Multiple sequence alignment - TraesCS4A01G308300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G308300 chr4A 100.000 9351 0 0 1 9351 602105173 602114523 0.000000e+00 17269.0
1 TraesCS4A01G308300 chr4A 79.846 521 91 11 4970 5481 602944632 602944117 1.480000e-97 368.0
2 TraesCS4A01G308300 chr4A 86.047 86 9 3 326 408 677962966 677963051 1.290000e-13 89.8
3 TraesCS4A01G308300 chr4A 93.103 58 3 1 524 580 5219150 5219207 6.020000e-12 84.2
4 TraesCS4A01G308300 chr4A 88.571 70 6 2 523 590 738784709 738784640 6.020000e-12 84.2
5 TraesCS4A01G308300 chr4D 89.472 5984 469 78 189 6049 3349373 3343428 0.000000e+00 7411.0
6 TraesCS4A01G308300 chr4D 85.264 3936 480 56 1699 5610 1708399 1704540 0.000000e+00 3964.0
7 TraesCS4A01G308300 chr4D 84.397 987 114 22 7116 8089 3340084 3339125 0.000000e+00 933.0
8 TraesCS4A01G308300 chr4D 83.333 786 65 26 8590 9351 3337864 3337121 0.000000e+00 665.0
9 TraesCS4A01G308300 chr4D 85.688 538 71 4 5517 6049 1704462 1703926 6.340000e-156 562.0
10 TraesCS4A01G308300 chr4D 86.538 468 42 9 1209 1658 1708865 1708401 6.520000e-136 496.0
11 TraesCS4A01G308300 chr4D 87.087 333 43 0 5591 5923 3341403 3341071 2.460000e-100 377.0
12 TraesCS4A01G308300 chr4D 82.521 349 38 7 6049 6375 3343120 3342773 1.540000e-72 285.0
13 TraesCS4A01G308300 chr4D 87.336 229 24 3 7900 8123 3342147 3341919 3.350000e-64 257.0
14 TraesCS4A01G308300 chr4D 92.353 170 11 1 16 185 3349707 3349540 3.370000e-59 241.0
15 TraesCS4A01G308300 chr4D 86.932 176 21 2 6574 6748 3340452 3340278 7.410000e-46 196.0
16 TraesCS4A01G308300 chr4D 81.529 157 27 1 5591 5747 3341470 3341316 2.740000e-25 128.0
17 TraesCS4A01G308300 chr4D 79.000 200 27 8 7645 7829 1702945 1702746 1.280000e-23 122.0
18 TraesCS4A01G308300 chr4D 80.000 145 24 3 5611 5754 3341518 3341378 1.660000e-17 102.0
19 TraesCS4A01G308300 chr4B 89.798 5097 418 51 989 6044 3892955 3897990 0.000000e+00 6438.0
20 TraesCS4A01G308300 chr4B 92.598 2540 150 21 1383 3895 4136864 4134336 0.000000e+00 3615.0
21 TraesCS4A01G308300 chr4B 87.950 2166 220 13 3893 6047 4129470 4127335 0.000000e+00 2516.0
22 TraesCS4A01G308300 chr4B 84.298 1210 123 34 6947 8121 3899027 3900204 0.000000e+00 1120.0
23 TraesCS4A01G308300 chr4B 85.656 976 102 20 6942 7895 4126278 4125319 0.000000e+00 992.0
24 TraesCS4A01G308300 chr4B 83.351 931 109 22 6045 6942 4127223 4126306 0.000000e+00 819.0
25 TraesCS4A01G308300 chr4B 86.667 555 56 10 8278 8816 3901497 3902049 4.830000e-167 599.0
26 TraesCS4A01G308300 chr4B 84.030 526 52 13 8290 8799 4101003 4100494 2.360000e-130 477.0
27 TraesCS4A01G308300 chr4B 84.030 526 52 13 8290 8799 4104330 4103821 2.360000e-130 477.0
28 TraesCS4A01G308300 chr4B 84.030 526 52 16 8290 8799 4109321 4108812 2.360000e-130 477.0
29 TraesCS4A01G308300 chr4B 83.840 526 53 13 8290 8799 4089088 4088579 1.100000e-128 472.0
30 TraesCS4A01G308300 chr4B 83.840 526 53 13 8290 8799 4092984 4092475 1.100000e-128 472.0
31 TraesCS4A01G308300 chr4B 83.650 526 54 13 8290 8799 4095451 4094942 5.110000e-127 466.0
32 TraesCS4A01G308300 chr4B 83.650 526 54 15 8290 8799 4119100 4118591 5.110000e-127 466.0
33 TraesCS4A01G308300 chr4B 83.523 528 51 15 8290 8799 4099339 4098830 2.380000e-125 460.0
34 TraesCS4A01G308300 chr4B 86.788 386 26 15 8984 9351 3902293 3902671 3.140000e-109 407.0
35 TraesCS4A01G308300 chr4B 93.750 192 12 0 1166 1357 4137051 4136860 1.190000e-73 289.0
36 TraesCS4A01G308300 chrUn 90.658 2173 150 26 999 3135 316685277 316687432 0.000000e+00 2839.0
37 TraesCS4A01G308300 chrUn 85.436 769 99 9 3355 4116 47685633 47684871 0.000000e+00 787.0
38 TraesCS4A01G308300 chrUn 76.471 187 32 10 5290 5473 272915973 272915796 3.600000e-14 91.6
39 TraesCS4A01G308300 chr1B 75.289 2076 457 39 1861 3920 130024024 130021989 0.000000e+00 941.0
40 TraesCS4A01G308300 chr6A 76.429 1417 284 38 2023 3421 100263525 100264909 0.000000e+00 721.0
41 TraesCS4A01G308300 chr6A 72.735 2252 549 54 1863 4088 29880691 29878479 0.000000e+00 697.0
42 TraesCS4A01G308300 chr2B 76.088 1447 300 37 1995 3421 754921271 754922691 0.000000e+00 713.0
43 TraesCS4A01G308300 chr2B 75.740 169 28 10 5291 5451 693896350 693896513 1.300000e-08 73.1
44 TraesCS4A01G308300 chr6D 72.751 2257 544 56 1863 4088 27978530 27980746 0.000000e+00 695.0
45 TraesCS4A01G308300 chr6D 73.794 1576 370 31 1863 3421 28299199 28297650 4.870000e-162 582.0
46 TraesCS4A01G308300 chr6D 91.139 79 7 0 363 441 88873699 88873777 3.570000e-19 108.0
47 TraesCS4A01G308300 chr1A 76.263 1247 262 23 1864 3099 97809178 97807955 4.760000e-177 632.0
48 TraesCS4A01G308300 chr6B 72.393 2206 531 55 1863 4043 52354129 52351977 6.160000e-176 628.0
49 TraesCS4A01G308300 chr6B 82.589 224 24 8 344 556 594785367 594785586 5.770000e-42 183.0
50 TraesCS4A01G308300 chr6B 94.937 79 4 0 363 441 169218715 169218793 3.550000e-24 124.0
51 TraesCS4A01G308300 chr6B 76.471 187 32 10 5290 5473 51949558 51949735 3.600000e-14 91.6
52 TraesCS4A01G308300 chr2A 76.141 1052 221 23 1863 2908 715300817 715301844 8.320000e-145 525.0
53 TraesCS4A01G308300 chr3D 82.320 181 25 5 343 521 486555518 486555343 5.850000e-32 150.0
54 TraesCS4A01G308300 chr7A 77.714 175 32 5 344 517 4740697 4740865 5.970000e-17 100.0
55 TraesCS4A01G308300 chr1D 82.569 109 15 2 375 481 262253827 262253933 1.000000e-14 93.5
56 TraesCS4A01G308300 chr2D 84.810 79 7 5 520 596 218050992 218051067 3.620000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G308300 chr4A 602105173 602114523 9350 False 17269.000000 17269 100.000000 1 9351 1 chr4A.!!$F2 9350
1 TraesCS4A01G308300 chr4A 602944117 602944632 515 True 368.000000 368 79.846000 4970 5481 1 chr4A.!!$R1 511
2 TraesCS4A01G308300 chr4D 1702746 1708865 6119 True 1286.000000 3964 84.122500 1209 7829 4 chr4D.!!$R1 6620
3 TraesCS4A01G308300 chr4D 3337121 3349707 12586 True 1059.500000 7411 85.496000 16 9351 10 chr4D.!!$R2 9335
4 TraesCS4A01G308300 chr4B 3892955 3902671 9716 False 2141.000000 6438 86.887750 989 9351 4 chr4B.!!$F1 8362
5 TraesCS4A01G308300 chr4B 4134336 4137051 2715 True 1952.000000 3615 93.174000 1166 3895 2 chr4B.!!$R5 2729
6 TraesCS4A01G308300 chr4B 4125319 4129470 4151 True 1442.333333 2516 85.652333 3893 7895 3 chr4B.!!$R4 4002
7 TraesCS4A01G308300 chr4B 4108812 4109321 509 True 477.000000 477 84.030000 8290 8799 1 chr4B.!!$R1 509
8 TraesCS4A01G308300 chr4B 4088579 4104330 15751 True 470.666667 477 83.818833 8290 8799 6 chr4B.!!$R3 509
9 TraesCS4A01G308300 chr4B 4118591 4119100 509 True 466.000000 466 83.650000 8290 8799 1 chr4B.!!$R2 509
10 TraesCS4A01G308300 chrUn 316685277 316687432 2155 False 2839.000000 2839 90.658000 999 3135 1 chrUn.!!$F1 2136
11 TraesCS4A01G308300 chrUn 47684871 47685633 762 True 787.000000 787 85.436000 3355 4116 1 chrUn.!!$R1 761
12 TraesCS4A01G308300 chr1B 130021989 130024024 2035 True 941.000000 941 75.289000 1861 3920 1 chr1B.!!$R1 2059
13 TraesCS4A01G308300 chr6A 100263525 100264909 1384 False 721.000000 721 76.429000 2023 3421 1 chr6A.!!$F1 1398
14 TraesCS4A01G308300 chr6A 29878479 29880691 2212 True 697.000000 697 72.735000 1863 4088 1 chr6A.!!$R1 2225
15 TraesCS4A01G308300 chr2B 754921271 754922691 1420 False 713.000000 713 76.088000 1995 3421 1 chr2B.!!$F2 1426
16 TraesCS4A01G308300 chr6D 27978530 27980746 2216 False 695.000000 695 72.751000 1863 4088 1 chr6D.!!$F1 2225
17 TraesCS4A01G308300 chr6D 28297650 28299199 1549 True 582.000000 582 73.794000 1863 3421 1 chr6D.!!$R1 1558
18 TraesCS4A01G308300 chr1A 97807955 97809178 1223 True 632.000000 632 76.263000 1864 3099 1 chr1A.!!$R1 1235
19 TraesCS4A01G308300 chr6B 52351977 52354129 2152 True 628.000000 628 72.393000 1863 4043 1 chr6B.!!$R1 2180
20 TraesCS4A01G308300 chr2A 715300817 715301844 1027 False 525.000000 525 76.141000 1863 2908 1 chr2A.!!$F1 1045

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
907 1119 0.107703 TTGGAGCTAGTGGCATTCCG 60.108 55.000 0.00 0.0 44.79 4.30 F
1092 1350 0.323725 TTTCTGCATGCTCCTTCCCC 60.324 55.000 20.33 0.0 0.00 4.81 F
1854 2174 0.318699 CCGACACAGAGAGTTCGCAA 60.319 55.000 0.00 0.0 32.87 4.85 F
3382 3722 0.405198 ATGTGGAGGATGTGTTGCCA 59.595 50.000 0.00 0.0 0.00 4.92 F
4220 4585 0.174389 TCACTGAGCTGCGATCTTCC 59.826 55.000 0.00 0.0 0.00 3.46 F
4997 5374 0.178891 TCCAAGGTCTCTGCTCCCTT 60.179 55.000 0.00 0.0 39.14 3.95 F
6038 6595 0.251922 ATTGCTGCCATTCCACCTGT 60.252 50.000 0.00 0.0 0.00 4.00 F
6184 7060 0.536006 GTGCAGGGCTCTGTGTCTTT 60.536 55.000 16.66 0.0 42.78 2.52 F
7028 10302 1.001406 AGGCTACAGATGATTAGGCGC 59.999 52.381 0.00 0.0 43.80 6.53 F
8033 11456 0.111639 GGTTGAGTTTGGTGGGGCTA 59.888 55.000 0.00 0.0 0.00 3.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1854 2174 3.443681 CAGTTTTGGTGTTTCCTCTGTGT 59.556 43.478 0.00 0.00 37.07 3.72 R
3017 3351 1.429463 GTGTAACGAGGACTGCCAAG 58.571 55.000 0.00 0.00 36.29 3.61 R
3561 3910 1.449353 GGGGCACAACAAAATGGCA 59.551 52.632 0.00 0.00 42.93 4.92 R
4404 4769 0.246086 CTTGAGTCTGCTCCGCTCTT 59.754 55.000 0.00 0.00 40.95 2.85 R
5347 5726 0.599991 TTGCTGTGTGAAGCGATCGT 60.600 50.000 17.81 0.00 46.65 3.73 R
6474 9327 0.523072 CCATTGGCAACTTGGAGACG 59.477 55.000 13.48 0.00 41.43 4.18 R
7456 10741 0.107654 GTGCTGCCCTATCGGAAAGT 60.108 55.000 0.00 0.00 0.00 2.66 R
7715 11100 0.178068 AAGCAGTGTGTCGGAGTTGT 59.822 50.000 0.00 0.00 0.00 3.32 R
8230 11726 0.101399 TCTTCTGAGAATCCGCGCTC 59.899 55.000 5.56 1.93 0.00 5.03 R
8927 28785 0.591659 GGAAAGTCTGAAACGCCCAC 59.408 55.000 0.00 0.00 0.00 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
86 87 0.317854 GTGCCTGCAAAACCGACTTC 60.318 55.000 0.00 0.00 0.00 3.01
98 99 1.337728 ACCGACTTCACATTCGATGCA 60.338 47.619 0.00 0.00 37.43 3.96
126 127 3.992643 TGAATGAAAATTGTGCTGTGGG 58.007 40.909 0.00 0.00 0.00 4.61
148 149 6.206634 TGGGTATTCTTTGTGTTGCTAGAAAG 59.793 38.462 0.00 0.00 33.58 2.62
149 150 6.430000 GGGTATTCTTTGTGTTGCTAGAAAGA 59.570 38.462 0.00 0.00 37.93 2.52
151 152 8.349983 GGTATTCTTTGTGTTGCTAGAAAGAAA 58.650 33.333 17.86 0.00 46.33 2.52
152 153 9.899226 GTATTCTTTGTGTTGCTAGAAAGAAAT 57.101 29.630 17.86 12.22 46.33 2.17
170 171 3.959495 AATCACACCCAATCCTGCTAT 57.041 42.857 0.00 0.00 0.00 2.97
185 186 7.618019 ATCCTGCTATATTGGAACAGAGTAA 57.382 36.000 0.00 0.00 42.39 2.24
186 187 7.618019 TCCTGCTATATTGGAACAGAGTAAT 57.382 36.000 0.00 0.00 42.39 1.89
187 188 7.671302 TCCTGCTATATTGGAACAGAGTAATC 58.329 38.462 0.00 0.00 42.39 1.75
188 189 6.876257 CCTGCTATATTGGAACAGAGTAATCC 59.124 42.308 0.00 0.00 42.39 3.01
189 190 7.256475 CCTGCTATATTGGAACAGAGTAATCCT 60.256 40.741 0.00 0.00 42.39 3.24
191 192 9.154632 TGCTATATTGGAACAGAGTAATCCTAA 57.845 33.333 0.00 0.00 42.39 2.69
202 366 8.749026 ACAGAGTAATCCTAAATACTTCTCGA 57.251 34.615 0.00 0.00 32.66 4.04
215 379 2.289945 ACTTCTCGAGCAGGCAAAGATT 60.290 45.455 16.54 0.00 0.00 2.40
223 387 5.008019 TCGAGCAGGCAAAGATTGATAATTC 59.992 40.000 0.00 0.00 0.00 2.17
225 389 6.203530 CGAGCAGGCAAAGATTGATAATTCTA 59.796 38.462 0.00 0.00 0.00 2.10
232 396 9.727627 GGCAAAGATTGATAATTCTAGACAAAG 57.272 33.333 0.00 0.00 0.00 2.77
243 407 4.669866 TCTAGACAAAGACTGTAGGGGA 57.330 45.455 0.00 0.00 38.84 4.81
244 408 4.342359 TCTAGACAAAGACTGTAGGGGAC 58.658 47.826 0.00 0.00 38.84 4.46
245 409 2.972348 AGACAAAGACTGTAGGGGACA 58.028 47.619 0.00 0.00 38.84 4.02
246 410 3.314693 AGACAAAGACTGTAGGGGACAA 58.685 45.455 0.00 0.00 38.84 3.18
247 411 3.910627 AGACAAAGACTGTAGGGGACAAT 59.089 43.478 0.00 0.00 38.84 2.71
248 412 5.091552 AGACAAAGACTGTAGGGGACAATA 58.908 41.667 0.00 0.00 38.84 1.90
255 419 8.568617 AAGACTGTAGGGGACAATATAGATTT 57.431 34.615 0.00 0.00 37.70 2.17
264 428 7.661847 AGGGGACAATATAGATTTCTTTTAGCG 59.338 37.037 0.00 0.00 0.00 4.26
269 433 6.952935 ATATAGATTTCTTTTAGCGAGCCG 57.047 37.500 0.00 0.00 0.00 5.52
270 434 2.280628 AGATTTCTTTTAGCGAGCCGG 58.719 47.619 0.00 0.00 0.00 6.13
281 445 2.677003 CGAGCCGGTGTGCGAAAAT 61.677 57.895 1.90 0.00 36.02 1.82
286 450 0.869068 CCGGTGTGCGAAAATACACA 59.131 50.000 9.38 0.00 46.79 3.72
287 451 1.136085 CCGGTGTGCGAAAATACACAG 60.136 52.381 9.38 5.45 46.78 3.66
289 453 1.963747 GTGTGCGAAAATACACAGCC 58.036 50.000 0.00 0.00 46.78 4.85
291 455 0.179200 GTGCGAAAATACACAGCCGG 60.179 55.000 0.00 0.00 36.77 6.13
297 461 0.690762 AAATACACAGCCGGACCTGT 59.309 50.000 5.05 7.39 46.47 4.00
316 480 1.153429 GTCTAGGCGCACCCGAATT 60.153 57.895 10.83 0.00 39.21 2.17
318 482 2.124901 TAGGCGCACCCGAATTGG 60.125 61.111 10.83 0.00 39.21 3.16
321 485 3.825611 GCGCACCCGAATTGGCAT 61.826 61.111 0.30 0.00 36.29 4.40
328 492 4.155099 CGCACCCGAATTGGCATAATAATA 59.845 41.667 0.00 0.00 36.29 0.98
329 493 5.335269 CGCACCCGAATTGGCATAATAATAA 60.335 40.000 0.00 0.00 36.29 1.40
331 495 6.531240 GCACCCGAATTGGCATAATAATAATG 59.469 38.462 0.00 0.00 35.87 1.90
332 496 7.601856 CACCCGAATTGGCATAATAATAATGT 58.398 34.615 0.00 0.00 35.87 2.71
333 497 8.735315 CACCCGAATTGGCATAATAATAATGTA 58.265 33.333 0.00 0.00 35.87 2.29
334 498 9.474313 ACCCGAATTGGCATAATAATAATGTAT 57.526 29.630 0.00 0.00 35.87 2.29
386 569 2.223876 ACTCCTGTGTAAAGTTTCGCGA 60.224 45.455 3.71 3.71 0.00 5.87
399 582 4.279659 AGTTTCGCGACAAAATGACTTTC 58.720 39.130 9.15 0.00 0.00 2.62
400 583 3.953874 TTCGCGACAAAATGACTTTCA 57.046 38.095 9.15 0.00 0.00 2.69
414 597 4.900684 TGACTTTCATGGTATTCGGAACA 58.099 39.130 0.00 0.00 0.00 3.18
417 600 6.072728 TGACTTTCATGGTATTCGGAACAAAG 60.073 38.462 0.00 0.00 0.00 2.77
419 602 6.488683 ACTTTCATGGTATTCGGAACAAAGAA 59.511 34.615 0.00 0.00 0.00 2.52
438 621 8.414778 ACAAAGAAAAACAAAACCGATACCATA 58.585 29.630 0.00 0.00 0.00 2.74
449 632 9.940166 CAAAACCGATACCATATTAAACTTACC 57.060 33.333 0.00 0.00 0.00 2.85
454 637 8.653338 CCGATACCATATTAAACTTACCATTCG 58.347 37.037 0.00 0.00 0.00 3.34
459 642 6.910433 CCATATTAAACTTACCATTCGCACAC 59.090 38.462 0.00 0.00 0.00 3.82
463 646 4.483476 AACTTACCATTCGCACACTTTC 57.517 40.909 0.00 0.00 0.00 2.62
466 649 4.689345 ACTTACCATTCGCACACTTTCTAC 59.311 41.667 0.00 0.00 0.00 2.59
473 656 2.286833 TCGCACACTTTCTACTTGCAAC 59.713 45.455 0.00 0.00 32.51 4.17
474 657 2.031560 CGCACACTTTCTACTTGCAACA 59.968 45.455 0.00 0.00 32.51 3.33
477 660 5.043248 GCACACTTTCTACTTGCAACATTT 58.957 37.500 0.00 0.00 33.24 2.32
479 662 6.508404 GCACACTTTCTACTTGCAACATTTTG 60.508 38.462 0.00 0.00 35.62 2.44
480 663 6.531240 CACACTTTCTACTTGCAACATTTTGT 59.469 34.615 0.00 0.00 34.90 2.83
481 664 6.751888 ACACTTTCTACTTGCAACATTTTGTC 59.248 34.615 0.00 0.00 34.90 3.18
507 690 4.314740 TTTGCCAACAATACCACAAGTC 57.685 40.909 0.00 0.00 35.21 3.01
508 691 2.937519 TGCCAACAATACCACAAGTCA 58.062 42.857 0.00 0.00 0.00 3.41
515 698 6.760770 CCAACAATACCACAAGTCATTTTGTT 59.239 34.615 0.00 0.00 39.17 2.83
520 703 5.248870 ACCACAAGTCATTTTGTTCTGAC 57.751 39.130 0.00 0.00 39.17 3.51
521 704 4.201910 ACCACAAGTCATTTTGTTCTGACG 60.202 41.667 0.00 0.00 45.08 4.35
565 757 5.105797 TGCTTGTTCTGACAAAGTTTCACAT 60.106 36.000 0.00 0.00 44.65 3.21
608 800 8.749354 ACTATTTTCTATTTCCAAAAATCCGCT 58.251 29.630 0.00 0.00 36.49 5.52
615 807 1.250154 CCAAAAATCCGCTCCAGCCA 61.250 55.000 0.00 0.00 37.91 4.75
616 808 0.602562 CAAAAATCCGCTCCAGCCAA 59.397 50.000 0.00 0.00 37.91 4.52
621 813 2.898920 ATCCGCTCCAGCCAATGTGG 62.899 60.000 0.00 0.00 41.55 4.17
633 825 3.139025 AGCCAATGTGGAGCTATATTGGT 59.861 43.478 20.11 9.23 45.65 3.67
662 856 7.032598 AGGAGTATGGAATGAGAAAAAGGAA 57.967 36.000 0.00 0.00 0.00 3.36
666 860 8.517062 AGTATGGAATGAGAAAAAGGAATCTG 57.483 34.615 0.00 0.00 0.00 2.90
714 925 0.178992 AAGCAAAGCTACCAGCACCA 60.179 50.000 0.38 0.00 45.56 4.17
716 927 0.606401 GCAAAGCTACCAGCACCAGA 60.606 55.000 0.38 0.00 45.56 3.86
717 928 1.952367 GCAAAGCTACCAGCACCAGAT 60.952 52.381 0.38 0.00 45.56 2.90
718 929 2.440409 CAAAGCTACCAGCACCAGATT 58.560 47.619 0.38 0.00 45.56 2.40
727 938 2.954318 CCAGCACCAGATTATCCAAAGG 59.046 50.000 0.00 0.00 0.00 3.11
814 1026 2.241685 AGCTTCCTTTGCCTCATCTCAT 59.758 45.455 0.00 0.00 0.00 2.90
854 1066 6.479884 AGAATATATTCATTGCCACCTCTCC 58.520 40.000 24.00 0.00 39.23 3.71
874 1086 6.776744 TCTCCATCATATATTCTTGCTTGCT 58.223 36.000 0.00 0.00 0.00 3.91
875 1087 7.910584 TCTCCATCATATATTCTTGCTTGCTA 58.089 34.615 0.00 0.00 0.00 3.49
876 1088 8.039538 TCTCCATCATATATTCTTGCTTGCTAG 58.960 37.037 0.00 0.00 0.00 3.42
885 1097 3.194719 GCTTGCTAGCCTGCCTTG 58.805 61.111 13.29 0.00 41.74 3.61
886 1098 3.061260 GCTTGCTAGCCTGCCTTGC 62.061 63.158 13.29 2.33 41.74 4.01
891 1103 1.751927 CTAGCCTGCCTTGCCTTGG 60.752 63.158 0.00 0.00 0.00 3.61
907 1119 0.107703 TTGGAGCTAGTGGCATTCCG 60.108 55.000 0.00 0.00 44.79 4.30
961 1204 3.884318 GAGCATCTCCCTCCTCCC 58.116 66.667 0.00 0.00 0.00 4.30
964 1207 2.525381 CATCTCCCTCCTCCCCGG 60.525 72.222 0.00 0.00 0.00 5.73
1078 1336 3.814945 GGCACGTGAATCTTTCTTTCTG 58.185 45.455 22.23 0.00 0.00 3.02
1090 1348 2.119801 TCTTTCTGCATGCTCCTTCC 57.880 50.000 20.33 0.00 0.00 3.46
1091 1349 1.101331 CTTTCTGCATGCTCCTTCCC 58.899 55.000 20.33 0.00 0.00 3.97
1092 1350 0.323725 TTTCTGCATGCTCCTTCCCC 60.324 55.000 20.33 0.00 0.00 4.81
1106 1368 2.622436 CTTCCCCTGACAAGAACGATC 58.378 52.381 0.00 0.00 0.00 3.69
1142 1405 2.327228 GTGGCTAACCGCAAACAGT 58.673 52.632 0.00 0.00 46.41 3.55
1143 1406 0.666374 GTGGCTAACCGCAAACAGTT 59.334 50.000 0.00 0.00 46.41 3.16
1255 1521 3.099841 TGGGTGGTGACCAAGGCA 61.100 61.111 5.57 0.00 45.25 4.75
1374 1640 1.971167 GGATGCTCAACAACGCCCA 60.971 57.895 0.00 0.00 0.00 5.36
1377 1643 3.365265 GCTCAACAACGCCCAGGG 61.365 66.667 0.00 0.00 0.00 4.45
1378 1644 2.672996 CTCAACAACGCCCAGGGG 60.673 66.667 7.91 3.48 38.57 4.79
1408 1701 1.380302 GGACATCACCAACCCTGCT 59.620 57.895 0.00 0.00 0.00 4.24
1460 1753 3.917870 CGTATGTCGCCGATGACC 58.082 61.111 0.00 0.00 38.11 4.02
1461 1754 1.359117 CGTATGTCGCCGATGACCT 59.641 57.895 0.00 0.00 38.11 3.85
1463 1756 0.597637 GTATGTCGCCGATGACCTGG 60.598 60.000 0.00 0.00 38.11 4.45
1464 1757 1.744320 TATGTCGCCGATGACCTGGG 61.744 60.000 0.00 0.00 38.11 4.45
1469 1780 4.864334 CCGATGACCTGGGCTGCC 62.864 72.222 11.05 11.05 0.00 4.85
1579 1890 1.889573 GGCTAGATCTGTTGCCGGC 60.890 63.158 22.73 22.73 35.79 6.13
1691 2005 1.606885 CGGATGCATGCCCAAGGTTT 61.607 55.000 16.68 0.00 0.00 3.27
1854 2174 0.318699 CCGACACAGAGAGTTCGCAA 60.319 55.000 0.00 0.00 32.87 4.85
2012 2335 5.293569 CGTATTCCTAACCCAGTCAACATTC 59.706 44.000 0.00 0.00 0.00 2.67
2322 2650 8.299570 AGATAACAGTAGTGAAAGCAAAAATGG 58.700 33.333 4.09 0.00 0.00 3.16
3017 3351 7.148804 GGTTTTTCAAAAAGAATGTATCGAGCC 60.149 37.037 0.00 0.00 35.83 4.70
3184 3518 3.103911 GCGGACGTCAAGGACACG 61.104 66.667 18.91 10.70 43.13 4.49
3256 3590 4.868450 TGAAGTTCAAAACCTACACACG 57.132 40.909 2.20 0.00 0.00 4.49
3382 3722 0.405198 ATGTGGAGGATGTGTTGCCA 59.595 50.000 0.00 0.00 0.00 4.92
3445 3788 6.489700 TCAAGTCAGCTGGTTTTTATGATGAA 59.510 34.615 15.13 0.00 0.00 2.57
3447 3790 5.098211 GTCAGCTGGTTTTTATGATGAAGC 58.902 41.667 15.13 0.00 0.00 3.86
3468 3817 3.557595 GCCTTGTGCATATCTAGTGTGTC 59.442 47.826 0.00 0.00 40.77 3.67
3538 3887 2.739913 CCGCTTCGGTTCAACAAGATAA 59.260 45.455 0.00 0.00 42.73 1.75
3673 4028 3.751698 GTGGGACAAGAAGGTAACATGTC 59.248 47.826 0.00 0.00 44.16 3.06
3687 4042 5.758296 GGTAACATGTCTGAACTGAGTCAAA 59.242 40.000 0.00 0.00 0.00 2.69
3782 4140 7.275888 AGCAACTGAATCAAAACTGATACAA 57.724 32.000 0.00 0.00 0.00 2.41
3812 4170 7.659390 AGCCACATGAAAGAGCTAATATTAGAC 59.341 37.037 23.84 16.23 32.47 2.59
4023 4385 2.946785 ACCTTCCACGTATAGGAGAGG 58.053 52.381 14.59 14.57 38.40 3.69
4078 4440 1.745653 GGACTGCATCTTAGGCCAAAC 59.254 52.381 5.01 0.00 43.21 2.93
4138 4500 5.147032 ACCAAGATTGAGAAAATGGGTTGA 58.853 37.500 0.00 0.00 32.21 3.18
4220 4585 0.174389 TCACTGAGCTGCGATCTTCC 59.826 55.000 0.00 0.00 0.00 3.46
4228 4593 2.369860 AGCTGCGATCTTCCCATCATAA 59.630 45.455 0.00 0.00 0.00 1.90
4324 4689 4.706476 CCCAAAGCTATTGTCATTTCCTCA 59.294 41.667 0.00 0.00 0.00 3.86
4341 4706 4.435137 TCCTCAAATCCCTTGGACTTCTA 58.565 43.478 0.00 0.00 32.98 2.10
4374 4739 1.730064 CTGTGATAAAACGGGTGGACG 59.270 52.381 0.00 0.00 40.31 4.79
4398 4763 4.806330 TGGTCTTGAGAAGCTAGTTTACG 58.194 43.478 0.00 0.00 0.00 3.18
4401 4766 5.924825 GGTCTTGAGAAGCTAGTTTACGAAA 59.075 40.000 0.00 0.00 0.00 3.46
4452 4817 4.589908 GCTGGAAGTGAAGGGAAAAGATA 58.410 43.478 0.00 0.00 35.30 1.98
4453 4818 5.010282 GCTGGAAGTGAAGGGAAAAGATAA 58.990 41.667 0.00 0.00 35.30 1.75
4456 4821 4.395231 GGAAGTGAAGGGAAAAGATAACCG 59.605 45.833 0.00 0.00 0.00 4.44
4457 4822 4.903045 AGTGAAGGGAAAAGATAACCGA 57.097 40.909 0.00 0.00 0.00 4.69
4460 4825 4.630505 GTGAAGGGAAAAGATAACCGAGAC 59.369 45.833 0.00 0.00 0.00 3.36
4464 4829 4.286291 AGGGAAAAGATAACCGAGACAGTT 59.714 41.667 0.00 0.00 0.00 3.16
4469 4834 6.937436 AAAGATAACCGAGACAGTTTGTTT 57.063 33.333 0.00 0.00 0.00 2.83
4544 4909 0.619505 ATTGCTCTCCTCTGCTGCTT 59.380 50.000 0.00 0.00 0.00 3.91
4548 4913 1.411977 GCTCTCCTCTGCTGCTTGATA 59.588 52.381 0.00 0.00 0.00 2.15
4571 4936 5.799827 ACCTCCTAATGCTAACATCTCTC 57.200 43.478 0.00 0.00 34.62 3.20
4581 4946 3.630312 GCTAACATCTCTCGAGTTCCTCT 59.370 47.826 13.13 0.00 0.00 3.69
4582 4947 4.261031 GCTAACATCTCTCGAGTTCCTCTC 60.261 50.000 13.13 0.00 39.62 3.20
4583 4948 3.358111 ACATCTCTCGAGTTCCTCTCA 57.642 47.619 13.13 0.00 42.88 3.27
4587 4952 6.068010 ACATCTCTCGAGTTCCTCTCAATAT 58.932 40.000 13.13 0.00 42.88 1.28
4598 4963 6.541641 AGTTCCTCTCAATATGTGATTCAAGC 59.458 38.462 0.00 0.00 35.07 4.01
4612 4977 6.832900 TGTGATTCAAGCAATGTATTATCCCA 59.167 34.615 0.00 0.00 0.00 4.37
4633 4998 1.270550 GGTTGAAAGTGTGAGCCATGG 59.729 52.381 7.63 7.63 0.00 3.66
4698 5063 3.260380 TGGTTGCAATGGTAAGGAATTGG 59.740 43.478 0.59 0.00 34.90 3.16
4716 5081 0.871057 GGCACAACTGCTCTCACTTC 59.129 55.000 0.00 0.00 43.66 3.01
4747 5112 4.503910 CTCACCGAAATGACAATAGTGGA 58.496 43.478 0.00 0.00 0.00 4.02
4769 5134 6.126507 TGGATTGTCAGGAGATAAAATGGCTA 60.127 38.462 0.00 0.00 0.00 3.93
4786 5151 2.837031 CTAGGTGTGGCGGGGCAATT 62.837 60.000 0.00 0.00 0.00 2.32
4803 5174 5.301298 GGGCAATTATCAGCATCTTCTTCTT 59.699 40.000 0.00 0.00 0.00 2.52
4821 5192 3.479489 TCTTCTGCTGCTGAACAATTGA 58.521 40.909 16.58 10.11 0.00 2.57
4862 5239 0.681733 AGCAGCAAGAGTCGAAAGGA 59.318 50.000 0.00 0.00 0.00 3.36
4873 5250 2.083002 GTCGAAAGGAGGAGTAGACGT 58.917 52.381 0.00 0.00 0.00 4.34
4918 5295 5.412904 AGCTACAGAAGTTAAACATCCAAGC 59.587 40.000 0.00 0.00 0.00 4.01
4960 5337 3.107601 TCTCCTATTCACTGGAAGGTGG 58.892 50.000 0.00 0.00 39.30 4.61
4964 5341 1.620822 ATTCACTGGAAGGTGGCAAC 58.379 50.000 0.00 0.00 39.30 4.17
4997 5374 0.178891 TCCAAGGTCTCTGCTCCCTT 60.179 55.000 0.00 0.00 39.14 3.95
5002 5379 0.980423 GGTCTCTGCTCCCTTCAGTT 59.020 55.000 0.00 0.00 33.48 3.16
5003 5380 1.349357 GGTCTCTGCTCCCTTCAGTTT 59.651 52.381 0.00 0.00 33.48 2.66
5047 5424 6.326583 CCCAAGTTACTCCACTCCTATTCATA 59.673 42.308 0.00 0.00 0.00 2.15
5052 5429 8.725256 AGTTACTCCACTCCTATTCATACTCTA 58.275 37.037 0.00 0.00 0.00 2.43
5080 5457 2.397044 TTTCCAACCTCCCTGCAAAT 57.603 45.000 0.00 0.00 0.00 2.32
5093 5470 7.400052 ACCTCCCTGCAAATATTAATTTTGAGT 59.600 33.333 18.90 7.63 36.40 3.41
5154 5532 2.765969 CCCAAGGCCACCTCACAT 59.234 61.111 5.01 0.00 30.89 3.21
5155 5533 1.379044 CCCAAGGCCACCTCACATC 60.379 63.158 5.01 0.00 30.89 3.06
5160 5538 0.981183 AGGCCACCTCACATCGTTAA 59.019 50.000 5.01 0.00 0.00 2.01
5219 5598 2.289694 GCCACTTGACAAGGAGCTTCTA 60.290 50.000 19.16 0.00 0.00 2.10
5271 5650 5.434408 AGCTGAAGACAGATGATATTGCAA 58.566 37.500 0.00 0.00 46.03 4.08
5277 5656 5.748402 AGACAGATGATATTGCAAGGTTCA 58.252 37.500 4.94 8.18 0.00 3.18
5280 5659 7.013083 AGACAGATGATATTGCAAGGTTCATTC 59.987 37.037 17.55 13.09 0.00 2.67
5332 5711 2.421529 CCCTCACCACCCTAACTATTGC 60.422 54.545 0.00 0.00 0.00 3.56
5335 5714 3.941483 CTCACCACCCTAACTATTGCTTG 59.059 47.826 0.00 0.00 0.00 4.01
5398 5780 3.151022 GCTCCTCACCTCCCTCCG 61.151 72.222 0.00 0.00 0.00 4.63
5414 5796 0.674581 TCCGGACGCTCGAGTTTAGA 60.675 55.000 15.13 1.25 0.00 2.10
5478 5860 3.285484 CTTGCCAGCCTCAAGACATTAT 58.715 45.455 4.70 0.00 42.52 1.28
5485 5867 5.243981 CAGCCTCAAGACATTATGGATAGG 58.756 45.833 0.00 0.00 0.00 2.57
5501 5883 3.181461 GGATAGGGTCCTGTCAAGTCATG 60.181 52.174 14.27 0.00 44.16 3.07
5510 5892 1.000052 TGTCAAGTCATGCGGTCGTTA 60.000 47.619 0.00 0.00 0.00 3.18
5575 6128 1.609061 CGACTGTCCTGCCATCAAGTT 60.609 52.381 1.55 0.00 0.00 2.66
5621 6174 7.598869 CCAAGTTCGCTGCAAGTATTAGATATA 59.401 37.037 0.00 0.00 35.30 0.86
5686 6239 3.006110 CCAAGCTCTCTGCAAAAATTGGA 59.994 43.478 8.59 0.00 41.63 3.53
5694 6247 5.539574 TCTCTGCAAAAATTGGAAATCTGGA 59.460 36.000 0.00 0.00 0.00 3.86
5749 6302 1.202330 CTCCCAAGATCTCTGCAGGT 58.798 55.000 15.13 0.00 0.00 4.00
5751 6304 2.768527 CTCCCAAGATCTCTGCAGGTAA 59.231 50.000 15.13 0.00 0.00 2.85
5755 6308 5.059833 CCCAAGATCTCTGCAGGTAATAAC 58.940 45.833 15.13 0.00 0.00 1.89
5759 6312 6.412362 AGATCTCTGCAGGTAATAACGATT 57.588 37.500 15.13 0.00 0.00 3.34
5762 6315 6.954487 TCTCTGCAGGTAATAACGATTAGA 57.046 37.500 15.13 1.09 0.00 2.10
5795 6348 1.978617 CAATTCGCTGCCCAAGGGT 60.979 57.895 7.05 0.00 39.79 4.34
5859 6412 4.081420 GTGACAATGAGGAGCTAAAGAGGA 60.081 45.833 0.00 0.00 0.00 3.71
5861 6414 5.190528 TGACAATGAGGAGCTAAAGAGGAAT 59.809 40.000 0.00 0.00 0.00 3.01
5867 6420 2.633488 GAGCTAAAGAGGAATTGCCGT 58.367 47.619 0.00 0.00 43.43 5.68
5904 6457 9.750125 GAACCATCCCAAAGATCATAATTTAAC 57.250 33.333 0.00 0.00 30.59 2.01
5923 6476 2.568623 CCTGACCAAAGGTAACAGCT 57.431 50.000 0.00 0.00 35.25 4.24
5924 6477 2.154462 CCTGACCAAAGGTAACAGCTG 58.846 52.381 13.48 13.48 35.25 4.24
5964 6521 3.430453 TCACTAATTTCCCCTGCCTTTG 58.570 45.455 0.00 0.00 0.00 2.77
6038 6595 0.251922 ATTGCTGCCATTCCACCTGT 60.252 50.000 0.00 0.00 0.00 4.00
6044 6601 3.685550 GCTGCCATTCCACCTGTATAACT 60.686 47.826 0.00 0.00 0.00 2.24
6065 6936 2.829720 TCACTCCCATACACACCTGTAC 59.170 50.000 0.00 0.00 35.63 2.90
6068 6939 3.908103 ACTCCCATACACACCTGTACTTT 59.092 43.478 0.00 0.00 35.63 2.66
6071 6942 4.348461 TCCCATACACACCTGTACTTTCAA 59.652 41.667 0.00 0.00 35.63 2.69
6085 6956 7.698130 CCTGTACTTTCAAAAACTATAGCATGC 59.302 37.037 10.51 10.51 0.00 4.06
6089 6960 5.581126 TTCAAAAACTATAGCATGCCCAG 57.419 39.130 15.66 11.53 0.00 4.45
6128 7001 2.286365 TGCTTTCCCTTGTTACCAGG 57.714 50.000 0.00 0.00 0.00 4.45
6177 7053 1.202568 TCAATATCGTGCAGGGCTCTG 60.203 52.381 10.01 10.01 43.64 3.35
6184 7060 0.536006 GTGCAGGGCTCTGTGTCTTT 60.536 55.000 16.66 0.00 42.78 2.52
6197 7090 6.360370 TCTGTGTCTTTTAGCCTTGTAGAT 57.640 37.500 0.00 0.00 0.00 1.98
6252 7349 3.189287 GGCTTGTGTGGTATCTTTCTGTG 59.811 47.826 0.00 0.00 0.00 3.66
6267 7364 7.377766 TCTTTCTGTGCATAAATCAGGTAAC 57.622 36.000 0.00 0.00 0.00 2.50
6334 7432 1.203065 GCAAACTGCAGTTCACTTGC 58.797 50.000 31.20 29.67 44.26 4.01
6344 7442 3.365364 GCAGTTCACTTGCATAACCACTC 60.365 47.826 0.00 0.00 0.00 3.51
6352 7450 5.009631 ACTTGCATAACCACTCAAGCATTA 58.990 37.500 0.00 0.00 39.45 1.90
6371 7469 7.141363 AGCATTATCTGTTTTGTTCAGTTCAC 58.859 34.615 0.00 0.00 34.86 3.18
6376 7474 4.638421 TCTGTTTTGTTCAGTTCACCGAAT 59.362 37.500 0.00 0.00 34.86 3.34
6398 9249 7.149080 CGAATTTACTGCAGTTTCACTTGAATG 60.149 37.037 27.06 3.94 33.54 2.67
6399 9250 3.996150 ACTGCAGTTTCACTTGAATGG 57.004 42.857 15.25 0.00 33.54 3.16
6400 9251 3.554934 ACTGCAGTTTCACTTGAATGGA 58.445 40.909 15.25 0.00 33.54 3.41
6415 9268 7.596248 CACTTGAATGGACCTCTTGTTTTAATG 59.404 37.037 0.00 0.00 0.00 1.90
6425 9278 5.335661 CCTCTTGTTTTAATGTACCCTGCAC 60.336 44.000 0.00 0.00 0.00 4.57
6426 9279 5.133941 TCTTGTTTTAATGTACCCTGCACA 58.866 37.500 0.00 0.00 0.00 4.57
6427 9280 5.772672 TCTTGTTTTAATGTACCCTGCACAT 59.227 36.000 0.00 0.00 38.25 3.21
6437 9290 1.421268 ACCCTGCACATCAGTTCTTCA 59.579 47.619 0.00 0.00 41.25 3.02
6472 9325 6.436027 TCTTCTAGCCTCTTAGAATCCAAGA 58.564 40.000 0.00 0.00 38.58 3.02
6474 9327 6.472686 TCTAGCCTCTTAGAATCCAAGAAC 57.527 41.667 0.00 0.00 31.84 3.01
6477 9338 3.866327 GCCTCTTAGAATCCAAGAACGTC 59.134 47.826 0.00 0.00 31.84 4.34
6500 9361 2.289819 CCAAGTTGCCAATGGAAGCATT 60.290 45.455 2.05 0.00 39.11 3.56
6554 9611 9.144747 GTACATAAATCTGGTCAGTATATGCAG 57.855 37.037 0.00 0.00 0.00 4.41
6566 9623 7.069950 GGTCAGTATATGCAGTATCATCCCATA 59.930 40.741 0.00 0.00 0.00 2.74
6628 9851 2.285083 GTTGGGTTTTGGTTTGCCTTC 58.715 47.619 0.00 0.00 35.27 3.46
6644 9867 8.745590 GGTTTGCCTTCTTACCAGATTATTTAA 58.254 33.333 0.00 0.00 0.00 1.52
6707 9930 3.119101 GCCTCGGAGTTGTAATTCTCTGA 60.119 47.826 4.02 3.99 41.80 3.27
6713 9936 5.500931 CGGAGTTGTAATTCTCTGAATTCGC 60.501 44.000 8.56 5.18 38.82 4.70
6714 9937 5.351465 GGAGTTGTAATTCTCTGAATTCGCA 59.649 40.000 8.56 7.24 0.00 5.10
6749 9972 8.549548 CACAGTTCTCATATCATTGATTGAGTC 58.450 37.037 23.31 19.55 37.89 3.36
6753 9976 5.693555 TCTCATATCATTGATTGAGTCGCAC 59.306 40.000 23.31 0.00 37.89 5.34
6779 10003 2.700371 CTCCTGTATACATGACTGGCCA 59.300 50.000 4.71 4.71 36.22 5.36
6786 10010 2.359107 ATGACTGGCCAGCACACG 60.359 61.111 33.06 9.52 0.00 4.49
6789 10013 3.521529 GACTGGCCAGCACACGACT 62.522 63.158 33.06 10.64 0.00 4.18
6820 10044 4.141482 TGTCTTTTCCTAAGTGGCAAGACT 60.141 41.667 18.57 0.00 45.89 3.24
6826 10050 2.146342 CTAAGTGGCAAGACTGGTGTG 58.854 52.381 0.00 0.00 0.00 3.82
6833 10057 2.498167 GCAAGACTGGTGTGACTCAAT 58.502 47.619 0.00 0.00 0.00 2.57
6895 10132 7.280876 TGAATCTGTTTGAATATCCACTACTGC 59.719 37.037 0.00 0.00 0.00 4.40
6908 10145 3.632145 CCACTACTGCATGGGATAAAACC 59.368 47.826 0.00 0.00 31.83 3.27
6910 10147 2.799126 ACTGCATGGGATAAAACCGA 57.201 45.000 0.00 0.00 0.00 4.69
6937 10175 5.595542 TCGTTAGTTATTCTAAGCCTAGCCA 59.404 40.000 0.00 0.00 39.03 4.75
6957 10231 6.354130 AGCCACTTTTAAGTCACTTTACAGA 58.646 36.000 0.00 0.00 37.08 3.41
6963 10237 3.857157 AAGTCACTTTACAGAAGGCCA 57.143 42.857 5.01 0.00 0.00 5.36
6965 10239 4.373156 AGTCACTTTACAGAAGGCCATT 57.627 40.909 5.01 0.00 0.00 3.16
6990 10264 1.772063 GCGCGCGAAAACCTATGGAT 61.772 55.000 37.18 0.00 0.00 3.41
6993 10267 2.480845 GCGCGAAAACCTATGGATAGT 58.519 47.619 12.10 0.00 0.00 2.12
7028 10302 1.001406 AGGCTACAGATGATTAGGCGC 59.999 52.381 0.00 0.00 43.80 6.53
7055 10329 4.504165 CCTGGTGGTCAGTATGTGTGTTAA 60.504 45.833 0.00 0.00 41.83 2.01
7080 10354 5.772672 TCCATTGTTAATTAGTTGTGTGCCT 59.227 36.000 0.00 0.00 0.00 4.75
7083 10357 5.431420 TGTTAATTAGTTGTGTGCCTGTG 57.569 39.130 0.00 0.00 0.00 3.66
7103 10377 3.693085 GTGACTCTGCAACCAATCATGAT 59.307 43.478 1.18 1.18 0.00 2.45
7114 10388 9.571816 TGCAACCAATCATGATTCTATATACAA 57.428 29.630 18.16 0.00 0.00 2.41
7154 10428 6.083630 GCAATTTCCGCGCTATTATGAAATA 58.916 36.000 14.62 0.00 35.28 1.40
7164 10438 7.462856 CGCGCTATTATGAAATATCAGGTACAC 60.463 40.741 5.56 0.00 39.39 2.90
7189 10466 6.958193 CGTTTCAGAGAAGTTAATGAGCAATC 59.042 38.462 0.00 0.00 0.00 2.67
7213 10490 8.184304 TCTAATTCCTAAGAAGGTATGAGCTC 57.816 38.462 6.82 6.82 44.09 4.09
7220 10497 7.015682 TCCTAAGAAGGTATGAGCTCTATTTGG 59.984 40.741 16.19 7.49 44.09 3.28
7272 10551 9.820229 TTTTATCACTTGTTTATGCTAAAGTCG 57.180 29.630 0.00 0.00 30.59 4.18
7291 10570 4.462834 AGTCGTCTTGATGTGGAGATTACA 59.537 41.667 0.00 0.00 0.00 2.41
7295 10577 5.431765 GTCTTGATGTGGAGATTACACCAT 58.568 41.667 0.00 0.00 38.83 3.55
7302 10584 9.050154 TGATGTGGAGATTACACCATGATATAT 57.950 33.333 0.00 0.00 38.83 0.86
7359 10641 5.186215 GGTTGAGTTCTCTAGCTCCTAAAGT 59.814 44.000 0.00 0.00 0.00 2.66
7360 10642 6.377712 GGTTGAGTTCTCTAGCTCCTAAAGTA 59.622 42.308 0.00 0.00 0.00 2.24
7361 10643 7.068962 GGTTGAGTTCTCTAGCTCCTAAAGTAT 59.931 40.741 0.00 0.00 0.00 2.12
7362 10644 8.471609 GTTGAGTTCTCTAGCTCCTAAAGTATT 58.528 37.037 0.00 0.00 0.00 1.89
7363 10645 8.228035 TGAGTTCTCTAGCTCCTAAAGTATTC 57.772 38.462 0.00 0.00 0.00 1.75
7429 10714 9.749490 GGTAAAACTTCTTTTGCTGTTAAAAAC 57.251 29.630 0.00 0.00 33.68 2.43
7464 10749 6.746745 AAGAAAAGTGTTGTTACTTTCCGA 57.253 33.333 4.57 0.00 46.96 4.55
7466 10751 8.441312 AAGAAAAGTGTTGTTACTTTCCGATA 57.559 30.769 4.57 0.00 46.96 2.92
7495 10780 4.019174 CACATTCCATTTCCCAGCTAGTT 58.981 43.478 0.00 0.00 0.00 2.24
7584 10870 3.515104 CCAAAAACTGGGCCAGTAATCAT 59.485 43.478 37.74 20.48 44.62 2.45
7642 11024 2.425143 AGTGCACTCCCATATGGTTG 57.575 50.000 20.46 14.46 34.77 3.77
7715 11100 5.036117 AGAGGTTTTCTGTAACAGAGCAA 57.964 39.130 0.00 0.00 41.75 3.91
7722 11107 3.728845 TCTGTAACAGAGCAACAACTCC 58.271 45.455 0.00 0.00 35.39 3.85
7741 11127 1.671850 CCGACACACTGCTTTCCGTAT 60.672 52.381 0.00 0.00 0.00 3.06
7774 11166 0.591659 GAAGTTGGAAAGGTGGACGC 59.408 55.000 0.00 0.00 0.00 5.19
7848 11251 0.178967 TGGCTGACCTGAAATTGGCA 60.179 50.000 0.00 0.00 36.63 4.92
7878 11281 3.696548 AGCAGTTCCTAGCAAATAAAGGC 59.303 43.478 0.00 0.00 0.00 4.35
7879 11282 3.181486 GCAGTTCCTAGCAAATAAAGGCC 60.181 47.826 0.00 0.00 0.00 5.19
7881 11284 4.096984 CAGTTCCTAGCAAATAAAGGCCTG 59.903 45.833 5.69 0.00 0.00 4.85
7914 11337 5.106237 CCTCTGTACTGTGTACCTTAGTCAC 60.106 48.000 5.55 0.00 0.00 3.67
7955 11378 0.326595 TTAGAGCGGGCATCAAACCA 59.673 50.000 0.00 0.00 0.00 3.67
7962 11385 4.151883 AGCGGGCATCAAACCAATATATT 58.848 39.130 0.00 0.00 0.00 1.28
7988 11411 5.362430 GGTTATATGCCCTGAAACCATTGAA 59.638 40.000 0.00 0.00 39.51 2.69
8025 11448 5.535753 AATTCTTTCCAGGTTGAGTTTGG 57.464 39.130 0.00 0.00 0.00 3.28
8031 11454 1.152546 AGGTTGAGTTTGGTGGGGC 60.153 57.895 0.00 0.00 0.00 5.80
8033 11456 0.111639 GGTTGAGTTTGGTGGGGCTA 59.888 55.000 0.00 0.00 0.00 3.93
8050 11473 1.985447 CTACTCTACGGTGCGGCGAA 61.985 60.000 12.98 0.00 0.00 4.70
8054 11477 0.386476 TCTACGGTGCGGCGAATATT 59.614 50.000 12.98 0.00 0.00 1.28
8079 11502 2.030007 CGGTGTGCAAGATTGGTGATTT 60.030 45.455 0.00 0.00 0.00 2.17
8089 11514 6.290605 CAAGATTGGTGATTTTCCAAAAGGT 58.709 36.000 1.55 0.00 46.07 3.50
8090 11515 7.441017 CAAGATTGGTGATTTTCCAAAAGGTA 58.559 34.615 1.55 0.00 46.07 3.08
8121 11546 2.896044 TGGAACTGCCATACATTTTGCA 59.104 40.909 0.00 0.00 43.33 4.08
8127 11552 4.357142 CTGCCATACATTTTGCAGTGATC 58.643 43.478 0.00 0.00 44.69 2.92
8128 11553 3.762823 TGCCATACATTTTGCAGTGATCA 59.237 39.130 0.00 0.00 0.00 2.92
8130 11555 4.142315 GCCATACATTTTGCAGTGATCAGT 60.142 41.667 0.00 0.00 0.00 3.41
8132 11557 5.356190 CCATACATTTTGCAGTGATCAGTCT 59.644 40.000 0.00 0.00 0.00 3.24
8146 11642 8.976471 CAGTGATCAGTCTACAATCATGATAAC 58.024 37.037 9.04 3.18 33.59 1.89
8151 11647 3.746492 GTCTACAATCATGATAACCCGCC 59.254 47.826 9.04 0.00 0.00 6.13
8156 11652 3.864789 ATCATGATAACCCGCCTTTCT 57.135 42.857 6.36 0.00 0.00 2.52
8174 11670 1.068588 TCTATTTATGCCGCGCTCAGT 59.931 47.619 5.56 0.00 0.00 3.41
8176 11672 0.179073 ATTTATGCCGCGCTCAGTCT 60.179 50.000 5.56 0.00 0.00 3.24
8186 11682 4.438336 GCCGCGCTCAGTCTATGTATAATA 60.438 45.833 5.56 0.00 0.00 0.98
8188 11684 6.266323 CCGCGCTCAGTCTATGTATAATATT 58.734 40.000 5.56 0.00 0.00 1.28
8208 11704 0.464373 AGTTGGTGTGCCTGTGACAG 60.464 55.000 5.42 5.42 35.27 3.51
8230 11726 1.683025 TGATGGTGCATTGCAGGGG 60.683 57.895 12.53 0.00 40.08 4.79
8234 11730 3.818787 GTGCATTGCAGGGGAGCG 61.819 66.667 12.53 0.00 40.08 5.03
8246 11742 2.786495 GGGAGCGCGGATTCTCAGA 61.786 63.158 8.83 0.00 0.00 3.27
8272 11768 3.310860 GATCGAGGGCCCGTTGTGT 62.311 63.158 18.44 0.00 0.00 3.72
8273 11769 3.605749 ATCGAGGGCCCGTTGTGTG 62.606 63.158 18.44 2.17 0.00 3.82
8337 21797 6.825213 TGACATCTGTGCTAGCAAGATTAAAT 59.175 34.615 26.35 17.61 0.00 1.40
8341 21801 4.985413 TGTGCTAGCAAGATTAAATGCAC 58.015 39.130 21.29 3.31 44.95 4.57
8353 21813 9.277565 CAAGATTAAATGCACACTGTAATGTAC 57.722 33.333 0.00 0.00 0.00 2.90
8439 21902 1.079825 TCAGTAGGGAAAGTAGGGGCA 59.920 52.381 0.00 0.00 0.00 5.36
8440 21903 1.486726 CAGTAGGGAAAGTAGGGGCAG 59.513 57.143 0.00 0.00 0.00 4.85
8446 21909 3.204467 AAAGTAGGGGCAGCGGCAA 62.204 57.895 11.88 0.00 43.71 4.52
8465 21932 1.941377 ACATTTGCATCACCCATGGT 58.059 45.000 11.73 0.00 35.62 3.55
8499 21972 0.592148 AGTCGAAGTCGTGGACAGAC 59.408 55.000 3.98 5.09 37.43 3.51
8504 21977 2.314122 GAAGTCGTGGACAGACGTAAC 58.686 52.381 0.00 0.00 42.97 2.50
8523 21996 2.510238 GAGCAGTCGCGCCAAGAT 60.510 61.111 0.00 0.00 45.49 2.40
8528 22001 2.510238 GTCGCGCCAAGATGCTCT 60.510 61.111 0.00 0.00 0.00 4.09
8530 22003 3.267860 CGCGCCAAGATGCTCTCC 61.268 66.667 0.00 0.00 0.00 3.71
8542 22016 2.579207 TGCTCTCCGAAACCTTATCG 57.421 50.000 0.00 0.00 39.92 2.92
8567 22041 2.436646 CCCGGTGCAGGATCACAC 60.437 66.667 0.00 0.00 38.66 3.82
8578 22052 1.577328 GGATCACACAGGGCACAACG 61.577 60.000 0.00 0.00 0.00 4.10
8582 22056 2.587753 CACAGGGCACAACGACGT 60.588 61.111 0.00 0.00 0.00 4.34
8587 22061 3.351416 GGCACAACGACGTTCCCC 61.351 66.667 10.95 7.60 0.00 4.81
8596 24538 1.287041 CGACGTTCCCCGAAAACCTC 61.287 60.000 0.00 0.00 40.70 3.85
8629 28467 0.960364 GCAGGATCACAAAAGGGCGA 60.960 55.000 0.00 0.00 0.00 5.54
8662 28500 2.667418 GGGAGCAGCAGCAAGAGA 59.333 61.111 3.17 0.00 45.49 3.10
8666 28504 1.233019 GAGCAGCAGCAAGAGAAACA 58.767 50.000 3.17 0.00 45.49 2.83
8667 28505 1.605710 GAGCAGCAGCAAGAGAAACAA 59.394 47.619 3.17 0.00 45.49 2.83
8679 28517 7.277981 CAGCAAGAGAAACAACGGTATATAGTT 59.722 37.037 0.00 0.00 0.00 2.24
8750 28592 2.411409 GCCAAATAAAATGCACACACGG 59.589 45.455 0.00 0.00 0.00 4.94
8781 28623 1.067915 AGCTCAGCTCTTCTCGTTCAC 60.068 52.381 0.00 0.00 30.62 3.18
8782 28624 1.336332 GCTCAGCTCTTCTCGTTCACA 60.336 52.381 0.00 0.00 0.00 3.58
8783 28625 2.864097 GCTCAGCTCTTCTCGTTCACAA 60.864 50.000 0.00 0.00 0.00 3.33
8828 28670 0.818296 GGAGGAGCGTGTGTATCACT 59.182 55.000 1.72 0.00 44.16 3.41
8838 28680 3.181495 CGTGTGTATCACTCCTCTTCTCC 60.181 52.174 1.72 0.00 44.16 3.71
8863 28705 4.835615 GCTCTAATAGGATGTGGAGGAGAA 59.164 45.833 0.00 0.00 0.00 2.87
8921 28779 2.239654 ACTCCCGACCATGTCATGAAAT 59.760 45.455 14.67 0.00 32.09 2.17
8927 28785 4.509230 CCGACCATGTCATGAAATCACTAG 59.491 45.833 14.67 0.00 32.09 2.57
8941 28799 1.000506 TCACTAGTGGGCGTTTCAGAC 59.999 52.381 22.48 0.00 0.00 3.51
8958 28816 7.538678 CGTTTCAGACTTTCCAGGAAATAATTG 59.461 37.037 15.38 11.17 30.85 2.32
9028 28982 5.010282 AGGAACACCCATTAGTCACAAATC 58.990 41.667 0.00 0.00 37.41 2.17
9054 29008 9.294030 CATATTTTCAGAATTGGTTTGTAGAGC 57.706 33.333 0.00 0.00 0.00 4.09
9135 29093 9.710900 AAAACTCACTCAAAAATTATCCCAATC 57.289 29.630 0.00 0.00 0.00 2.67
9141 29099 8.863049 CACTCAAAAATTATCCCAATCTTTTCG 58.137 33.333 0.00 0.00 0.00 3.46
9146 29104 8.614469 AAAATTATCCCAATCTTTTCGCAAAA 57.386 26.923 0.00 0.00 0.00 2.44
9148 29106 9.883142 AAATTATCCCAATCTTTTCGCAAAATA 57.117 25.926 0.00 0.00 0.00 1.40
9260 29234 1.079503 CCTAAAACACGCAGGAGAGC 58.920 55.000 0.00 0.00 0.00 4.09
9261 29235 1.338200 CCTAAAACACGCAGGAGAGCT 60.338 52.381 0.00 0.00 0.00 4.09
9263 29237 1.510480 AAAACACGCAGGAGAGCTGC 61.510 55.000 0.00 0.00 43.74 5.25
9277 29251 4.765856 GGAGAGCTGCATATCATTCCATTT 59.234 41.667 1.02 0.00 0.00 2.32
9279 29253 6.432162 GGAGAGCTGCATATCATTCCATTTAA 59.568 38.462 1.02 0.00 0.00 1.52
9280 29254 7.361885 GGAGAGCTGCATATCATTCCATTTAAG 60.362 40.741 1.02 0.00 0.00 1.85
9281 29255 7.229308 AGAGCTGCATATCATTCCATTTAAGA 58.771 34.615 1.02 0.00 0.00 2.10
9282 29256 7.889073 AGAGCTGCATATCATTCCATTTAAGAT 59.111 33.333 1.02 0.00 0.00 2.40
9309 29283 7.805083 ATATAGAAGTACAGAGGATTGCCAT 57.195 36.000 0.00 0.00 36.29 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 2.158827 TGTTACTTTCAGGCAGCAGTGA 60.159 45.455 0.00 0.00 0.00 3.41
4 5 2.221169 TGTTACTTTCAGGCAGCAGTG 58.779 47.619 0.00 0.00 0.00 3.66
6 7 2.421424 GGATGTTACTTTCAGGCAGCAG 59.579 50.000 0.00 0.00 0.00 4.24
7 8 2.040278 AGGATGTTACTTTCAGGCAGCA 59.960 45.455 0.00 0.00 0.00 4.41
8 9 2.680339 GAGGATGTTACTTTCAGGCAGC 59.320 50.000 0.00 0.00 0.00 5.25
9 10 3.274288 GGAGGATGTTACTTTCAGGCAG 58.726 50.000 0.00 0.00 0.00 4.85
10 11 2.026262 GGGAGGATGTTACTTTCAGGCA 60.026 50.000 0.00 0.00 0.00 4.75
11 12 2.026262 TGGGAGGATGTTACTTTCAGGC 60.026 50.000 0.00 0.00 0.00 4.85
12 13 3.264450 AGTGGGAGGATGTTACTTTCAGG 59.736 47.826 0.00 0.00 0.00 3.86
13 14 4.559862 AGTGGGAGGATGTTACTTTCAG 57.440 45.455 0.00 0.00 0.00 3.02
14 15 5.091552 ACTAGTGGGAGGATGTTACTTTCA 58.908 41.667 0.00 0.00 0.00 2.69
15 16 5.678955 ACTAGTGGGAGGATGTTACTTTC 57.321 43.478 0.00 0.00 0.00 2.62
16 17 8.287350 TCTATACTAGTGGGAGGATGTTACTTT 58.713 37.037 5.39 0.00 0.00 2.66
17 18 7.823635 TCTATACTAGTGGGAGGATGTTACTT 58.176 38.462 5.39 0.00 0.00 2.24
18 19 7.295196 TCTCTATACTAGTGGGAGGATGTTACT 59.705 40.741 5.39 0.00 0.00 2.24
57 58 2.079020 TTGCAGGCACAAGCTCTTGC 62.079 55.000 10.40 10.40 44.03 4.01
58 59 0.386476 TTTGCAGGCACAAGCTCTTG 59.614 50.000 7.99 7.99 45.58 3.02
61 62 0.598419 GGTTTTGCAGGCACAAGCTC 60.598 55.000 13.35 0.00 41.70 4.09
86 87 4.926860 TCAAGTAACTGCATCGAATGTG 57.073 40.909 0.00 0.00 0.00 3.21
98 99 7.436080 CACAGCACAATTTTCATTCAAGTAACT 59.564 33.333 0.00 0.00 0.00 2.24
126 127 9.899226 ATTTCTTTCTAGCAACACAAAGAATAC 57.101 29.630 12.81 0.00 41.92 1.89
148 149 2.450476 AGCAGGATTGGGTGTGATTTC 58.550 47.619 0.00 0.00 0.00 2.17
149 150 2.610438 AGCAGGATTGGGTGTGATTT 57.390 45.000 0.00 0.00 0.00 2.17
151 152 5.319453 CAATATAGCAGGATTGGGTGTGAT 58.681 41.667 0.00 0.00 30.80 3.06
152 153 4.446167 CCAATATAGCAGGATTGGGTGTGA 60.446 45.833 13.14 0.00 45.67 3.58
175 176 9.453325 CGAGAAGTATTTAGGATTACTCTGTTC 57.547 37.037 0.00 0.00 0.00 3.18
185 186 4.262249 GCCTGCTCGAGAAGTATTTAGGAT 60.262 45.833 19.35 0.00 0.00 3.24
186 187 3.068307 GCCTGCTCGAGAAGTATTTAGGA 59.932 47.826 19.35 0.00 0.00 2.94
187 188 3.181475 TGCCTGCTCGAGAAGTATTTAGG 60.181 47.826 19.35 3.94 0.00 2.69
188 189 4.046938 TGCCTGCTCGAGAAGTATTTAG 57.953 45.455 19.35 3.78 0.00 1.85
189 190 4.465632 TTGCCTGCTCGAGAAGTATTTA 57.534 40.909 19.35 0.00 0.00 1.40
191 192 3.055819 TCTTTGCCTGCTCGAGAAGTATT 60.056 43.478 19.35 0.00 0.00 1.89
195 359 2.021355 ATCTTTGCCTGCTCGAGAAG 57.979 50.000 18.75 16.29 0.00 2.85
202 366 7.228308 GTCTAGAATTATCAATCTTTGCCTGCT 59.772 37.037 0.00 0.00 0.00 4.24
215 379 8.696374 CCCTACAGTCTTTGTCTAGAATTATCA 58.304 37.037 0.00 0.00 41.29 2.15
223 387 4.087182 TGTCCCCTACAGTCTTTGTCTAG 58.913 47.826 0.00 0.00 41.29 2.43
225 389 2.972348 TGTCCCCTACAGTCTTTGTCT 58.028 47.619 0.00 0.00 41.29 3.41
232 396 8.196378 AGAAATCTATATTGTCCCCTACAGTC 57.804 38.462 0.00 0.00 39.87 3.51
233 397 8.568617 AAGAAATCTATATTGTCCCCTACAGT 57.431 34.615 0.00 0.00 39.87 3.55
234 398 9.853177 AAAAGAAATCTATATTGTCCCCTACAG 57.147 33.333 0.00 0.00 39.87 2.74
238 402 7.661847 CGCTAAAAGAAATCTATATTGTCCCCT 59.338 37.037 0.00 0.00 0.00 4.79
239 403 7.660208 TCGCTAAAAGAAATCTATATTGTCCCC 59.340 37.037 0.00 0.00 0.00 4.81
243 407 7.095607 CGGCTCGCTAAAAGAAATCTATATTGT 60.096 37.037 0.00 0.00 0.00 2.71
244 408 7.230222 CGGCTCGCTAAAAGAAATCTATATTG 58.770 38.462 0.00 0.00 0.00 1.90
245 409 6.369065 CCGGCTCGCTAAAAGAAATCTATATT 59.631 38.462 0.00 0.00 0.00 1.28
246 410 5.869888 CCGGCTCGCTAAAAGAAATCTATAT 59.130 40.000 0.00 0.00 0.00 0.86
247 411 5.221382 ACCGGCTCGCTAAAAGAAATCTATA 60.221 40.000 0.00 0.00 0.00 1.31
248 412 4.058817 CCGGCTCGCTAAAAGAAATCTAT 58.941 43.478 0.00 0.00 0.00 1.98
255 419 0.669318 CACACCGGCTCGCTAAAAGA 60.669 55.000 0.00 0.00 0.00 2.52
264 428 0.096454 GTATTTTCGCACACCGGCTC 59.904 55.000 0.00 0.00 37.59 4.70
269 433 1.401018 GGCTGTGTATTTTCGCACACC 60.401 52.381 2.69 0.00 43.54 4.16
270 434 1.724654 CGGCTGTGTATTTTCGCACAC 60.725 52.381 0.00 0.00 44.26 3.82
281 445 3.056458 CACAGGTCCGGCTGTGTA 58.944 61.111 25.66 0.00 44.07 2.90
286 450 1.682684 CCTAGACACAGGTCCGGCT 60.683 63.158 0.00 0.00 45.48 5.52
287 451 2.893398 CCTAGACACAGGTCCGGC 59.107 66.667 0.00 0.00 45.48 6.13
289 453 2.490217 CGCCTAGACACAGGTCCG 59.510 66.667 0.00 0.00 45.48 4.79
291 455 1.446272 GTGCGCCTAGACACAGGTC 60.446 63.158 4.18 0.00 44.66 3.85
297 461 1.895020 AATTCGGGTGCGCCTAGACA 61.895 55.000 17.49 7.71 34.45 3.41
345 509 9.737427 CAGGAGTAATACACTAGACAATACTTG 57.263 37.037 0.00 0.00 37.72 3.16
348 512 8.684520 ACACAGGAGTAATACACTAGACAATAC 58.315 37.037 0.00 0.00 37.72 1.89
349 513 8.818622 ACACAGGAGTAATACACTAGACAATA 57.181 34.615 0.00 0.00 37.72 1.90
351 515 8.640063 TTACACAGGAGTAATACACTAGACAA 57.360 34.615 0.00 0.00 37.72 3.18
352 516 8.640063 TTTACACAGGAGTAATACACTAGACA 57.360 34.615 0.00 0.00 37.72 3.41
353 517 8.738106 ACTTTACACAGGAGTAATACACTAGAC 58.262 37.037 0.00 0.00 37.72 2.59
354 518 8.874744 ACTTTACACAGGAGTAATACACTAGA 57.125 34.615 0.00 0.00 37.72 2.43
355 519 9.924650 AAACTTTACACAGGAGTAATACACTAG 57.075 33.333 0.00 0.00 37.72 2.57
357 521 7.597743 CGAAACTTTACACAGGAGTAATACACT 59.402 37.037 0.00 0.00 41.47 3.55
358 522 7.620806 GCGAAACTTTACACAGGAGTAATACAC 60.621 40.741 0.00 0.00 34.25 2.90
361 525 5.574055 CGCGAAACTTTACACAGGAGTAATA 59.426 40.000 0.00 0.00 34.25 0.98
363 527 3.737266 CGCGAAACTTTACACAGGAGTAA 59.263 43.478 0.00 0.00 32.46 2.24
364 528 3.004629 TCGCGAAACTTTACACAGGAGTA 59.995 43.478 6.20 0.00 0.00 2.59
365 529 2.132762 CGCGAAACTTTACACAGGAGT 58.867 47.619 0.00 0.00 0.00 3.85
366 530 2.155155 GTCGCGAAACTTTACACAGGAG 59.845 50.000 12.06 0.00 0.00 3.69
369 533 3.579147 TTGTCGCGAAACTTTACACAG 57.421 42.857 12.06 0.00 0.00 3.66
370 534 4.337985 TTTTGTCGCGAAACTTTACACA 57.662 36.364 12.06 0.00 0.00 3.72
386 569 6.432783 TCCGAATACCATGAAAGTCATTTTGT 59.567 34.615 0.00 0.00 34.28 2.83
399 582 6.920758 TGTTTTTCTTTGTTCCGAATACCATG 59.079 34.615 0.00 0.00 0.00 3.66
400 583 7.045126 TGTTTTTCTTTGTTCCGAATACCAT 57.955 32.000 0.00 0.00 0.00 3.55
414 597 9.990360 AATATGGTATCGGTTTTGTTTTTCTTT 57.010 25.926 0.00 0.00 0.00 2.52
438 621 6.569179 AAGTGTGCGAATGGTAAGTTTAAT 57.431 33.333 0.00 0.00 0.00 1.40
449 632 3.058983 TGCAAGTAGAAAGTGTGCGAATG 60.059 43.478 0.00 0.00 38.05 2.67
454 637 3.691049 TGTTGCAAGTAGAAAGTGTGC 57.309 42.857 0.00 0.00 35.75 4.57
459 642 6.507023 AGGACAAAATGTTGCAAGTAGAAAG 58.493 36.000 0.00 0.00 38.39 2.62
463 646 7.538303 AAAAAGGACAAAATGTTGCAAGTAG 57.462 32.000 0.00 0.00 38.39 2.57
507 690 7.740346 GTGTATTACTCACGTCAGAACAAAATG 59.260 37.037 0.00 0.00 0.00 2.32
508 691 7.656137 AGTGTATTACTCACGTCAGAACAAAAT 59.344 33.333 0.00 0.00 40.28 1.82
515 698 6.168389 TGTCTAGTGTATTACTCACGTCAGA 58.832 40.000 0.00 0.00 40.89 3.27
520 703 6.266323 AGCATTGTCTAGTGTATTACTCACG 58.734 40.000 0.00 0.00 40.89 4.35
521 704 7.899974 CAAGCATTGTCTAGTGTATTACTCAC 58.100 38.462 0.00 0.00 42.34 3.51
590 782 4.734695 GCTGGAGCGGATTTTTGGAAATAG 60.735 45.833 0.00 0.00 35.65 1.73
608 800 1.216064 ATAGCTCCACATTGGCTGGA 58.784 50.000 0.00 0.00 37.47 3.86
615 807 7.017551 TCCTTCATACCAATATAGCTCCACATT 59.982 37.037 0.00 0.00 0.00 2.71
616 808 6.501805 TCCTTCATACCAATATAGCTCCACAT 59.498 38.462 0.00 0.00 0.00 3.21
621 813 8.200792 CCATACTCCTTCATACCAATATAGCTC 58.799 40.741 0.00 0.00 0.00 4.09
633 825 9.618890 CTTTTTCTCATTCCATACTCCTTCATA 57.381 33.333 0.00 0.00 0.00 2.15
727 938 7.027778 TCTTTTTCTGAGGTAAAGCAAAGAC 57.972 36.000 0.00 0.00 0.00 3.01
834 1046 5.310331 TGATGGAGAGGTGGCAATGAATATA 59.690 40.000 0.00 0.00 0.00 0.86
874 1086 2.202236 CTCCAAGGCAAGGCAGGCTA 62.202 60.000 0.00 0.00 44.47 3.93
876 1088 3.066814 CTCCAAGGCAAGGCAGGC 61.067 66.667 0.00 0.00 0.00 4.85
877 1089 2.202236 TAGCTCCAAGGCAAGGCAGG 62.202 60.000 0.00 0.00 34.17 4.85
878 1090 0.747283 CTAGCTCCAAGGCAAGGCAG 60.747 60.000 0.00 0.00 34.17 4.85
879 1091 1.300963 CTAGCTCCAAGGCAAGGCA 59.699 57.895 0.00 0.00 34.17 4.75
880 1092 1.028868 CACTAGCTCCAAGGCAAGGC 61.029 60.000 0.00 0.00 34.17 4.35
881 1093 0.393537 CCACTAGCTCCAAGGCAAGG 60.394 60.000 0.00 0.00 34.17 3.61
882 1094 1.028868 GCCACTAGCTCCAAGGCAAG 61.029 60.000 12.80 0.00 44.59 4.01
883 1095 1.002134 GCCACTAGCTCCAAGGCAA 60.002 57.895 12.80 0.00 44.59 4.52
884 1096 2.671070 GCCACTAGCTCCAAGGCA 59.329 61.111 12.80 0.00 44.59 4.75
885 1097 0.394899 AATGCCACTAGCTCCAAGGC 60.395 55.000 11.26 11.26 45.41 4.35
886 1098 1.673168 GAATGCCACTAGCTCCAAGG 58.327 55.000 0.00 0.00 44.23 3.61
891 1103 1.009829 CAACGGAATGCCACTAGCTC 58.990 55.000 0.00 0.00 44.23 4.09
907 1119 1.700186 AGGAGAGTCCAGAAACCCAAC 59.300 52.381 0.00 0.00 39.61 3.77
955 1198 3.752167 GGAGGAGACCGGGGAGGA 61.752 72.222 6.32 0.00 45.00 3.71
961 1204 0.320771 CAAGTGTTGGAGGAGACCGG 60.321 60.000 0.00 0.00 0.00 5.28
964 1207 1.605712 CCGTCAAGTGTTGGAGGAGAC 60.606 57.143 0.00 0.00 32.12 3.36
1078 1336 1.452833 GTCAGGGGAAGGAGCATGC 60.453 63.158 10.51 10.51 0.00 4.06
1090 1348 2.096496 GCAATGATCGTTCTTGTCAGGG 59.904 50.000 0.00 0.00 0.00 4.45
1091 1349 3.005554 AGCAATGATCGTTCTTGTCAGG 58.994 45.455 0.00 0.00 0.00 3.86
1092 1350 4.400845 CAAGCAATGATCGTTCTTGTCAG 58.599 43.478 20.40 4.13 31.99 3.51
1147 1410 9.097257 CTGCATGTAGAAAAGAAAAAGGAAAAA 57.903 29.630 4.57 0.00 0.00 1.94
1207 1473 2.365635 ACGGCCACCTCCATAGCT 60.366 61.111 2.24 0.00 0.00 3.32
1255 1521 2.224159 ATCTGTCACCGGGGCAAGT 61.224 57.895 6.32 0.00 0.00 3.16
1379 1645 4.864334 GATGTCCCTGCCCTGCCG 62.864 72.222 0.00 0.00 0.00 5.69
1408 1701 3.251509 TGCAGCAGCCCCTTGAGA 61.252 61.111 0.00 0.00 41.13 3.27
1433 1726 2.187946 GACATACGCCAGCTGCCT 59.812 61.111 8.66 0.00 36.24 4.75
1480 1791 1.827399 CGTGGTAGGTGCCTTCCAGT 61.827 60.000 15.54 0.00 42.71 4.00
1579 1890 3.118334 AGGAGCTCATGGACTTGATCTTG 60.118 47.826 17.19 0.00 0.00 3.02
1854 2174 3.443681 CAGTTTTGGTGTTTCCTCTGTGT 59.556 43.478 0.00 0.00 37.07 3.72
2012 2335 3.560636 AGTTTTGGGTCGATCCATAGG 57.439 47.619 20.36 0.00 36.58 2.57
2322 2650 7.133891 TCAATTTGCTCTTCTTTGCTACTAC 57.866 36.000 0.00 0.00 0.00 2.73
2368 2696 6.998074 ACACATCATCCAAGACAAGTAAGAAA 59.002 34.615 0.00 0.00 0.00 2.52
3017 3351 1.429463 GTGTAACGAGGACTGCCAAG 58.571 55.000 0.00 0.00 36.29 3.61
3184 3518 5.467063 CCTCTTGTAGTCTTCAAAAGTCACC 59.533 44.000 0.00 0.00 0.00 4.02
3256 3590 7.649306 GCATGGTATTCTCCAAATAACATCAAC 59.351 37.037 5.55 0.00 38.18 3.18
3445 3788 3.198635 ACACACTAGATATGCACAAGGCT 59.801 43.478 0.00 0.00 45.15 4.58
3447 3790 3.798878 CGACACACTAGATATGCACAAGG 59.201 47.826 0.00 0.00 0.00 3.61
3468 3817 4.944962 TCCAAGTGATAAAATCTGCACG 57.055 40.909 0.00 0.00 36.43 5.34
3538 3887 7.763985 GGCACAATTTTACAAGGTTGCTAATAT 59.236 33.333 0.00 0.00 0.00 1.28
3561 3910 1.449353 GGGGCACAACAAAATGGCA 59.551 52.632 0.00 0.00 42.93 4.92
3673 4028 6.148480 CAGTTTCCCTATTTGACTCAGTTCAG 59.852 42.308 0.00 0.00 0.00 3.02
3687 4042 5.776358 TCCAATATTTGCCAGTTTCCCTAT 58.224 37.500 0.00 0.00 0.00 2.57
3782 4140 5.789643 TTAGCTCTTTCATGTGGCTTTTT 57.210 34.783 0.00 0.00 34.88 1.94
3812 4170 3.126831 GTTAGATCGCTGAACATCCCAG 58.873 50.000 0.00 0.00 34.88 4.45
3897 4259 3.181440 CCTCCATGCCCTCTAATGCTTAA 60.181 47.826 0.00 0.00 0.00 1.85
3926 4288 2.237143 TGAACCTAGCCATCTTGGACAG 59.763 50.000 0.00 0.00 40.96 3.51
3956 4318 7.180766 AGAGAAAGAGATTCCAGATTCTTGACT 59.819 37.037 0.00 0.00 38.94 3.41
4012 4374 3.574826 GACCATCCACACCTCTCCTATAC 59.425 52.174 0.00 0.00 0.00 1.47
4014 4376 2.023015 TGACCATCCACACCTCTCCTAT 60.023 50.000 0.00 0.00 0.00 2.57
4023 4385 3.379372 CCAAGATCATTGACCATCCACAC 59.621 47.826 0.00 0.00 0.00 3.82
4138 4500 5.946377 GGGAACAAATGAGAAGTATTGTCCT 59.054 40.000 0.00 0.00 37.63 3.85
4220 4585 4.356405 TGGCAGACCACTATTATGATGG 57.644 45.455 0.00 0.00 42.67 3.51
4255 4620 2.644798 AGTCTAGGAAACCAAGCCATGT 59.355 45.455 0.00 0.00 0.00 3.21
4324 4689 2.242452 GGGCTAGAAGTCCAAGGGATTT 59.758 50.000 0.00 0.00 40.51 2.17
4374 4739 3.326836 AACTAGCTTCTCAAGACCAGC 57.673 47.619 0.00 0.00 0.00 4.85
4401 4766 1.070758 TGAGTCTGCTCCGCTCTTTTT 59.929 47.619 0.00 0.00 40.95 1.94
4404 4769 0.246086 CTTGAGTCTGCTCCGCTCTT 59.754 55.000 0.00 0.00 40.95 2.85
4408 4773 0.601311 ACAACTTGAGTCTGCTCCGC 60.601 55.000 0.00 0.00 40.95 5.54
4413 4778 1.070309 CAGCGAACAACTTGAGTCTGC 60.070 52.381 0.00 2.12 0.00 4.26
4423 4788 1.264288 CCTTCACTTCCAGCGAACAAC 59.736 52.381 0.00 0.00 0.00 3.32
4452 4817 5.379732 TTCAAAAACAAACTGTCTCGGTT 57.620 34.783 0.00 0.00 34.04 4.44
4453 4818 5.576447 ATTCAAAAACAAACTGTCTCGGT 57.424 34.783 0.00 0.00 0.00 4.69
4456 4821 8.807581 CCAACTTATTCAAAAACAAACTGTCTC 58.192 33.333 0.00 0.00 0.00 3.36
4457 4822 8.311109 ACCAACTTATTCAAAAACAAACTGTCT 58.689 29.630 0.00 0.00 0.00 3.41
4464 4829 9.936759 AGAGAAAACCAACTTATTCAAAAACAA 57.063 25.926 0.00 0.00 0.00 2.83
4515 4880 5.336213 GCAGAGGAGAGCAATTTTCAATGAA 60.336 40.000 0.00 0.00 0.00 2.57
4517 4882 4.158025 AGCAGAGGAGAGCAATTTTCAATG 59.842 41.667 0.00 0.00 0.00 2.82
4520 4885 3.079578 CAGCAGAGGAGAGCAATTTTCA 58.920 45.455 0.00 0.00 0.00 2.69
4521 4886 2.159407 GCAGCAGAGGAGAGCAATTTTC 60.159 50.000 0.00 0.00 0.00 2.29
4544 4909 7.510685 AGAGATGTTAGCATTAGGAGGTTATCA 59.489 37.037 0.00 0.00 35.07 2.15
4548 4913 5.221342 CGAGAGATGTTAGCATTAGGAGGTT 60.221 44.000 0.00 0.00 35.07 3.50
4587 4952 6.832900 TGGGATAATACATTGCTTGAATCACA 59.167 34.615 0.00 0.00 0.00 3.58
4598 4963 7.122650 ACACTTTCAACCTGGGATAATACATTG 59.877 37.037 0.00 0.00 0.00 2.82
4612 4977 2.233271 CATGGCTCACACTTTCAACCT 58.767 47.619 0.00 0.00 0.00 3.50
4633 4998 0.533755 AACAGATAGCAGGCATCCGC 60.534 55.000 0.00 0.00 37.44 5.54
4635 5000 5.590259 TCTTTTTAACAGATAGCAGGCATCC 59.410 40.000 0.00 0.00 0.00 3.51
4647 5012 8.139350 TCGTCTGACACTTATCTTTTTAACAGA 58.861 33.333 8.73 0.00 0.00 3.41
4669 5034 0.881118 ACCATTGCAACCACATCGTC 59.119 50.000 0.00 0.00 0.00 4.20
4670 5035 2.192664 TACCATTGCAACCACATCGT 57.807 45.000 0.00 0.00 0.00 3.73
4747 5112 6.126361 ACCTAGCCATTTTATCTCCTGACAAT 60.126 38.462 0.00 0.00 0.00 2.71
4769 5134 2.223464 ATAATTGCCCCGCCACACCT 62.223 55.000 0.00 0.00 0.00 4.00
4786 5151 5.611128 AGCAGAAGAAGAAGATGCTGATA 57.389 39.130 0.00 0.00 45.08 2.15
4803 5174 3.822167 TGATTCAATTGTTCAGCAGCAGA 59.178 39.130 5.13 0.00 0.00 4.26
4821 5192 2.026641 CTGTCCGATTTGCCCATGATT 58.973 47.619 0.00 0.00 0.00 2.57
4862 5239 1.096416 GCAGCACTACGTCTACTCCT 58.904 55.000 0.00 0.00 0.00 3.69
4873 5250 1.599047 GGAGGCAAGAGCAGCACTA 59.401 57.895 0.00 0.00 44.61 2.74
4960 5337 3.056328 GCCCACCTCCTTCGTTGC 61.056 66.667 0.00 0.00 0.00 4.17
4997 5374 6.397272 GCAATCCCATATTGTCAAAAACTGA 58.603 36.000 0.00 0.00 0.00 3.41
5047 5424 7.347252 GGAGGTTGGAAAAGGAATATTAGAGT 58.653 38.462 0.00 0.00 0.00 3.24
5052 5429 5.272402 CAGGGAGGTTGGAAAAGGAATATT 58.728 41.667 0.00 0.00 0.00 1.28
5080 5457 6.315714 TCCCCACAACCACTCAAAATTAATA 58.684 36.000 0.00 0.00 0.00 0.98
5093 5470 0.764890 CTCTGAACTCCCCACAACCA 59.235 55.000 0.00 0.00 0.00 3.67
5154 5532 4.011698 GGGGTTTTAAGGATGCTTAACGA 58.988 43.478 17.92 8.13 0.00 3.85
5155 5533 3.129813 GGGGGTTTTAAGGATGCTTAACG 59.870 47.826 17.92 0.00 0.00 3.18
5160 5538 2.111792 AGTTGGGGGTTTTAAGGATGCT 59.888 45.455 0.00 0.00 0.00 3.79
5219 5598 1.908340 GATGTGCAGAGGAGCAGGGT 61.908 60.000 0.00 0.00 46.69 4.34
5254 5633 5.748402 TGAACCTTGCAATATCATCTGTCT 58.252 37.500 0.00 0.00 0.00 3.41
5271 5650 4.746089 GCAGATATGAGCAGGAATGAACCT 60.746 45.833 0.00 0.00 41.43 3.50
5332 5711 3.484229 GCGATCGTCATCTTTGTTCCAAG 60.484 47.826 17.81 0.00 0.00 3.61
5335 5714 2.271800 AGCGATCGTCATCTTTGTTCC 58.728 47.619 17.81 0.00 0.00 3.62
5347 5726 0.599991 TTGCTGTGTGAAGCGATCGT 60.600 50.000 17.81 0.00 46.65 3.73
5351 5730 3.333414 GCTTGCTGTGTGAAGCGA 58.667 55.556 0.00 0.00 46.65 4.93
5398 5780 3.109619 CAAGATCTAAACTCGAGCGTCC 58.890 50.000 13.61 0.00 0.00 4.79
5485 5867 1.021390 CCGCATGACTTGACAGGACC 61.021 60.000 0.00 0.00 0.00 4.46
5548 6101 2.885113 CAGGACAGTCGCCGATCA 59.115 61.111 0.00 0.00 0.00 2.92
5553 6106 2.512515 GATGGCAGGACAGTCGCC 60.513 66.667 11.57 11.57 46.43 5.54
5575 6128 4.047125 GGCTGCCCTTGGGTAGCA 62.047 66.667 36.81 17.03 46.66 3.49
5621 6174 2.286425 AGGGCAGGGCAGTACCAT 60.286 61.111 0.00 0.00 42.05 3.55
5686 6239 0.613012 GGCAGGGCAGTTCCAGATTT 60.613 55.000 0.00 0.00 36.21 2.17
5694 6247 1.882352 CGACTTTAAGGCAGGGCAGTT 60.882 52.381 0.00 0.00 0.00 3.16
5749 6302 6.774170 TGCAGTACTCCCTCTAATCGTTATTA 59.226 38.462 0.00 0.00 0.00 0.98
5751 6304 5.138276 TGCAGTACTCCCTCTAATCGTTAT 58.862 41.667 0.00 0.00 0.00 1.89
5755 6308 4.038042 TGATTGCAGTACTCCCTCTAATCG 59.962 45.833 0.00 0.00 0.00 3.34
5759 6312 5.451937 CGAATTGATTGCAGTACTCCCTCTA 60.452 44.000 0.00 0.00 0.00 2.43
5762 6315 3.535561 CGAATTGATTGCAGTACTCCCT 58.464 45.455 0.00 0.00 0.00 4.20
5795 6348 1.993653 CAGTGATCTTGGGAGGCCA 59.006 57.895 5.01 0.00 0.00 5.36
5830 6383 8.049117 TCTTTAGCTCCTCATTGTCACAATAAT 58.951 33.333 1.72 0.00 0.00 1.28
5859 6412 4.698780 GGTTCCTCTTAACTTACGGCAATT 59.301 41.667 0.00 0.00 0.00 2.32
5861 6414 3.071312 TGGTTCCTCTTAACTTACGGCAA 59.929 43.478 0.00 0.00 0.00 4.52
5867 6420 6.273730 TCTTTGGGATGGTTCCTCTTAACTTA 59.726 38.462 0.00 0.00 42.20 2.24
5904 6457 2.154462 CAGCTGTTACCTTTGGTCAGG 58.846 52.381 5.25 0.00 37.09 3.86
5923 6476 4.402793 GTGAGTAGGAAGTAGGAATGAGCA 59.597 45.833 0.00 0.00 0.00 4.26
5924 6477 4.647399 AGTGAGTAGGAAGTAGGAATGAGC 59.353 45.833 0.00 0.00 0.00 4.26
5964 6521 1.808133 CGGATGCTTCAGAGGTTAGGC 60.808 57.143 1.64 0.00 0.00 3.93
6038 6595 5.362717 CAGGTGTGTATGGGAGTGAGTTATA 59.637 44.000 0.00 0.00 0.00 0.98
6044 6601 2.024176 ACAGGTGTGTATGGGAGTGA 57.976 50.000 0.00 0.00 34.05 3.41
6065 6936 5.964758 TGGGCATGCTATAGTTTTTGAAAG 58.035 37.500 18.92 0.00 0.00 2.62
6068 6939 4.854173 TCTGGGCATGCTATAGTTTTTGA 58.146 39.130 18.92 0.00 0.00 2.69
6071 6942 5.052693 TGATCTGGGCATGCTATAGTTTT 57.947 39.130 18.92 3.89 0.00 2.43
6104 6975 3.021695 GGTAACAAGGGAAAGCATACCC 58.978 50.000 0.00 0.00 45.88 3.69
6162 7036 2.267006 CACAGAGCCCTGCACGAT 59.733 61.111 0.00 0.00 44.16 3.73
6177 7053 8.950208 AGAATATCTACAAGGCTAAAAGACAC 57.050 34.615 0.00 0.00 0.00 3.67
6197 7090 7.337689 GCCAGATGTGCATGGATAAATAGAATA 59.662 37.037 8.28 0.00 39.02 1.75
6205 7300 1.596603 CGCCAGATGTGCATGGATAA 58.403 50.000 8.28 0.00 39.02 1.75
6206 7301 3.310727 CGCCAGATGTGCATGGATA 57.689 52.632 8.28 0.00 39.02 2.59
6273 7370 5.168569 CAGCAGGAGAAGACGTACATTTAA 58.831 41.667 0.00 0.00 0.00 1.52
6283 7380 4.180057 CTGAACATACAGCAGGAGAAGAC 58.820 47.826 0.00 0.00 0.00 3.01
6287 7384 3.578282 TGAACTGAACATACAGCAGGAGA 59.422 43.478 0.00 0.00 41.06 3.71
6334 7432 6.932356 ACAGATAATGCTTGAGTGGTTATG 57.068 37.500 0.00 0.00 0.00 1.90
6344 7442 7.648908 TGAACTGAACAAAACAGATAATGCTTG 59.351 33.333 0.00 0.00 38.55 4.01
6352 7450 4.196193 TCGGTGAACTGAACAAAACAGAT 58.804 39.130 0.00 0.00 38.55 2.90
6398 9249 5.414765 CAGGGTACATTAAAACAAGAGGTCC 59.585 44.000 0.00 0.00 0.00 4.46
6399 9250 5.106277 GCAGGGTACATTAAAACAAGAGGTC 60.106 44.000 0.00 0.00 0.00 3.85
6400 9251 4.765339 GCAGGGTACATTAAAACAAGAGGT 59.235 41.667 0.00 0.00 0.00 3.85
6425 9278 8.092521 AGAACATACAAGTTGAAGAACTGATG 57.907 34.615 10.54 0.00 41.87 3.07
6426 9279 8.682936 AAGAACATACAAGTTGAAGAACTGAT 57.317 30.769 10.54 0.00 41.87 2.90
6427 9280 7.987458 AGAAGAACATACAAGTTGAAGAACTGA 59.013 33.333 10.54 0.00 41.87 3.41
6437 9290 6.613153 AGAGGCTAGAAGAACATACAAGTT 57.387 37.500 0.00 0.00 0.00 2.66
6472 9325 1.608590 CATTGGCAACTTGGAGACGTT 59.391 47.619 0.00 0.00 37.61 3.99
6474 9327 0.523072 CCATTGGCAACTTGGAGACG 59.477 55.000 13.48 0.00 41.43 4.18
6477 9338 1.067354 GCTTCCATTGGCAACTTGGAG 60.067 52.381 18.99 14.89 45.92 3.86
6500 9361 5.076182 TGGAAGATGCAAATTGTTACCTGA 58.924 37.500 0.00 0.00 0.00 3.86
6507 9368 4.091549 ACAGGATGGAAGATGCAAATTGT 58.908 39.130 0.00 0.00 43.62 2.71
6554 9611 3.181458 ACAACGGGTGTATGGGATGATAC 60.181 47.826 0.00 0.00 39.29 2.24
6653 9876 8.305317 TGCATGATAGATTGAAACAAACATTGA 58.695 29.630 0.00 0.00 0.00 2.57
6707 9930 1.065401 CTGTGTGTGGTTGTGCGAATT 59.935 47.619 0.00 0.00 0.00 2.17
6713 9936 2.355197 TGAGAACTGTGTGTGGTTGTG 58.645 47.619 0.00 0.00 0.00 3.33
6714 9937 2.779755 TGAGAACTGTGTGTGGTTGT 57.220 45.000 0.00 0.00 0.00 3.32
6749 9972 0.674534 GTATACAGGAGGAGGGTGCG 59.325 60.000 0.00 0.00 0.00 5.34
6753 9976 3.576118 CAGTCATGTATACAGGAGGAGGG 59.424 52.174 19.89 5.22 37.34 4.30
6786 10010 6.985059 ACTTAGGAAAAGACACACTACAAGTC 59.015 38.462 0.00 0.00 0.00 3.01
6789 10013 6.053005 CCACTTAGGAAAAGACACACTACAA 58.947 40.000 0.00 0.00 41.22 2.41
6802 10026 2.441750 ACCAGTCTTGCCACTTAGGAAA 59.558 45.455 0.00 0.00 41.22 3.13
6820 10044 2.305928 CCCACAAATTGAGTCACACCA 58.694 47.619 0.00 0.00 0.00 4.17
6826 10050 6.575162 ACATCTTTACCCACAAATTGAGTC 57.425 37.500 0.00 0.00 0.00 3.36
6895 10132 4.893424 ACGAAATCGGTTTTATCCCATG 57.107 40.909 7.81 0.00 44.95 3.66
6908 10145 7.695869 AGGCTTAGAATAACTAACGAAATCG 57.304 36.000 0.48 0.48 46.33 3.34
6910 10147 7.656542 GGCTAGGCTTAGAATAACTAACGAAAT 59.343 37.037 9.46 0.00 36.33 2.17
6937 10175 6.262496 GGCCTTCTGTAAAGTGACTTAAAAGT 59.738 38.462 0.00 0.00 43.16 2.66
6973 10247 2.221055 CACTATCCATAGGTTTTCGCGC 59.779 50.000 0.00 0.00 34.69 6.86
6990 10264 1.270094 CCTCGGCGAATTATGGCACTA 60.270 52.381 12.13 0.00 30.88 2.74
6993 10267 1.891919 GCCTCGGCGAATTATGGCA 60.892 57.895 26.20 0.00 40.04 4.92
7055 10329 6.437162 AGGCACACAACTAATTAACAATGGAT 59.563 34.615 0.00 0.00 0.00 3.41
7080 10354 2.636647 TGATTGGTTGCAGAGTCACA 57.363 45.000 0.00 0.00 0.00 3.58
7083 10357 4.639310 AGAATCATGATTGGTTGCAGAGTC 59.361 41.667 25.37 6.59 0.00 3.36
7127 10401 2.193306 AATAGCGCGGAAATTGCAAG 57.807 45.000 8.83 0.00 0.00 4.01
7154 10428 4.281182 ACTTCTCTGAAACGTGTACCTGAT 59.719 41.667 0.00 0.00 0.00 2.90
7164 10438 5.845985 TGCTCATTAACTTCTCTGAAACG 57.154 39.130 0.00 0.00 0.00 3.60
7189 10466 8.189119 AGAGCTCATACCTTCTTAGGAATTAG 57.811 38.462 17.77 0.00 45.05 1.73
7220 10497 6.826741 TGAATTAACACTATGCCTAAGGGAAC 59.173 38.462 0.00 0.00 33.58 3.62
7257 10535 6.955963 CACATCAAGACGACTTTAGCATAAAC 59.044 38.462 0.00 0.00 33.70 2.01
7264 10543 5.060662 TCTCCACATCAAGACGACTTTAG 57.939 43.478 0.00 0.00 33.70 1.85
7272 10551 4.832248 TGGTGTAATCTCCACATCAAGAC 58.168 43.478 0.00 0.00 34.16 3.01
7305 10587 7.810260 AGATTCCTGGCTTTACTCATCTTAAT 58.190 34.615 0.00 0.00 0.00 1.40
7307 10589 6.814954 AGATTCCTGGCTTTACTCATCTTA 57.185 37.500 0.00 0.00 0.00 2.10
7309 10591 6.814954 TTAGATTCCTGGCTTTACTCATCT 57.185 37.500 0.00 0.00 0.00 2.90
7310 10592 6.429385 CCATTAGATTCCTGGCTTTACTCATC 59.571 42.308 0.00 0.00 0.00 2.92
7311 10593 6.302269 CCATTAGATTCCTGGCTTTACTCAT 58.698 40.000 0.00 0.00 0.00 2.90
7312 10594 5.397899 CCCATTAGATTCCTGGCTTTACTCA 60.398 44.000 0.00 0.00 0.00 3.41
7313 10595 5.066593 CCCATTAGATTCCTGGCTTTACTC 58.933 45.833 0.00 0.00 0.00 2.59
7322 10604 5.749462 AGAACTCAACCCATTAGATTCCTG 58.251 41.667 0.00 0.00 0.00 3.86
7362 10644 9.730705 CATTTTAATATGGAGGCTCTGAATAGA 57.269 33.333 15.23 1.23 0.00 1.98
7363 10645 9.730705 TCATTTTAATATGGAGGCTCTGAATAG 57.269 33.333 15.23 0.00 0.00 1.73
7387 10669 8.535690 AAGTTTTACCATTTTCGTTTTGTTCA 57.464 26.923 0.00 0.00 0.00 3.18
7429 10714 9.592720 AACAACACTTTTCTTTTTCATTTTTCG 57.407 25.926 0.00 0.00 0.00 3.46
7456 10741 0.107654 GTGCTGCCCTATCGGAAAGT 60.108 55.000 0.00 0.00 0.00 2.66
7464 10749 2.761786 AATGGAATGTGCTGCCCTAT 57.238 45.000 0.00 0.00 0.00 2.57
7466 10751 1.188863 GAAATGGAATGTGCTGCCCT 58.811 50.000 0.00 0.00 0.00 5.19
7474 10759 4.322057 AACTAGCTGGGAAATGGAATGT 57.678 40.909 0.85 0.00 0.00 2.71
7495 10780 2.571653 AGTGAAGTGCTTATGGCTGGTA 59.428 45.455 0.00 0.00 42.39 3.25
7513 10798 9.003658 AGAAAATCCAACTGTTAGACATTAGTG 57.996 33.333 0.00 0.00 0.00 2.74
7715 11100 0.178068 AAGCAGTGTGTCGGAGTTGT 59.822 50.000 0.00 0.00 0.00 3.32
7722 11107 1.654105 GATACGGAAAGCAGTGTGTCG 59.346 52.381 0.00 0.00 0.00 4.35
7741 11127 0.976641 AACTTCTGCATCGACCCAGA 59.023 50.000 11.60 11.60 36.38 3.86
7774 11166 2.166664 AGGGAGTAGCAAGTAAGCTTCG 59.833 50.000 0.00 0.00 43.70 3.79
7832 11235 4.219070 TGAAATCTGCCAATTTCAGGTCAG 59.781 41.667 15.72 0.00 45.85 3.51
7848 11251 4.292186 TGCTAGGAACTGCTTGAAATCT 57.708 40.909 0.00 0.00 41.52 2.40
7942 11365 5.229423 CCAAATATATTGGTTTGATGCCCG 58.771 41.667 0.00 0.00 37.48 6.13
7962 11385 4.323569 TGGTTTCAGGGCATATAACCAA 57.676 40.909 12.92 0.77 43.70 3.67
7972 11395 5.639082 CACTAAATTTCAATGGTTTCAGGGC 59.361 40.000 0.00 0.00 0.00 5.19
8008 11431 2.383855 CCACCAAACTCAACCTGGAAA 58.616 47.619 0.00 0.00 34.16 3.13
8025 11448 1.814527 CACCGTAGAGTAGCCCCAC 59.185 63.158 0.00 0.00 0.00 4.61
8031 11454 1.985447 TTCGCCGCACCGTAGAGTAG 61.985 60.000 0.00 0.00 0.00 2.57
8033 11456 1.378882 TATTCGCCGCACCGTAGAGT 61.379 55.000 0.00 0.00 0.00 3.24
8050 11473 4.142403 CCAATCTTGCACACCGTGAAATAT 60.142 41.667 5.28 0.00 35.23 1.28
8054 11477 0.950836 CCAATCTTGCACACCGTGAA 59.049 50.000 5.28 0.00 35.23 3.18
8079 11502 7.377696 TCCAGTAGTAAGTTACCTTTTGGAA 57.622 36.000 17.17 7.20 44.07 3.53
8108 11533 5.356190 AGACTGATCACTGCAAAATGTATGG 59.644 40.000 0.00 0.00 0.00 2.74
8121 11546 8.147058 GGTTATCATGATTGTAGACTGATCACT 58.853 37.037 14.65 0.00 33.08 3.41
8123 11548 7.445121 GGGTTATCATGATTGTAGACTGATCA 58.555 38.462 14.65 0.00 34.61 2.92
8124 11549 6.587990 CGGGTTATCATGATTGTAGACTGATC 59.412 42.308 14.65 0.00 0.00 2.92
8127 11552 4.449068 GCGGGTTATCATGATTGTAGACTG 59.551 45.833 14.65 5.43 0.00 3.51
8128 11553 4.503296 GGCGGGTTATCATGATTGTAGACT 60.503 45.833 14.65 0.00 0.00 3.24
8130 11555 3.646162 AGGCGGGTTATCATGATTGTAGA 59.354 43.478 14.65 0.00 0.00 2.59
8132 11557 4.431416 AAGGCGGGTTATCATGATTGTA 57.569 40.909 14.65 0.00 0.00 2.41
8146 11642 1.535462 CGGCATAAATAGAAAGGCGGG 59.465 52.381 0.00 0.00 43.33 6.13
8151 11647 2.543848 TGAGCGCGGCATAAATAGAAAG 59.456 45.455 8.83 0.00 0.00 2.62
8156 11652 1.068588 AGACTGAGCGCGGCATAAATA 59.931 47.619 8.83 0.00 0.00 1.40
8174 11670 9.938280 GGCACACCAACTAATATTATACATAGA 57.062 33.333 0.00 0.00 35.26 1.98
8176 11672 9.719355 CAGGCACACCAACTAATATTATACATA 57.281 33.333 0.00 0.00 39.06 2.29
8186 11682 2.158682 TGTCACAGGCACACCAACTAAT 60.159 45.455 0.00 0.00 39.06 1.73
8188 11684 0.833949 TGTCACAGGCACACCAACTA 59.166 50.000 0.00 0.00 39.06 2.24
8208 11704 0.108992 CTGCAATGCACCATCACACC 60.109 55.000 2.72 0.00 33.79 4.16
8230 11726 0.101399 TCTTCTGAGAATCCGCGCTC 59.899 55.000 5.56 1.93 0.00 5.03
8234 11730 3.525537 TCACAATCTTCTGAGAATCCGC 58.474 45.455 0.00 0.00 35.07 5.54
8235 11731 4.443725 CGATCACAATCTTCTGAGAATCCG 59.556 45.833 0.00 0.00 35.07 4.18
8237 11733 5.691305 CCTCGATCACAATCTTCTGAGAATC 59.309 44.000 0.00 0.00 35.07 2.52
8238 11734 5.453057 CCCTCGATCACAATCTTCTGAGAAT 60.453 44.000 0.00 0.00 35.07 2.40
8246 11742 0.181350 GGGCCCTCGATCACAATCTT 59.819 55.000 17.04 0.00 0.00 2.40
8272 11768 9.627123 ATTAAATTAATCGGAATCTTGTCCTCA 57.373 29.630 0.00 0.00 35.31 3.86
8337 21797 4.213059 CACATGTGTACATTACAGTGTGCA 59.787 41.667 18.03 0.00 43.35 4.57
8341 21801 4.631377 CCCTCACATGTGTACATTACAGTG 59.369 45.833 24.63 4.83 39.77 3.66
8353 21813 3.616956 ATGAGTACACCCTCACATGTG 57.383 47.619 20.18 20.18 43.86 3.21
8377 21840 9.979270 GTACTTTATGTTCATAGATATGCATGC 57.021 33.333 11.82 11.82 33.76 4.06
8433 21896 4.684134 AATGTTGCCGCTGCCCCT 62.684 61.111 0.00 0.00 36.33 4.79
8434 21897 3.694538 AAATGTTGCCGCTGCCCC 61.695 61.111 0.00 0.00 36.33 5.80
8446 21909 1.941377 ACCATGGGTGATGCAAATGT 58.059 45.000 18.09 0.00 32.98 2.71
8465 21932 1.202964 TCGACTACTTCCTGGACCACA 60.203 52.381 0.00 0.00 0.00 4.17
8472 21939 2.414293 CCACGACTTCGACTACTTCCTG 60.414 54.545 5.47 0.00 43.02 3.86
8499 21972 3.238241 CGCGACTGCTCGGTTACG 61.238 66.667 0.00 0.00 40.53 3.18
8523 21996 1.470979 GCGATAAGGTTTCGGAGAGCA 60.471 52.381 0.45 0.00 38.43 4.26
8528 22001 0.906775 AAGGGCGATAAGGTTTCGGA 59.093 50.000 0.00 0.00 37.10 4.55
8530 22003 1.664151 GTGAAGGGCGATAAGGTTTCG 59.336 52.381 0.00 0.00 39.55 3.46
8567 22041 2.604174 GGAACGTCGTTGTGCCCTG 61.604 63.158 16.75 0.00 30.48 4.45
8578 22052 0.952497 GGAGGTTTTCGGGGAACGTC 60.952 60.000 0.00 9.24 44.69 4.34
8582 22056 1.069535 AAGGGGAGGTTTTCGGGGAA 61.070 55.000 0.00 0.00 0.00 3.97
8587 22061 0.608308 GGGTGAAGGGGAGGTTTTCG 60.608 60.000 0.00 0.00 0.00 3.46
8596 24538 4.722700 CTGCACCGGGTGAAGGGG 62.723 72.222 30.65 4.82 35.66 4.79
8645 28483 0.607489 TTTCTCTTGCTGCTGCTCCC 60.607 55.000 17.00 0.00 40.48 4.30
8662 28500 5.111293 CCGACCAACTATATACCGTTGTTT 58.889 41.667 11.73 1.99 38.99 2.83
8666 28504 2.629617 CCCCGACCAACTATATACCGTT 59.370 50.000 0.00 0.00 0.00 4.44
8667 28505 2.242043 CCCCGACCAACTATATACCGT 58.758 52.381 0.00 0.00 0.00 4.83
8679 28517 1.263356 CACTTCTTCTACCCCGACCA 58.737 55.000 0.00 0.00 0.00 4.02
8750 28592 2.529780 AGCTGAGCTCAGACATATGC 57.470 50.000 41.20 26.81 46.59 3.14
8781 28623 0.845768 CTTTGCGCCTCGTGTTTTTG 59.154 50.000 4.18 0.00 0.00 2.44
8782 28624 0.869880 GCTTTGCGCCTCGTGTTTTT 60.870 50.000 4.18 0.00 0.00 1.94
8783 28625 1.299089 GCTTTGCGCCTCGTGTTTT 60.299 52.632 4.18 0.00 0.00 2.43
8820 28662 3.027412 GCAGGAGAAGAGGAGTGATACA 58.973 50.000 0.00 0.00 0.00 2.29
8828 28670 4.417183 TCCTATTAGAGCAGGAGAAGAGGA 59.583 45.833 0.00 0.00 37.05 3.71
8838 28680 4.155709 TCCTCCACATCCTATTAGAGCAG 58.844 47.826 0.00 0.00 0.00 4.24
8863 28705 6.472887 CGGGTGTGGACAATATATAAGGAAT 58.527 40.000 0.00 0.00 0.00 3.01
8874 28716 0.837272 CTATCCCGGGTGTGGACAAT 59.163 55.000 22.86 6.31 33.94 2.71
8906 28761 5.295292 CCACTAGTGATTTCATGACATGGTC 59.705 44.000 24.68 11.32 0.00 4.02
8921 28779 1.000506 GTCTGAAACGCCCACTAGTGA 59.999 52.381 24.68 0.26 0.00 3.41
8927 28785 0.591659 GGAAAGTCTGAAACGCCCAC 59.408 55.000 0.00 0.00 0.00 4.61
9028 28982 9.294030 GCTCTACAAACCAATTCTGAAAATATG 57.706 33.333 0.00 0.00 0.00 1.78
9129 29087 7.634522 TGTTTTTATTTTGCGAAAAGATTGGG 58.365 30.769 2.54 0.00 33.22 4.12
9130 29088 9.495754 TTTGTTTTTATTTTGCGAAAAGATTGG 57.504 25.926 2.54 0.00 33.22 3.16
9282 29256 9.154632 TGGCAATCCTCTGTACTTCTATATTTA 57.845 33.333 0.00 0.00 0.00 1.40
9285 29259 7.805083 ATGGCAATCCTCTGTACTTCTATAT 57.195 36.000 0.00 0.00 0.00 0.86
9286 29260 7.728532 TGTATGGCAATCCTCTGTACTTCTATA 59.271 37.037 0.00 0.00 0.00 1.31
9288 29262 5.897250 TGTATGGCAATCCTCTGTACTTCTA 59.103 40.000 0.00 0.00 0.00 2.10
9289 29263 4.716784 TGTATGGCAATCCTCTGTACTTCT 59.283 41.667 0.00 0.00 0.00 2.85
9290 29264 5.023533 TGTATGGCAATCCTCTGTACTTC 57.976 43.478 0.00 0.00 0.00 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.