Multiple sequence alignment - TraesCS4A01G307000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G307000 chr4A 100.000 2633 0 0 1 2633 601195761 601193129 0.000000e+00 4863.0
1 TraesCS4A01G307000 chr4A 80.507 1144 159 40 834 1951 601181400 601180295 0.000000e+00 819.0
2 TraesCS4A01G307000 chr4A 97.378 267 7 0 2367 2633 594416744 594416478 3.090000e-124 455.0
3 TraesCS4A01G307000 chr4A 97.378 267 7 0 2367 2633 594421877 594421611 3.090000e-124 455.0
4 TraesCS4A01G307000 chr4A 97.378 267 7 0 2367 2633 601187929 601187663 3.090000e-124 455.0
5 TraesCS4A01G307000 chr4A 97.378 267 7 0 2367 2633 632036549 632036815 3.090000e-124 455.0
6 TraesCS4A01G307000 chr4A 77.928 666 109 21 1000 1631 601178222 601178883 5.320000e-102 381.0
7 TraesCS4A01G307000 chr4A 95.775 213 9 0 1954 2166 5932050 5931838 6.980000e-91 344.0
8 TraesCS4A01G307000 chr4A 76.462 650 128 15 1000 1629 601156436 601157080 1.950000e-86 329.0
9 TraesCS4A01G307000 chrUn 93.176 1524 75 8 435 1951 60956979 60955478 0.000000e+00 2211.0
10 TraesCS4A01G307000 chrUn 81.590 1195 160 39 778 1953 60947930 60946777 0.000000e+00 933.0
11 TraesCS4A01G307000 chrUn 97.378 267 7 0 2367 2633 81556956 81556690 3.090000e-124 455.0
12 TraesCS4A01G307000 chrUn 78.746 654 111 19 1001 1631 60943373 60944021 1.890000e-111 412.0
13 TraesCS4A01G307000 chrUn 76.693 635 129 14 1000 1617 60928706 60929338 4.200000e-88 335.0
14 TraesCS4A01G307000 chrUn 83.102 361 31 6 6 366 60957577 60957247 4.260000e-78 302.0
15 TraesCS4A01G307000 chrUn 96.711 152 4 1 2223 2373 29743879 29743728 4.350000e-63 252.0
16 TraesCS4A01G307000 chr4B 91.457 1112 63 13 856 1951 5534518 5533423 0.000000e+00 1498.0
17 TraesCS4A01G307000 chr4B 83.140 172 15 7 267 425 5535153 5534983 7.600000e-31 145.0
18 TraesCS4A01G307000 chr4B 80.526 190 19 5 485 658 5534963 5534776 2.130000e-26 130.0
19 TraesCS4A01G307000 chr4B 71.512 516 117 23 1073 1573 5521855 5521355 7.700000e-21 111.0
20 TraesCS4A01G307000 chr4B 85.714 77 11 0 650 726 5534734 5534658 6.040000e-12 82.4
21 TraesCS4A01G307000 chr7B 94.774 421 21 1 1954 2373 537831930 537832350 0.000000e+00 654.0
22 TraesCS4A01G307000 chr7B 93.333 165 9 2 2210 2373 537229989 537230152 2.620000e-60 243.0
23 TraesCS4A01G307000 chr7B 100.000 31 0 0 166 196 18504052 18504022 1.020000e-04 58.4
24 TraesCS4A01G307000 chr7B 94.118 34 2 0 161 194 528866012 528865979 5.000000e-03 52.8
25 TraesCS4A01G307000 chr5B 82.931 662 82 20 997 1629 496549735 496550394 3.800000e-158 568.0
26 TraesCS4A01G307000 chr5B 81.886 668 84 22 997 1629 496806032 496806697 1.790000e-146 529.0
27 TraesCS4A01G307000 chr5B 87.069 116 13 2 249 364 208523297 208523410 2.130000e-26 130.0
28 TraesCS4A01G307000 chr5D 82.879 660 83 17 997 1629 412448817 412449473 1.370000e-157 566.0
29 TraesCS4A01G307000 chr6B 90.499 421 39 1 1954 2373 477697401 477696981 2.960000e-154 555.0
30 TraesCS4A01G307000 chr6B 97.143 35 1 0 166 200 525115542 525115576 2.830000e-05 60.2
31 TraesCS4A01G307000 chr1A 97.753 267 6 0 2367 2633 578242697 578242963 6.640000e-126 460.0
32 TraesCS4A01G307000 chr1A 87.826 115 14 0 251 365 419032265 419032379 4.570000e-28 135.0
33 TraesCS4A01G307000 chr1A 92.683 41 2 1 161 200 544368508 544368548 1.020000e-04 58.4
34 TraesCS4A01G307000 chr7A 97.037 270 8 0 2364 2633 634900718 634900987 3.090000e-124 455.0
35 TraesCS4A01G307000 chr7A 97.143 35 1 0 166 200 660488805 660488839 2.830000e-05 60.2
36 TraesCS4A01G307000 chr6A 97.378 267 7 0 2367 2633 97975638 97975904 3.090000e-124 455.0
37 TraesCS4A01G307000 chr5A 97.378 267 7 0 2367 2633 88572814 88572548 3.090000e-124 455.0
38 TraesCS4A01G307000 chr7D 93.651 252 16 0 1954 2205 563841877 563842128 6.880000e-101 377.0
39 TraesCS4A01G307000 chr7D 94.203 207 12 0 1954 2160 80292236 80292442 1.520000e-82 316.0
40 TraesCS4A01G307000 chr7D 93.750 160 9 1 2215 2373 80292848 80293007 3.390000e-59 239.0
41 TraesCS4A01G307000 chr4D 92.135 267 21 0 1954 2220 328701275 328701541 6.880000e-101 377.0
42 TraesCS4A01G307000 chr4D 85.714 126 17 1 239 364 428978931 428978807 5.910000e-27 132.0
43 TraesCS4A01G307000 chr1D 90.511 274 25 1 1954 2227 43187730 43188002 6.930000e-96 361.0
44 TraesCS4A01G307000 chr1D 94.118 153 7 2 2223 2373 479616795 479616643 5.670000e-57 231.0
45 TraesCS4A01G307000 chr1D 88.125 160 7 1 1980 2139 479617512 479617365 2.080000e-41 180.0
46 TraesCS4A01G307000 chr1D 90.654 107 9 1 258 364 7349850 7349745 9.830000e-30 141.0
47 TraesCS4A01G307000 chr1D 84.127 126 19 1 251 376 325485969 325485845 1.280000e-23 121.0
48 TraesCS4A01G307000 chr1D 96.875 32 1 0 169 200 476750965 476750934 1.000000e-03 54.7
49 TraesCS4A01G307000 chr3B 95.050 202 10 0 1954 2155 602785033 602784832 4.230000e-83 318.0
50 TraesCS4A01G307000 chr3B 94.330 194 10 1 2181 2373 85079334 85079527 1.980000e-76 296.0
51 TraesCS4A01G307000 chr3B 96.835 158 4 1 2217 2373 602784445 602784288 2.010000e-66 263.0
52 TraesCS4A01G307000 chr6D 89.552 201 14 5 2180 2373 1557349 1557149 5.630000e-62 248.0
53 TraesCS4A01G307000 chr2D 90.826 109 9 1 257 364 122864260 122864152 7.600000e-31 145.0
54 TraesCS4A01G307000 chr2B 90.476 105 9 1 257 360 175630308 175630204 1.270000e-28 137.0
55 TraesCS4A01G307000 chr3D 89.720 107 10 1 258 364 516202475 516202370 4.570000e-28 135.0
56 TraesCS4A01G307000 chr3A 97.727 44 1 0 157 200 702538860 702538903 2.810000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G307000 chr4A 601193129 601195761 2632 True 4863.00 4863 100.00000 1 2633 1 chr4A.!!$R6 2632
1 TraesCS4A01G307000 chr4A 601180295 601181400 1105 True 819.00 819 80.50700 834 1951 1 chr4A.!!$R4 1117
2 TraesCS4A01G307000 chr4A 601178222 601178883 661 False 381.00 381 77.92800 1000 1631 1 chr4A.!!$F2 631
3 TraesCS4A01G307000 chr4A 601156436 601157080 644 False 329.00 329 76.46200 1000 1629 1 chr4A.!!$F1 629
4 TraesCS4A01G307000 chrUn 60955478 60957577 2099 True 1256.50 2211 88.13900 6 1951 2 chrUn.!!$R4 1945
5 TraesCS4A01G307000 chrUn 60946777 60947930 1153 True 933.00 933 81.59000 778 1953 1 chrUn.!!$R2 1175
6 TraesCS4A01G307000 chrUn 60943373 60944021 648 False 412.00 412 78.74600 1001 1631 1 chrUn.!!$F2 630
7 TraesCS4A01G307000 chrUn 60928706 60929338 632 False 335.00 335 76.69300 1000 1617 1 chrUn.!!$F1 617
8 TraesCS4A01G307000 chr4B 5533423 5535153 1730 True 463.85 1498 85.20925 267 1951 4 chr4B.!!$R2 1684
9 TraesCS4A01G307000 chr5B 496549735 496550394 659 False 568.00 568 82.93100 997 1629 1 chr5B.!!$F2 632
10 TraesCS4A01G307000 chr5B 496806032 496806697 665 False 529.00 529 81.88600 997 1629 1 chr5B.!!$F3 632
11 TraesCS4A01G307000 chr5D 412448817 412449473 656 False 566.00 566 82.87900 997 1629 1 chr5D.!!$F1 632
12 TraesCS4A01G307000 chr7D 80292236 80293007 771 False 277.50 316 93.97650 1954 2373 2 chr7D.!!$F2 419
13 TraesCS4A01G307000 chr1D 479616643 479617512 869 True 205.50 231 91.12150 1980 2373 2 chr1D.!!$R4 393
14 TraesCS4A01G307000 chr3B 602784288 602785033 745 True 290.50 318 95.94250 1954 2373 2 chr3B.!!$R1 419

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
782 1109 0.182537 TTACTTGTGGTGTGCTGGCT 59.817 50.0 0.0 0.0 0.0 4.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2592 3903 0.031314 CTCATCCTCGACGACATGGG 59.969 60.0 10.68 5.23 0.0 4.0 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 6.767456 TGCAACATAATTTTTGGGATGTTCT 58.233 32.000 0.10 0.00 39.81 3.01
43 44 6.910536 TGTTCTGTTTTCTCTTCTCAACTC 57.089 37.500 0.00 0.00 0.00 3.01
44 45 5.520288 TGTTCTGTTTTCTCTTCTCAACTCG 59.480 40.000 0.00 0.00 0.00 4.18
64 65 7.154435 ACTCGAAATACAGAAAGCTACACTA 57.846 36.000 0.00 0.00 0.00 2.74
70 71 8.494016 AAATACAGAAAGCTACACTATGAACC 57.506 34.615 0.00 0.00 0.00 3.62
111 112 2.092323 CTGCTAAAGCTTGTTACCCCC 58.908 52.381 0.00 0.00 42.66 5.40
112 113 1.708551 TGCTAAAGCTTGTTACCCCCT 59.291 47.619 0.00 0.00 42.66 4.79
113 114 2.109304 TGCTAAAGCTTGTTACCCCCTT 59.891 45.455 0.00 0.00 42.66 3.95
114 115 3.162666 GCTAAAGCTTGTTACCCCCTTT 58.837 45.455 0.00 0.00 38.21 3.11
115 116 3.056821 GCTAAAGCTTGTTACCCCCTTTG 60.057 47.826 0.00 0.00 38.21 2.77
116 117 3.322191 AAAGCTTGTTACCCCCTTTGA 57.678 42.857 0.00 0.00 0.00 2.69
117 118 3.542969 AAGCTTGTTACCCCCTTTGAT 57.457 42.857 0.00 0.00 0.00 2.57
118 119 4.668138 AAGCTTGTTACCCCCTTTGATA 57.332 40.909 0.00 0.00 0.00 2.15
119 120 4.881157 AGCTTGTTACCCCCTTTGATAT 57.119 40.909 0.00 0.00 0.00 1.63
120 121 5.987019 AGCTTGTTACCCCCTTTGATATA 57.013 39.130 0.00 0.00 0.00 0.86
121 122 6.335781 AGCTTGTTACCCCCTTTGATATAA 57.664 37.500 0.00 0.00 0.00 0.98
122 123 6.922540 AGCTTGTTACCCCCTTTGATATAAT 58.077 36.000 0.00 0.00 0.00 1.28
123 124 6.777580 AGCTTGTTACCCCCTTTGATATAATG 59.222 38.462 0.00 0.00 0.00 1.90
124 125 6.775629 GCTTGTTACCCCCTTTGATATAATGA 59.224 38.462 0.00 0.00 0.00 2.57
125 126 7.255486 GCTTGTTACCCCCTTTGATATAATGAC 60.255 40.741 0.00 0.00 0.00 3.06
126 127 6.292923 TGTTACCCCCTTTGATATAATGACG 58.707 40.000 0.00 0.00 0.00 4.35
127 128 6.126710 TGTTACCCCCTTTGATATAATGACGT 60.127 38.462 0.00 0.00 0.00 4.34
128 129 5.382664 ACCCCCTTTGATATAATGACGTT 57.617 39.130 0.00 0.00 0.00 3.99
133 134 6.096282 CCCCTTTGATATAATGACGTTTTGGT 59.904 38.462 0.00 0.00 0.00 3.67
144 145 5.085636 TGACGTTTTGGTAGATTTGAACG 57.914 39.130 5.07 5.07 43.68 3.95
152 153 2.158943 GGTAGATTTGAACGGAGGGAGG 60.159 54.545 0.00 0.00 0.00 4.30
179 180 8.865590 ACAATACAAAGTTGTACCAAATCAAC 57.134 30.769 6.05 0.00 45.47 3.18
193 194 9.445786 GTACCAAATCAACGACAATTAATATGG 57.554 33.333 0.00 0.00 0.00 2.74
196 197 9.748708 CCAAATCAACGACAATTAATATGGATT 57.251 29.630 0.00 0.00 0.00 3.01
204 205 9.436957 ACGACAATTAATATGGATTGGACTATC 57.563 33.333 13.06 3.96 37.53 2.08
335 338 7.816640 AGACGCATTTTAGTGTGTTTATTCAT 58.183 30.769 0.00 0.00 42.45 2.57
360 535 5.934043 TCATTTCAGTCTGTATGTTGTCCAG 59.066 40.000 13.61 0.00 0.00 3.86
386 561 5.818136 AACATCTCATAATTGTGAACGGG 57.182 39.130 6.35 0.00 0.00 5.28
387 562 3.627577 ACATCTCATAATTGTGAACGGGC 59.372 43.478 6.35 0.00 0.00 6.13
425 600 2.355010 AATGCCAGAGCCTTATGTCC 57.645 50.000 0.00 0.00 38.69 4.02
440 615 2.189594 TGTCCCAGCTCAAATGACTG 57.810 50.000 0.00 6.21 0.00 3.51
524 758 6.070653 CCAATGAATTCTTGATTTTGGGAGGA 60.071 38.462 7.05 0.00 34.24 3.71
526 760 6.780457 TGAATTCTTGATTTTGGGAGGATC 57.220 37.500 7.05 0.00 0.00 3.36
548 782 4.693566 TCGAATTACCATGTTTGTGAGTCC 59.306 41.667 0.00 0.00 0.00 3.85
562 800 8.590204 TGTTTGTGAGTCCTTGAAGTATACATA 58.410 33.333 5.50 0.00 0.00 2.29
563 801 9.601217 GTTTGTGAGTCCTTGAAGTATACATAT 57.399 33.333 5.50 0.00 0.00 1.78
564 802 9.599866 TTTGTGAGTCCTTGAAGTATACATATG 57.400 33.333 5.50 0.00 0.00 1.78
565 803 7.210174 TGTGAGTCCTTGAAGTATACATATGC 58.790 38.462 5.50 0.00 0.00 3.14
566 804 6.647067 GTGAGTCCTTGAAGTATACATATGCC 59.353 42.308 5.50 0.00 0.00 4.40
567 805 6.554982 TGAGTCCTTGAAGTATACATATGCCT 59.445 38.462 5.50 0.00 0.00 4.75
568 806 6.763355 AGTCCTTGAAGTATACATATGCCTG 58.237 40.000 5.50 0.00 0.00 4.85
569 807 5.409826 GTCCTTGAAGTATACATATGCCTGC 59.590 44.000 5.50 0.00 0.00 4.85
570 808 5.071653 TCCTTGAAGTATACATATGCCTGCA 59.928 40.000 5.50 0.00 0.00 4.41
571 809 5.942236 CCTTGAAGTATACATATGCCTGCAT 59.058 40.000 9.87 9.87 40.19 3.96
572 810 7.038373 TCCTTGAAGTATACATATGCCTGCATA 60.038 37.037 13.74 13.74 42.28 3.14
573 811 7.607607 CCTTGAAGTATACATATGCCTGCATAA 59.392 37.037 15.18 0.61 41.53 1.90
574 812 8.916628 TTGAAGTATACATATGCCTGCATAAA 57.083 30.769 15.18 5.52 41.53 1.40
575 813 8.916628 TGAAGTATACATATGCCTGCATAAAA 57.083 30.769 15.18 5.20 41.53 1.52
576 814 9.002600 TGAAGTATACATATGCCTGCATAAAAG 57.997 33.333 15.18 10.78 41.53 2.27
577 815 8.924511 AAGTATACATATGCCTGCATAAAAGT 57.075 30.769 15.18 15.06 41.53 2.66
578 816 8.924511 AGTATACATATGCCTGCATAAAAGTT 57.075 30.769 15.18 8.37 41.53 2.66
583 821 2.753296 TGCCTGCATAAAAGTTGTTGC 58.247 42.857 0.00 0.00 35.67 4.17
612 850 9.389570 GTACATACGCATTTACCCATTATTTTC 57.610 33.333 0.00 0.00 0.00 2.29
622 861 9.942526 ATTTACCCATTATTTTCCTCTGATTCT 57.057 29.630 0.00 0.00 0.00 2.40
689 977 2.058798 CAAGCAGCACAGAATTGCAAG 58.941 47.619 4.94 0.00 45.62 4.01
719 1007 2.283173 GCCAAGTTCACCCAGGGG 60.283 66.667 11.37 6.87 42.03 4.79
767 1094 2.019807 TCCGAGGACCAAACCTTACT 57.980 50.000 0.00 0.00 40.73 2.24
781 1108 0.593128 CTTACTTGTGGTGTGCTGGC 59.407 55.000 0.00 0.00 0.00 4.85
782 1109 0.182537 TTACTTGTGGTGTGCTGGCT 59.817 50.000 0.00 0.00 0.00 4.75
784 1111 1.103398 ACTTGTGGTGTGCTGGCTTC 61.103 55.000 0.00 0.00 0.00 3.86
803 1131 3.322211 TCAATCTTGCCAGCAAATTGG 57.678 42.857 24.00 10.07 41.35 3.16
853 1181 1.633774 TCTCTCACAAGGGACAGGAC 58.366 55.000 0.00 0.00 0.00 3.85
866 1195 3.005554 GGACAGGACAACAGACATCATG 58.994 50.000 0.00 0.00 0.00 3.07
907 1239 6.391227 TGTCCAAGAAAAGGAAATCAAGAC 57.609 37.500 0.00 0.00 36.80 3.01
965 1300 3.053828 GCCACAAGCACCAGCAAT 58.946 55.556 0.00 0.00 45.49 3.56
1278 1661 4.329545 GCCAGGCTCGTGTTCCCA 62.330 66.667 3.29 0.00 0.00 4.37
1402 1785 2.900546 CTCTACACCAAGGACCTTGTCT 59.099 50.000 28.45 13.44 39.58 3.41
1645 2031 0.725117 GAAATAAGCCCGTCCGTGTG 59.275 55.000 0.00 0.00 0.00 3.82
1664 2050 0.441145 GTCGTGCCGTATGTTTGGTC 59.559 55.000 0.00 0.00 0.00 4.02
1669 2055 2.292292 GTGCCGTATGTTTGGTCTTGTT 59.708 45.455 0.00 0.00 0.00 2.83
1670 2056 2.550606 TGCCGTATGTTTGGTCTTGTTC 59.449 45.455 0.00 0.00 0.00 3.18
1671 2057 2.812011 GCCGTATGTTTGGTCTTGTTCT 59.188 45.455 0.00 0.00 0.00 3.01
1674 2060 4.320202 CCGTATGTTTGGTCTTGTTCTTGG 60.320 45.833 0.00 0.00 0.00 3.61
1675 2061 3.733443 ATGTTTGGTCTTGTTCTTGGC 57.267 42.857 0.00 0.00 0.00 4.52
1676 2062 2.451490 TGTTTGGTCTTGTTCTTGGCA 58.549 42.857 0.00 0.00 0.00 4.92
1677 2063 2.165437 TGTTTGGTCTTGTTCTTGGCAC 59.835 45.455 0.00 0.00 0.00 5.01
1678 2064 2.427095 GTTTGGTCTTGTTCTTGGCACT 59.573 45.455 0.00 0.00 0.00 4.40
1754 2154 0.816825 CGAGCTATGCAGGCAACCAT 60.817 55.000 15.25 0.00 37.17 3.55
1934 2341 2.634600 GTTGTGTGTGGTGAGTTGGTA 58.365 47.619 0.00 0.00 0.00 3.25
1935 2342 3.211045 GTTGTGTGTGGTGAGTTGGTAT 58.789 45.455 0.00 0.00 0.00 2.73
2366 3677 3.216371 TCCCCCTCCCAGGAAGGT 61.216 66.667 0.00 0.00 37.67 3.50
2367 3678 3.017581 CCCCCTCCCAGGAAGGTG 61.018 72.222 0.00 0.00 37.67 4.00
2368 3679 2.204151 CCCCTCCCAGGAAGGTGT 60.204 66.667 0.00 0.00 37.67 4.16
2369 3680 1.852626 CCCCTCCCAGGAAGGTGTT 60.853 63.158 0.00 0.00 37.67 3.32
2370 3681 1.380302 CCCTCCCAGGAAGGTGTTG 59.620 63.158 0.00 0.00 37.67 3.33
2372 3683 1.133809 CCTCCCAGGAAGGTGTTGGA 61.134 60.000 0.00 0.00 37.67 3.53
2374 3685 1.144913 CTCCCAGGAAGGTGTTGGAAA 59.855 52.381 0.00 0.00 33.76 3.13
2375 3686 1.786441 TCCCAGGAAGGTGTTGGAAAT 59.214 47.619 0.00 0.00 33.76 2.17
2376 3687 2.990284 TCCCAGGAAGGTGTTGGAAATA 59.010 45.455 0.00 0.00 33.76 1.40
2377 3688 3.596046 TCCCAGGAAGGTGTTGGAAATAT 59.404 43.478 0.00 0.00 33.76 1.28
2378 3689 3.701040 CCCAGGAAGGTGTTGGAAATATG 59.299 47.826 0.00 0.00 33.76 1.78
2379 3690 4.569653 CCCAGGAAGGTGTTGGAAATATGA 60.570 45.833 0.00 0.00 33.76 2.15
2380 3691 4.641989 CCAGGAAGGTGTTGGAAATATGAG 59.358 45.833 0.00 0.00 33.76 2.90
2381 3692 5.500234 CAGGAAGGTGTTGGAAATATGAGA 58.500 41.667 0.00 0.00 0.00 3.27
2382 3693 5.945784 CAGGAAGGTGTTGGAAATATGAGAA 59.054 40.000 0.00 0.00 0.00 2.87
2383 3694 6.434028 CAGGAAGGTGTTGGAAATATGAGAAA 59.566 38.462 0.00 0.00 0.00 2.52
2384 3695 7.010160 AGGAAGGTGTTGGAAATATGAGAAAA 58.990 34.615 0.00 0.00 0.00 2.29
2385 3696 7.675619 AGGAAGGTGTTGGAAATATGAGAAAAT 59.324 33.333 0.00 0.00 0.00 1.82
2386 3697 8.314021 GGAAGGTGTTGGAAATATGAGAAAATT 58.686 33.333 0.00 0.00 0.00 1.82
2389 3700 9.533831 AGGTGTTGGAAATATGAGAAAATTACT 57.466 29.630 0.00 0.00 0.00 2.24
2434 3745 7.502120 ACAGAATATAAATCATGACCACAGC 57.498 36.000 0.00 0.00 0.00 4.40
2435 3746 7.056006 ACAGAATATAAATCATGACCACAGCA 58.944 34.615 0.00 0.00 0.00 4.41
2436 3747 7.228108 ACAGAATATAAATCATGACCACAGCAG 59.772 37.037 0.00 0.00 0.00 4.24
2437 3748 5.954296 ATATAAATCATGACCACAGCAGC 57.046 39.130 0.00 0.00 0.00 5.25
2438 3749 1.913778 AAATCATGACCACAGCAGCA 58.086 45.000 0.00 0.00 0.00 4.41
2439 3750 1.460504 AATCATGACCACAGCAGCAG 58.539 50.000 0.00 0.00 0.00 4.24
2440 3751 0.616891 ATCATGACCACAGCAGCAGA 59.383 50.000 0.00 0.00 0.00 4.26
2441 3752 0.036671 TCATGACCACAGCAGCAGAG 60.037 55.000 0.00 0.00 0.00 3.35
2442 3753 0.036671 CATGACCACAGCAGCAGAGA 60.037 55.000 0.00 0.00 0.00 3.10
2443 3754 0.910338 ATGACCACAGCAGCAGAGAT 59.090 50.000 0.00 0.00 0.00 2.75
2444 3755 0.689055 TGACCACAGCAGCAGAGATT 59.311 50.000 0.00 0.00 0.00 2.40
2445 3756 1.901833 TGACCACAGCAGCAGAGATTA 59.098 47.619 0.00 0.00 0.00 1.75
2446 3757 2.302733 TGACCACAGCAGCAGAGATTAA 59.697 45.455 0.00 0.00 0.00 1.40
2447 3758 3.244526 TGACCACAGCAGCAGAGATTAAA 60.245 43.478 0.00 0.00 0.00 1.52
2448 3759 3.077359 ACCACAGCAGCAGAGATTAAAC 58.923 45.455 0.00 0.00 0.00 2.01
2449 3760 3.244700 ACCACAGCAGCAGAGATTAAACT 60.245 43.478 0.00 0.00 0.00 2.66
2450 3761 4.020218 ACCACAGCAGCAGAGATTAAACTA 60.020 41.667 0.00 0.00 0.00 2.24
2451 3762 4.937620 CCACAGCAGCAGAGATTAAACTAA 59.062 41.667 0.00 0.00 0.00 2.24
2452 3763 5.587844 CCACAGCAGCAGAGATTAAACTAAT 59.412 40.000 0.00 0.00 0.00 1.73
2453 3764 6.238320 CCACAGCAGCAGAGATTAAACTAATC 60.238 42.308 0.00 0.00 43.77 1.75
2454 3765 6.314648 CACAGCAGCAGAGATTAAACTAATCA 59.685 38.462 8.66 0.00 45.41 2.57
2455 3766 7.012138 CACAGCAGCAGAGATTAAACTAATCAT 59.988 37.037 8.66 0.00 45.41 2.45
2456 3767 7.012138 ACAGCAGCAGAGATTAAACTAATCATG 59.988 37.037 8.66 7.75 45.41 3.07
2465 3776 9.657121 GAGATTAAACTAATCATGCAAACTAGC 57.343 33.333 8.66 0.00 45.41 3.42
2466 3777 9.177608 AGATTAAACTAATCATGCAAACTAGCA 57.822 29.630 8.66 0.00 45.41 3.49
2476 3787 4.141233 TGCAAACTAGCATAGCAGATGA 57.859 40.909 2.96 0.00 44.39 2.92
2477 3788 4.516323 TGCAAACTAGCATAGCAGATGAA 58.484 39.130 2.96 0.00 44.39 2.57
2478 3789 4.333649 TGCAAACTAGCATAGCAGATGAAC 59.666 41.667 2.96 0.00 44.39 3.18
2479 3790 4.333649 GCAAACTAGCATAGCAGATGAACA 59.666 41.667 2.96 0.00 44.39 3.18
2480 3791 5.008415 GCAAACTAGCATAGCAGATGAACAT 59.992 40.000 2.96 0.00 44.39 2.71
2481 3792 6.203530 GCAAACTAGCATAGCAGATGAACATA 59.796 38.462 2.96 0.00 44.39 2.29
2482 3793 7.094890 GCAAACTAGCATAGCAGATGAACATAT 60.095 37.037 2.96 0.00 44.39 1.78
2483 3794 8.441608 CAAACTAGCATAGCAGATGAACATATC 58.558 37.037 2.96 0.00 44.39 1.63
2484 3795 7.237209 ACTAGCATAGCAGATGAACATATCA 57.763 36.000 2.96 0.00 44.39 2.15
2485 3796 7.095910 ACTAGCATAGCAGATGAACATATCAC 58.904 38.462 2.96 0.00 44.39 3.06
2486 3797 5.861727 AGCATAGCAGATGAACATATCACA 58.138 37.500 2.96 0.00 41.93 3.58
2487 3798 6.473758 AGCATAGCAGATGAACATATCACAT 58.526 36.000 2.96 0.00 41.93 3.21
2488 3799 6.594547 AGCATAGCAGATGAACATATCACATC 59.405 38.462 2.96 0.00 41.93 3.06
2490 3801 7.763071 GCATAGCAGATGAACATATCACATCTA 59.237 37.037 0.00 0.00 45.61 1.98
2491 3802 9.303537 CATAGCAGATGAACATATCACATCTAG 57.696 37.037 0.00 0.00 45.61 2.43
2492 3803 6.699366 AGCAGATGAACATATCACATCTAGG 58.301 40.000 0.00 0.00 45.61 3.02
2493 3804 5.873712 GCAGATGAACATATCACATCTAGGG 59.126 44.000 0.00 0.00 45.61 3.53
2494 3805 5.873712 CAGATGAACATATCACATCTAGGGC 59.126 44.000 0.00 0.00 45.61 5.19
2495 3806 5.545335 AGATGAACATATCACATCTAGGGCA 59.455 40.000 0.00 0.00 45.55 5.36
2496 3807 4.960938 TGAACATATCACATCTAGGGCAC 58.039 43.478 0.00 0.00 31.50 5.01
2497 3808 4.408596 TGAACATATCACATCTAGGGCACA 59.591 41.667 0.00 0.00 31.50 4.57
2498 3809 5.072193 TGAACATATCACATCTAGGGCACAT 59.928 40.000 0.00 0.00 31.50 3.21
2499 3810 6.269769 TGAACATATCACATCTAGGGCACATA 59.730 38.462 0.00 0.00 31.50 2.29
2500 3811 6.042638 ACATATCACATCTAGGGCACATAC 57.957 41.667 0.00 0.00 0.00 2.39
2501 3812 5.782331 ACATATCACATCTAGGGCACATACT 59.218 40.000 0.00 0.00 0.00 2.12
2502 3813 6.954102 ACATATCACATCTAGGGCACATACTA 59.046 38.462 0.00 0.00 0.00 1.82
2503 3814 5.991933 ATCACATCTAGGGCACATACTAG 57.008 43.478 0.00 0.00 38.38 2.57
2504 3815 5.061721 TCACATCTAGGGCACATACTAGA 57.938 43.478 0.00 4.14 46.80 2.43
2505 3816 5.454966 TCACATCTAGGGCACATACTAGAA 58.545 41.667 0.00 0.00 46.12 2.10
2506 3817 5.897250 TCACATCTAGGGCACATACTAGAAA 59.103 40.000 0.00 0.00 46.12 2.52
2507 3818 5.986135 CACATCTAGGGCACATACTAGAAAC 59.014 44.000 0.00 0.00 46.12 2.78
2508 3819 5.661312 ACATCTAGGGCACATACTAGAAACA 59.339 40.000 0.00 0.00 46.12 2.83
2509 3820 6.327626 ACATCTAGGGCACATACTAGAAACAT 59.672 38.462 0.00 0.00 46.12 2.71
2510 3821 6.161855 TCTAGGGCACATACTAGAAACATG 57.838 41.667 0.00 0.00 41.84 3.21
2511 3822 5.897250 TCTAGGGCACATACTAGAAACATGA 59.103 40.000 0.00 0.00 41.84 3.07
2512 3823 5.435686 AGGGCACATACTAGAAACATGAA 57.564 39.130 0.00 0.00 0.00 2.57
2513 3824 6.006275 AGGGCACATACTAGAAACATGAAT 57.994 37.500 0.00 0.00 0.00 2.57
2514 3825 6.426587 AGGGCACATACTAGAAACATGAATT 58.573 36.000 0.00 0.00 0.00 2.17
2515 3826 6.543831 AGGGCACATACTAGAAACATGAATTC 59.456 38.462 0.00 3.71 0.00 2.17
2516 3827 6.543831 GGGCACATACTAGAAACATGAATTCT 59.456 38.462 18.00 18.00 40.18 2.40
2517 3828 7.715249 GGGCACATACTAGAAACATGAATTCTA 59.285 37.037 18.23 18.23 38.13 2.10
2518 3829 8.552034 GGCACATACTAGAAACATGAATTCTAC 58.448 37.037 16.49 8.90 38.13 2.59
2519 3830 8.552034 GCACATACTAGAAACATGAATTCTACC 58.448 37.037 16.49 0.00 38.13 3.18
2520 3831 9.599866 CACATACTAGAAACATGAATTCTACCA 57.400 33.333 16.49 10.50 38.13 3.25
2521 3832 9.601217 ACATACTAGAAACATGAATTCTACCAC 57.399 33.333 16.49 0.00 38.13 4.16
2522 3833 8.755941 CATACTAGAAACATGAATTCTACCACG 58.244 37.037 16.49 11.76 38.13 4.94
2523 3834 6.931838 ACTAGAAACATGAATTCTACCACGA 58.068 36.000 16.49 3.95 38.13 4.35
2524 3835 7.556844 ACTAGAAACATGAATTCTACCACGAT 58.443 34.615 16.49 0.00 38.13 3.73
2525 3836 6.910536 AGAAACATGAATTCTACCACGATC 57.089 37.500 14.15 0.00 35.43 3.69
2526 3837 6.644347 AGAAACATGAATTCTACCACGATCT 58.356 36.000 14.15 0.00 35.43 2.75
2527 3838 6.758886 AGAAACATGAATTCTACCACGATCTC 59.241 38.462 14.15 0.00 35.43 2.75
2528 3839 4.611943 ACATGAATTCTACCACGATCTCG 58.388 43.478 7.05 0.00 46.33 4.04
2529 3840 4.338400 ACATGAATTCTACCACGATCTCGA 59.662 41.667 7.05 0.00 43.02 4.04
2530 3841 4.976224 TGAATTCTACCACGATCTCGAA 57.024 40.909 7.05 0.00 43.02 3.71
2531 3842 4.669318 TGAATTCTACCACGATCTCGAAC 58.331 43.478 7.05 0.00 43.02 3.95
2532 3843 4.157105 TGAATTCTACCACGATCTCGAACA 59.843 41.667 7.05 0.00 43.02 3.18
2533 3844 4.713824 ATTCTACCACGATCTCGAACAA 57.286 40.909 6.60 0.00 43.02 2.83
2534 3845 3.759527 TCTACCACGATCTCGAACAAG 57.240 47.619 6.60 0.00 43.02 3.16
2535 3846 3.340928 TCTACCACGATCTCGAACAAGA 58.659 45.455 6.60 1.73 43.02 3.02
2536 3847 3.754850 TCTACCACGATCTCGAACAAGAA 59.245 43.478 6.60 0.00 43.02 2.52
2537 3848 2.947852 ACCACGATCTCGAACAAGAAG 58.052 47.619 6.60 0.00 43.02 2.85
2538 3849 2.263077 CCACGATCTCGAACAAGAAGG 58.737 52.381 6.60 0.00 43.02 3.46
2539 3850 2.094700 CCACGATCTCGAACAAGAAGGA 60.095 50.000 6.60 0.00 43.02 3.36
2540 3851 3.429547 CCACGATCTCGAACAAGAAGGAT 60.430 47.826 6.60 0.00 43.02 3.24
2541 3852 4.202020 CCACGATCTCGAACAAGAAGGATA 60.202 45.833 6.60 0.00 43.02 2.59
2542 3853 4.973051 CACGATCTCGAACAAGAAGGATAG 59.027 45.833 6.60 0.00 43.02 2.08
2543 3854 4.882427 ACGATCTCGAACAAGAAGGATAGA 59.118 41.667 6.60 0.00 43.02 1.98
2544 3855 5.357314 ACGATCTCGAACAAGAAGGATAGAA 59.643 40.000 6.60 0.00 43.02 2.10
2545 3856 6.039941 ACGATCTCGAACAAGAAGGATAGAAT 59.960 38.462 6.60 0.00 43.02 2.40
2546 3857 6.580791 CGATCTCGAACAAGAAGGATAGAATC 59.419 42.308 0.00 0.00 43.02 2.52
2547 3858 6.775594 TCTCGAACAAGAAGGATAGAATCA 57.224 37.500 0.00 0.00 0.00 2.57
2548 3859 6.565234 TCTCGAACAAGAAGGATAGAATCAC 58.435 40.000 0.00 0.00 0.00 3.06
2549 3860 6.152831 TCTCGAACAAGAAGGATAGAATCACA 59.847 38.462 0.00 0.00 0.00 3.58
2550 3861 6.878317 TCGAACAAGAAGGATAGAATCACAT 58.122 36.000 0.00 0.00 0.00 3.21
2551 3862 8.007405 TCGAACAAGAAGGATAGAATCACATA 57.993 34.615 0.00 0.00 0.00 2.29
2552 3863 7.921214 TCGAACAAGAAGGATAGAATCACATAC 59.079 37.037 0.00 0.00 0.00 2.39
2553 3864 7.096436 CGAACAAGAAGGATAGAATCACATACG 60.096 40.741 0.00 0.00 0.00 3.06
2554 3865 6.516718 ACAAGAAGGATAGAATCACATACGG 58.483 40.000 0.00 0.00 0.00 4.02
2555 3866 6.098409 ACAAGAAGGATAGAATCACATACGGT 59.902 38.462 0.00 0.00 0.00 4.83
2563 3874 3.195002 CACATACGGTGCAGCGGG 61.195 66.667 37.73 28.25 41.36 6.13
2564 3875 3.702048 ACATACGGTGCAGCGGGT 61.702 61.111 37.73 28.86 0.00 5.28
2565 3876 3.195002 CATACGGTGCAGCGGGTG 61.195 66.667 37.73 30.07 0.00 4.61
2588 3899 4.459331 CCGCCGGCGTTGATGTTG 62.459 66.667 43.12 24.12 37.81 3.33
2589 3900 3.722295 CGCCGGCGTTGATGTTGT 61.722 61.111 39.71 0.00 34.35 3.32
2590 3901 2.175811 GCCGGCGTTGATGTTGTC 59.824 61.111 12.58 0.00 0.00 3.18
2591 3902 2.474266 CCGGCGTTGATGTTGTCG 59.526 61.111 6.01 0.00 0.00 4.35
2592 3903 2.202171 CGGCGTTGATGTTGTCGC 60.202 61.111 0.00 0.00 46.42 5.19
2594 3905 2.175811 GCGTTGATGTTGTCGCCC 59.824 61.111 0.00 0.00 42.33 6.13
2595 3906 2.612567 GCGTTGATGTTGTCGCCCA 61.613 57.895 0.00 0.00 42.33 5.36
2596 3907 1.922135 GCGTTGATGTTGTCGCCCAT 61.922 55.000 0.00 0.00 42.33 4.00
2597 3908 0.179192 CGTTGATGTTGTCGCCCATG 60.179 55.000 0.00 0.00 0.00 3.66
2598 3909 0.881118 GTTGATGTTGTCGCCCATGT 59.119 50.000 0.00 0.00 0.00 3.21
2599 3910 1.135689 GTTGATGTTGTCGCCCATGTC 60.136 52.381 0.00 0.00 0.00 3.06
2600 3911 1.018752 TGATGTTGTCGCCCATGTCG 61.019 55.000 0.00 0.00 0.00 4.35
2601 3912 1.003839 ATGTTGTCGCCCATGTCGT 60.004 52.632 4.83 0.00 0.00 4.34
2602 3913 1.019278 ATGTTGTCGCCCATGTCGTC 61.019 55.000 4.83 0.93 0.00 4.20
2603 3914 2.431771 TTGTCGCCCATGTCGTCG 60.432 61.111 4.83 0.00 0.00 5.12
2604 3915 2.921797 TTGTCGCCCATGTCGTCGA 61.922 57.895 0.00 0.00 0.00 4.20
2605 3916 2.579787 GTCGCCCATGTCGTCGAG 60.580 66.667 0.00 0.00 0.00 4.04
2606 3917 3.822192 TCGCCCATGTCGTCGAGG 61.822 66.667 0.00 0.00 0.00 4.63
2607 3918 3.822192 CGCCCATGTCGTCGAGGA 61.822 66.667 3.17 3.17 0.00 3.71
2608 3919 2.815308 GCCCATGTCGTCGAGGAT 59.185 61.111 11.48 0.00 0.00 3.24
2609 3920 1.592669 GCCCATGTCGTCGAGGATG 60.593 63.158 11.48 6.43 0.00 3.51
2610 3921 2.016393 GCCCATGTCGTCGAGGATGA 62.016 60.000 11.48 1.74 0.00 2.92
2611 3922 0.031314 CCCATGTCGTCGAGGATGAG 59.969 60.000 11.48 4.15 0.00 2.90
2612 3923 0.031314 CCATGTCGTCGAGGATGAGG 59.969 60.000 11.48 9.30 0.00 3.86
2613 3924 0.741326 CATGTCGTCGAGGATGAGGT 59.259 55.000 11.48 0.00 0.00 3.85
2614 3925 1.135139 CATGTCGTCGAGGATGAGGTT 59.865 52.381 11.48 0.00 0.00 3.50
2615 3926 0.526211 TGTCGTCGAGGATGAGGTTG 59.474 55.000 11.48 0.00 0.00 3.77
2616 3927 0.802607 GTCGTCGAGGATGAGGTTGC 60.803 60.000 11.48 0.00 0.00 4.17
2617 3928 1.519455 CGTCGAGGATGAGGTTGCC 60.519 63.158 0.00 0.00 0.00 4.52
2618 3929 1.519455 GTCGAGGATGAGGTTGCCG 60.519 63.158 0.00 0.00 0.00 5.69
2619 3930 1.680989 TCGAGGATGAGGTTGCCGA 60.681 57.895 0.00 0.00 0.00 5.54
2620 3931 1.227089 CGAGGATGAGGTTGCCGAG 60.227 63.158 0.00 0.00 0.00 4.63
2621 3932 1.144936 GAGGATGAGGTTGCCGAGG 59.855 63.158 0.00 0.00 0.00 4.63
2622 3933 1.613630 AGGATGAGGTTGCCGAGGT 60.614 57.895 0.00 0.00 0.00 3.85
2623 3934 1.153349 GGATGAGGTTGCCGAGGTC 60.153 63.158 0.00 0.00 0.00 3.85
2624 3935 1.519455 GATGAGGTTGCCGAGGTCG 60.519 63.158 0.00 0.00 39.44 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.172875 CAGAACATCCCAAAAATTATGTTGCAA 59.827 33.333 6.72 0.00 41.37 4.08
1 2 6.649973 CAGAACATCCCAAAAATTATGTTGCA 59.350 34.615 6.72 0.00 41.37 4.08
2 3 6.650390 ACAGAACATCCCAAAAATTATGTTGC 59.350 34.615 6.72 1.01 41.37 4.17
3 4 8.606040 AACAGAACATCCCAAAAATTATGTTG 57.394 30.769 6.72 0.00 41.37 3.33
4 5 9.625747 AAAACAGAACATCCCAAAAATTATGTT 57.374 25.926 2.41 2.41 43.36 2.71
9 10 7.795047 AGAGAAAACAGAACATCCCAAAAATT 58.205 30.769 0.00 0.00 0.00 1.82
11 12 6.790232 AGAGAAAACAGAACATCCCAAAAA 57.210 33.333 0.00 0.00 0.00 1.94
25 26 7.709182 TGTATTTCGAGTTGAGAAGAGAAAACA 59.291 33.333 0.00 0.00 32.44 2.83
43 44 7.987268 TCATAGTGTAGCTTTCTGTATTTCG 57.013 36.000 0.00 0.00 0.00 3.46
44 45 8.604890 GGTTCATAGTGTAGCTTTCTGTATTTC 58.395 37.037 0.00 0.00 0.00 2.17
64 65 4.307032 ACTTGCTATTGGACTGGTTCAT 57.693 40.909 0.00 0.00 0.00 2.57
70 71 3.755378 AGCTGAAACTTGCTATTGGACTG 59.245 43.478 0.00 0.00 37.81 3.51
106 107 5.382664 AACGTCATTATATCAAAGGGGGT 57.617 39.130 0.00 0.00 0.00 4.95
107 108 6.460953 CCAAAACGTCATTATATCAAAGGGGG 60.461 42.308 0.00 0.00 0.00 5.40
108 109 6.096282 ACCAAAACGTCATTATATCAAAGGGG 59.904 38.462 0.00 0.00 0.00 4.79
109 110 7.095695 ACCAAAACGTCATTATATCAAAGGG 57.904 36.000 0.00 0.00 0.00 3.95
110 111 9.104965 TCTACCAAAACGTCATTATATCAAAGG 57.895 33.333 0.00 0.00 0.00 3.11
118 119 7.960738 CGTTCAAATCTACCAAAACGTCATTAT 59.039 33.333 0.00 0.00 35.89 1.28
119 120 7.292292 CGTTCAAATCTACCAAAACGTCATTA 58.708 34.615 0.00 0.00 35.89 1.90
120 121 6.140110 CGTTCAAATCTACCAAAACGTCATT 58.860 36.000 0.00 0.00 35.89 2.57
121 122 5.334569 CCGTTCAAATCTACCAAAACGTCAT 60.335 40.000 0.00 0.00 38.17 3.06
122 123 4.024725 CCGTTCAAATCTACCAAAACGTCA 60.025 41.667 0.00 0.00 38.17 4.35
123 124 4.211794 TCCGTTCAAATCTACCAAAACGTC 59.788 41.667 0.00 0.00 38.17 4.34
124 125 4.128643 TCCGTTCAAATCTACCAAAACGT 58.871 39.130 0.00 0.00 38.17 3.99
125 126 4.378046 CCTCCGTTCAAATCTACCAAAACG 60.378 45.833 0.00 0.00 39.20 3.60
126 127 4.082949 CCCTCCGTTCAAATCTACCAAAAC 60.083 45.833 0.00 0.00 0.00 2.43
127 128 4.076394 CCCTCCGTTCAAATCTACCAAAA 58.924 43.478 0.00 0.00 0.00 2.44
128 129 3.328343 TCCCTCCGTTCAAATCTACCAAA 59.672 43.478 0.00 0.00 0.00 3.28
133 134 2.829023 ACCTCCCTCCGTTCAAATCTA 58.171 47.619 0.00 0.00 0.00 1.98
144 145 4.838904 ACTTTGTATTGTACCTCCCTCC 57.161 45.455 0.00 0.00 0.00 4.30
179 180 9.658799 AGATAGTCCAATCCATATTAATTGTCG 57.341 33.333 0.00 0.00 32.20 4.35
193 194 9.364989 GCTCAGATTTATGTAGATAGTCCAATC 57.635 37.037 0.00 0.00 0.00 2.67
196 197 7.839680 TGCTCAGATTTATGTAGATAGTCCA 57.160 36.000 0.00 0.00 0.00 4.02
212 213 9.282569 GGTGAAAAATAGATAGATTGCTCAGAT 57.717 33.333 0.00 0.00 0.00 2.90
231 232 6.413892 AGAAATTCCAAAAGCAAGGTGAAAA 58.586 32.000 0.00 0.00 0.00 2.29
235 236 4.751600 GGAAGAAATTCCAAAAGCAAGGTG 59.248 41.667 2.14 0.00 40.79 4.00
294 295 5.890424 TGCGTCTATATACATCCGAATCA 57.110 39.130 0.00 0.00 0.00 2.57
335 338 6.295249 TGGACAACATACAGACTGAAATGAA 58.705 36.000 21.47 0.00 0.00 2.57
360 535 8.070171 CCCGTTCACAATTATGAGATGTTAATC 58.930 37.037 0.00 0.00 0.00 1.75
386 561 7.011669 TGGCATTACTTTTAATTAGTACTCCGC 59.988 37.037 0.00 0.00 0.00 5.54
387 562 8.428186 TGGCATTACTTTTAATTAGTACTCCG 57.572 34.615 0.00 0.00 0.00 4.63
440 615 2.304761 TCTACAATTCACAGGGTGGTCC 59.695 50.000 0.00 0.00 33.87 4.46
480 686 2.034687 CCCTGGGTGCAGTTCTGG 59.965 66.667 3.97 0.00 0.00 3.86
524 758 5.354234 GGACTCACAAACATGGTAATTCGAT 59.646 40.000 0.00 0.00 0.00 3.59
526 760 4.695455 AGGACTCACAAACATGGTAATTCG 59.305 41.667 0.00 0.00 0.00 3.34
548 782 8.552083 TTATGCAGGCATATGTATACTTCAAG 57.448 34.615 14.18 0.00 38.52 3.02
562 800 3.007182 AGCAACAACTTTTATGCAGGCAT 59.993 39.130 11.94 11.94 41.18 4.40
563 801 2.364970 AGCAACAACTTTTATGCAGGCA 59.635 40.909 0.00 0.00 41.18 4.75
564 802 3.030668 AGCAACAACTTTTATGCAGGC 57.969 42.857 0.00 0.00 41.18 4.85
565 803 5.376854 ACTAGCAACAACTTTTATGCAGG 57.623 39.130 0.00 0.00 41.18 4.85
566 804 6.898041 TGTACTAGCAACAACTTTTATGCAG 58.102 36.000 0.00 0.00 41.18 4.41
567 805 6.869315 TGTACTAGCAACAACTTTTATGCA 57.131 33.333 0.00 0.00 41.18 3.96
568 806 7.634817 CGTATGTACTAGCAACAACTTTTATGC 59.365 37.037 2.89 0.00 39.06 3.14
569 807 7.634817 GCGTATGTACTAGCAACAACTTTTATG 59.365 37.037 2.89 0.00 0.00 1.90
570 808 7.332430 TGCGTATGTACTAGCAACAACTTTTAT 59.668 33.333 2.89 0.00 36.60 1.40
571 809 6.645827 TGCGTATGTACTAGCAACAACTTTTA 59.354 34.615 2.89 0.00 36.60 1.52
572 810 5.467399 TGCGTATGTACTAGCAACAACTTTT 59.533 36.000 2.89 0.00 36.60 2.27
573 811 4.992319 TGCGTATGTACTAGCAACAACTTT 59.008 37.500 2.89 0.00 36.60 2.66
574 812 4.562082 TGCGTATGTACTAGCAACAACTT 58.438 39.130 2.89 0.00 36.60 2.66
575 813 4.182693 TGCGTATGTACTAGCAACAACT 57.817 40.909 2.89 0.00 36.60 3.16
576 814 5.464965 AATGCGTATGTACTAGCAACAAC 57.535 39.130 2.89 3.12 43.19 3.32
577 815 6.036300 GGTAAATGCGTATGTACTAGCAACAA 59.964 38.462 12.79 0.00 43.19 2.83
578 816 5.521010 GGTAAATGCGTATGTACTAGCAACA 59.479 40.000 12.79 1.34 43.19 3.33
583 821 8.997621 ATAATGGGTAAATGCGTATGTACTAG 57.002 34.615 12.79 0.00 29.37 2.57
612 850 7.972301 AGAGGTAAATTATGGAGAATCAGAGG 58.028 38.462 0.00 0.00 36.25 3.69
622 861 9.699410 ATTGTTGATTGAGAGGTAAATTATGGA 57.301 29.630 0.00 0.00 0.00 3.41
767 1094 0.682532 TTGAAGCCAGCACACCACAA 60.683 50.000 0.00 0.00 0.00 3.33
781 1108 3.682858 CCAATTTGCTGGCAAGATTGAAG 59.317 43.478 25.65 15.87 37.03 3.02
782 1109 3.666274 CCAATTTGCTGGCAAGATTGAA 58.334 40.909 25.65 9.67 37.03 2.69
853 1181 2.274437 CCGAGGACATGATGTCTGTTG 58.726 52.381 23.28 14.76 46.19 3.33
866 1195 1.609794 AGGTGGAGGAACCGAGGAC 60.610 63.158 0.00 0.00 45.53 3.85
907 1239 4.641989 AGGGTGCACTGCAATTTATAGAAG 59.358 41.667 17.98 0.00 41.47 2.85
1193 1574 3.113514 TTGGTGAGCGTGAAGGCCA 62.114 57.895 5.01 0.00 0.00 5.36
1195 1576 2.328099 CCTTGGTGAGCGTGAAGGC 61.328 63.158 0.00 0.00 0.00 4.35
1224 1607 4.735132 TTGAGCGCGGGGAACTCG 62.735 66.667 8.83 0.00 32.98 4.18
1664 2050 2.541588 CGGACAAAGTGCCAAGAACAAG 60.542 50.000 0.00 0.00 0.00 3.16
1669 2055 3.744559 GCGGACAAAGTGCCAAGA 58.255 55.556 0.00 0.00 0.00 3.02
1674 2060 2.830285 AACACGGCGGACAAAGTGC 61.830 57.895 13.24 0.00 38.08 4.40
1675 2061 1.010125 CAACACGGCGGACAAAGTG 60.010 57.895 13.24 0.00 40.17 3.16
1676 2062 1.450669 ACAACACGGCGGACAAAGT 60.451 52.632 13.24 0.00 0.00 2.66
1677 2063 1.010125 CACAACACGGCGGACAAAG 60.010 57.895 13.24 0.00 0.00 2.77
1678 2064 1.306642 AACACAACACGGCGGACAAA 61.307 50.000 13.24 0.00 0.00 2.83
1754 2154 2.355197 GTACCATGTGCATGCAGTACA 58.645 47.619 29.04 21.88 46.96 2.90
2120 2527 0.898789 AAGAAAGACCGCCGGAGAGA 60.899 55.000 11.71 0.00 0.00 3.10
2408 3719 8.408601 GCTGTGGTCATGATTTATATTCTGTTT 58.591 33.333 0.00 0.00 0.00 2.83
2409 3720 7.557358 TGCTGTGGTCATGATTTATATTCTGTT 59.443 33.333 0.00 0.00 0.00 3.16
2410 3721 7.056006 TGCTGTGGTCATGATTTATATTCTGT 58.944 34.615 0.00 0.00 0.00 3.41
2411 3722 7.500720 TGCTGTGGTCATGATTTATATTCTG 57.499 36.000 0.00 0.00 0.00 3.02
2412 3723 6.206243 GCTGCTGTGGTCATGATTTATATTCT 59.794 38.462 0.00 0.00 0.00 2.40
2413 3724 6.016860 TGCTGCTGTGGTCATGATTTATATTC 60.017 38.462 0.00 0.00 0.00 1.75
2414 3725 5.829391 TGCTGCTGTGGTCATGATTTATATT 59.171 36.000 0.00 0.00 0.00 1.28
2415 3726 5.379187 TGCTGCTGTGGTCATGATTTATAT 58.621 37.500 0.00 0.00 0.00 0.86
2416 3727 4.779696 TGCTGCTGTGGTCATGATTTATA 58.220 39.130 0.00 0.00 0.00 0.98
2417 3728 3.623703 TGCTGCTGTGGTCATGATTTAT 58.376 40.909 0.00 0.00 0.00 1.40
2418 3729 3.011818 CTGCTGCTGTGGTCATGATTTA 58.988 45.455 0.00 0.00 0.00 1.40
2419 3730 1.816835 CTGCTGCTGTGGTCATGATTT 59.183 47.619 0.00 0.00 0.00 2.17
2420 3731 1.003928 TCTGCTGCTGTGGTCATGATT 59.996 47.619 0.00 0.00 0.00 2.57
2421 3732 0.616891 TCTGCTGCTGTGGTCATGAT 59.383 50.000 0.00 0.00 0.00 2.45
2422 3733 0.036671 CTCTGCTGCTGTGGTCATGA 60.037 55.000 0.00 0.00 0.00 3.07
2423 3734 0.036671 TCTCTGCTGCTGTGGTCATG 60.037 55.000 0.00 0.00 0.00 3.07
2424 3735 0.910338 ATCTCTGCTGCTGTGGTCAT 59.090 50.000 0.00 0.00 0.00 3.06
2425 3736 0.689055 AATCTCTGCTGCTGTGGTCA 59.311 50.000 0.00 0.00 0.00 4.02
2426 3737 2.680312 TAATCTCTGCTGCTGTGGTC 57.320 50.000 0.00 0.00 0.00 4.02
2427 3738 3.077359 GTTTAATCTCTGCTGCTGTGGT 58.923 45.455 0.00 0.00 0.00 4.16
2428 3739 3.341823 AGTTTAATCTCTGCTGCTGTGG 58.658 45.455 0.00 0.00 0.00 4.17
2429 3740 6.314648 TGATTAGTTTAATCTCTGCTGCTGTG 59.685 38.462 0.00 1.40 43.79 3.66
2430 3741 6.409704 TGATTAGTTTAATCTCTGCTGCTGT 58.590 36.000 0.00 0.00 43.79 4.40
2431 3742 6.915544 TGATTAGTTTAATCTCTGCTGCTG 57.084 37.500 0.00 0.00 43.79 4.41
2432 3743 6.017275 GCATGATTAGTTTAATCTCTGCTGCT 60.017 38.462 18.75 0.00 43.34 4.24
2433 3744 6.141462 GCATGATTAGTTTAATCTCTGCTGC 58.859 40.000 18.75 0.00 43.34 5.25
2434 3745 7.255491 TGCATGATTAGTTTAATCTCTGCTG 57.745 36.000 22.41 11.09 44.89 4.41
2435 3746 7.870509 TTGCATGATTAGTTTAATCTCTGCT 57.129 32.000 22.41 0.00 44.89 4.24
2436 3747 8.186821 AGTTTGCATGATTAGTTTAATCTCTGC 58.813 33.333 18.98 18.98 44.88 4.26
2439 3750 9.657121 GCTAGTTTGCATGATTAGTTTAATCTC 57.343 33.333 0.00 1.91 43.79 2.75
2440 3751 9.177608 TGCTAGTTTGCATGATTAGTTTAATCT 57.822 29.630 0.00 0.00 40.38 2.40
2456 3767 4.333649 TGTTCATCTGCTATGCTAGTTTGC 59.666 41.667 0.00 0.00 0.00 3.68
2457 3768 6.615264 ATGTTCATCTGCTATGCTAGTTTG 57.385 37.500 0.00 0.00 0.00 2.93
2458 3769 8.152898 TGATATGTTCATCTGCTATGCTAGTTT 58.847 33.333 0.00 0.00 0.00 2.66
2459 3770 7.601886 GTGATATGTTCATCTGCTATGCTAGTT 59.398 37.037 0.00 0.00 36.54 2.24
2460 3771 7.095910 GTGATATGTTCATCTGCTATGCTAGT 58.904 38.462 0.00 0.00 36.54 2.57
2461 3772 7.095270 TGTGATATGTTCATCTGCTATGCTAG 58.905 38.462 0.00 0.00 36.54 3.42
2462 3773 6.996509 TGTGATATGTTCATCTGCTATGCTA 58.003 36.000 0.00 0.00 36.54 3.49
2463 3774 5.861727 TGTGATATGTTCATCTGCTATGCT 58.138 37.500 0.00 0.00 36.54 3.79
2464 3775 6.594547 AGATGTGATATGTTCATCTGCTATGC 59.405 38.462 10.93 0.00 44.08 3.14
2465 3776 9.303537 CTAGATGTGATATGTTCATCTGCTATG 57.696 37.037 17.11 0.00 44.95 2.23
2466 3777 8.476447 CCTAGATGTGATATGTTCATCTGCTAT 58.524 37.037 17.11 2.25 44.95 2.97
2467 3778 7.093596 CCCTAGATGTGATATGTTCATCTGCTA 60.094 40.741 17.11 4.46 44.95 3.49
2468 3779 6.295745 CCCTAGATGTGATATGTTCATCTGCT 60.296 42.308 17.11 0.00 44.95 4.24
2469 3780 5.873712 CCCTAGATGTGATATGTTCATCTGC 59.126 44.000 17.11 0.00 44.95 4.26
2470 3781 5.873712 GCCCTAGATGTGATATGTTCATCTG 59.126 44.000 17.11 10.70 44.95 2.90
2471 3782 5.545335 TGCCCTAGATGTGATATGTTCATCT 59.455 40.000 14.24 14.24 46.33 2.90
2472 3783 5.641209 GTGCCCTAGATGTGATATGTTCATC 59.359 44.000 0.00 0.00 36.54 2.92
2473 3784 5.072193 TGTGCCCTAGATGTGATATGTTCAT 59.928 40.000 0.00 0.00 36.54 2.57
2474 3785 4.408596 TGTGCCCTAGATGTGATATGTTCA 59.591 41.667 0.00 0.00 0.00 3.18
2475 3786 4.960938 TGTGCCCTAGATGTGATATGTTC 58.039 43.478 0.00 0.00 0.00 3.18
2476 3787 5.573380 ATGTGCCCTAGATGTGATATGTT 57.427 39.130 0.00 0.00 0.00 2.71
2477 3788 5.782331 AGTATGTGCCCTAGATGTGATATGT 59.218 40.000 0.00 0.00 0.00 2.29
2478 3789 6.291648 AGTATGTGCCCTAGATGTGATATG 57.708 41.667 0.00 0.00 0.00 1.78
2479 3790 7.414266 TCTAGTATGTGCCCTAGATGTGATAT 58.586 38.462 0.00 0.00 35.82 1.63
2480 3791 6.790319 TCTAGTATGTGCCCTAGATGTGATA 58.210 40.000 0.00 0.00 35.82 2.15
2481 3792 5.645201 TCTAGTATGTGCCCTAGATGTGAT 58.355 41.667 0.00 0.00 35.82 3.06
2482 3793 5.061721 TCTAGTATGTGCCCTAGATGTGA 57.938 43.478 0.00 0.00 35.82 3.58
2483 3794 5.791336 TTCTAGTATGTGCCCTAGATGTG 57.209 43.478 0.00 0.00 39.40 3.21
2484 3795 5.661312 TGTTTCTAGTATGTGCCCTAGATGT 59.339 40.000 0.00 0.00 39.40 3.06
2485 3796 6.161855 TGTTTCTAGTATGTGCCCTAGATG 57.838 41.667 0.00 0.00 39.40 2.90
2486 3797 6.554982 TCATGTTTCTAGTATGTGCCCTAGAT 59.445 38.462 0.00 0.00 39.40 1.98
2487 3798 5.897250 TCATGTTTCTAGTATGTGCCCTAGA 59.103 40.000 0.00 0.00 38.26 2.43
2488 3799 6.161855 TCATGTTTCTAGTATGTGCCCTAG 57.838 41.667 0.00 0.00 33.46 3.02
2489 3800 6.553953 TTCATGTTTCTAGTATGTGCCCTA 57.446 37.500 0.00 0.00 0.00 3.53
2490 3801 5.435686 TTCATGTTTCTAGTATGTGCCCT 57.564 39.130 0.00 0.00 0.00 5.19
2491 3802 6.543831 AGAATTCATGTTTCTAGTATGTGCCC 59.456 38.462 8.44 0.00 31.75 5.36
2492 3803 7.559590 AGAATTCATGTTTCTAGTATGTGCC 57.440 36.000 8.44 0.00 31.75 5.01
2493 3804 8.552034 GGTAGAATTCATGTTTCTAGTATGTGC 58.448 37.037 16.18 7.25 36.59 4.57
2494 3805 9.599866 TGGTAGAATTCATGTTTCTAGTATGTG 57.400 33.333 16.18 0.00 36.59 3.21
2495 3806 9.601217 GTGGTAGAATTCATGTTTCTAGTATGT 57.399 33.333 16.18 0.00 36.59 2.29
2496 3807 8.755941 CGTGGTAGAATTCATGTTTCTAGTATG 58.244 37.037 16.18 11.62 36.59 2.39
2497 3808 8.692710 TCGTGGTAGAATTCATGTTTCTAGTAT 58.307 33.333 16.18 0.65 36.59 2.12
2498 3809 8.058667 TCGTGGTAGAATTCATGTTTCTAGTA 57.941 34.615 16.18 9.12 36.59 1.82
2499 3810 6.931838 TCGTGGTAGAATTCATGTTTCTAGT 58.068 36.000 16.18 1.18 36.59 2.57
2500 3811 7.923344 AGATCGTGGTAGAATTCATGTTTCTAG 59.077 37.037 16.18 8.71 36.59 2.43
2501 3812 7.782049 AGATCGTGGTAGAATTCATGTTTCTA 58.218 34.615 8.44 13.40 35.19 2.10
2502 3813 6.644347 AGATCGTGGTAGAATTCATGTTTCT 58.356 36.000 8.44 14.90 37.25 2.52
2503 3814 6.291849 CGAGATCGTGGTAGAATTCATGTTTC 60.292 42.308 8.44 0.00 34.11 2.78
2504 3815 5.520288 CGAGATCGTGGTAGAATTCATGTTT 59.480 40.000 8.44 0.00 34.11 2.83
2505 3816 5.043903 CGAGATCGTGGTAGAATTCATGTT 58.956 41.667 8.44 0.00 34.11 2.71
2506 3817 4.338400 TCGAGATCGTGGTAGAATTCATGT 59.662 41.667 8.44 0.00 40.80 3.21
2507 3818 4.860072 TCGAGATCGTGGTAGAATTCATG 58.140 43.478 8.44 0.00 40.80 3.07
2508 3819 5.163550 TGTTCGAGATCGTGGTAGAATTCAT 60.164 40.000 8.44 0.00 40.80 2.57
2509 3820 4.157105 TGTTCGAGATCGTGGTAGAATTCA 59.843 41.667 8.44 0.00 40.80 2.57
2510 3821 4.669318 TGTTCGAGATCGTGGTAGAATTC 58.331 43.478 0.00 0.00 40.80 2.17
2511 3822 4.713824 TGTTCGAGATCGTGGTAGAATT 57.286 40.909 1.70 0.00 40.80 2.17
2512 3823 4.398358 TCTTGTTCGAGATCGTGGTAGAAT 59.602 41.667 1.70 0.00 40.80 2.40
2513 3824 3.754850 TCTTGTTCGAGATCGTGGTAGAA 59.245 43.478 1.70 0.00 40.80 2.10
2514 3825 3.340928 TCTTGTTCGAGATCGTGGTAGA 58.659 45.455 1.70 0.05 40.80 2.59
2515 3826 3.759527 TCTTGTTCGAGATCGTGGTAG 57.240 47.619 1.70 0.00 40.80 3.18
2516 3827 3.119602 CCTTCTTGTTCGAGATCGTGGTA 60.120 47.826 1.70 0.00 40.80 3.25
2517 3828 2.352814 CCTTCTTGTTCGAGATCGTGGT 60.353 50.000 1.70 0.00 40.80 4.16
2518 3829 2.094700 TCCTTCTTGTTCGAGATCGTGG 60.095 50.000 1.70 0.00 40.80 4.94
2519 3830 3.217599 TCCTTCTTGTTCGAGATCGTG 57.782 47.619 1.70 0.00 40.80 4.35
2520 3831 4.882427 TCTATCCTTCTTGTTCGAGATCGT 59.118 41.667 1.70 0.00 40.80 3.73
2521 3832 5.425577 TCTATCCTTCTTGTTCGAGATCG 57.574 43.478 0.00 0.00 41.45 3.69
2522 3833 7.381139 GTGATTCTATCCTTCTTGTTCGAGATC 59.619 40.741 0.00 0.00 0.00 2.75
2523 3834 7.147828 TGTGATTCTATCCTTCTTGTTCGAGAT 60.148 37.037 0.00 0.00 0.00 2.75
2524 3835 6.152831 TGTGATTCTATCCTTCTTGTTCGAGA 59.847 38.462 0.00 0.00 0.00 4.04
2525 3836 6.333416 TGTGATTCTATCCTTCTTGTTCGAG 58.667 40.000 0.00 0.00 0.00 4.04
2526 3837 6.280855 TGTGATTCTATCCTTCTTGTTCGA 57.719 37.500 0.00 0.00 0.00 3.71
2527 3838 7.096436 CGTATGTGATTCTATCCTTCTTGTTCG 60.096 40.741 0.00 0.00 0.00 3.95
2528 3839 7.169982 CCGTATGTGATTCTATCCTTCTTGTTC 59.830 40.741 0.00 0.00 0.00 3.18
2529 3840 6.986817 CCGTATGTGATTCTATCCTTCTTGTT 59.013 38.462 0.00 0.00 0.00 2.83
2530 3841 6.098409 ACCGTATGTGATTCTATCCTTCTTGT 59.902 38.462 0.00 0.00 0.00 3.16
2531 3842 6.516718 ACCGTATGTGATTCTATCCTTCTTG 58.483 40.000 0.00 0.00 0.00 3.02
2532 3843 6.732896 ACCGTATGTGATTCTATCCTTCTT 57.267 37.500 0.00 0.00 0.00 2.52
2547 3858 3.702048 ACCCGCTGCACCGTATGT 61.702 61.111 0.00 0.00 0.00 2.29
2548 3859 3.195002 CACCCGCTGCACCGTATG 61.195 66.667 0.00 0.00 0.00 2.39
2572 3883 3.645157 GACAACATCAACGCCGGCG 62.645 63.158 44.88 44.88 46.03 6.46
2573 3884 2.175811 GACAACATCAACGCCGGC 59.824 61.111 19.07 19.07 0.00 6.13
2574 3885 2.474266 CGACAACATCAACGCCGG 59.526 61.111 0.00 0.00 0.00 6.13
2575 3886 2.202171 GCGACAACATCAACGCCG 60.202 61.111 0.00 0.00 44.27 6.46
2578 3889 0.179192 CATGGGCGACAACATCAACG 60.179 55.000 0.00 0.00 0.00 4.10
2579 3890 0.881118 ACATGGGCGACAACATCAAC 59.119 50.000 0.00 0.00 0.00 3.18
2580 3891 1.164411 GACATGGGCGACAACATCAA 58.836 50.000 0.00 0.00 0.00 2.57
2581 3892 1.018752 CGACATGGGCGACAACATCA 61.019 55.000 4.45 0.00 0.00 3.07
2582 3893 1.019278 ACGACATGGGCGACAACATC 61.019 55.000 15.69 0.00 0.00 3.06
2583 3894 1.003839 ACGACATGGGCGACAACAT 60.004 52.632 15.69 0.00 0.00 2.71
2584 3895 1.666553 GACGACATGGGCGACAACA 60.667 57.895 15.69 0.00 0.00 3.33
2585 3896 2.726691 CGACGACATGGGCGACAAC 61.727 63.158 15.69 4.97 0.00 3.32
2586 3897 2.431771 CGACGACATGGGCGACAA 60.432 61.111 15.69 0.00 0.00 3.18
2587 3898 3.336715 CTCGACGACATGGGCGACA 62.337 63.158 15.69 0.00 0.00 4.35
2588 3899 2.579787 CTCGACGACATGGGCGAC 60.580 66.667 15.69 9.34 0.00 5.19
2589 3900 3.822192 CCTCGACGACATGGGCGA 61.822 66.667 15.69 8.33 0.00 5.54
2590 3901 3.138930 ATCCTCGACGACATGGGCG 62.139 63.158 8.44 8.44 0.00 6.13
2591 3902 1.592669 CATCCTCGACGACATGGGC 60.593 63.158 0.00 0.00 0.00 5.36
2592 3903 0.031314 CTCATCCTCGACGACATGGG 59.969 60.000 10.68 5.23 0.00 4.00
2593 3904 0.031314 CCTCATCCTCGACGACATGG 59.969 60.000 10.68 4.18 0.00 3.66
2594 3905 0.741326 ACCTCATCCTCGACGACATG 59.259 55.000 0.00 0.00 0.00 3.21
2595 3906 1.135139 CAACCTCATCCTCGACGACAT 59.865 52.381 0.00 0.00 0.00 3.06
2596 3907 0.526211 CAACCTCATCCTCGACGACA 59.474 55.000 0.00 0.00 0.00 4.35
2597 3908 0.802607 GCAACCTCATCCTCGACGAC 60.803 60.000 0.00 0.00 0.00 4.34
2598 3909 1.511305 GCAACCTCATCCTCGACGA 59.489 57.895 0.00 0.00 0.00 4.20
2599 3910 1.519455 GGCAACCTCATCCTCGACG 60.519 63.158 0.00 0.00 0.00 5.12
2600 3911 1.519455 CGGCAACCTCATCCTCGAC 60.519 63.158 0.00 0.00 0.00 4.20
2601 3912 1.667154 CTCGGCAACCTCATCCTCGA 61.667 60.000 0.00 0.00 0.00 4.04
2602 3913 1.227089 CTCGGCAACCTCATCCTCG 60.227 63.158 0.00 0.00 0.00 4.63
2603 3914 1.144936 CCTCGGCAACCTCATCCTC 59.855 63.158 0.00 0.00 0.00 3.71
2604 3915 1.613630 ACCTCGGCAACCTCATCCT 60.614 57.895 0.00 0.00 0.00 3.24
2605 3916 1.153349 GACCTCGGCAACCTCATCC 60.153 63.158 0.00 0.00 0.00 3.51
2606 3917 1.519455 CGACCTCGGCAACCTCATC 60.519 63.158 0.00 0.00 35.37 2.92
2607 3918 2.579201 CGACCTCGGCAACCTCAT 59.421 61.111 0.00 0.00 35.37 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.