGCCATTAGTAGC 60.462 55.000 4.18 0.00 0.00 3.58
3328 3508 0.461870 CCAGTGCGCCATTAGTAGCA 60.462 55.000 4.18 0.00 37.26 3.49
3330 3510 4.102561 TGCGCCATTAGTAGCACG 57.897 55.556 4.18 0.00 34.39 5.34
3331 3511 2.171079 TGCGCCATTAGTAGCACGC 61.171 57.895 4.18 0.00 46.05 5.34
3332 3512 2.882366 GCGCCATTAGTAGCACGCC 61.882 63.158 0.00 0.00 40.43 5.68
3333 3513 1.520564 CGCCATTAGTAGCACGCCA 60.521 57.895 0.00 0.00 0.00 5.69
3334 3514 1.762222 CGCCATTAGTAGCACGCCAC 61.762 60.000 0.00 0.00 0.00 5.01
3335 3515 0.462047 GCCATTAGTAGCACGCCACT 60.462 55.000 0.00 0.00 0.00 4.00
3336 3516 1.202486 GCCATTAGTAGCACGCCACTA 60.202 52.381 0.00 0.00 0.00 2.74
3337 3517 2.743938 CCATTAGTAGCACGCCACTAG 58.256 52.381 0.00 0.00 0.00 2.57
3338 3518 2.100916 CCATTAGTAGCACGCCACTAGT 59.899 50.000 0.00 0.00 0.00 2.57
3339 3519 3.317149 CCATTAGTAGCACGCCACTAGTA 59.683 47.826 0.00 0.00 0.00 1.82
3340 3520 4.022242 CCATTAGTAGCACGCCACTAGTAT 60.022 45.833 0.00 0.00 0.00 2.12
3341 3521 5.182570 CCATTAGTAGCACGCCACTAGTATA 59.817 44.000 0.00 0.00 0.00 1.47
3342 3522 6.127703 CCATTAGTAGCACGCCACTAGTATAT 60.128 42.308 0.00 0.00 0.00 0.86
3343 3523 6.492007 TTAGTAGCACGCCACTAGTATATC 57.508 41.667 0.00 0.00 0.00 1.63
3344 3524 4.653868 AGTAGCACGCCACTAGTATATCT 58.346 43.478 0.00 0.00 0.00 1.98
3345 3525 5.071370 AGTAGCACGCCACTAGTATATCTT 58.929 41.667 0.00 0.00 0.00 2.40
3346 3526 6.236409 AGTAGCACGCCACTAGTATATCTTA 58.764 40.000 0.00 0.00 0.00 2.10
3347 3527 5.373981 AGCACGCCACTAGTATATCTTAC 57.626 43.478 0.00 0.00 0.00 2.34
3348 3528 5.071370 AGCACGCCACTAGTATATCTTACT 58.929 41.667 0.00 0.00 0.00 2.24
3349 3529 6.236409 AGCACGCCACTAGTATATCTTACTA 58.764 40.000 0.00 0.00 0.00 1.82
3350 3530 6.713903 AGCACGCCACTAGTATATCTTACTAA 59.286 38.462 0.00 0.00 30.55 2.24
3351 3531 7.393796 AGCACGCCACTAGTATATCTTACTAAT 59.606 37.037 0.00 0.00 30.55 1.73
3352 3532 7.485277 GCACGCCACTAGTATATCTTACTAATG 59.515 40.741 0.00 0.00 29.90 1.90
3353 3533 7.968956 CACGCCACTAGTATATCTTACTAATGG 59.031 40.741 13.32 13.32 45.24 3.16
3356 3536 6.973474 CCACTAGTATATCTTACTAATGGCGC 59.027 42.308 0.00 0.00 39.52 6.53
3357 3537 7.362660 CCACTAGTATATCTTACTAATGGCGCA 60.363 40.741 10.83 0.00 39.52 6.09
3358 3538 7.485277 CACTAGTATATCTTACTAATGGCGCAC 59.515 40.741 10.83 0.00 30.55 5.34
3359 3539 5.721232 AGTATATCTTACTAATGGCGCACC 58.279 41.667 10.83 0.00 0.00 5.01
3375 3555 3.226884 ACCACAGGTGCGTCATTAC 57.773 52.632 0.00 0.00 32.98 1.89
3376 3556 0.685097 ACCACAGGTGCGTCATTACT 59.315 50.000 0.00 0.00 32.98 2.24
3377 3557 1.897133 ACCACAGGTGCGTCATTACTA 59.103 47.619 0.00 0.00 32.98 1.82
3378 3558 2.094182 ACCACAGGTGCGTCATTACTAG 60.094 50.000 0.00 0.00 32.98 2.57
3379 3559 2.094182 CCACAGGTGCGTCATTACTAGT 60.094 50.000 0.00 0.00 0.00 2.57
3380 3560 3.585862 CACAGGTGCGTCATTACTAGTT 58.414 45.455 0.00 0.00 0.00 2.24
3381 3561 3.367932 CACAGGTGCGTCATTACTAGTTG 59.632 47.826 0.00 0.00 0.00 3.16
3382 3562 2.930040 CAGGTGCGTCATTACTAGTTGG 59.070 50.000 0.00 0.00 0.00 3.77
3383 3563 2.565834 AGGTGCGTCATTACTAGTTGGT 59.434 45.455 0.00 0.00 0.00 3.67
3384 3564 2.671396 GGTGCGTCATTACTAGTTGGTG 59.329 50.000 0.00 0.00 0.00 4.17
3385 3565 2.093783 GTGCGTCATTACTAGTTGGTGC 59.906 50.000 0.00 3.08 0.00 5.01
3386 3566 1.323534 GCGTCATTACTAGTTGGTGCG 59.676 52.381 0.00 2.64 0.00 5.34
3387 3567 1.323534 CGTCATTACTAGTTGGTGCGC 59.676 52.381 0.00 0.00 0.00 6.09
3388 3568 1.664151 GTCATTACTAGTTGGTGCGCC 59.336 52.381 10.11 10.11 0.00 6.53
3389 3569 1.276705 TCATTACTAGTTGGTGCGCCA 59.723 47.619 16.89 16.89 44.38 5.69
3390 3570 2.093181 TCATTACTAGTTGGTGCGCCAT 60.093 45.455 21.95 8.96 45.56 4.40
3391 3571 2.483014 TTACTAGTTGGTGCGCCATT 57.517 45.000 21.95 14.19 45.56 3.16
3392 3572 3.613494 TTACTAGTTGGTGCGCCATTA 57.387 42.857 21.95 14.57 45.56 1.90
3393 3573 2.024176 ACTAGTTGGTGCGCCATTAG 57.976 50.000 21.95 24.18 45.56 1.73
3394 3574 1.278127 ACTAGTTGGTGCGCCATTAGT 59.722 47.619 26.32 26.32 45.56 2.24
3395 3575 2.498481 ACTAGTTGGTGCGCCATTAGTA 59.502 45.455 28.75 18.68 45.56 1.82
3396 3576 2.710096 AGTTGGTGCGCCATTAGTAT 57.290 45.000 21.95 0.00 45.56 2.12
3397 3577 2.288666 AGTTGGTGCGCCATTAGTATG 58.711 47.619 21.95 0.00 45.56 2.39
3398 3578 2.014128 GTTGGTGCGCCATTAGTATGT 58.986 47.619 21.95 0.00 45.56 2.29
3399 3579 3.118555 AGTTGGTGCGCCATTAGTATGTA 60.119 43.478 21.95 0.00 45.56 2.29
3400 3580 3.545366 TGGTGCGCCATTAGTATGTAA 57.455 42.857 16.89 0.00 40.46 2.41
3401 3581 3.199677 TGGTGCGCCATTAGTATGTAAC 58.800 45.455 16.89 0.00 40.46 2.50
3402 3582 3.199677 GGTGCGCCATTAGTATGTAACA 58.800 45.455 12.58 0.00 34.09 2.41
3403 3583 3.247648 GGTGCGCCATTAGTATGTAACAG 59.752 47.826 12.58 0.00 34.09 3.16
3404 3584 2.869801 TGCGCCATTAGTATGTAACAGC 59.130 45.455 4.18 0.00 0.00 4.40
3405 3585 2.869801 GCGCCATTAGTATGTAACAGCA 59.130 45.455 0.00 0.00 0.00 4.41
3406 3586 3.498397 GCGCCATTAGTATGTAACAGCAT 59.502 43.478 0.00 0.00 0.00 3.79
3407 3587 4.611355 GCGCCATTAGTATGTAACAGCATG 60.611 45.833 0.00 0.00 46.00 4.06
3408 3588 4.611355 CGCCATTAGTATGTAACAGCATGC 60.611 45.833 10.51 10.51 42.53 4.06
3409 3589 4.611355 GCCATTAGTATGTAACAGCATGCG 60.611 45.833 13.01 9.99 42.53 4.73
3410 3590 4.457810 CATTAGTATGTAACAGCATGCGC 58.542 43.478 13.01 0.00 42.53 6.09
3411 3591 1.299541 AGTATGTAACAGCATGCGCC 58.700 50.000 13.01 0.09 42.53 6.53
3412 3592 1.013596 GTATGTAACAGCATGCGCCA 58.986 50.000 13.01 6.17 42.53 5.69
3413 3593 1.603802 GTATGTAACAGCATGCGCCAT 59.396 47.619 13.01 12.80 42.53 4.40
3414 3594 1.105457 ATGTAACAGCATGCGCCATT 58.895 45.000 13.01 7.94 42.53 3.16
3415 3595 1.743996 TGTAACAGCATGCGCCATTA 58.256 45.000 13.01 6.94 42.53 1.90
3416 3596 1.670295 TGTAACAGCATGCGCCATTAG 59.330 47.619 13.01 0.25 42.53 1.73
3417 3597 1.670811 GTAACAGCATGCGCCATTAGT 59.329 47.619 13.01 0.88 42.53 2.24
3418 3598 0.452987 AACAGCATGCGCCATTAGTG 59.547 50.000 13.01 4.83 42.53 2.74
3419 3599 0.677731 ACAGCATGCGCCATTAGTGT 60.678 50.000 13.01 5.54 42.53 3.55
3420 3600 0.248336 CAGCATGCGCCATTAGTGTG 60.248 55.000 13.01 0.00 39.83 3.82
3421 3601 1.587088 GCATGCGCCATTAGTGTGC 60.587 57.895 4.18 0.00 0.00 4.57
3422 3602 1.064621 CATGCGCCATTAGTGTGCC 59.935 57.895 4.18 0.00 0.00 5.01
3423 3603 1.077501 ATGCGCCATTAGTGTGCCT 60.078 52.632 4.18 0.00 0.00 4.75
3424 3604 0.680921 ATGCGCCATTAGTGTGCCTT 60.681 50.000 4.18 0.00 0.00 4.35
3425 3605 1.305219 TGCGCCATTAGTGTGCCTTC 61.305 55.000 4.18 0.00 0.00 3.46
3426 3606 1.993369 GCGCCATTAGTGTGCCTTCC 61.993 60.000 0.00 0.00 0.00 3.46
3427 3607 1.705337 CGCCATTAGTGTGCCTTCCG 61.705 60.000 0.00 0.00 0.00 4.30
3428 3608 1.376609 GCCATTAGTGTGCCTTCCGG 61.377 60.000 0.00 0.00 0.00 5.14
3429 3609 0.748005 CCATTAGTGTGCCTTCCGGG 60.748 60.000 0.00 0.00 38.36 5.73
3430 3610 0.748005 CATTAGTGTGCCTTCCGGGG 60.748 60.000 0.00 0.00 35.12 5.73
3431 3611 1.921869 ATTAGTGTGCCTTCCGGGGG 61.922 60.000 0.00 5.73 35.12 5.40
3445 3625 2.912714 GGGGGCCATACGTAAGCA 59.087 61.111 19.06 0.00 45.62 3.91
3446 3626 1.454539 GGGGGCCATACGTAAGCAT 59.545 57.895 19.06 0.00 45.62 3.79
3447 3627 0.889186 GGGGGCCATACGTAAGCATG 60.889 60.000 19.06 6.23 40.88 4.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.067142 GCCACATCGTACTTCACCTGA 60.067 52.381 0.00 0.00 0.00 3.86
2 3 1.359848 GCCACATCGTACTTCACCTG 58.640 55.000 0.00 0.00 0.00 4.00
4 5 0.108992 TCGCCACATCGTACTTCACC 60.109 55.000 0.00 0.00 0.00 4.02
5 6 1.654105 CTTCGCCACATCGTACTTCAC 59.346 52.381 0.00 0.00 0.00 3.18
6 7 1.403647 CCTTCGCCACATCGTACTTCA 60.404 52.381 0.00 0.00 0.00 3.02
7 8 1.278238 CCTTCGCCACATCGTACTTC 58.722 55.000 0.00 0.00 0.00 3.01
8 9 0.606604 ACCTTCGCCACATCGTACTT 59.393 50.000 0.00 0.00 0.00 2.24
9 10 1.466856 TACCTTCGCCACATCGTACT 58.533 50.000 0.00 0.00 0.00 2.73
10 11 2.282701 TTACCTTCGCCACATCGTAC 57.717 50.000 0.00 0.00 0.00 3.67
15 16 6.238648 GCATTATTAGTTTACCTTCGCCACAT 60.239 38.462 0.00 0.00 0.00 3.21
81 110 3.365976 ACGGTGCGTGTACTTTTCA 57.634 47.368 0.00 0.00 39.18 2.69
171 200 0.918983 CATAAGGAAGCCAGGTCCCA 59.081 55.000 0.00 0.00 35.59 4.37
218 247 0.393077 GGGCATACCACTATGTCGCT 59.607 55.000 0.00 0.00 36.02 4.93
224 253 1.427072 GGGGCAGGGCATACCACTAT 61.427 60.000 0.00 0.00 43.89 2.12
225 254 2.076184 GGGGCAGGGCATACCACTA 61.076 63.158 0.00 0.00 43.89 2.74
344 373 2.878580 CGCTGGGTGTATGTTTACGTA 58.121 47.619 0.00 0.00 0.00 3.57
345 374 1.717194 CGCTGGGTGTATGTTTACGT 58.283 50.000 0.00 0.00 0.00 3.57
350 379 1.377202 CCAGCGCTGGGTGTATGTT 60.377 57.895 42.81 0.00 46.81 2.71
368 397 2.087646 GACTCTTTTCCATGGGAGCAC 58.912 52.381 13.02 5.06 31.21 4.40
416 445 4.157246 GTTCCCCACAAAATAAGGAAGGT 58.843 43.478 0.00 0.00 37.29 3.50
419 454 5.068215 TCTGTTCCCCACAAAATAAGGAA 57.932 39.130 0.00 0.00 33.87 3.36
422 457 5.067805 GGCTATCTGTTCCCCACAAAATAAG 59.932 44.000 0.00 0.00 33.87 1.73
426 461 2.556559 GGGCTATCTGTTCCCCACAAAA 60.557 50.000 0.00 0.00 37.46 2.44
437 472 2.915604 CCATATCCCTTGGGCTATCTGT 59.084 50.000 0.00 0.00 0.00 3.41
438 473 3.641434 CCATATCCCTTGGGCTATCTG 57.359 52.381 0.00 0.00 0.00 2.90
453 495 7.049754 GCAAAGGAAAAACATCATTCCCATAT 58.950 34.615 1.10 0.00 45.08 1.78
454 496 6.213195 AGCAAAGGAAAAACATCATTCCCATA 59.787 34.615 1.10 0.00 45.08 2.74
495 541 2.809601 CAGCCACCGCTCGTACAC 60.810 66.667 0.00 0.00 43.95 2.90
504 550 3.386768 ACTTGTATATAGCAGCCACCG 57.613 47.619 0.00 0.00 0.00 4.94
521 582 8.747471 GGGAGTAGTAGAACAAACATAGTACTT 58.253 37.037 0.00 0.00 36.34 2.24
528 589 6.017192 TCAGAGGGAGTAGTAGAACAAACAT 58.983 40.000 0.00 0.00 0.00 2.71
574 638 9.898152 TGATCAGATAGATTCGTATCTAGACAT 57.102 33.333 15.69 2.00 44.44 3.06
590 655 7.391275 TGCAATCTACTCTCTCTGATCAGATAG 59.609 40.741 25.30 25.17 36.76 2.08
604 669 8.621532 TGTAAGACATTTTTGCAATCTACTCT 57.378 30.769 0.00 0.00 0.00 3.24
616 681 9.003658 CCTCTGTCTACAATGTAAGACATTTTT 57.996 33.333 18.67 0.00 45.80 1.94
637 702 6.941436 ACCCGAGTAGATTATACTTACCTCTG 59.059 42.308 0.00 0.00 0.00 3.35
735 800 2.804647 CTGCACACACGATAACCGATA 58.195 47.619 0.00 0.00 41.76 2.92
736 801 1.640428 CTGCACACACGATAACCGAT 58.360 50.000 0.00 0.00 41.76 4.18
737 802 1.011968 GCTGCACACACGATAACCGA 61.012 55.000 0.00 0.00 41.76 4.69
739 804 1.156736 AAGCTGCACACACGATAACC 58.843 50.000 1.02 0.00 0.00 2.85
740 805 2.032030 ACAAAGCTGCACACACGATAAC 60.032 45.455 1.02 0.00 0.00 1.89
741 806 2.217750 ACAAAGCTGCACACACGATAA 58.782 42.857 1.02 0.00 0.00 1.75
746 811 3.461843 GCTACAAAGCTGCACACAC 57.538 52.632 1.02 0.00 45.85 3.82
943 1009 1.340568 GTAGTCCCCAACGCCTCTATC 59.659 57.143 0.00 0.00 0.00 2.08
1122 1246 3.499737 CGTCCCGCAATGAGGCAC 61.500 66.667 0.00 0.00 0.00 5.01
1679 1815 0.609406 GAACTGTTCCTCAAGGCCCC 60.609 60.000 9.38 0.00 34.44 5.80
1686 1822 0.317160 ATGCGACGAACTGTTCCTCA 59.683 50.000 14.48 7.78 0.00 3.86
1739 1875 3.717294 GGAAGAAGGGCCCGAGCA 61.717 66.667 18.44 0.00 42.56 4.26
1800 1936 1.078848 GTCCAGCCAAGCGATGACT 60.079 57.895 0.00 0.00 0.00 3.41
1984 2120 2.964389 GCGCATCTCGAGGGCTTC 60.964 66.667 21.87 12.93 41.20 3.86
2176 2312 4.728102 TACGTCCACCGCAAGCCG 62.728 66.667 0.00 0.00 41.42 5.52
2228 2364 3.733960 GGTCCACGGCCTTTTCGC 61.734 66.667 0.00 0.00 0.00 4.70
2384 2520 3.062234 GCGTAATAGCAGTGTCAGGTTTC 59.938 47.826 0.00 0.00 37.05 2.78
2405 2541 2.758089 CCACTCCGCATGAAGCTGC 61.758 63.158 0.00 0.00 42.61 5.25
2437 2573 3.831715 AGCAGAGCAAACGGAATTAAC 57.168 42.857 0.00 0.00 0.00 2.01
2438 2574 3.938963 CCTAGCAGAGCAAACGGAATTAA 59.061 43.478 0.00 0.00 0.00 1.40
2439 2575 3.055385 ACCTAGCAGAGCAAACGGAATTA 60.055 43.478 0.00 0.00 0.00 1.40
2441 2577 1.279271 ACCTAGCAGAGCAAACGGAAT 59.721 47.619 0.00 0.00 0.00 3.01
2443 2579 0.037326 CACCTAGCAGAGCAAACGGA 60.037 55.000 0.00 0.00 0.00 4.69
2444 2580 0.037326 TCACCTAGCAGAGCAAACGG 60.037 55.000 0.00 0.00 0.00 4.44
2445 2581 1.728971 CTTCACCTAGCAGAGCAAACG 59.271 52.381 0.00 0.00 0.00 3.60
2446 2582 2.481952 CACTTCACCTAGCAGAGCAAAC 59.518 50.000 0.00 0.00 0.00 2.93
2447 2583 2.104792 ACACTTCACCTAGCAGAGCAAA 59.895 45.455 0.00 0.00 0.00 3.68
2479 2635 8.316946 TGAGCATTGATACTAGGGATATTCTTG 58.683 37.037 0.00 0.00 0.00 3.02
2482 2638 8.535335 TCTTGAGCATTGATACTAGGGATATTC 58.465 37.037 0.00 0.00 0.00 1.75
2483 2639 8.441311 TCTTGAGCATTGATACTAGGGATATT 57.559 34.615 0.00 0.00 0.00 1.28
2484 2640 8.441311 TTCTTGAGCATTGATACTAGGGATAT 57.559 34.615 0.00 0.00 0.00 1.63
2486 2642 6.753913 TTCTTGAGCATTGATACTAGGGAT 57.246 37.500 0.00 0.00 0.00 3.85
2487 2643 6.753913 ATTCTTGAGCATTGATACTAGGGA 57.246 37.500 0.00 0.00 0.00 4.20
2488 2644 7.768120 GGATATTCTTGAGCATTGATACTAGGG 59.232 40.741 0.00 0.00 0.00 3.53
2489 2645 7.768120 GGGATATTCTTGAGCATTGATACTAGG 59.232 40.741 0.00 0.00 0.00 3.02
2537 2715 1.368374 TGAGGTGAAGGGGGTAAAGG 58.632 55.000 0.00 0.00 0.00 3.11
2540 2718 2.844348 GAGAATGAGGTGAAGGGGGTAA 59.156 50.000 0.00 0.00 0.00 2.85
2541 2719 2.478292 GAGAATGAGGTGAAGGGGGTA 58.522 52.381 0.00 0.00 0.00 3.69
2542 2720 1.290134 GAGAATGAGGTGAAGGGGGT 58.710 55.000 0.00 0.00 0.00 4.95
2543 2721 0.179000 CGAGAATGAGGTGAAGGGGG 59.821 60.000 0.00 0.00 0.00 5.40
2544 2722 0.462759 GCGAGAATGAGGTGAAGGGG 60.463 60.000 0.00 0.00 0.00 4.79
2545 2723 0.462759 GGCGAGAATGAGGTGAAGGG 60.463 60.000 0.00 0.00 0.00 3.95
2546 2724 0.250234 TGGCGAGAATGAGGTGAAGG 59.750 55.000 0.00 0.00 0.00 3.46
2547 2725 1.066573 AGTGGCGAGAATGAGGTGAAG 60.067 52.381 0.00 0.00 0.00 3.02
2548 2726 0.976641 AGTGGCGAGAATGAGGTGAA 59.023 50.000 0.00 0.00 0.00 3.18
2549 2727 0.532573 GAGTGGCGAGAATGAGGTGA 59.467 55.000 0.00 0.00 0.00 4.02
2550 2728 0.534412 AGAGTGGCGAGAATGAGGTG 59.466 55.000 0.00 0.00 0.00 4.00
2551 2729 1.270907 AAGAGTGGCGAGAATGAGGT 58.729 50.000 0.00 0.00 0.00 3.85
2552 2730 2.393271 AAAGAGTGGCGAGAATGAGG 57.607 50.000 0.00 0.00 0.00 3.86
2553 2731 6.314896 AGAAAATAAAGAGTGGCGAGAATGAG 59.685 38.462 0.00 0.00 0.00 2.90
2554 2732 6.092670 CAGAAAATAAAGAGTGGCGAGAATGA 59.907 38.462 0.00 0.00 0.00 2.57
2555 2733 6.253746 CAGAAAATAAAGAGTGGCGAGAATG 58.746 40.000 0.00 0.00 0.00 2.67
2556 2734 5.163713 GCAGAAAATAAAGAGTGGCGAGAAT 60.164 40.000 0.00 0.00 0.00 2.40
2557 2735 4.154195 GCAGAAAATAAAGAGTGGCGAGAA 59.846 41.667 0.00 0.00 0.00 2.87
2558 2736 3.684788 GCAGAAAATAAAGAGTGGCGAGA 59.315 43.478 0.00 0.00 0.00 4.04
2559 2737 3.686726 AGCAGAAAATAAAGAGTGGCGAG 59.313 43.478 0.00 0.00 0.00 5.03
2560 2738 3.436704 CAGCAGAAAATAAAGAGTGGCGA 59.563 43.478 0.00 0.00 0.00 5.54
2561 2739 3.189287 ACAGCAGAAAATAAAGAGTGGCG 59.811 43.478 0.00 0.00 0.00 5.69
2562 2740 4.670221 CGACAGCAGAAAATAAAGAGTGGC 60.670 45.833 0.00 0.00 0.00 5.01
2563 2741 4.452455 ACGACAGCAGAAAATAAAGAGTGG 59.548 41.667 0.00 0.00 0.00 4.00
2564 2742 5.597813 ACGACAGCAGAAAATAAAGAGTG 57.402 39.130 0.00 0.00 0.00 3.51
2565 2743 6.704493 TGTAACGACAGCAGAAAATAAAGAGT 59.296 34.615 0.00 0.00 0.00 3.24
2566 2744 7.117241 TGTAACGACAGCAGAAAATAAAGAG 57.883 36.000 0.00 0.00 0.00 2.85
2567 2745 7.485418 TTGTAACGACAGCAGAAAATAAAGA 57.515 32.000 0.00 0.00 36.76 2.52
2568 2746 8.629986 CATTTGTAACGACAGCAGAAAATAAAG 58.370 33.333 0.00 0.00 36.76 1.85
2569 2747 8.132362 ACATTTGTAACGACAGCAGAAAATAAA 58.868 29.630 0.00 0.00 36.76 1.40
2570 2748 7.644490 ACATTTGTAACGACAGCAGAAAATAA 58.356 30.769 0.00 0.00 36.76 1.40
2571 2749 7.197071 ACATTTGTAACGACAGCAGAAAATA 57.803 32.000 0.00 0.00 36.76 1.40
2572 2750 6.072112 ACATTTGTAACGACAGCAGAAAAT 57.928 33.333 0.00 0.00 36.76 1.82
2573 2751 5.493133 ACATTTGTAACGACAGCAGAAAA 57.507 34.783 0.00 0.00 36.76 2.29
2574 2752 5.756347 ACTACATTTGTAACGACAGCAGAAA 59.244 36.000 0.00 0.00 36.76 2.52
2575 2753 5.294356 ACTACATTTGTAACGACAGCAGAA 58.706 37.500 0.00 0.00 36.76 3.02
2576 2754 4.878439 ACTACATTTGTAACGACAGCAGA 58.122 39.130 0.00 0.00 36.76 4.26
2577 2755 5.176774 TCAACTACATTTGTAACGACAGCAG 59.823 40.000 0.00 0.00 36.76 4.24
2578 2756 5.051153 TCAACTACATTTGTAACGACAGCA 58.949 37.500 0.00 0.00 36.76 4.41
2579 2757 5.585500 TCAACTACATTTGTAACGACAGC 57.415 39.130 0.00 0.00 36.76 4.40
2584 2762 9.632969 GCAAGTATATCAACTACATTTGTAACG 57.367 33.333 0.00 0.00 0.00 3.18
2592 2770 9.534565 CAACACTAGCAAGTATATCAACTACAT 57.465 33.333 0.00 0.00 33.48 2.29
2593 2771 8.528643 ACAACACTAGCAAGTATATCAACTACA 58.471 33.333 0.00 0.00 33.48 2.74
2594 2772 8.928270 ACAACACTAGCAAGTATATCAACTAC 57.072 34.615 0.00 0.00 33.48 2.73
2602 2780 9.884636 AACATGAATACAACACTAGCAAGTATA 57.115 29.630 0.00 0.00 33.48 1.47
2603 2781 8.792830 AACATGAATACAACACTAGCAAGTAT 57.207 30.769 0.00 0.00 33.48 2.12
2604 2782 8.503196 CAAACATGAATACAACACTAGCAAGTA 58.497 33.333 0.00 0.00 33.48 2.24
2605 2783 7.362662 CAAACATGAATACAACACTAGCAAGT 58.637 34.615 0.00 0.00 35.91 3.16
2606 2784 6.803320 CCAAACATGAATACAACACTAGCAAG 59.197 38.462 0.00 0.00 0.00 4.01
2607 2785 6.264292 ACCAAACATGAATACAACACTAGCAA 59.736 34.615 0.00 0.00 0.00 3.91
2608 2786 5.767665 ACCAAACATGAATACAACACTAGCA 59.232 36.000 0.00 0.00 0.00 3.49
2609 2787 6.254281 ACCAAACATGAATACAACACTAGC 57.746 37.500 0.00 0.00 0.00 3.42
2610 2788 7.119116 TGCTACCAAACATGAATACAACACTAG 59.881 37.037 0.00 0.00 0.00 2.57
2611 2789 6.937465 TGCTACCAAACATGAATACAACACTA 59.063 34.615 0.00 0.00 0.00 2.74
2612 2790 5.767665 TGCTACCAAACATGAATACAACACT 59.232 36.000 0.00 0.00 0.00 3.55
2613 2791 6.007936 TGCTACCAAACATGAATACAACAC 57.992 37.500 0.00 0.00 0.00 3.32
2614 2792 6.208402 ACATGCTACCAAACATGAATACAACA 59.792 34.615 9.77 0.00 45.23 3.33
2615 2793 6.620678 ACATGCTACCAAACATGAATACAAC 58.379 36.000 9.77 0.00 45.23 3.32
2616 2794 6.832520 ACATGCTACCAAACATGAATACAA 57.167 33.333 9.77 0.00 45.23 2.41
2617 2795 6.317642 GGTACATGCTACCAAACATGAATACA 59.682 38.462 15.49 0.00 45.23 2.29
2618 2796 6.317642 TGGTACATGCTACCAAACATGAATAC 59.682 38.462 18.89 3.35 45.23 1.89
2619 2797 6.418946 TGGTACATGCTACCAAACATGAATA 58.581 36.000 18.89 0.00 45.23 1.75
2620 2798 5.260424 TGGTACATGCTACCAAACATGAAT 58.740 37.500 18.89 0.00 45.23 2.57
2621 2799 4.657013 TGGTACATGCTACCAAACATGAA 58.343 39.130 18.89 0.98 45.23 2.57
2622 2800 4.293662 TGGTACATGCTACCAAACATGA 57.706 40.909 18.89 1.53 45.23 3.07
2641 2819 6.009589 AGAGAGACCATAGACATAGACATGG 58.990 44.000 0.00 0.00 43.02 3.66
2642 2820 7.523293 AAGAGAGACCATAGACATAGACATG 57.477 40.000 0.00 0.00 38.21 3.21
2643 2821 6.429692 CGAAGAGAGACCATAGACATAGACAT 59.570 42.308 0.00 0.00 0.00 3.06
2644 2822 5.760743 CGAAGAGAGACCATAGACATAGACA 59.239 44.000 0.00 0.00 0.00 3.41
2645 2823 5.180492 CCGAAGAGAGACCATAGACATAGAC 59.820 48.000 0.00 0.00 0.00 2.59
2646 2824 5.163184 ACCGAAGAGAGACCATAGACATAGA 60.163 44.000 0.00 0.00 0.00 1.98
2647 2825 5.067273 ACCGAAGAGAGACCATAGACATAG 58.933 45.833 0.00 0.00 0.00 2.23
2648 2826 5.050126 ACCGAAGAGAGACCATAGACATA 57.950 43.478 0.00 0.00 0.00 2.29
2649 2827 3.904717 ACCGAAGAGAGACCATAGACAT 58.095 45.455 0.00 0.00 0.00 3.06
2650 2828 3.367646 ACCGAAGAGAGACCATAGACA 57.632 47.619 0.00 0.00 0.00 3.41
2651 2829 4.036616 GGTTACCGAAGAGAGACCATAGAC 59.963 50.000 0.00 0.00 0.00 2.59
2652 2830 4.205587 GGTTACCGAAGAGAGACCATAGA 58.794 47.826 0.00 0.00 0.00 1.98
2653 2831 3.952323 TGGTTACCGAAGAGAGACCATAG 59.048 47.826 0.00 0.00 32.60 2.23
2654 2832 3.972133 TGGTTACCGAAGAGAGACCATA 58.028 45.455 0.00 0.00 32.60 2.74
2655 2833 2.816411 TGGTTACCGAAGAGAGACCAT 58.184 47.619 0.00 0.00 32.60 3.55
2656 2834 2.297698 TGGTTACCGAAGAGAGACCA 57.702 50.000 0.00 0.00 34.99 4.02
2657 2835 2.223525 CGATGGTTACCGAAGAGAGACC 60.224 54.545 0.00 0.00 0.00 3.85
2658 2836 2.422832 ACGATGGTTACCGAAGAGAGAC 59.577 50.000 0.00 0.00 0.00 3.36
2659 2837 2.681848 GACGATGGTTACCGAAGAGAGA 59.318 50.000 0.00 0.00 0.00 3.10
2660 2838 2.683867 AGACGATGGTTACCGAAGAGAG 59.316 50.000 0.00 0.00 0.00 3.20
2661 2839 2.719739 AGACGATGGTTACCGAAGAGA 58.280 47.619 0.00 0.00 0.00 3.10
2662 2840 3.003482 CCTAGACGATGGTTACCGAAGAG 59.997 52.174 0.00 0.00 0.00 2.85
2663 2841 2.947652 CCTAGACGATGGTTACCGAAGA 59.052 50.000 0.00 0.00 0.00 2.87
2664 2842 2.034305 CCCTAGACGATGGTTACCGAAG 59.966 54.545 0.00 0.00 0.00 3.79
2665 2843 2.026641 CCCTAGACGATGGTTACCGAA 58.973 52.381 0.00 0.00 0.00 4.30
2666 2844 1.212688 TCCCTAGACGATGGTTACCGA 59.787 52.381 0.00 0.00 0.00 4.69
2667 2845 1.683943 TCCCTAGACGATGGTTACCG 58.316 55.000 0.00 0.00 0.00 4.02
2668 2846 3.029570 AGTTCCCTAGACGATGGTTACC 58.970 50.000 0.00 0.00 0.00 2.85
2669 2847 4.732672 AAGTTCCCTAGACGATGGTTAC 57.267 45.455 0.00 0.00 0.00 2.50
2670 2848 5.263599 TGTAAGTTCCCTAGACGATGGTTA 58.736 41.667 0.00 0.00 0.00 2.85
2671 2849 4.091549 TGTAAGTTCCCTAGACGATGGTT 58.908 43.478 0.00 0.00 0.00 3.67
2672 2850 3.700038 CTGTAAGTTCCCTAGACGATGGT 59.300 47.826 0.00 0.00 0.00 3.55
2673 2851 4.308899 CTGTAAGTTCCCTAGACGATGG 57.691 50.000 0.00 0.00 0.00 3.51
2688 2866 1.741770 GCCCGCCAGTGACTGTAAG 60.742 63.158 12.15 2.24 42.29 2.34
2689 2867 2.046009 TTGCCCGCCAGTGACTGTAA 62.046 55.000 12.15 0.00 0.00 2.41
2690 2868 1.836999 ATTGCCCGCCAGTGACTGTA 61.837 55.000 12.15 0.00 0.00 2.74
2693 2871 2.045926 GATTGCCCGCCAGTGACT 60.046 61.111 0.00 0.00 0.00 3.41
2718 2896 2.548920 CCTAACGAGATGGAGCCATTCC 60.549 54.545 3.11 0.00 46.98 3.01
2765 2943 3.243168 CCAGCATAATTCATCGGGTTGTG 60.243 47.826 0.00 0.00 0.00 3.33
2782 2960 0.984230 AACCTAGTAAGCTGCCAGCA 59.016 50.000 20.53 0.36 45.56 4.41
2801 2979 9.295825 ACATTGATTTAACTGTGAATACTCCAA 57.704 29.630 0.00 0.00 0.00 3.53
2847 3025 3.244044 GCTTAGAGGTAGGAATGAGGCTG 60.244 52.174 0.00 0.00 0.00 4.85
2874 3052 1.986882 AGGAAACTTTGACAGCCCAG 58.013 50.000 0.00 0.00 37.44 4.45
2991 3169 4.278310 TCGTCTCATCCCTATCACAGAAA 58.722 43.478 0.00 0.00 0.00 2.52
3001 3179 2.103263 GGTGCTTAATCGTCTCATCCCT 59.897 50.000 0.00 0.00 0.00 4.20
3097 3277 2.203401 CCCGAATAACGCGTTAATGGA 58.797 47.619 32.89 14.81 41.07 3.41
3099 3279 1.935199 ACCCCGAATAACGCGTTAATG 59.065 47.619 32.89 23.72 41.07 1.90
3114 3294 1.752694 CCCATTAAGCCACACCCCG 60.753 63.158 0.00 0.00 0.00 5.73
3192 3372 4.081309 ACCAAATCATTCCTGCAATTCCAG 60.081 41.667 0.00 0.00 0.00 3.86
3251 3431 6.786967 TTAGTAGGCCTTTTCCTAGTAGTG 57.213 41.667 12.58 0.00 42.48 2.74
3252 3432 6.326843 CCATTAGTAGGCCTTTTCCTAGTAGT 59.673 42.308 12.58 0.00 42.48 2.73
3253 3433 6.741801 GCCATTAGTAGGCCTTTTCCTAGTAG 60.742 46.154 12.58 0.00 46.50 2.57
3254 3434 5.071384 GCCATTAGTAGGCCTTTTCCTAGTA 59.929 44.000 12.58 0.00 46.50 1.82
3255 3435 4.141459 GCCATTAGTAGGCCTTTTCCTAGT 60.141 45.833 12.58 0.00 46.50 2.57
3256 3436 4.390264 GCCATTAGTAGGCCTTTTCCTAG 58.610 47.826 12.58 0.00 46.50 3.02
3257 3437 4.432980 GCCATTAGTAGGCCTTTTCCTA 57.567 45.455 12.58 3.66 46.50 2.94
3258 3438 3.298686 GCCATTAGTAGGCCTTTTCCT 57.701 47.619 12.58 4.76 46.50 3.36
3267 3447 0.178068 ACCAGTGCGCCATTAGTAGG 59.822 55.000 4.18 0.00 0.00 3.18
3268 3448 2.024176 AACCAGTGCGCCATTAGTAG 57.976 50.000 4.18 0.00 0.00 2.57
3269 3449 2.483014 AAACCAGTGCGCCATTAGTA 57.517 45.000 4.18 0.00 0.00 1.82
3270 3450 1.269448 CAAAACCAGTGCGCCATTAGT 59.731 47.619 4.18 0.00 0.00 2.24
3271 3451 1.981254 CAAAACCAGTGCGCCATTAG 58.019 50.000 4.18 0.00 0.00 1.73
3272 3452 0.038709 GCAAAACCAGTGCGCCATTA 60.039 50.000 4.18 0.00 31.20 1.90
3273 3453 1.300853 GCAAAACCAGTGCGCCATT 60.301 52.632 4.18 0.00 31.20 3.16
3274 3454 2.339712 GCAAAACCAGTGCGCCAT 59.660 55.556 4.18 0.00 31.20 4.40
3275 3455 2.967507 TAGGCAAAACCAGTGCGCCA 62.968 55.000 4.18 0.00 45.47 5.69
3276 3456 2.265182 TAGGCAAAACCAGTGCGCC 61.265 57.895 4.18 0.00 43.18 6.53
3277 3457 1.081442 GTAGGCAAAACCAGTGCGC 60.081 57.895 0.00 0.00 43.18 6.09
3278 3458 1.803334 TAGTAGGCAAAACCAGTGCG 58.197 50.000 0.00 0.00 43.18 5.34
3279 3459 3.119495 CCATTAGTAGGCAAAACCAGTGC 60.119 47.826 0.00 0.00 43.14 4.40
3280 3460 4.701956 CCATTAGTAGGCAAAACCAGTG 57.298 45.455 0.00 0.00 43.14 3.66
3291 3471 3.067106 CTGGTAATGCGCCATTAGTAGG 58.933 50.000 4.18 0.00 37.06 3.18
3292 3472 3.494626 CACTGGTAATGCGCCATTAGTAG 59.505 47.826 4.18 11.69 37.06 2.57
3293 3473 3.462982 CACTGGTAATGCGCCATTAGTA 58.537 45.455 4.18 1.12 37.06 1.82
3294 3474 2.288666 CACTGGTAATGCGCCATTAGT 58.711 47.619 4.18 3.09 37.06 2.24
3295 3475 1.002468 GCACTGGTAATGCGCCATTAG 60.002 52.381 4.18 2.48 37.06 1.73
3296 3476 1.021202 GCACTGGTAATGCGCCATTA 58.979 50.000 4.18 6.57 35.54 1.90
3297 3477 1.809207 GCACTGGTAATGCGCCATT 59.191 52.632 4.18 7.63 37.80 3.16
3298 3478 3.513225 GCACTGGTAATGCGCCAT 58.487 55.556 4.18 0.00 35.19 4.40
3303 3483 1.002468 CTAATGGCGCACTGGTAATGC 60.002 52.381 10.83 0.00 39.81 3.56
3304 3484 2.288666 ACTAATGGCGCACTGGTAATG 58.711 47.619 10.83 0.00 0.00 1.90
3305 3485 2.710096 ACTAATGGCGCACTGGTAAT 57.290 45.000 10.83 0.00 0.00 1.89
3306 3486 2.740580 GCTACTAATGGCGCACTGGTAA 60.741 50.000 10.83 0.00 0.00 2.85
3307 3487 1.202486 GCTACTAATGGCGCACTGGTA 60.202 52.381 10.83 4.21 0.00 3.25
3308 3488 0.462047 GCTACTAATGGCGCACTGGT 60.462 55.000 10.83 3.08 0.00 4.00
3309 3489 0.461870 TGCTACTAATGGCGCACTGG 60.462 55.000 10.83 0.00 34.35 4.00
3310 3490 0.652592 GTGCTACTAATGGCGCACTG 59.347 55.000 10.83 0.00 46.70 3.66
3311 3491 3.065575 GTGCTACTAATGGCGCACT 57.934 52.632 10.83 0.00 46.70 4.40
3312 3492 1.636340 CGTGCTACTAATGGCGCAC 59.364 57.895 10.83 0.00 46.74 5.34
3313 3493 2.171079 GCGTGCTACTAATGGCGCA 61.171 57.895 10.83 0.00 42.60 6.09
3314 3494 2.626455 GCGTGCTACTAATGGCGC 59.374 61.111 0.00 0.00 39.31 6.53
3315 3495 1.520564 TGGCGTGCTACTAATGGCG 60.521 57.895 0.00 0.00 34.35 5.69
3316 3496 0.462047 AGTGGCGTGCTACTAATGGC 60.462 55.000 9.25 0.00 35.98 4.40
3317 3497 2.100916 ACTAGTGGCGTGCTACTAATGG 59.899 50.000 17.10 9.66 39.04 3.16
3318 3498 3.438297 ACTAGTGGCGTGCTACTAATG 57.562 47.619 17.10 10.26 39.04 1.90
3319 3499 6.885376 AGATATACTAGTGGCGTGCTACTAAT 59.115 38.462 17.10 11.23 39.04 1.73
3320 3500 6.236409 AGATATACTAGTGGCGTGCTACTAA 58.764 40.000 17.10 5.99 39.04 2.24
3321 3501 5.802465 AGATATACTAGTGGCGTGCTACTA 58.198 41.667 15.85 15.85 38.66 1.82
3322 3502 4.653868 AGATATACTAGTGGCGTGCTACT 58.346 43.478 15.27 15.27 40.78 2.57
3323 3503 5.373981 AAGATATACTAGTGGCGTGCTAC 57.626 43.478 5.39 0.00 0.00 3.58
3324 3504 6.236409 AGTAAGATATACTAGTGGCGTGCTA 58.764 40.000 5.39 0.00 0.00 3.49
3325 3505 5.071370 AGTAAGATATACTAGTGGCGTGCT 58.929 41.667 5.39 0.00 0.00 4.40
3326 3506 5.373981 AGTAAGATATACTAGTGGCGTGC 57.626 43.478 5.39 0.00 0.00 5.34
3327 3507 7.968956 CCATTAGTAAGATATACTAGTGGCGTG 59.031 40.741 18.32 2.77 44.87 5.34
3328 3508 8.053026 CCATTAGTAAGATATACTAGTGGCGT 57.947 38.462 18.32 0.00 44.87 5.68
3332 3512 7.485277 GTGCGCCATTAGTAAGATATACTAGTG 59.515 40.741 4.18 9.78 37.44 2.74
3333 3513 7.362747 GGTGCGCCATTAGTAAGATATACTAGT 60.363 40.741 12.58 0.00 31.78 2.57
3334 3514 6.973474 GGTGCGCCATTAGTAAGATATACTAG 59.027 42.308 12.58 0.00 31.78 2.57
3335 3515 6.434965 TGGTGCGCCATTAGTAAGATATACTA 59.565 38.462 16.89 0.00 40.46 1.82
3336 3516 5.245301 TGGTGCGCCATTAGTAAGATATACT 59.755 40.000 16.89 0.00 40.46 2.12
3337 3517 5.475719 TGGTGCGCCATTAGTAAGATATAC 58.524 41.667 16.89 0.00 40.46 1.47
3338 3518 5.731957 TGGTGCGCCATTAGTAAGATATA 57.268 39.130 16.89 0.00 40.46 0.86
3339 3519 4.617253 TGGTGCGCCATTAGTAAGATAT 57.383 40.909 16.89 0.00 40.46 1.63
3357 3537 0.685097 AGTAATGACGCACCTGTGGT 59.315 50.000 0.00 0.00 35.62 4.16
3358 3538 2.094182 ACTAGTAATGACGCACCTGTGG 60.094 50.000 0.00 0.00 0.00 4.17
3359 3539 3.232213 ACTAGTAATGACGCACCTGTG 57.768 47.619 0.00 0.00 0.00 3.66
3360 3540 3.585862 CAACTAGTAATGACGCACCTGT 58.414 45.455 0.00 0.00 0.00 4.00
3361 3541 2.930040 CCAACTAGTAATGACGCACCTG 59.070 50.000 0.00 0.00 0.00 4.00
3362 3542 2.565834 ACCAACTAGTAATGACGCACCT 59.434 45.455 0.00 0.00 0.00 4.00
3363 3543 2.671396 CACCAACTAGTAATGACGCACC 59.329 50.000 0.00 0.00 0.00 5.01
3364 3544 2.093783 GCACCAACTAGTAATGACGCAC 59.906 50.000 0.00 0.00 0.00 5.34
3365 3545 2.343101 GCACCAACTAGTAATGACGCA 58.657 47.619 0.00 0.00 0.00 5.24
3366 3546 1.323534 CGCACCAACTAGTAATGACGC 59.676 52.381 0.00 0.00 0.00 5.19
3367 3547 1.323534 GCGCACCAACTAGTAATGACG 59.676 52.381 0.30 0.00 0.00 4.35
3368 3548 1.664151 GGCGCACCAACTAGTAATGAC 59.336 52.381 10.83 0.00 35.26 3.06
3369 3549 1.276705 TGGCGCACCAACTAGTAATGA 59.723 47.619 10.83 0.00 45.37 2.57
3370 3550 1.732941 TGGCGCACCAACTAGTAATG 58.267 50.000 10.83 0.00 45.37 1.90
3381 3561 3.199677 TGTTACATACTAATGGCGCACC 58.800 45.455 10.83 0.00 37.43 5.01
3382 3562 3.303132 GCTGTTACATACTAATGGCGCAC 60.303 47.826 10.83 0.00 37.43 5.34
3383 3563 2.869801 GCTGTTACATACTAATGGCGCA 59.130 45.455 10.83 0.00 37.43 6.09
3384 3564 2.869801 TGCTGTTACATACTAATGGCGC 59.130 45.455 0.00 0.00 37.43 6.53
3385 3565 4.611355 GCATGCTGTTACATACTAATGGCG 60.611 45.833 11.37 0.00 37.43 5.69
3386 3566 4.611355 CGCATGCTGTTACATACTAATGGC 60.611 45.833 17.13 0.00 37.43 4.40
3387 3567 4.611355 GCGCATGCTGTTACATACTAATGG 60.611 45.833 17.13 0.00 36.32 3.16
3388 3568 4.457810 GCGCATGCTGTTACATACTAATG 58.542 43.478 17.13 0.00 38.39 1.90
3389 3569 3.498397 GGCGCATGCTGTTACATACTAAT 59.502 43.478 17.13 0.00 42.25 1.73
3390 3570 2.869801 GGCGCATGCTGTTACATACTAA 59.130 45.455 17.13 0.00 42.25 2.24
3391 3571 2.159028 TGGCGCATGCTGTTACATACTA 60.159 45.455 17.13 0.00 42.25 1.82
3392 3572 1.299541 GGCGCATGCTGTTACATACT 58.700 50.000 17.13 0.00 42.25 2.12
3393 3573 1.013596 TGGCGCATGCTGTTACATAC 58.986 50.000 17.13 0.00 42.25 2.39
3394 3574 1.965935 ATGGCGCATGCTGTTACATA 58.034 45.000 17.13 0.00 42.25 2.29
3395 3575 1.105457 AATGGCGCATGCTGTTACAT 58.895 45.000 17.13 9.52 42.25 2.29
3396 3576 1.670295 CTAATGGCGCATGCTGTTACA 59.330 47.619 17.13 7.55 42.25 2.41
3397 3577 1.670811 ACTAATGGCGCATGCTGTTAC 59.329 47.619 17.13 1.67 42.25 2.50
3398 3578 1.670295 CACTAATGGCGCATGCTGTTA 59.330 47.619 17.13 8.19 42.25 2.41
3399 3579 0.452987 CACTAATGGCGCATGCTGTT 59.547 50.000 17.13 7.46 42.25 3.16
3400 3580 0.677731 ACACTAATGGCGCATGCTGT 60.678 50.000 17.13 7.64 42.25 4.40
3401 3581 0.248336 CACACTAATGGCGCATGCTG 60.248 55.000 17.13 10.56 42.25 4.41
3402 3582 1.996786 GCACACTAATGGCGCATGCT 61.997 55.000 17.13 0.00 42.25 3.79
3403 3583 1.587088 GCACACTAATGGCGCATGC 60.587 57.895 10.83 7.91 41.71 4.06
3404 3584 1.064621 GGCACACTAATGGCGCATG 59.935 57.895 10.83 0.00 35.20 4.06
3405 3585 3.513225 GGCACACTAATGGCGCAT 58.487 55.556 10.83 0.00 35.20 4.73
3409 3589 2.098293 CGGAAGGCACACTAATGGC 58.902 57.895 0.00 0.00 45.26 4.40
3428 3608 0.889186 CATGCTTACGTATGGCCCCC 60.889 60.000 15.27 0.00 30.61 5.40
3429 3609 0.889186 CCATGCTTACGTATGGCCCC 60.889 60.000 15.27 0.00 44.63 5.80
3430 3610 2.629002 CCATGCTTACGTATGGCCC 58.371 57.895 15.27 0.00 44.63 5.80


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.