Multiple sequence alignment - TraesCS4A01G306400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G306400 chr4A 100.000 4483 0 0 1 4483 601045648 601041166 0.000000e+00 8279.0
1 TraesCS4A01G306400 chr4B 88.594 1622 134 22 2304 3894 5459428 5457827 0.000000e+00 1923.0
2 TraesCS4A01G306400 chr4B 88.224 535 31 16 764 1290 5460845 5460335 1.070000e-170 610.0
3 TraesCS4A01G306400 chr4B 88.938 452 25 7 1157 1598 5460345 5459909 6.600000e-148 534.0
4 TraesCS4A01G306400 chr4B 83.716 522 41 15 4005 4483 5457565 5457045 1.900000e-123 453.0
5 TraesCS4A01G306400 chr4B 84.375 416 52 10 2 409 5461736 5461326 3.250000e-106 396.0
6 TraesCS4A01G306400 chr4B 85.531 311 38 4 1812 2121 106831871 106832175 7.240000e-83 318.0
7 TraesCS4A01G306400 chr4B 90.991 222 16 1 1892 2113 5459709 5459492 3.390000e-76 296.0
8 TraesCS4A01G306400 chr4B 88.571 140 7 3 1157 1296 5460402 5460272 1.290000e-35 161.0
9 TraesCS4A01G306400 chr4B 97.561 82 0 1 788 867 9357828 9357909 6.050000e-29 139.0
10 TraesCS4A01G306400 chr4B 95.294 85 3 1 784 868 5465159 5465076 2.810000e-27 134.0
11 TraesCS4A01G306400 chr4B 90.541 74 4 1 1163 1236 5460288 5460218 1.330000e-15 95.3
12 TraesCS4A01G306400 chr4D 90.147 1492 90 21 2460 3901 3597473 3598957 0.000000e+00 1888.0
13 TraesCS4A01G306400 chr4D 87.639 987 71 23 1163 2117 3596274 3597241 0.000000e+00 1099.0
14 TraesCS4A01G306400 chr4D 83.846 650 52 28 665 1295 3595674 3596289 1.810000e-158 569.0
15 TraesCS4A01G306400 chr4D 83.301 521 40 14 4002 4483 3599168 3599680 1.910000e-118 436.0
16 TraesCS4A01G306400 chr4D 89.344 244 16 4 2197 2440 3597247 3597480 9.430000e-77 298.0
17 TraesCS4A01G306400 chr5B 83.161 386 45 10 1227 1598 40086122 40085743 7.190000e-88 335.0
18 TraesCS4A01G306400 chr5B 89.683 252 26 0 1861 2112 40085592 40085341 5.590000e-84 322.0
19 TraesCS4A01G306400 chr5B 85.304 313 37 5 1812 2121 498290596 498290902 9.360000e-82 315.0
20 TraesCS4A01G306400 chr5B 98.765 81 0 1 788 867 550214584 550214504 4.670000e-30 143.0
21 TraesCS4A01G306400 chr5B 91.803 61 5 0 1448 1508 396488095 396488035 7.990000e-13 86.1
22 TraesCS4A01G306400 chr7B 90.984 244 22 0 1869 2112 686192064 686192307 3.340000e-86 329.0
23 TraesCS4A01G306400 chr3A 85.852 311 37 4 1812 2121 708377672 708377976 1.560000e-84 324.0
24 TraesCS4A01G306400 chr3A 91.803 61 5 0 1448 1508 265255157 265255097 7.990000e-13 86.1
25 TraesCS4A01G306400 chr6A 85.531 311 38 4 1812 2121 12336977 12337281 7.240000e-83 318.0
26 TraesCS4A01G306400 chr1B 84.571 175 26 1 1947 2121 614938526 614938353 5.960000e-39 172.0
27 TraesCS4A01G306400 chr5A 96.591 88 2 1 782 868 326659601 326659688 1.300000e-30 145.0
28 TraesCS4A01G306400 chr5A 98.765 81 0 1 788 867 569525421 569525341 4.670000e-30 143.0
29 TraesCS4A01G306400 chr5A 97.531 81 0 1 789 867 329830150 329830070 2.170000e-28 137.0
30 TraesCS4A01G306400 chr5D 98.765 81 0 1 788 867 450201558 450201478 4.670000e-30 143.0
31 TraesCS4A01G306400 chr6D 96.923 65 2 0 1316 1380 389639554 389639490 4.740000e-20 110.0
32 TraesCS4A01G306400 chr6D 91.429 70 6 0 1439 1508 389639494 389639425 3.690000e-16 97.1
33 TraesCS4A01G306400 chr3B 85.057 87 11 2 3674 3759 42917335 42917250 2.220000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G306400 chr4A 601041166 601045648 4482 True 8279.000000 8279 100.000000 1 4483 1 chr4A.!!$R1 4482
1 TraesCS4A01G306400 chr4B 5457045 5465159 8114 True 511.366667 1923 88.804889 2 4483 9 chr4B.!!$R1 4481
2 TraesCS4A01G306400 chr4D 3595674 3599680 4006 False 858.000000 1888 86.855400 665 4483 5 chr4D.!!$F1 3818
3 TraesCS4A01G306400 chr5B 40085341 40086122 781 True 328.500000 335 86.422000 1227 2112 2 chr5B.!!$R3 885

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
268 3698 0.106318 AATGGATGGAGGGCAGAAGC 60.106 55.0 0.0 0.0 41.10 3.86 F
555 3985 0.107654 GAGGTGGGAGGAAACGATGG 60.108 60.0 0.0 0.0 0.00 3.51 F
565 3995 0.108804 GAAACGATGGAGGCGACTGA 60.109 55.0 0.0 0.0 44.43 3.41 F
1883 5656 0.243365 GCGAACCCATCAAATGCACA 59.757 50.0 0.0 0.0 0.00 4.57 F
2248 6021 0.249868 CTCAGTTGTGCCCGTCAAGA 60.250 55.0 0.0 0.0 0.00 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2057 5830 0.107831 CCACAAACTCGGGGAACTCA 59.892 55.00 0.00 0.0 0.00 3.41 R
2446 6220 2.828520 GCTCTCGGATCCCAGATTCATA 59.171 50.00 9.73 0.0 0.00 2.15 R
2492 6266 5.651172 TGATTGCGTCTAAATCCAATACG 57.349 39.13 0.00 0.0 33.85 3.06 R
3357 7178 0.669318 GCTGACGATGTTTGGGACGA 60.669 55.00 0.00 0.0 0.00 4.20 R
4152 8139 0.247460 CAGTCTGGACTTGATCGGCA 59.753 55.00 0.00 0.0 40.20 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 3455 3.408251 GCCTATCCTATGGCCCTCT 57.592 57.895 0.00 0.00 43.11 3.69
37 3461 1.213296 TCCTATGGCCCTCTTGTTCC 58.787 55.000 0.00 0.00 0.00 3.62
42 3466 1.676967 GGCCCTCTTGTTCCTGCAG 60.677 63.158 6.78 6.78 0.00 4.41
54 3478 4.507710 TGTTCCTGCAGATGTTAAGCTAG 58.492 43.478 17.39 0.00 0.00 3.42
56 3480 5.186992 TGTTCCTGCAGATGTTAAGCTAGTA 59.813 40.000 17.39 0.00 0.00 1.82
57 3481 5.521906 TCCTGCAGATGTTAAGCTAGTAG 57.478 43.478 17.39 0.00 0.00 2.57
58 3482 4.956700 TCCTGCAGATGTTAAGCTAGTAGT 59.043 41.667 17.39 0.00 0.00 2.73
59 3483 6.127101 TCCTGCAGATGTTAAGCTAGTAGTA 58.873 40.000 17.39 0.00 0.00 1.82
60 3484 6.039493 TCCTGCAGATGTTAAGCTAGTAGTAC 59.961 42.308 17.39 0.00 0.00 2.73
96 3520 8.752005 ACAAAATATGAAATCTAGCTAAGCCA 57.248 30.769 0.00 0.00 0.00 4.75
106 3535 1.087501 AGCTAAGCCACTTTAAGCGC 58.912 50.000 0.00 0.00 0.00 5.92
108 3537 1.401905 GCTAAGCCACTTTAAGCGCAT 59.598 47.619 11.47 0.00 0.00 4.73
110 3539 0.447801 AAGCCACTTTAAGCGCATCG 59.552 50.000 11.47 0.00 0.00 3.84
133 3562 2.203437 GGTTGGCGGGTTTGGTCT 60.203 61.111 0.00 0.00 0.00 3.85
134 3563 1.830847 GGTTGGCGGGTTTGGTCTT 60.831 57.895 0.00 0.00 0.00 3.01
137 3566 2.031465 GGCGGGTTTGGTCTTCGA 59.969 61.111 0.00 0.00 0.00 3.71
141 3570 1.803334 CGGGTTTGGTCTTCGATTCA 58.197 50.000 0.00 0.00 0.00 2.57
142 3571 1.463444 CGGGTTTGGTCTTCGATTCAC 59.537 52.381 0.00 0.00 0.00 3.18
143 3572 1.810755 GGGTTTGGTCTTCGATTCACC 59.189 52.381 0.00 0.00 0.00 4.02
144 3573 2.500229 GGTTTGGTCTTCGATTCACCA 58.500 47.619 6.55 6.55 38.48 4.17
145 3574 3.081804 GGTTTGGTCTTCGATTCACCAT 58.918 45.455 10.52 0.00 39.97 3.55
165 3594 2.006805 TGATGGCTCCGATGAGAGAT 57.993 50.000 0.00 0.00 41.42 2.75
169 3598 2.323599 TGGCTCCGATGAGAGATGAAT 58.676 47.619 0.00 0.00 41.42 2.57
172 3601 3.244009 GGCTCCGATGAGAGATGAATTGA 60.244 47.826 0.00 0.00 41.42 2.57
225 3654 1.538849 GGGGTTGCTGACTTTGCTTTG 60.539 52.381 0.00 0.00 0.00 2.77
227 3656 0.848305 GTTGCTGACTTTGCTTTGCG 59.152 50.000 0.00 0.00 0.00 4.85
230 3659 1.123655 GCTGACTTTGCTTTGCGTTC 58.876 50.000 0.00 0.00 0.00 3.95
264 3694 0.396695 AGCAAATGGATGGAGGGCAG 60.397 55.000 0.00 0.00 0.00 4.85
266 3696 1.961435 GCAAATGGATGGAGGGCAGAA 60.961 52.381 0.00 0.00 0.00 3.02
268 3698 0.106318 AATGGATGGAGGGCAGAAGC 60.106 55.000 0.00 0.00 41.10 3.86
270 3700 2.735772 GGATGGAGGGCAGAAGCGA 61.736 63.158 0.00 0.00 43.41 4.93
272 3702 0.179034 GATGGAGGGCAGAAGCGAAT 60.179 55.000 0.00 0.00 43.41 3.34
278 3708 0.678048 GGGCAGAAGCGAATCAAGGT 60.678 55.000 0.00 0.00 43.41 3.50
280 3710 1.131315 GGCAGAAGCGAATCAAGGTTC 59.869 52.381 0.00 0.51 43.92 3.62
292 3722 2.218603 TCAAGGTTCAAAGGCGAGAAC 58.781 47.619 10.05 10.05 42.51 3.01
312 3742 1.674651 CGAGAGGGTGAGGTGTCGA 60.675 63.158 0.00 0.00 31.42 4.20
335 3765 4.740822 ACCGCCATGCCCAAGTCC 62.741 66.667 0.00 0.00 0.00 3.85
338 3768 2.036256 GCCATGCCCAAGTCCAGT 59.964 61.111 0.00 0.00 0.00 4.00
341 3771 0.251297 CCATGCCCAAGTCCAGTGAA 60.251 55.000 0.00 0.00 0.00 3.18
342 3772 1.171308 CATGCCCAAGTCCAGTGAAG 58.829 55.000 0.00 0.00 0.00 3.02
357 3787 3.251972 CAGTGAAGAAAGAAGAGGTTGGC 59.748 47.826 0.00 0.00 0.00 4.52
360 3790 3.136443 TGAAGAAAGAAGAGGTTGGCTGA 59.864 43.478 0.00 0.00 0.00 4.26
364 3794 0.689623 AGAAGAGGTTGGCTGAGTGG 59.310 55.000 0.00 0.00 0.00 4.00
368 3798 0.391793 GAGGTTGGCTGAGTGGCTAC 60.392 60.000 0.00 0.00 43.76 3.58
369 3799 1.741770 GGTTGGCTGAGTGGCTACG 60.742 63.158 0.00 0.00 44.97 3.51
385 3815 0.244178 TACGGTGTAGCGTGCAATCA 59.756 50.000 18.10 0.00 0.00 2.57
388 3818 0.391130 GGTGTAGCGTGCAATCAGGA 60.391 55.000 0.00 0.00 0.00 3.86
399 3829 1.952367 GCAATCAGGAGGGTGGTGAAG 60.952 57.143 0.00 0.00 0.00 3.02
402 3832 2.936032 AGGAGGGTGGTGAAGGGC 60.936 66.667 0.00 0.00 0.00 5.19
403 3833 4.410400 GGAGGGTGGTGAAGGGCG 62.410 72.222 0.00 0.00 0.00 6.13
404 3834 3.319198 GAGGGTGGTGAAGGGCGA 61.319 66.667 0.00 0.00 0.00 5.54
405 3835 3.316573 GAGGGTGGTGAAGGGCGAG 62.317 68.421 0.00 0.00 0.00 5.03
408 3838 3.637273 GTGGTGAAGGGCGAGGGT 61.637 66.667 0.00 0.00 0.00 4.34
411 3841 2.430367 GTGAAGGGCGAGGGTTGT 59.570 61.111 0.00 0.00 0.00 3.32
412 3842 1.966451 GTGAAGGGCGAGGGTTGTG 60.966 63.158 0.00 0.00 0.00 3.33
413 3843 2.359975 GAAGGGCGAGGGTTGTGG 60.360 66.667 0.00 0.00 0.00 4.17
414 3844 4.660938 AAGGGCGAGGGTTGTGGC 62.661 66.667 0.00 0.00 0.00 5.01
419 3849 4.619227 CGAGGGTTGTGGCGGTGT 62.619 66.667 0.00 0.00 0.00 4.16
420 3850 2.978010 GAGGGTTGTGGCGGTGTG 60.978 66.667 0.00 0.00 0.00 3.82
421 3851 3.767630 GAGGGTTGTGGCGGTGTGT 62.768 63.158 0.00 0.00 0.00 3.72
422 3852 3.591835 GGGTTGTGGCGGTGTGTG 61.592 66.667 0.00 0.00 0.00 3.82
423 3853 2.515057 GGTTGTGGCGGTGTGTGA 60.515 61.111 0.00 0.00 0.00 3.58
424 3854 2.542907 GGTTGTGGCGGTGTGTGAG 61.543 63.158 0.00 0.00 0.00 3.51
425 3855 2.899838 TTGTGGCGGTGTGTGAGC 60.900 61.111 0.00 0.00 0.00 4.26
427 3857 3.349006 GTGGCGGTGTGTGAGCAG 61.349 66.667 0.00 0.00 0.00 4.24
428 3858 4.624364 TGGCGGTGTGTGAGCAGG 62.624 66.667 0.00 0.00 0.00 4.85
429 3859 4.314440 GGCGGTGTGTGAGCAGGA 62.314 66.667 0.00 0.00 0.00 3.86
430 3860 2.740055 GCGGTGTGTGAGCAGGAG 60.740 66.667 0.00 0.00 0.00 3.69
431 3861 2.737180 CGGTGTGTGAGCAGGAGT 59.263 61.111 0.00 0.00 0.00 3.85
432 3862 1.069765 CGGTGTGTGAGCAGGAGTT 59.930 57.895 0.00 0.00 0.00 3.01
433 3863 0.317160 CGGTGTGTGAGCAGGAGTTA 59.683 55.000 0.00 0.00 0.00 2.24
434 3864 1.066858 CGGTGTGTGAGCAGGAGTTAT 60.067 52.381 0.00 0.00 0.00 1.89
435 3865 2.165641 CGGTGTGTGAGCAGGAGTTATA 59.834 50.000 0.00 0.00 0.00 0.98
436 3866 3.522553 GGTGTGTGAGCAGGAGTTATAC 58.477 50.000 0.00 0.00 0.00 1.47
437 3867 3.522553 GTGTGTGAGCAGGAGTTATACC 58.477 50.000 0.00 0.00 0.00 2.73
438 3868 3.195825 GTGTGTGAGCAGGAGTTATACCT 59.804 47.826 0.00 0.00 38.40 3.08
439 3869 4.401519 GTGTGTGAGCAGGAGTTATACCTA 59.598 45.833 0.00 0.00 35.84 3.08
440 3870 4.645136 TGTGTGAGCAGGAGTTATACCTAG 59.355 45.833 0.00 0.00 35.84 3.02
441 3871 3.637229 TGTGAGCAGGAGTTATACCTAGC 59.363 47.826 0.00 0.00 35.84 3.42
442 3872 3.006003 GTGAGCAGGAGTTATACCTAGCC 59.994 52.174 0.00 0.00 35.84 3.93
443 3873 3.231818 GAGCAGGAGTTATACCTAGCCA 58.768 50.000 0.00 0.00 35.84 4.75
444 3874 3.835395 GAGCAGGAGTTATACCTAGCCAT 59.165 47.826 0.00 0.00 35.84 4.40
446 3876 4.040952 AGCAGGAGTTATACCTAGCCATTG 59.959 45.833 0.00 0.00 35.84 2.82
448 3878 5.280215 GCAGGAGTTATACCTAGCCATTGAT 60.280 44.000 0.00 0.00 35.84 2.57
449 3879 6.402222 CAGGAGTTATACCTAGCCATTGATC 58.598 44.000 0.00 0.00 35.84 2.92
451 3881 5.407407 AGTTATACCTAGCCATTGATCGG 57.593 43.478 0.00 0.00 0.00 4.18
453 3883 2.391926 TACCTAGCCATTGATCGGGA 57.608 50.000 2.34 0.00 0.00 5.14
455 3885 2.057922 ACCTAGCCATTGATCGGGAAT 58.942 47.619 2.34 0.00 0.00 3.01
456 3886 2.039084 ACCTAGCCATTGATCGGGAATC 59.961 50.000 2.34 0.00 34.72 2.52
457 3887 2.304180 CCTAGCCATTGATCGGGAATCT 59.696 50.000 2.34 0.00 35.24 2.40
459 3889 4.020218 CCTAGCCATTGATCGGGAATCTTA 60.020 45.833 2.34 0.00 35.24 2.10
460 3890 3.744660 AGCCATTGATCGGGAATCTTAC 58.255 45.455 2.34 0.00 35.24 2.34
461 3891 3.136443 AGCCATTGATCGGGAATCTTACA 59.864 43.478 2.34 0.00 35.24 2.41
462 3892 4.074970 GCCATTGATCGGGAATCTTACAT 58.925 43.478 2.34 0.00 35.24 2.29
464 3894 5.010012 GCCATTGATCGGGAATCTTACATTT 59.990 40.000 2.34 0.00 35.24 2.32
466 3896 6.262944 CCATTGATCGGGAATCTTACATTTGA 59.737 38.462 0.00 0.00 35.24 2.69
467 3897 7.040201 CCATTGATCGGGAATCTTACATTTGAT 60.040 37.037 0.00 0.00 35.24 2.57
469 3899 7.880160 TGATCGGGAATCTTACATTTGATTT 57.120 32.000 0.00 0.00 35.24 2.17
470 3900 7.706159 TGATCGGGAATCTTACATTTGATTTG 58.294 34.615 0.00 0.00 35.24 2.32
471 3901 6.449635 TCGGGAATCTTACATTTGATTTGG 57.550 37.500 0.00 0.00 33.60 3.28
472 3902 5.949354 TCGGGAATCTTACATTTGATTTGGT 59.051 36.000 0.00 0.00 33.60 3.67
473 3903 7.113437 TCGGGAATCTTACATTTGATTTGGTA 58.887 34.615 0.00 0.00 33.60 3.25
474 3904 7.777910 TCGGGAATCTTACATTTGATTTGGTAT 59.222 33.333 0.00 0.00 33.60 2.73
475 3905 9.062524 CGGGAATCTTACATTTGATTTGGTATA 57.937 33.333 0.00 0.00 33.60 1.47
490 3920 8.717821 TGATTTGGTATAGAGAAACTGAAAACG 58.282 33.333 0.00 0.00 0.00 3.60
491 3921 8.842358 ATTTGGTATAGAGAAACTGAAAACGA 57.158 30.769 0.00 0.00 0.00 3.85
492 3922 7.884816 TTGGTATAGAGAAACTGAAAACGAG 57.115 36.000 0.00 0.00 0.00 4.18
493 3923 7.223260 TGGTATAGAGAAACTGAAAACGAGA 57.777 36.000 0.00 0.00 0.00 4.04
494 3924 7.313646 TGGTATAGAGAAACTGAAAACGAGAG 58.686 38.462 0.00 0.00 0.00 3.20
496 3926 4.939052 AGAGAAACTGAAAACGAGAGGA 57.061 40.909 0.00 0.00 0.00 3.71
497 3927 4.877282 AGAGAAACTGAAAACGAGAGGAG 58.123 43.478 0.00 0.00 0.00 3.69
498 3928 4.585162 AGAGAAACTGAAAACGAGAGGAGA 59.415 41.667 0.00 0.00 0.00 3.71
499 3929 4.877282 AGAAACTGAAAACGAGAGGAGAG 58.123 43.478 0.00 0.00 0.00 3.20
500 3930 3.669251 AACTGAAAACGAGAGGAGAGG 57.331 47.619 0.00 0.00 0.00 3.69
502 3932 3.231818 ACTGAAAACGAGAGGAGAGGAA 58.768 45.455 0.00 0.00 0.00 3.36
503 3933 3.257127 ACTGAAAACGAGAGGAGAGGAAG 59.743 47.826 0.00 0.00 0.00 3.46
504 3934 3.231818 TGAAAACGAGAGGAGAGGAAGT 58.768 45.455 0.00 0.00 0.00 3.01
505 3935 3.641906 TGAAAACGAGAGGAGAGGAAGTT 59.358 43.478 0.00 0.00 0.00 2.66
507 3937 3.945981 AACGAGAGGAGAGGAAGTTTC 57.054 47.619 0.00 0.00 0.00 2.78
522 3952 5.523369 GGAAGTTTCCTCTTGTTTCATGTG 58.477 41.667 3.63 0.00 44.11 3.21
523 3953 4.574599 AGTTTCCTCTTGTTTCATGTGC 57.425 40.909 0.00 0.00 0.00 4.57
524 3954 3.953612 AGTTTCCTCTTGTTTCATGTGCA 59.046 39.130 0.00 0.00 0.00 4.57
525 3955 3.988379 TTCCTCTTGTTTCATGTGCAC 57.012 42.857 10.75 10.75 0.00 4.57
528 3958 2.096069 CCTCTTGTTTCATGTGCACGAG 60.096 50.000 13.13 7.20 0.00 4.18
529 3959 1.264020 TCTTGTTTCATGTGCACGAGC 59.736 47.619 13.13 0.00 42.57 5.03
530 3960 1.265095 CTTGTTTCATGTGCACGAGCT 59.735 47.619 13.13 0.00 42.74 4.09
531 3961 2.162319 TGTTTCATGTGCACGAGCTA 57.838 45.000 13.13 0.00 42.74 3.32
532 3962 2.068519 TGTTTCATGTGCACGAGCTAG 58.931 47.619 13.13 0.00 42.74 3.42
533 3963 1.394917 GTTTCATGTGCACGAGCTAGG 59.605 52.381 13.13 0.00 42.74 3.02
534 3964 0.108186 TTCATGTGCACGAGCTAGGG 60.108 55.000 13.13 0.00 42.74 3.53
535 3965 0.970427 TCATGTGCACGAGCTAGGGA 60.970 55.000 13.13 0.00 42.74 4.20
536 3966 0.529337 CATGTGCACGAGCTAGGGAG 60.529 60.000 13.13 0.00 42.74 4.30
537 3967 0.684479 ATGTGCACGAGCTAGGGAGA 60.684 55.000 13.13 0.00 42.74 3.71
538 3968 1.315981 TGTGCACGAGCTAGGGAGAG 61.316 60.000 13.13 0.00 42.74 3.20
539 3969 1.754621 TGCACGAGCTAGGGAGAGG 60.755 63.158 0.00 0.00 42.74 3.69
541 3971 2.010582 GCACGAGCTAGGGAGAGGTG 62.011 65.000 0.00 0.00 37.91 4.00
543 3973 1.830408 CGAGCTAGGGAGAGGTGGG 60.830 68.421 0.00 0.00 0.00 4.61
545 3975 0.469144 GAGCTAGGGAGAGGTGGGAG 60.469 65.000 0.00 0.00 0.00 4.30
546 3976 1.458588 GCTAGGGAGAGGTGGGAGG 60.459 68.421 0.00 0.00 0.00 4.30
547 3977 1.950748 GCTAGGGAGAGGTGGGAGGA 61.951 65.000 0.00 0.00 0.00 3.71
549 3979 1.008449 CTAGGGAGAGGTGGGAGGAAA 59.992 57.143 0.00 0.00 0.00 3.13
551 3981 1.597461 GGAGAGGTGGGAGGAAACG 59.403 63.158 0.00 0.00 0.00 3.60
552 3982 0.903454 GGAGAGGTGGGAGGAAACGA 60.903 60.000 0.00 0.00 0.00 3.85
553 3983 1.196012 GAGAGGTGGGAGGAAACGAT 58.804 55.000 0.00 0.00 0.00 3.73
554 3984 0.905357 AGAGGTGGGAGGAAACGATG 59.095 55.000 0.00 0.00 0.00 3.84
555 3985 0.107654 GAGGTGGGAGGAAACGATGG 60.108 60.000 0.00 0.00 0.00 3.51
556 3986 0.546747 AGGTGGGAGGAAACGATGGA 60.547 55.000 0.00 0.00 0.00 3.41
558 3988 0.107654 GTGGGAGGAAACGATGGAGG 60.108 60.000 0.00 0.00 0.00 4.30
559 3989 1.153147 GGGAGGAAACGATGGAGGC 60.153 63.158 0.00 0.00 0.00 4.70
560 3990 1.521681 GGAGGAAACGATGGAGGCG 60.522 63.158 0.00 0.00 0.00 5.52
562 3992 0.806492 GAGGAAACGATGGAGGCGAC 60.806 60.000 0.00 0.00 0.00 5.19
564 3994 1.084370 GGAAACGATGGAGGCGACTG 61.084 60.000 0.00 0.00 44.43 3.51
565 3995 0.108804 GAAACGATGGAGGCGACTGA 60.109 55.000 0.00 0.00 44.43 3.41
566 3996 0.320374 AAACGATGGAGGCGACTGAA 59.680 50.000 0.00 0.00 44.43 3.02
567 3997 0.537188 AACGATGGAGGCGACTGAAT 59.463 50.000 0.00 0.00 44.43 2.57
568 3998 1.399714 ACGATGGAGGCGACTGAATA 58.600 50.000 0.00 0.00 44.43 1.75
570 4000 1.772182 GATGGAGGCGACTGAATACG 58.228 55.000 0.00 0.00 44.43 3.06
571 4001 1.067212 GATGGAGGCGACTGAATACGT 59.933 52.381 0.00 0.00 44.43 3.57
572 4002 1.753930 TGGAGGCGACTGAATACGTA 58.246 50.000 0.00 0.00 44.43 3.57
573 4003 1.402968 TGGAGGCGACTGAATACGTAC 59.597 52.381 0.00 0.00 44.43 3.67
574 4004 1.268948 GGAGGCGACTGAATACGTACC 60.269 57.143 0.00 0.00 44.43 3.34
576 4006 1.133790 AGGCGACTGAATACGTACCAC 59.866 52.381 0.00 0.00 41.13 4.16
577 4007 1.553308 GCGACTGAATACGTACCACC 58.447 55.000 0.00 0.00 0.00 4.61
578 4008 1.133790 GCGACTGAATACGTACCACCT 59.866 52.381 0.00 0.00 0.00 4.00
579 4009 2.355756 GCGACTGAATACGTACCACCTA 59.644 50.000 0.00 0.00 0.00 3.08
580 4010 3.547613 GCGACTGAATACGTACCACCTAG 60.548 52.174 0.00 0.00 0.00 3.02
581 4011 3.873361 CGACTGAATACGTACCACCTAGA 59.127 47.826 0.00 0.00 0.00 2.43
582 4012 4.514441 CGACTGAATACGTACCACCTAGAT 59.486 45.833 0.00 0.00 0.00 1.98
583 4013 5.698089 CGACTGAATACGTACCACCTAGATA 59.302 44.000 0.00 0.00 0.00 1.98
584 4014 6.370994 CGACTGAATACGTACCACCTAGATAT 59.629 42.308 0.00 0.00 0.00 1.63
585 4015 7.412781 CGACTGAATACGTACCACCTAGATATC 60.413 44.444 0.00 0.00 0.00 1.63
587 4017 7.174599 ACTGAATACGTACCACCTAGATATCAC 59.825 40.741 5.32 0.00 0.00 3.06
588 4018 6.148315 TGAATACGTACCACCTAGATATCACG 59.852 42.308 5.32 5.99 0.00 4.35
591 4021 3.188048 CGTACCACCTAGATATCACGACC 59.812 52.174 5.32 0.00 0.00 4.79
592 4022 2.228059 ACCACCTAGATATCACGACCG 58.772 52.381 5.32 0.00 0.00 4.79
593 4023 1.068472 CCACCTAGATATCACGACCGC 60.068 57.143 5.32 0.00 0.00 5.68
594 4024 1.607148 CACCTAGATATCACGACCGCA 59.393 52.381 5.32 0.00 0.00 5.69
595 4025 2.034179 CACCTAGATATCACGACCGCAA 59.966 50.000 5.32 0.00 0.00 4.85
598 4028 2.961526 AGATATCACGACCGCAAACT 57.038 45.000 5.32 0.00 0.00 2.66
599 4029 2.810650 AGATATCACGACCGCAAACTC 58.189 47.619 5.32 0.00 0.00 3.01
610 4071 2.158957 ACCGCAAACTCCGATCATGTAT 60.159 45.455 0.00 0.00 0.00 2.29
613 4074 4.690748 CCGCAAACTCCGATCATGTATAAT 59.309 41.667 0.00 0.00 0.00 1.28
614 4075 5.163953 CCGCAAACTCCGATCATGTATAATC 60.164 44.000 0.00 0.00 0.00 1.75
618 4079 8.935844 GCAAACTCCGATCATGTATAATCAATA 58.064 33.333 0.00 0.00 0.00 1.90
650 4175 6.027131 TGAAAATAGGATCGCATTTTTCACG 58.973 36.000 13.86 0.00 39.84 4.35
651 4176 3.609103 ATAGGATCGCATTTTTCACGC 57.391 42.857 0.00 0.00 0.00 5.34
652 4177 1.164411 AGGATCGCATTTTTCACGCA 58.836 45.000 0.00 0.00 0.00 5.24
653 4178 1.745087 AGGATCGCATTTTTCACGCAT 59.255 42.857 0.00 0.00 0.00 4.73
654 4179 2.164219 AGGATCGCATTTTTCACGCATT 59.836 40.909 0.00 0.00 0.00 3.56
655 4180 2.923020 GGATCGCATTTTTCACGCATTT 59.077 40.909 0.00 0.00 0.00 2.32
656 4181 4.101942 GGATCGCATTTTTCACGCATTTA 58.898 39.130 0.00 0.00 0.00 1.40
657 4182 4.739716 GGATCGCATTTTTCACGCATTTAT 59.260 37.500 0.00 0.00 0.00 1.40
658 4183 5.231991 GGATCGCATTTTTCACGCATTTATT 59.768 36.000 0.00 0.00 0.00 1.40
659 4184 5.433081 TCGCATTTTTCACGCATTTATTG 57.567 34.783 0.00 0.00 0.00 1.90
660 4185 4.325741 TCGCATTTTTCACGCATTTATTGG 59.674 37.500 0.00 0.00 0.00 3.16
661 4186 4.333615 GCATTTTTCACGCATTTATTGGC 58.666 39.130 0.00 0.00 0.00 4.52
662 4187 4.142945 GCATTTTTCACGCATTTATTGGCA 60.143 37.500 0.00 0.00 0.00 4.92
663 4188 5.616424 GCATTTTTCACGCATTTATTGGCAA 60.616 36.000 0.68 0.68 0.00 4.52
664 4189 5.588568 TTTTTCACGCATTTATTGGCAAG 57.411 34.783 5.96 0.00 0.00 4.01
665 4190 3.932545 TTCACGCATTTATTGGCAAGT 57.067 38.095 5.96 0.00 0.00 3.16
666 4191 3.932545 TCACGCATTTATTGGCAAGTT 57.067 38.095 5.96 0.00 0.00 2.66
667 4192 4.250116 TCACGCATTTATTGGCAAGTTT 57.750 36.364 5.96 0.00 0.00 2.66
668 4193 4.233789 TCACGCATTTATTGGCAAGTTTC 58.766 39.130 5.96 0.00 0.00 2.78
669 4194 3.367630 CACGCATTTATTGGCAAGTTTCC 59.632 43.478 5.96 0.00 0.00 3.13
670 4195 3.006323 ACGCATTTATTGGCAAGTTTCCA 59.994 39.130 5.96 0.00 0.00 3.53
671 4196 4.183101 CGCATTTATTGGCAAGTTTCCAT 58.817 39.130 5.96 0.00 32.92 3.41
672 4197 4.630940 CGCATTTATTGGCAAGTTTCCATT 59.369 37.500 5.96 0.00 32.92 3.16
673 4198 5.122082 CGCATTTATTGGCAAGTTTCCATTT 59.878 36.000 5.96 0.00 32.92 2.32
674 4199 6.316319 GCATTTATTGGCAAGTTTCCATTTG 58.684 36.000 5.96 0.00 32.92 2.32
723 4270 4.276678 TGCAGAGTTTTTCTTGGTGATCAG 59.723 41.667 0.00 0.00 32.41 2.90
724 4271 4.320788 GCAGAGTTTTTCTTGGTGATCAGG 60.321 45.833 0.00 0.00 32.41 3.86
726 4273 4.141158 AGAGTTTTTCTTGGTGATCAGGGT 60.141 41.667 0.00 0.00 29.61 4.34
727 4274 3.891366 AGTTTTTCTTGGTGATCAGGGTG 59.109 43.478 0.00 0.00 0.00 4.61
728 4275 3.593442 TTTTCTTGGTGATCAGGGTGT 57.407 42.857 0.00 0.00 0.00 4.16
729 4276 3.593442 TTTCTTGGTGATCAGGGTGTT 57.407 42.857 0.00 0.00 0.00 3.32
730 4277 3.593442 TTCTTGGTGATCAGGGTGTTT 57.407 42.857 0.00 0.00 0.00 2.83
734 4281 1.202879 TGGTGATCAGGGTGTTTGGTC 60.203 52.381 0.00 0.00 0.00 4.02
736 4283 0.762418 TGATCAGGGTGTTTGGTCGT 59.238 50.000 0.00 0.00 0.00 4.34
737 4284 1.142060 TGATCAGGGTGTTTGGTCGTT 59.858 47.619 0.00 0.00 0.00 3.85
740 4287 2.841215 TCAGGGTGTTTGGTCGTTAAG 58.159 47.619 0.00 0.00 0.00 1.85
743 4290 3.628487 CAGGGTGTTTGGTCGTTAAGAAA 59.372 43.478 0.00 0.00 0.00 2.52
744 4291 4.096682 CAGGGTGTTTGGTCGTTAAGAAAA 59.903 41.667 0.00 0.00 0.00 2.29
745 4292 4.096833 AGGGTGTTTGGTCGTTAAGAAAAC 59.903 41.667 0.00 0.00 32.78 2.43
759 4318 6.532657 CGTTAAGAAAACGATAGGGCTAAGAA 59.467 38.462 4.34 0.00 45.64 2.52
760 4319 7.063780 CGTTAAGAAAACGATAGGGCTAAGAAA 59.936 37.037 4.34 0.00 45.64 2.52
761 4320 8.724229 GTTAAGAAAACGATAGGGCTAAGAAAA 58.276 33.333 0.00 0.00 43.77 2.29
762 4321 6.738832 AGAAAACGATAGGGCTAAGAAAAC 57.261 37.500 0.00 0.00 43.77 2.43
776 4335 6.534079 GGCTAAGAAAACTAGCATCGTTAAGA 59.466 38.462 4.40 0.00 43.01 2.10
783 4342 3.612860 ACTAGCATCGTTAAGAAAGCACG 59.387 43.478 0.00 0.00 36.71 5.34
888 4449 1.550327 CCTTCCTTCTGGGCCTTTTC 58.450 55.000 4.53 0.00 34.39 2.29
949 4510 4.431131 CCCACGAGGCCCAGCAAT 62.431 66.667 0.00 0.00 0.00 3.56
961 4522 0.596083 CCAGCAATACCTCGAGCTCG 60.596 60.000 30.03 30.03 41.45 5.03
972 4533 0.738975 TCGAGCTCGACCACATAAGG 59.261 55.000 33.84 2.43 44.22 2.69
1053 4616 1.290732 CCCTCCTCCTTCCTCTTCTCT 59.709 57.143 0.00 0.00 0.00 3.10
1077 4640 2.432628 GTTCGTCTCACCGGCCAG 60.433 66.667 0.00 0.00 0.00 4.85
1247 4819 3.926003 GCCAAGAAGCCTAAGCCC 58.074 61.111 0.00 0.00 41.25 5.19
1433 5170 3.090532 GGAGGGGCCGAGGTGATT 61.091 66.667 0.00 0.00 0.00 2.57
1436 5173 2.438434 GGGGCCGAGGTGATTGTG 60.438 66.667 0.00 0.00 0.00 3.33
1573 5317 1.648467 GGTTGATTCCTGCGAGTGGC 61.648 60.000 0.00 0.00 43.96 5.01
1597 5341 5.307204 CATGATTGATTTGGTTTGTTGGGT 58.693 37.500 0.00 0.00 0.00 4.51
1598 5342 4.701765 TGATTGATTTGGTTTGTTGGGTG 58.298 39.130 0.00 0.00 0.00 4.61
1599 5343 3.550437 TTGATTTGGTTTGTTGGGTGG 57.450 42.857 0.00 0.00 0.00 4.61
1600 5344 2.752030 TGATTTGGTTTGTTGGGTGGA 58.248 42.857 0.00 0.00 0.00 4.02
1601 5345 3.312890 TGATTTGGTTTGTTGGGTGGAT 58.687 40.909 0.00 0.00 0.00 3.41
1602 5346 3.323403 TGATTTGGTTTGTTGGGTGGATC 59.677 43.478 0.00 0.00 0.00 3.36
1603 5347 1.710816 TTGGTTTGTTGGGTGGATCC 58.289 50.000 4.20 4.20 0.00 3.36
1604 5348 0.538516 TGGTTTGTTGGGTGGATCCG 60.539 55.000 7.39 0.00 37.00 4.18
1605 5349 1.248101 GGTTTGTTGGGTGGATCCGG 61.248 60.000 7.39 0.00 37.00 5.14
1606 5350 1.075836 TTTGTTGGGTGGATCCGGG 59.924 57.895 7.39 0.00 37.00 5.73
1624 5368 2.156098 GGGTGACGAATTTGTTGCCTA 58.844 47.619 15.12 0.00 0.00 3.93
1649 5393 1.135960 AATGTTTGGGTGGTTTGGGG 58.864 50.000 0.00 0.00 0.00 4.96
1669 5413 3.288092 GGGGAGAAATCAGCGGTAAATT 58.712 45.455 0.00 0.00 0.00 1.82
1675 5419 6.436843 AGAAATCAGCGGTAAATTACTTGG 57.563 37.500 2.96 0.00 0.00 3.61
1677 5421 3.060736 TCAGCGGTAAATTACTTGGCA 57.939 42.857 13.47 0.00 0.00 4.92
1682 5426 4.102649 GCGGTAAATTACTTGGCATTGAC 58.897 43.478 2.96 0.00 0.00 3.18
1683 5427 4.380023 GCGGTAAATTACTTGGCATTGACA 60.380 41.667 2.96 0.00 0.00 3.58
1684 5428 5.678616 GCGGTAAATTACTTGGCATTGACAT 60.679 40.000 2.96 0.00 0.00 3.06
1689 5437 9.169468 GTAAATTACTTGGCATTGACATATTCG 57.831 33.333 0.00 0.00 0.00 3.34
1701 5449 7.576236 CATTGACATATTCGATTTACTGGGTC 58.424 38.462 0.00 0.00 0.00 4.46
1705 5454 6.522054 ACATATTCGATTTACTGGGTCGATT 58.478 36.000 0.00 0.00 43.03 3.34
1759 5510 1.219213 TGGGTGTTTTGGGGAAGACAT 59.781 47.619 0.00 0.00 0.00 3.06
1763 5514 2.029918 GTGTTTTGGGGAAGACATCAGC 60.030 50.000 0.00 0.00 0.00 4.26
1791 5551 7.539034 AGTTAATTTCTTGGCATACTGGTTT 57.461 32.000 0.00 0.00 0.00 3.27
1841 5601 1.135286 GCTAATTGCTCTGTTGTGGGC 60.135 52.381 0.00 0.00 38.95 5.36
1882 5655 0.527565 AGCGAACCCATCAAATGCAC 59.472 50.000 0.00 0.00 0.00 4.57
1883 5656 0.243365 GCGAACCCATCAAATGCACA 59.757 50.000 0.00 0.00 0.00 4.57
1894 5667 4.508461 TCAAATGCACAAGGAACTGATG 57.492 40.909 0.00 0.00 40.86 3.07
1900 5673 2.350772 GCACAAGGAACTGATGGTTTCG 60.351 50.000 0.00 0.00 40.86 3.46
1903 5676 0.673644 AGGAACTGATGGTTTCGGCG 60.674 55.000 0.00 0.00 38.42 6.46
1904 5677 1.134694 GAACTGATGGTTTCGGCGC 59.865 57.895 0.00 0.00 38.41 6.53
1906 5679 1.169661 AACTGATGGTTTCGGCGCAA 61.170 50.000 10.83 0.00 33.90 4.85
1967 5740 5.121811 GGATGATGATAGTGATATGGGTGC 58.878 45.833 0.00 0.00 0.00 5.01
1969 5742 3.055891 TGATGATAGTGATATGGGTGCGG 60.056 47.826 0.00 0.00 0.00 5.69
2057 5830 0.461548 TCAAGGCGCTCGATGAGATT 59.538 50.000 7.64 0.00 0.00 2.40
2093 5866 2.686835 GAGCCCCTGAGGACTGCT 60.687 66.667 0.00 4.78 38.24 4.24
2113 5886 3.545703 CTCTGGAAGGTCAGTGTTGTTT 58.454 45.455 0.00 0.00 36.25 2.83
2117 5890 5.104693 TCTGGAAGGTCAGTGTTGTTTTCTA 60.105 40.000 0.00 0.00 36.25 2.10
2120 5893 5.589050 GGAAGGTCAGTGTTGTTTTCTACTT 59.411 40.000 0.00 0.00 0.00 2.24
2122 5895 5.123936 AGGTCAGTGTTGTTTTCTACTTCC 58.876 41.667 0.00 0.00 0.00 3.46
2123 5896 4.275196 GGTCAGTGTTGTTTTCTACTTCCC 59.725 45.833 0.00 0.00 0.00 3.97
2124 5897 4.275196 GTCAGTGTTGTTTTCTACTTCCCC 59.725 45.833 0.00 0.00 0.00 4.81
2125 5898 4.165372 TCAGTGTTGTTTTCTACTTCCCCT 59.835 41.667 0.00 0.00 0.00 4.79
2126 5899 4.275936 CAGTGTTGTTTTCTACTTCCCCTG 59.724 45.833 0.00 0.00 0.00 4.45
2127 5900 4.079958 AGTGTTGTTTTCTACTTCCCCTGT 60.080 41.667 0.00 0.00 0.00 4.00
2128 5901 4.643334 GTGTTGTTTTCTACTTCCCCTGTT 59.357 41.667 0.00 0.00 0.00 3.16
2129 5902 4.885325 TGTTGTTTTCTACTTCCCCTGTTC 59.115 41.667 0.00 0.00 0.00 3.18
2130 5903 4.094830 TGTTTTCTACTTCCCCTGTTCC 57.905 45.455 0.00 0.00 0.00 3.62
2131 5904 3.460340 TGTTTTCTACTTCCCCTGTTCCA 59.540 43.478 0.00 0.00 0.00 3.53
2132 5905 4.079672 TGTTTTCTACTTCCCCTGTTCCAA 60.080 41.667 0.00 0.00 0.00 3.53
2133 5906 5.077564 GTTTTCTACTTCCCCTGTTCCAAT 58.922 41.667 0.00 0.00 0.00 3.16
2134 5907 5.333566 TTTCTACTTCCCCTGTTCCAATT 57.666 39.130 0.00 0.00 0.00 2.32
2135 5908 6.457159 TTTCTACTTCCCCTGTTCCAATTA 57.543 37.500 0.00 0.00 0.00 1.40
2136 5909 6.652205 TTCTACTTCCCCTGTTCCAATTAT 57.348 37.500 0.00 0.00 0.00 1.28
2137 5910 7.758820 TTCTACTTCCCCTGTTCCAATTATA 57.241 36.000 0.00 0.00 0.00 0.98
2138 5911 7.758820 TCTACTTCCCCTGTTCCAATTATAA 57.241 36.000 0.00 0.00 0.00 0.98
2139 5912 7.802117 TCTACTTCCCCTGTTCCAATTATAAG 58.198 38.462 0.00 0.00 0.00 1.73
2140 5913 6.652205 ACTTCCCCTGTTCCAATTATAAGA 57.348 37.500 0.00 0.00 0.00 2.10
2141 5914 7.226059 ACTTCCCCTGTTCCAATTATAAGAT 57.774 36.000 0.00 0.00 0.00 2.40
2142 5915 7.062957 ACTTCCCCTGTTCCAATTATAAGATG 58.937 38.462 0.00 0.00 0.00 2.90
2143 5916 6.590656 TCCCCTGTTCCAATTATAAGATGT 57.409 37.500 0.00 0.00 0.00 3.06
2144 5917 6.980577 TCCCCTGTTCCAATTATAAGATGTT 58.019 36.000 0.00 0.00 0.00 2.71
2145 5918 7.418378 TCCCCTGTTCCAATTATAAGATGTTT 58.582 34.615 0.00 0.00 0.00 2.83
2146 5919 7.898636 TCCCCTGTTCCAATTATAAGATGTTTT 59.101 33.333 0.00 0.00 0.00 2.43
2147 5920 7.981225 CCCCTGTTCCAATTATAAGATGTTTTG 59.019 37.037 0.00 0.00 0.00 2.44
2148 5921 8.748412 CCCTGTTCCAATTATAAGATGTTTTGA 58.252 33.333 0.00 0.00 0.00 2.69
2160 5933 8.902540 ATAAGATGTTTTGATATAGCCGAACA 57.097 30.769 8.20 8.20 0.00 3.18
2161 5934 7.624360 AAGATGTTTTGATATAGCCGAACAA 57.376 32.000 9.40 0.00 31.69 2.83
2162 5935 7.624360 AGATGTTTTGATATAGCCGAACAAA 57.376 32.000 9.40 0.00 31.69 2.83
2163 5936 8.050778 AGATGTTTTGATATAGCCGAACAAAA 57.949 30.769 9.40 0.00 37.85 2.44
2165 5938 6.534615 GTTTTGATATAGCCGAACAAAACG 57.465 37.500 14.63 0.00 44.87 3.60
2166 5939 5.866335 TTTGATATAGCCGAACAAAACGT 57.134 34.783 0.00 0.00 0.00 3.99
2167 5940 5.866335 TTGATATAGCCGAACAAAACGTT 57.134 34.783 0.00 0.00 41.86 3.99
2187 5960 5.032327 GTTCTATAATTGGGAACGGAGGT 57.968 43.478 0.00 0.00 31.76 3.85
2188 5961 6.165700 GTTCTATAATTGGGAACGGAGGTA 57.834 41.667 0.00 0.00 31.76 3.08
2189 5962 6.221659 GTTCTATAATTGGGAACGGAGGTAG 58.778 44.000 0.00 0.00 31.76 3.18
2190 5963 5.461327 TCTATAATTGGGAACGGAGGTAGT 58.539 41.667 0.00 0.00 0.00 2.73
2191 5964 6.613699 TCTATAATTGGGAACGGAGGTAGTA 58.386 40.000 0.00 0.00 0.00 1.82
2192 5965 7.243824 TCTATAATTGGGAACGGAGGTAGTAT 58.756 38.462 0.00 0.00 0.00 2.12
2193 5966 6.758806 ATAATTGGGAACGGAGGTAGTATT 57.241 37.500 0.00 0.00 0.00 1.89
2194 5967 5.446260 AATTGGGAACGGAGGTAGTATTT 57.554 39.130 0.00 0.00 0.00 1.40
2195 5968 3.899052 TGGGAACGGAGGTAGTATTTG 57.101 47.619 0.00 0.00 0.00 2.32
2248 6021 0.249868 CTCAGTTGTGCCCGTCAAGA 60.250 55.000 0.00 0.00 0.00 3.02
2254 6027 2.747446 GTTGTGCCCGTCAAGAATATGT 59.253 45.455 0.00 0.00 0.00 2.29
2288 6061 7.618019 TTAGGACTTTAGATGCTGTATGGAT 57.382 36.000 0.00 0.00 0.00 3.41
2289 6062 8.721133 TTAGGACTTTAGATGCTGTATGGATA 57.279 34.615 0.00 0.00 0.00 2.59
2290 6063 7.805083 AGGACTTTAGATGCTGTATGGATAT 57.195 36.000 0.00 0.00 0.00 1.63
2291 6064 8.901472 AGGACTTTAGATGCTGTATGGATATA 57.099 34.615 0.00 0.00 0.00 0.86
2292 6065 8.754080 AGGACTTTAGATGCTGTATGGATATAC 58.246 37.037 0.00 0.00 39.69 1.47
2293 6066 8.754080 GGACTTTAGATGCTGTATGGATATACT 58.246 37.037 0.00 0.00 39.90 2.12
2294 6067 9.796120 GACTTTAGATGCTGTATGGATATACTC 57.204 37.037 0.00 0.00 39.90 2.59
2359 6133 7.120285 CAGTGGCTCATTTCTTTAGATCTTCAA 59.880 37.037 0.00 0.00 0.00 2.69
2396 6170 7.307694 CAAGAGCATAAATACAAGCTGTTCAA 58.692 34.615 0.00 0.00 38.35 2.69
2397 6171 7.081526 AGAGCATAAATACAAGCTGTTCAAG 57.918 36.000 0.00 0.00 37.48 3.02
2407 6181 1.615392 AGCTGTTCAAGGCATTGGAAC 59.385 47.619 11.73 13.80 37.02 3.62
2419 6193 3.569701 GGCATTGGAACTTCTTTGACTGA 59.430 43.478 0.00 0.00 0.00 3.41
2424 6198 7.327032 GCATTGGAACTTCTTTGACTGATTAAC 59.673 37.037 0.00 0.00 0.00 2.01
2431 6205 9.793259 AACTTCTTTGACTGATTAACATCCTTA 57.207 29.630 0.00 0.00 0.00 2.69
2432 6206 9.220767 ACTTCTTTGACTGATTAACATCCTTAC 57.779 33.333 0.00 0.00 0.00 2.34
2433 6207 8.561738 TTCTTTGACTGATTAACATCCTTACC 57.438 34.615 0.00 0.00 0.00 2.85
2446 6220 4.289672 ACATCCTTACCAATGAGGAGTTGT 59.710 41.667 0.00 0.00 43.51 3.32
2475 6249 2.891580 TGGGATCCGAGAGCATAAGTAC 59.108 50.000 5.45 0.00 0.00 2.73
2499 6273 8.589335 ACAAGTTGATAATAGCTACGTATTGG 57.411 34.615 10.54 0.00 0.00 3.16
2514 6288 5.113383 ACGTATTGGATTTAGACGCAATCA 58.887 37.500 0.00 0.00 37.02 2.57
2538 6312 6.734104 TGTTCAAAAGAACATTTGGGTTTG 57.266 33.333 6.94 0.00 39.80 2.93
2578 6357 7.099266 TCTGCATCTGGGTACAATTAATTTG 57.901 36.000 0.00 0.00 41.36 2.32
2623 6402 6.644347 TCCTCTGCCTTTAGTAAGATTTCTG 58.356 40.000 0.00 0.00 32.92 3.02
2639 6419 6.516718 AGATTTCTGTACCGTCCATCTTATG 58.483 40.000 0.00 0.00 0.00 1.90
2645 6425 4.403113 TGTACCGTCCATCTTATGCAAGTA 59.597 41.667 0.00 0.00 33.20 2.24
2650 6430 6.041637 ACCGTCCATCTTATGCAAGTATTCTA 59.958 38.462 0.00 0.00 33.20 2.10
2682 6462 7.385205 GTCTTATGTTCTTGTTCTTCAGCTGTA 59.615 37.037 14.67 2.58 0.00 2.74
2722 6502 4.037208 GCTTGGAGTTTATATGCTGCATGT 59.963 41.667 24.59 20.24 33.29 3.21
2759 6539 7.017645 CAGTAATGTAAATGAACTGTGCAGTC 58.982 38.462 5.22 0.94 41.58 3.51
2760 6540 6.710295 AGTAATGTAAATGAACTGTGCAGTCA 59.290 34.615 5.22 6.20 41.58 3.41
2763 6543 4.881273 TGTAAATGAACTGTGCAGTCACTT 59.119 37.500 5.22 4.95 41.58 3.16
2840 6620 6.669125 ATGACAATGGAATTTCTTTGACCA 57.331 33.333 17.03 13.83 31.22 4.02
2891 6671 4.150359 AGGAATTGCATGAATCTGGGATC 58.850 43.478 0.00 0.00 0.00 3.36
2896 6676 1.610102 GCATGAATCTGGGATCCGAGG 60.610 57.143 22.21 7.41 0.00 4.63
2900 6680 1.700042 AATCTGGGATCCGAGGGCAC 61.700 60.000 22.21 0.00 0.00 5.01
2920 6705 8.217799 AGGGCACAAAGTTGATAATAGCTATTA 58.782 33.333 24.71 24.71 33.16 0.98
2945 6730 8.931385 ATATTTAGATGCAATGGTGTTCAAAC 57.069 30.769 0.00 0.00 0.00 2.93
3207 7014 1.378911 TGCAGCCGATGAAGCCAAT 60.379 52.632 0.00 0.00 0.00 3.16
3212 7019 2.717485 CGATGAAGCCAATGCGGG 59.283 61.111 0.00 0.00 44.33 6.13
3213 7020 2.837883 CGATGAAGCCAATGCGGGG 61.838 63.158 0.00 0.00 44.33 5.73
3265 7072 4.577693 GGCTGAATCTGAATCACATTAGCA 59.422 41.667 11.40 0.00 0.00 3.49
3267 7074 5.296283 GCTGAATCTGAATCACATTAGCAGT 59.704 40.000 0.00 0.00 0.00 4.40
3268 7075 6.481313 GCTGAATCTGAATCACATTAGCAGTA 59.519 38.462 0.00 0.00 0.00 2.74
3269 7076 7.172875 GCTGAATCTGAATCACATTAGCAGTAT 59.827 37.037 0.00 0.00 0.00 2.12
3270 7077 9.702494 CTGAATCTGAATCACATTAGCAGTATA 57.298 33.333 0.00 0.00 0.00 1.47
3271 7078 9.481340 TGAATCTGAATCACATTAGCAGTATAC 57.519 33.333 0.00 0.00 0.00 1.47
3272 7079 9.703892 GAATCTGAATCACATTAGCAGTATACT 57.296 33.333 0.00 0.00 0.00 2.12
3273 7080 9.486497 AATCTGAATCACATTAGCAGTATACTG 57.514 33.333 25.68 25.68 46.40 2.74
3287 7108 3.702045 AGTATACTGTCCCTTGTGCTCTC 59.298 47.826 4.10 0.00 0.00 3.20
3293 7114 1.048601 TCCCTTGTGCTCTCTTTCGT 58.951 50.000 0.00 0.00 0.00 3.85
3295 7116 1.270305 CCCTTGTGCTCTCTTTCGTGA 60.270 52.381 0.00 0.00 0.00 4.35
3357 7178 5.706833 TGATGTATGCAGTGACTCATGTTTT 59.293 36.000 0.00 0.00 0.00 2.43
3361 7182 2.543848 TGCAGTGACTCATGTTTTCGTC 59.456 45.455 0.00 0.00 0.00 4.20
3402 7227 6.054860 TGCTAGCTCAAATTAGAAACCTCT 57.945 37.500 17.23 0.00 35.52 3.69
3486 7311 6.038356 GCACATGAATAAGTTGATTGGAAGG 58.962 40.000 0.00 0.00 0.00 3.46
3615 7442 4.148696 CGCTGTAAATGCTTGAAACCAAAG 59.851 41.667 0.00 0.00 0.00 2.77
3622 7449 9.807649 GTAAATGCTTGAAACCAAAGATATGAT 57.192 29.630 0.00 0.00 0.00 2.45
3638 7465 6.107343 AGATATGATCTATGATGCAGCACAC 58.893 40.000 6.89 0.00 38.00 3.82
3709 7536 4.744795 ACTTGACTCGATAGCCTGAATT 57.255 40.909 0.00 0.00 0.00 2.17
3725 7552 5.681954 GCCTGAATTTGCAATATAACCTGCA 60.682 40.000 0.00 4.00 46.50 4.41
3844 7675 6.175471 TCATTGCACATCTTGTTCTGATACT 58.825 36.000 0.00 0.00 0.00 2.12
3894 7725 8.246908 TCAATGTATACTGTCGTAAACAAAGG 57.753 34.615 4.17 0.00 37.45 3.11
3895 7726 6.657836 ATGTATACTGTCGTAAACAAAGGC 57.342 37.500 4.17 0.00 37.45 4.35
3899 7730 4.705337 ACTGTCGTAAACAAAGGCAAAA 57.295 36.364 0.00 0.00 37.45 2.44
3900 7731 5.257082 ACTGTCGTAAACAAAGGCAAAAT 57.743 34.783 0.00 0.00 37.45 1.82
3906 7838 7.380065 TGTCGTAAACAAAGGCAAAATGTATTC 59.620 33.333 0.00 0.00 34.03 1.75
3907 7839 6.864165 TCGTAAACAAAGGCAAAATGTATTCC 59.136 34.615 0.00 0.00 0.00 3.01
3925 7857 5.733620 ATTCCATTTGACATGAAACTGCT 57.266 34.783 0.00 0.00 0.00 4.24
3931 7863 6.425721 CCATTTGACATGAAACTGCTTGAAAT 59.574 34.615 0.00 0.00 0.00 2.17
3939 7871 8.579006 ACATGAAACTGCTTGAAATCAAAGATA 58.421 29.630 0.00 0.00 35.15 1.98
3950 7882 6.728200 TGAAATCAAAGATAATGGACGATGC 58.272 36.000 0.00 0.00 0.00 3.91
3979 7913 5.287752 GCACACAAATCAGCATCATAACTTG 59.712 40.000 0.00 0.00 0.00 3.16
3982 7916 7.061441 CACACAAATCAGCATCATAACTTGAAC 59.939 37.037 0.00 0.00 38.03 3.18
3983 7917 6.529125 CACAAATCAGCATCATAACTTGAACC 59.471 38.462 0.00 0.00 38.03 3.62
3985 7919 3.270027 TCAGCATCATAACTTGAACCGG 58.730 45.455 0.00 0.00 38.03 5.28
3990 7924 1.279846 TCATAACTTGAACCGGGGTCC 59.720 52.381 10.13 0.00 0.00 4.46
3991 7925 5.561065 ATCATAACTTGAACCGGGGTCCG 62.561 52.174 10.13 3.16 41.68 4.79
4003 7986 2.480845 CGGGGTCCGTTTATGATCTTC 58.519 52.381 0.00 0.00 42.73 2.87
4013 7996 5.451937 CCGTTTATGATCTTCCAGTGAGCTA 60.452 44.000 0.00 0.00 0.00 3.32
4040 8023 6.149973 TCAGATTCACATAGGAAAGTTGCTTG 59.850 38.462 0.00 0.00 0.00 4.01
4062 8045 5.139727 TGGAACATGAACTGAAAACAGGAT 58.860 37.500 0.00 0.00 0.00 3.24
4084 8071 6.693113 GGATCAAAGTTGAGAACTGAAAACAC 59.307 38.462 0.00 0.00 41.91 3.32
4089 8076 5.983540 AGTTGAGAACTGAAAACACTCTCT 58.016 37.500 0.00 0.00 41.01 3.10
4090 8077 7.113658 AGTTGAGAACTGAAAACACTCTCTA 57.886 36.000 0.00 0.00 41.01 2.43
4101 8088 6.980978 TGAAAACACTCTCTAAGTTCAGACTG 59.019 38.462 0.00 0.00 35.45 3.51
4107 8094 2.564947 CTCTAAGTTCAGACTGGGCAGT 59.435 50.000 1.81 0.00 45.84 4.40
4108 8095 2.300152 TCTAAGTTCAGACTGGGCAGTG 59.700 50.000 1.81 0.00 42.66 3.66
4171 8177 0.247460 TGCCGATCAAGTCCAGACTG 59.753 55.000 0.05 0.00 41.58 3.51
4175 8181 2.625737 CGATCAAGTCCAGACTGCAAT 58.374 47.619 0.05 0.00 41.58 3.56
4185 8191 4.218417 GTCCAGACTGCAATTAAATGTGGT 59.782 41.667 0.00 0.00 0.00 4.16
4207 8213 5.589050 GGTATTTCCAAGGTATCTTCCACAC 59.411 44.000 0.00 0.00 35.97 3.82
4277 8284 7.852263 AGCTGTAACACCATCTACTTCTAATT 58.148 34.615 0.00 0.00 0.00 1.40
4287 8294 7.993758 ACCATCTACTTCTAATTTAAAGGCTCC 59.006 37.037 0.00 0.00 0.00 4.70
4288 8295 8.214364 CCATCTACTTCTAATTTAAAGGCTCCT 58.786 37.037 0.00 0.00 0.00 3.69
4289 8296 9.050601 CATCTACTTCTAATTTAAAGGCTCCTG 57.949 37.037 0.00 0.00 0.00 3.86
4290 8297 7.048512 TCTACTTCTAATTTAAAGGCTCCTGC 58.951 38.462 0.00 0.00 38.76 4.85
4300 8307 4.379174 GCTCCTGCCAACGAAGAA 57.621 55.556 0.00 0.00 0.00 2.52
4315 8332 8.287503 GCCAACGAAGAAAAGAAATAGAACTTA 58.712 33.333 0.00 0.00 0.00 2.24
4345 8362 5.411361 TCATGGTTTGAAAACTATCTGACCG 59.589 40.000 5.93 0.00 37.91 4.79
4349 8366 1.626321 TGAAAACTATCTGACCGGCCA 59.374 47.619 0.00 0.00 0.00 5.36
4414 8442 4.222114 CCATTTCGCAACAACTCTTTCTC 58.778 43.478 0.00 0.00 0.00 2.87
4415 8443 4.023707 CCATTTCGCAACAACTCTTTCTCT 60.024 41.667 0.00 0.00 0.00 3.10
4452 8480 2.116736 TTTCTTTGACAGGCGCTGCG 62.117 55.000 19.17 19.17 34.37 5.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 2.625639 ACAAGAGGGCCATAGGATAGG 58.374 52.381 6.18 0.00 0.00 2.57
15 16 3.008485 GGAACAAGAGGGCCATAGGATAG 59.992 52.174 6.18 0.00 0.00 2.08
28 3452 4.142730 GCTTAACATCTGCAGGAACAAGAG 60.143 45.833 15.13 5.74 0.00 2.85
31 3455 3.754965 AGCTTAACATCTGCAGGAACAA 58.245 40.909 15.13 0.00 0.00 2.83
37 3461 6.915300 CAGTACTACTAGCTTAACATCTGCAG 59.085 42.308 7.63 7.63 0.00 4.41
42 3466 8.630917 TGGATTCAGTACTACTAGCTTAACATC 58.369 37.037 0.00 0.00 0.00 3.06
77 3501 9.547753 CTTAAAGTGGCTTAGCTAGATTTCATA 57.452 33.333 3.59 0.00 0.00 2.15
78 3502 7.012799 GCTTAAAGTGGCTTAGCTAGATTTCAT 59.987 37.037 3.59 0.00 0.00 2.57
82 3506 4.811557 CGCTTAAAGTGGCTTAGCTAGATT 59.188 41.667 3.59 0.00 0.00 2.40
90 3514 1.663643 CGATGCGCTTAAAGTGGCTTA 59.336 47.619 9.73 0.00 0.00 3.09
91 3515 0.447801 CGATGCGCTTAAAGTGGCTT 59.552 50.000 9.73 0.00 0.00 4.35
126 3555 4.393834 TCAATGGTGAATCGAAGACCAAA 58.606 39.130 15.20 4.53 42.96 3.28
143 3572 2.036862 TCTCTCATCGGAGCCATCAATG 59.963 50.000 0.00 0.00 41.13 2.82
144 3573 2.323599 TCTCTCATCGGAGCCATCAAT 58.676 47.619 0.00 0.00 41.13 2.57
145 3574 1.780503 TCTCTCATCGGAGCCATCAA 58.219 50.000 0.00 0.00 41.13 2.57
165 3594 2.832129 AGGTCTACTCGGCTTCAATTCA 59.168 45.455 0.00 0.00 0.00 2.57
191 3620 2.125766 AACCCCTCAACGAAGCCCTC 62.126 60.000 0.00 0.00 0.00 4.30
193 3622 1.971695 CAACCCCTCAACGAAGCCC 60.972 63.158 0.00 0.00 0.00 5.19
198 3627 1.070786 GTCAGCAACCCCTCAACGA 59.929 57.895 0.00 0.00 0.00 3.85
264 3694 3.826466 CCTTTGAACCTTGATTCGCTTC 58.174 45.455 0.00 0.00 0.00 3.86
266 3696 1.541588 GCCTTTGAACCTTGATTCGCT 59.458 47.619 0.00 0.00 0.00 4.93
268 3698 1.804151 TCGCCTTTGAACCTTGATTCG 59.196 47.619 0.00 0.00 0.00 3.34
270 3700 3.140325 TCTCGCCTTTGAACCTTGATT 57.860 42.857 0.00 0.00 0.00 2.57
272 3702 2.218603 GTTCTCGCCTTTGAACCTTGA 58.781 47.619 0.00 0.00 37.26 3.02
292 3722 3.343788 GACACCTCACCCTCTCGCG 62.344 68.421 0.00 0.00 0.00 5.87
318 3748 4.740822 GGACTTGGGCATGGCGGT 62.741 66.667 13.76 11.61 0.00 5.68
327 3757 3.492102 TCTTTCTTCACTGGACTTGGG 57.508 47.619 0.00 0.00 0.00 4.12
335 3765 3.251972 GCCAACCTCTTCTTTCTTCACTG 59.748 47.826 0.00 0.00 0.00 3.66
338 3768 3.136443 TCAGCCAACCTCTTCTTTCTTCA 59.864 43.478 0.00 0.00 0.00 3.02
341 3771 2.708325 ACTCAGCCAACCTCTTCTTTCT 59.292 45.455 0.00 0.00 0.00 2.52
342 3772 2.810852 CACTCAGCCAACCTCTTCTTTC 59.189 50.000 0.00 0.00 0.00 2.62
357 3787 0.179134 GCTACACCGTAGCCACTCAG 60.179 60.000 13.92 0.00 34.65 3.35
360 3790 1.975407 ACGCTACACCGTAGCCACT 60.975 57.895 17.94 1.27 40.08 4.00
364 3794 1.082117 ATTGCACGCTACACCGTAGC 61.082 55.000 14.71 14.71 39.83 3.58
368 3798 1.695893 CCTGATTGCACGCTACACCG 61.696 60.000 0.00 0.00 0.00 4.94
369 3799 0.391130 TCCTGATTGCACGCTACACC 60.391 55.000 0.00 0.00 0.00 4.16
385 3815 2.936032 GCCCTTCACCACCCTCCT 60.936 66.667 0.00 0.00 0.00 3.69
388 3818 3.322466 CTCGCCCTTCACCACCCT 61.322 66.667 0.00 0.00 0.00 4.34
402 3832 4.619227 ACACCGCCACAACCCTCG 62.619 66.667 0.00 0.00 0.00 4.63
403 3833 2.978010 CACACCGCCACAACCCTC 60.978 66.667 0.00 0.00 0.00 4.30
404 3834 3.804329 ACACACCGCCACAACCCT 61.804 61.111 0.00 0.00 0.00 4.34
405 3835 3.591835 CACACACCGCCACAACCC 61.592 66.667 0.00 0.00 0.00 4.11
408 3838 2.899838 GCTCACACACCGCCACAA 60.900 61.111 0.00 0.00 0.00 3.33
411 3841 4.624364 CCTGCTCACACACCGCCA 62.624 66.667 0.00 0.00 0.00 5.69
412 3842 4.314440 TCCTGCTCACACACCGCC 62.314 66.667 0.00 0.00 0.00 6.13
413 3843 2.740055 CTCCTGCTCACACACCGC 60.740 66.667 0.00 0.00 0.00 5.68
414 3844 0.317160 TAACTCCTGCTCACACACCG 59.683 55.000 0.00 0.00 0.00 4.94
416 3846 3.195825 AGGTATAACTCCTGCTCACACAC 59.804 47.826 0.00 0.00 33.62 3.82
417 3847 3.441101 AGGTATAACTCCTGCTCACACA 58.559 45.455 0.00 0.00 33.62 3.72
418 3848 4.500035 GCTAGGTATAACTCCTGCTCACAC 60.500 50.000 0.00 0.00 36.60 3.82
419 3849 3.637229 GCTAGGTATAACTCCTGCTCACA 59.363 47.826 0.00 0.00 36.60 3.58
420 3850 3.006003 GGCTAGGTATAACTCCTGCTCAC 59.994 52.174 0.00 0.00 36.60 3.51
421 3851 3.231818 GGCTAGGTATAACTCCTGCTCA 58.768 50.000 0.00 0.00 36.60 4.26
422 3852 3.231818 TGGCTAGGTATAACTCCTGCTC 58.768 50.000 0.00 0.00 36.60 4.26
423 3853 3.330126 TGGCTAGGTATAACTCCTGCT 57.670 47.619 0.00 0.00 36.60 4.24
424 3854 4.040461 TCAATGGCTAGGTATAACTCCTGC 59.960 45.833 0.00 0.00 36.60 4.85
425 3855 5.808366 TCAATGGCTAGGTATAACTCCTG 57.192 43.478 0.00 0.00 36.60 3.86
427 3857 5.411781 CGATCAATGGCTAGGTATAACTCC 58.588 45.833 0.00 0.00 0.00 3.85
428 3858 5.411781 CCGATCAATGGCTAGGTATAACTC 58.588 45.833 0.00 0.00 0.00 3.01
429 3859 4.223032 CCCGATCAATGGCTAGGTATAACT 59.777 45.833 0.00 0.00 0.00 2.24
430 3860 4.222145 TCCCGATCAATGGCTAGGTATAAC 59.778 45.833 0.00 0.00 0.00 1.89
431 3861 4.422057 TCCCGATCAATGGCTAGGTATAA 58.578 43.478 0.00 0.00 0.00 0.98
432 3862 4.055710 TCCCGATCAATGGCTAGGTATA 57.944 45.455 0.00 0.00 0.00 1.47
433 3863 2.902608 TCCCGATCAATGGCTAGGTAT 58.097 47.619 0.00 0.00 0.00 2.73
434 3864 2.391926 TCCCGATCAATGGCTAGGTA 57.608 50.000 0.00 0.00 0.00 3.08
435 3865 1.507140 TTCCCGATCAATGGCTAGGT 58.493 50.000 0.00 0.00 0.00 3.08
436 3866 2.304180 AGATTCCCGATCAATGGCTAGG 59.696 50.000 0.00 0.00 37.22 3.02
437 3867 3.692257 AGATTCCCGATCAATGGCTAG 57.308 47.619 0.00 0.00 37.22 3.42
438 3868 4.346709 TGTAAGATTCCCGATCAATGGCTA 59.653 41.667 0.00 0.00 37.22 3.93
439 3869 3.136443 TGTAAGATTCCCGATCAATGGCT 59.864 43.478 0.00 0.00 37.22 4.75
440 3870 3.476552 TGTAAGATTCCCGATCAATGGC 58.523 45.455 0.00 0.00 37.22 4.40
441 3871 6.262944 TCAAATGTAAGATTCCCGATCAATGG 59.737 38.462 0.00 0.00 37.22 3.16
442 3872 7.263100 TCAAATGTAAGATTCCCGATCAATG 57.737 36.000 0.00 0.00 37.22 2.82
443 3873 8.469309 AATCAAATGTAAGATTCCCGATCAAT 57.531 30.769 0.00 0.00 37.22 2.57
444 3874 7.880160 AATCAAATGTAAGATTCCCGATCAA 57.120 32.000 0.00 0.00 37.22 2.57
446 3876 7.141363 CCAAATCAAATGTAAGATTCCCGATC 58.859 38.462 0.00 0.00 33.58 3.69
448 3878 5.949354 ACCAAATCAAATGTAAGATTCCCGA 59.051 36.000 0.00 0.00 33.58 5.14
449 3879 6.207691 ACCAAATCAAATGTAAGATTCCCG 57.792 37.500 0.00 0.00 33.58 5.14
459 3889 9.739276 TCAGTTTCTCTATACCAAATCAAATGT 57.261 29.630 0.00 0.00 0.00 2.71
464 3894 8.717821 CGTTTTCAGTTTCTCTATACCAAATCA 58.282 33.333 0.00 0.00 0.00 2.57
466 3896 8.842358 TCGTTTTCAGTTTCTCTATACCAAAT 57.158 30.769 0.00 0.00 0.00 2.32
467 3897 8.145767 TCTCGTTTTCAGTTTCTCTATACCAAA 58.854 33.333 0.00 0.00 0.00 3.28
469 3899 7.223260 TCTCGTTTTCAGTTTCTCTATACCA 57.777 36.000 0.00 0.00 0.00 3.25
470 3900 6.752815 CCTCTCGTTTTCAGTTTCTCTATACC 59.247 42.308 0.00 0.00 0.00 2.73
471 3901 7.536855 TCCTCTCGTTTTCAGTTTCTCTATAC 58.463 38.462 0.00 0.00 0.00 1.47
472 3902 7.610692 TCTCCTCTCGTTTTCAGTTTCTCTATA 59.389 37.037 0.00 0.00 0.00 1.31
473 3903 6.434652 TCTCCTCTCGTTTTCAGTTTCTCTAT 59.565 38.462 0.00 0.00 0.00 1.98
474 3904 5.768662 TCTCCTCTCGTTTTCAGTTTCTCTA 59.231 40.000 0.00 0.00 0.00 2.43
475 3905 4.585162 TCTCCTCTCGTTTTCAGTTTCTCT 59.415 41.667 0.00 0.00 0.00 3.10
476 3906 4.872664 TCTCCTCTCGTTTTCAGTTTCTC 58.127 43.478 0.00 0.00 0.00 2.87
477 3907 4.262249 CCTCTCCTCTCGTTTTCAGTTTCT 60.262 45.833 0.00 0.00 0.00 2.52
478 3908 3.991121 CCTCTCCTCTCGTTTTCAGTTTC 59.009 47.826 0.00 0.00 0.00 2.78
479 3909 3.641906 TCCTCTCCTCTCGTTTTCAGTTT 59.358 43.478 0.00 0.00 0.00 2.66
480 3910 3.231818 TCCTCTCCTCTCGTTTTCAGTT 58.768 45.455 0.00 0.00 0.00 3.16
483 3913 3.231818 ACTTCCTCTCCTCTCGTTTTCA 58.768 45.455 0.00 0.00 0.00 2.69
484 3914 3.945981 ACTTCCTCTCCTCTCGTTTTC 57.054 47.619 0.00 0.00 0.00 2.29
486 3916 3.007074 GGAAACTTCCTCTCCTCTCGTTT 59.993 47.826 0.97 0.00 44.11 3.60
488 3918 2.172679 GGAAACTTCCTCTCCTCTCGT 58.827 52.381 0.97 0.00 44.11 4.18
489 3919 2.951457 GGAAACTTCCTCTCCTCTCG 57.049 55.000 0.97 0.00 44.11 4.04
500 3930 4.978580 GCACATGAAACAAGAGGAAACTTC 59.021 41.667 0.00 0.00 44.43 3.01
503 3933 4.044426 GTGCACATGAAACAAGAGGAAAC 58.956 43.478 13.17 0.00 0.00 2.78
504 3934 3.243035 CGTGCACATGAAACAAGAGGAAA 60.243 43.478 18.64 0.00 0.00 3.13
505 3935 2.290367 CGTGCACATGAAACAAGAGGAA 59.710 45.455 18.64 0.00 0.00 3.36
507 3937 1.872952 TCGTGCACATGAAACAAGAGG 59.127 47.619 18.64 0.00 0.00 3.69
509 3939 1.264020 GCTCGTGCACATGAAACAAGA 59.736 47.619 18.64 1.27 39.41 3.02
510 3940 1.265095 AGCTCGTGCACATGAAACAAG 59.735 47.619 18.64 0.00 42.74 3.16
511 3941 1.308047 AGCTCGTGCACATGAAACAA 58.692 45.000 18.64 0.00 42.74 2.83
512 3942 2.068519 CTAGCTCGTGCACATGAAACA 58.931 47.619 18.64 0.00 42.74 2.83
513 3943 1.394917 CCTAGCTCGTGCACATGAAAC 59.605 52.381 18.64 2.32 42.74 2.78
514 3944 1.675714 CCCTAGCTCGTGCACATGAAA 60.676 52.381 18.64 0.00 42.74 2.69
516 3946 0.970427 TCCCTAGCTCGTGCACATGA 60.970 55.000 18.64 5.93 42.74 3.07
517 3947 0.529337 CTCCCTAGCTCGTGCACATG 60.529 60.000 18.64 9.67 42.74 3.21
518 3948 0.684479 TCTCCCTAGCTCGTGCACAT 60.684 55.000 18.64 1.74 42.74 3.21
520 3950 1.435515 CTCTCCCTAGCTCGTGCAC 59.564 63.158 12.58 6.82 42.74 4.57
522 3952 1.755008 ACCTCTCCCTAGCTCGTGC 60.755 63.158 0.07 0.07 40.05 5.34
523 3953 1.388065 CCACCTCTCCCTAGCTCGTG 61.388 65.000 0.00 0.00 0.00 4.35
524 3954 1.076632 CCACCTCTCCCTAGCTCGT 60.077 63.158 0.00 0.00 0.00 4.18
525 3955 1.830408 CCCACCTCTCCCTAGCTCG 60.830 68.421 0.00 0.00 0.00 5.03
528 3958 1.458588 CCTCCCACCTCTCCCTAGC 60.459 68.421 0.00 0.00 0.00 3.42
529 3959 0.637195 TTCCTCCCACCTCTCCCTAG 59.363 60.000 0.00 0.00 0.00 3.02
530 3960 1.098589 TTTCCTCCCACCTCTCCCTA 58.901 55.000 0.00 0.00 0.00 3.53
531 3961 0.547954 GTTTCCTCCCACCTCTCCCT 60.548 60.000 0.00 0.00 0.00 4.20
532 3962 1.900545 CGTTTCCTCCCACCTCTCCC 61.901 65.000 0.00 0.00 0.00 4.30
533 3963 0.903454 TCGTTTCCTCCCACCTCTCC 60.903 60.000 0.00 0.00 0.00 3.71
534 3964 1.134670 CATCGTTTCCTCCCACCTCTC 60.135 57.143 0.00 0.00 0.00 3.20
535 3965 0.905357 CATCGTTTCCTCCCACCTCT 59.095 55.000 0.00 0.00 0.00 3.69
536 3966 0.107654 CCATCGTTTCCTCCCACCTC 60.108 60.000 0.00 0.00 0.00 3.85
537 3967 0.546747 TCCATCGTTTCCTCCCACCT 60.547 55.000 0.00 0.00 0.00 4.00
538 3968 0.107654 CTCCATCGTTTCCTCCCACC 60.108 60.000 0.00 0.00 0.00 4.61
539 3969 0.107654 CCTCCATCGTTTCCTCCCAC 60.108 60.000 0.00 0.00 0.00 4.61
541 3971 1.153147 GCCTCCATCGTTTCCTCCC 60.153 63.158 0.00 0.00 0.00 4.30
543 3973 0.806492 GTCGCCTCCATCGTTTCCTC 60.806 60.000 0.00 0.00 0.00 3.71
545 3975 1.084370 CAGTCGCCTCCATCGTTTCC 61.084 60.000 0.00 0.00 0.00 3.13
546 3976 0.108804 TCAGTCGCCTCCATCGTTTC 60.109 55.000 0.00 0.00 0.00 2.78
547 3977 0.320374 TTCAGTCGCCTCCATCGTTT 59.680 50.000 0.00 0.00 0.00 3.60
549 3979 1.067212 GTATTCAGTCGCCTCCATCGT 59.933 52.381 0.00 0.00 0.00 3.73
551 3981 1.067212 ACGTATTCAGTCGCCTCCATC 59.933 52.381 0.00 0.00 0.00 3.51
552 3982 1.112113 ACGTATTCAGTCGCCTCCAT 58.888 50.000 0.00 0.00 0.00 3.41
553 3983 1.402968 GTACGTATTCAGTCGCCTCCA 59.597 52.381 0.00 0.00 0.00 3.86
554 3984 1.268948 GGTACGTATTCAGTCGCCTCC 60.269 57.143 0.00 0.00 0.00 4.30
555 3985 1.402968 TGGTACGTATTCAGTCGCCTC 59.597 52.381 0.00 0.00 0.00 4.70
556 3986 1.133790 GTGGTACGTATTCAGTCGCCT 59.866 52.381 0.00 0.00 0.00 5.52
558 3988 1.133790 AGGTGGTACGTATTCAGTCGC 59.866 52.381 0.00 0.00 0.00 5.19
559 3989 3.873361 TCTAGGTGGTACGTATTCAGTCG 59.127 47.826 0.00 0.00 0.00 4.18
560 3990 7.389884 TGATATCTAGGTGGTACGTATTCAGTC 59.610 40.741 0.00 0.00 0.00 3.51
562 3992 7.528307 GTGATATCTAGGTGGTACGTATTCAG 58.472 42.308 0.00 0.00 0.00 3.02
563 3993 6.148315 CGTGATATCTAGGTGGTACGTATTCA 59.852 42.308 0.00 0.00 0.00 2.57
564 3994 6.369890 TCGTGATATCTAGGTGGTACGTATTC 59.630 42.308 0.00 0.00 0.00 1.75
565 3995 6.148480 GTCGTGATATCTAGGTGGTACGTATT 59.852 42.308 0.00 0.00 0.00 1.89
566 3996 5.641209 GTCGTGATATCTAGGTGGTACGTAT 59.359 44.000 0.00 0.00 0.00 3.06
567 3997 4.991056 GTCGTGATATCTAGGTGGTACGTA 59.009 45.833 3.98 0.00 0.00 3.57
568 3998 3.812053 GTCGTGATATCTAGGTGGTACGT 59.188 47.826 3.98 0.00 0.00 3.57
570 4000 3.188048 CGGTCGTGATATCTAGGTGGTAC 59.812 52.174 3.98 0.00 0.00 3.34
571 4001 3.405831 CGGTCGTGATATCTAGGTGGTA 58.594 50.000 3.98 0.00 0.00 3.25
572 4002 2.228059 CGGTCGTGATATCTAGGTGGT 58.772 52.381 3.98 0.00 0.00 4.16
573 4003 1.068472 GCGGTCGTGATATCTAGGTGG 60.068 57.143 3.98 0.00 0.00 4.61
574 4004 1.607148 TGCGGTCGTGATATCTAGGTG 59.393 52.381 3.98 0.00 0.00 4.00
576 4006 3.050619 GTTTGCGGTCGTGATATCTAGG 58.949 50.000 3.98 0.00 0.00 3.02
577 4007 3.966154 AGTTTGCGGTCGTGATATCTAG 58.034 45.455 3.98 0.00 0.00 2.43
578 4008 3.243301 GGAGTTTGCGGTCGTGATATCTA 60.243 47.826 3.98 0.00 0.00 1.98
579 4009 2.481449 GGAGTTTGCGGTCGTGATATCT 60.481 50.000 3.98 0.00 0.00 1.98
580 4010 1.859080 GGAGTTTGCGGTCGTGATATC 59.141 52.381 0.00 0.00 0.00 1.63
581 4011 1.801395 CGGAGTTTGCGGTCGTGATAT 60.801 52.381 0.00 0.00 0.00 1.63
582 4012 0.457166 CGGAGTTTGCGGTCGTGATA 60.457 55.000 0.00 0.00 0.00 2.15
583 4013 1.736645 CGGAGTTTGCGGTCGTGAT 60.737 57.895 0.00 0.00 0.00 3.06
584 4014 2.149803 ATCGGAGTTTGCGGTCGTGA 62.150 55.000 0.00 0.00 0.00 4.35
585 4015 1.683790 GATCGGAGTTTGCGGTCGTG 61.684 60.000 0.00 0.00 30.41 4.35
587 4017 0.806102 ATGATCGGAGTTTGCGGTCG 60.806 55.000 0.00 0.00 44.55 4.79
588 4018 0.652592 CATGATCGGAGTTTGCGGTC 59.347 55.000 0.00 0.00 41.87 4.79
591 4021 5.405269 TGATTATACATGATCGGAGTTTGCG 59.595 40.000 0.00 0.00 0.00 4.85
592 4022 6.785488 TGATTATACATGATCGGAGTTTGC 57.215 37.500 0.00 0.00 0.00 3.68
623 4084 9.683069 GTGAAAAATGCGATCCTATTTTCATAT 57.317 29.630 18.36 5.67 45.90 1.78
624 4085 7.855409 CGTGAAAAATGCGATCCTATTTTCATA 59.145 33.333 18.36 7.25 45.90 2.15
625 4086 6.692681 CGTGAAAAATGCGATCCTATTTTCAT 59.307 34.615 18.36 6.40 45.90 2.57
626 4087 6.027131 CGTGAAAAATGCGATCCTATTTTCA 58.973 36.000 14.40 14.40 43.68 2.69
628 4089 4.798387 GCGTGAAAAATGCGATCCTATTTT 59.202 37.500 8.13 8.13 37.92 1.82
629 4090 4.142491 TGCGTGAAAAATGCGATCCTATTT 60.142 37.500 0.00 0.00 44.39 1.40
630 4091 3.376859 TGCGTGAAAAATGCGATCCTATT 59.623 39.130 0.00 0.00 44.39 1.73
644 4169 4.250116 ACTTGCCAATAAATGCGTGAAA 57.750 36.364 0.00 0.00 0.00 2.69
645 4170 3.932545 ACTTGCCAATAAATGCGTGAA 57.067 38.095 0.00 0.00 0.00 3.18
647 4172 3.367630 GGAAACTTGCCAATAAATGCGTG 59.632 43.478 0.00 0.00 0.00 5.34
648 4173 3.006323 TGGAAACTTGCCAATAAATGCGT 59.994 39.130 0.00 0.00 31.13 5.24
650 4175 6.316319 CAAATGGAAACTTGCCAATAAATGC 58.684 36.000 0.00 0.00 39.21 3.56
651 4176 6.316319 GCAAATGGAAACTTGCCAATAAATG 58.684 36.000 0.00 0.00 41.69 2.32
652 4177 6.499234 GCAAATGGAAACTTGCCAATAAAT 57.501 33.333 0.00 0.00 41.69 1.40
653 4178 5.938438 GCAAATGGAAACTTGCCAATAAA 57.062 34.783 0.00 0.00 41.69 1.40
660 4185 0.321564 GGGGGCAAATGGAAACTTGC 60.322 55.000 0.00 0.00 45.79 4.01
661 4186 1.055040 TGGGGGCAAATGGAAACTTG 58.945 50.000 0.00 0.00 0.00 3.16
662 4187 2.043307 ATGGGGGCAAATGGAAACTT 57.957 45.000 0.00 0.00 0.00 2.66
663 4188 2.043307 AATGGGGGCAAATGGAAACT 57.957 45.000 0.00 0.00 0.00 2.66
664 4189 2.093181 GGTAATGGGGGCAAATGGAAAC 60.093 50.000 0.00 0.00 0.00 2.78
665 4190 2.192263 GGTAATGGGGGCAAATGGAAA 58.808 47.619 0.00 0.00 0.00 3.13
666 4191 1.623834 GGGTAATGGGGGCAAATGGAA 60.624 52.381 0.00 0.00 0.00 3.53
667 4192 0.031616 GGGTAATGGGGGCAAATGGA 60.032 55.000 0.00 0.00 0.00 3.41
668 4193 0.031212 AGGGTAATGGGGGCAAATGG 60.031 55.000 0.00 0.00 0.00 3.16
669 4194 2.765689 TAGGGTAATGGGGGCAAATG 57.234 50.000 0.00 0.00 0.00 2.32
670 4195 2.862597 TCTTAGGGTAATGGGGGCAAAT 59.137 45.455 0.00 0.00 0.00 2.32
671 4196 2.289467 TCTTAGGGTAATGGGGGCAAA 58.711 47.619 0.00 0.00 0.00 3.68
672 4197 1.988539 TCTTAGGGTAATGGGGGCAA 58.011 50.000 0.00 0.00 0.00 4.52
673 4198 2.222461 ATCTTAGGGTAATGGGGGCA 57.778 50.000 0.00 0.00 0.00 5.36
674 4199 3.914435 TCTTATCTTAGGGTAATGGGGGC 59.086 47.826 0.00 0.00 0.00 5.80
723 4270 4.353737 GTTTTCTTAACGACCAAACACCC 58.646 43.478 0.00 0.00 0.00 4.61
724 4271 4.030366 CGTTTTCTTAACGACCAAACACC 58.970 43.478 4.16 0.00 45.64 4.16
734 4281 6.038356 TCTTAGCCCTATCGTTTTCTTAACG 58.962 40.000 3.82 3.82 44.29 3.18
736 4283 8.724229 GTTTTCTTAGCCCTATCGTTTTCTTAA 58.276 33.333 0.00 0.00 0.00 1.85
737 4284 8.098912 AGTTTTCTTAGCCCTATCGTTTTCTTA 58.901 33.333 0.00 0.00 0.00 2.10
740 4287 6.738832 AGTTTTCTTAGCCCTATCGTTTTC 57.261 37.500 0.00 0.00 0.00 2.29
743 4290 5.105064 TGCTAGTTTTCTTAGCCCTATCGTT 60.105 40.000 2.20 0.00 36.09 3.85
744 4291 4.404715 TGCTAGTTTTCTTAGCCCTATCGT 59.595 41.667 2.20 0.00 36.09 3.73
745 4292 4.945246 TGCTAGTTTTCTTAGCCCTATCG 58.055 43.478 2.20 0.00 36.09 2.92
753 4312 9.959775 CTTTCTTAACGATGCTAGTTTTCTTAG 57.040 33.333 0.00 0.00 33.42 2.18
759 4318 5.389516 CGTGCTTTCTTAACGATGCTAGTTT 60.390 40.000 0.00 0.00 39.64 2.66
760 4319 4.091509 CGTGCTTTCTTAACGATGCTAGTT 59.908 41.667 0.00 0.00 39.64 2.24
761 4320 3.612860 CGTGCTTTCTTAACGATGCTAGT 59.387 43.478 0.00 0.00 39.64 2.57
762 4321 3.857665 TCGTGCTTTCTTAACGATGCTAG 59.142 43.478 0.00 0.00 41.08 3.42
776 4335 1.981256 AACACCCTGATTCGTGCTTT 58.019 45.000 0.00 0.00 33.09 3.51
783 4342 4.003648 CACTAGACCAAACACCCTGATTC 58.996 47.826 0.00 0.00 0.00 2.52
939 4500 1.227674 CTCGAGGTATTGCTGGGCC 60.228 63.158 3.91 0.00 0.00 5.80
961 4522 0.106519 ATGGCTGGCCTTATGTGGTC 60.107 55.000 13.05 0.00 36.94 4.02
1043 4606 0.323178 AACGGCGGTAGAGAAGAGGA 60.323 55.000 13.24 0.00 0.00 3.71
1053 4616 2.562912 GTGAGACGAACGGCGGTA 59.437 61.111 13.24 0.00 46.49 4.02
1082 4645 4.887987 GATCCTCGCGCTGCTGCT 62.888 66.667 14.03 0.00 36.97 4.24
1088 4651 4.615815 GCCATGGATCCTCGCGCT 62.616 66.667 18.40 0.00 0.00 5.92
1091 4654 4.996434 CCCGCCATGGATCCTCGC 62.996 72.222 18.40 10.49 42.00 5.03
1092 4655 4.320456 CCCCGCCATGGATCCTCG 62.320 72.222 18.40 8.99 42.00 4.63
1093 4656 3.958860 CCCCCGCCATGGATCCTC 61.959 72.222 18.40 0.00 42.00 3.71
1094 4657 4.514594 TCCCCCGCCATGGATCCT 62.515 66.667 18.40 0.00 42.00 3.24
1155 4718 0.178964 TTCTTGGCCTTGGTCTTGGG 60.179 55.000 3.32 0.00 0.00 4.12
1156 4719 1.251251 CTTCTTGGCCTTGGTCTTGG 58.749 55.000 3.32 0.00 0.00 3.61
1157 4720 0.600057 GCTTCTTGGCCTTGGTCTTG 59.400 55.000 3.32 0.00 0.00 3.02
1158 4721 3.042481 GCTTCTTGGCCTTGGTCTT 57.958 52.632 3.32 0.00 0.00 3.01
1159 4722 4.830573 GCTTCTTGGCCTTGGTCT 57.169 55.556 3.32 0.00 0.00 3.85
1430 5167 1.234821 TGGCGTCCTTGTTCACAATC 58.765 50.000 0.00 0.00 35.02 2.67
1433 5170 0.888736 CCATGGCGTCCTTGTTCACA 60.889 55.000 0.00 0.00 0.00 3.58
1436 5173 2.700773 GGCCATGGCGTCCTTGTTC 61.701 63.158 29.90 9.36 43.06 3.18
1573 5317 4.696402 CCCAACAAACCAAATCAATCATGG 59.304 41.667 0.00 0.00 40.16 3.66
1597 5341 0.616371 AAATTCGTCACCCGGATCCA 59.384 50.000 13.41 0.00 32.04 3.41
1598 5342 1.014352 CAAATTCGTCACCCGGATCC 58.986 55.000 0.73 0.00 32.04 3.36
1599 5343 1.734163 ACAAATTCGTCACCCGGATC 58.266 50.000 0.73 0.00 32.04 3.36
1600 5344 1.810151 CAACAAATTCGTCACCCGGAT 59.190 47.619 0.73 0.00 35.87 4.18
1601 5345 1.231221 CAACAAATTCGTCACCCGGA 58.769 50.000 0.73 0.00 37.11 5.14
1602 5346 0.386731 GCAACAAATTCGTCACCCGG 60.387 55.000 0.00 0.00 37.11 5.73
1603 5347 0.386731 GGCAACAAATTCGTCACCCG 60.387 55.000 0.00 0.00 38.13 5.28
1604 5348 0.958822 AGGCAACAAATTCGTCACCC 59.041 50.000 0.00 0.00 41.41 4.61
1605 5349 3.190535 ACATAGGCAACAAATTCGTCACC 59.809 43.478 0.00 0.00 41.41 4.02
1606 5350 4.083537 TCACATAGGCAACAAATTCGTCAC 60.084 41.667 0.00 0.00 41.41 3.67
1624 5368 4.450053 CAAACCACCCAAACATTTCACAT 58.550 39.130 0.00 0.00 0.00 3.21
1649 5393 5.123936 AGTAATTTACCGCTGATTTCTCCC 58.876 41.667 2.92 0.00 0.00 4.30
1657 5401 3.060736 TGCCAAGTAATTTACCGCTGA 57.939 42.857 2.92 0.00 0.00 4.26
1658 5402 4.104776 CAATGCCAAGTAATTTACCGCTG 58.895 43.478 2.92 0.00 0.00 5.18
1662 5406 9.463443 GAATATGTCAATGCCAAGTAATTTACC 57.537 33.333 2.92 0.00 0.00 2.85
1669 5413 7.566760 AAATCGAATATGTCAATGCCAAGTA 57.433 32.000 0.00 0.00 0.00 2.24
1675 5419 6.017109 ACCCAGTAAATCGAATATGTCAATGC 60.017 38.462 0.00 0.00 0.00 3.56
1677 5421 6.423905 CGACCCAGTAAATCGAATATGTCAAT 59.576 38.462 0.00 0.00 38.10 2.57
1682 5426 6.183359 CGAATCGACCCAGTAAATCGAATATG 60.183 42.308 0.00 0.00 46.90 1.78
1683 5427 5.862323 CGAATCGACCCAGTAAATCGAATAT 59.138 40.000 0.00 0.00 46.90 1.28
1684 5428 5.008911 TCGAATCGACCCAGTAAATCGAATA 59.991 40.000 0.00 0.00 46.90 1.75
1689 5437 3.797256 CACTCGAATCGACCCAGTAAATC 59.203 47.826 0.00 0.00 0.00 2.17
1759 5510 5.312895 TGCCAAGAAATTAACTACTGCTGA 58.687 37.500 0.00 0.00 0.00 4.26
1763 5514 7.336931 ACCAGTATGCCAAGAAATTAACTACTG 59.663 37.037 0.00 0.00 35.48 2.74
1791 5551 5.922053 ACTATGTCAGCAATGCAGATTCTA 58.078 37.500 8.35 0.00 0.00 2.10
1856 5616 4.514577 ATGGGTTCGCTCTCGCCG 62.515 66.667 0.00 0.00 35.26 6.46
1858 5618 1.019278 TTTGATGGGTTCGCTCTCGC 61.019 55.000 0.00 0.00 35.26 5.03
1859 5619 1.328680 CATTTGATGGGTTCGCTCTCG 59.671 52.381 0.00 0.00 0.00 4.04
1863 5636 0.527565 GTGCATTTGATGGGTTCGCT 59.472 50.000 0.00 0.00 0.00 4.93
1867 5640 2.607499 TCCTTGTGCATTTGATGGGTT 58.393 42.857 0.00 0.00 0.00 4.11
1874 5647 3.006110 ACCATCAGTTCCTTGTGCATTTG 59.994 43.478 0.00 0.00 0.00 2.32
1875 5648 3.233507 ACCATCAGTTCCTTGTGCATTT 58.766 40.909 0.00 0.00 0.00 2.32
1882 5655 1.200020 GCCGAAACCATCAGTTCCTTG 59.800 52.381 0.00 0.00 37.88 3.61
1883 5656 1.534729 GCCGAAACCATCAGTTCCTT 58.465 50.000 0.00 0.00 37.88 3.36
1890 5663 1.674359 ATATTGCGCCGAAACCATCA 58.326 45.000 4.18 0.00 0.00 3.07
1894 5667 1.334689 GCCTAATATTGCGCCGAAACC 60.335 52.381 4.18 0.00 0.00 3.27
1900 5673 2.481952 CAGAGAAGCCTAATATTGCGCC 59.518 50.000 4.18 0.00 0.00 6.53
1903 5676 4.068599 GGGACAGAGAAGCCTAATATTGC 58.931 47.826 0.00 0.00 0.00 3.56
1904 5677 5.163258 ACAGGGACAGAGAAGCCTAATATTG 60.163 44.000 0.00 0.00 0.00 1.90
1906 5679 4.346418 CACAGGGACAGAGAAGCCTAATAT 59.654 45.833 0.00 0.00 0.00 1.28
1967 5740 0.679640 TGGCCCTGCAAATAAGACCG 60.680 55.000 0.00 0.00 0.00 4.79
1969 5742 2.760092 TCATTGGCCCTGCAAATAAGAC 59.240 45.455 0.00 0.00 29.39 3.01
2057 5830 0.107831 CCACAAACTCGGGGAACTCA 59.892 55.000 0.00 0.00 0.00 3.41
2093 5866 3.644966 AAACAACACTGACCTTCCAGA 57.355 42.857 0.00 0.00 37.59 3.86
2113 5886 6.652205 ATAATTGGAACAGGGGAAGTAGAA 57.348 37.500 0.00 0.00 42.39 2.10
2117 5890 6.652205 TCTTATAATTGGAACAGGGGAAGT 57.348 37.500 0.00 0.00 42.39 3.01
2120 5893 6.590656 ACATCTTATAATTGGAACAGGGGA 57.409 37.500 0.00 0.00 42.39 4.81
2122 5895 8.748412 TCAAAACATCTTATAATTGGAACAGGG 58.252 33.333 0.00 0.00 42.39 4.45
2134 5907 9.990360 TGTTCGGCTATATCAAAACATCTTATA 57.010 29.630 0.00 0.00 0.00 0.98
2135 5908 8.902540 TGTTCGGCTATATCAAAACATCTTAT 57.097 30.769 0.00 0.00 0.00 1.73
2136 5909 8.725405 TTGTTCGGCTATATCAAAACATCTTA 57.275 30.769 0.00 0.00 0.00 2.10
2137 5910 7.624360 TTGTTCGGCTATATCAAAACATCTT 57.376 32.000 0.00 0.00 0.00 2.40
2138 5911 7.624360 TTTGTTCGGCTATATCAAAACATCT 57.376 32.000 0.00 0.00 0.00 2.90
2142 5915 6.081693 ACGTTTTGTTCGGCTATATCAAAAC 58.918 36.000 16.58 16.58 46.35 2.43
2143 5916 6.243811 ACGTTTTGTTCGGCTATATCAAAA 57.756 33.333 0.00 0.00 36.23 2.44
2144 5917 5.866335 ACGTTTTGTTCGGCTATATCAAA 57.134 34.783 0.00 0.00 0.00 2.69
2145 5918 5.860641 GAACGTTTTGTTCGGCTATATCAA 58.139 37.500 0.46 0.00 46.85 2.57
2146 5919 5.459110 GAACGTTTTGTTCGGCTATATCA 57.541 39.130 0.46 0.00 46.85 2.15
2165 5938 5.032327 ACCTCCGTTCCCAATTATAGAAC 57.968 43.478 4.96 4.96 37.20 3.01
2166 5939 5.901276 ACTACCTCCGTTCCCAATTATAGAA 59.099 40.000 0.00 0.00 0.00 2.10
2167 5940 5.461327 ACTACCTCCGTTCCCAATTATAGA 58.539 41.667 0.00 0.00 0.00 1.98
2168 5941 5.803237 ACTACCTCCGTTCCCAATTATAG 57.197 43.478 0.00 0.00 0.00 1.31
2169 5942 7.860649 AATACTACCTCCGTTCCCAATTATA 57.139 36.000 0.00 0.00 0.00 0.98
2170 5943 6.758806 AATACTACCTCCGTTCCCAATTAT 57.241 37.500 0.00 0.00 0.00 1.28
2171 5944 6.070078 ACAAATACTACCTCCGTTCCCAATTA 60.070 38.462 0.00 0.00 0.00 1.40
2172 5945 5.190677 CAAATACTACCTCCGTTCCCAATT 58.809 41.667 0.00 0.00 0.00 2.32
2173 5946 4.226620 ACAAATACTACCTCCGTTCCCAAT 59.773 41.667 0.00 0.00 0.00 3.16
2174 5947 3.583966 ACAAATACTACCTCCGTTCCCAA 59.416 43.478 0.00 0.00 0.00 4.12
2175 5948 3.175594 ACAAATACTACCTCCGTTCCCA 58.824 45.455 0.00 0.00 0.00 4.37
2176 5949 3.900966 ACAAATACTACCTCCGTTCCC 57.099 47.619 0.00 0.00 0.00 3.97
2177 5950 5.303845 AGGATACAAATACTACCTCCGTTCC 59.696 44.000 0.00 0.00 41.41 3.62
2178 5951 6.402456 AGGATACAAATACTACCTCCGTTC 57.598 41.667 0.00 0.00 41.41 3.95
2179 5952 6.402456 GAGGATACAAATACTACCTCCGTT 57.598 41.667 0.00 0.00 38.23 4.44
2183 5956 9.877178 CATAATGGAGGATACAAATACTACCTC 57.123 37.037 0.00 0.00 41.90 3.85
2184 5957 9.393786 ACATAATGGAGGATACAAATACTACCT 57.606 33.333 0.00 0.00 41.41 3.08
2191 5964 9.561069 GACTGTAACATAATGGAGGATACAAAT 57.439 33.333 0.00 0.00 41.41 2.32
2192 5965 8.768397 AGACTGTAACATAATGGAGGATACAAA 58.232 33.333 0.00 0.00 41.41 2.83
2193 5966 8.204160 CAGACTGTAACATAATGGAGGATACAA 58.796 37.037 0.00 0.00 41.41 2.41
2194 5967 7.686859 GCAGACTGTAACATAATGGAGGATACA 60.687 40.741 3.99 0.00 41.41 2.29
2195 5968 6.647067 GCAGACTGTAACATAATGGAGGATAC 59.353 42.308 3.99 0.00 0.00 2.24
2254 6027 8.157476 AGCATCTAAAGTCCTAAACTCAAAGAA 58.843 33.333 0.00 0.00 37.17 2.52
2268 6041 9.796120 GAGTATATCCATACAGCATCTAAAGTC 57.204 37.037 0.00 0.00 39.69 3.01
2316 6089 4.726416 CCACTGCACACTTCATTTACATC 58.274 43.478 0.00 0.00 0.00 3.06
2359 6133 9.771534 GTATTTATGCTCTTGGATTCTCTAAGT 57.228 33.333 1.01 0.00 36.50 2.24
2364 6138 7.228308 AGCTTGTATTTATGCTCTTGGATTCTC 59.772 37.037 0.00 0.00 0.00 2.87
2396 6170 3.571401 CAGTCAAAGAAGTTCCAATGCCT 59.429 43.478 0.00 0.00 0.00 4.75
2397 6171 3.569701 TCAGTCAAAGAAGTTCCAATGCC 59.430 43.478 0.00 0.00 0.00 4.40
2407 6181 8.669243 GGTAAGGATGTTAATCAGTCAAAGAAG 58.331 37.037 0.00 0.00 34.17 2.85
2419 6193 7.213178 ACTCCTCATTGGTAAGGATGTTAAT 57.787 36.000 0.00 0.00 40.83 1.40
2424 6198 4.848357 ACAACTCCTCATTGGTAAGGATG 58.152 43.478 0.00 0.00 40.83 3.51
2431 6205 6.118170 CAGATTCATACAACTCCTCATTGGT 58.882 40.000 0.00 0.00 37.07 3.67
2432 6206 5.530171 CCAGATTCATACAACTCCTCATTGG 59.470 44.000 0.00 0.00 37.10 3.16
2433 6207 5.530171 CCCAGATTCATACAACTCCTCATTG 59.470 44.000 0.00 0.00 0.00 2.82
2446 6220 2.828520 GCTCTCGGATCCCAGATTCATA 59.171 50.000 9.73 0.00 0.00 2.15
2475 6249 8.812147 TCCAATACGTAGCTATTATCAACTTG 57.188 34.615 0.08 0.00 0.00 3.16
2492 6266 5.651172 TGATTGCGTCTAAATCCAATACG 57.349 39.130 0.00 0.00 33.85 3.06
2499 6273 7.750458 TCTTTTGAACATGATTGCGTCTAAATC 59.250 33.333 0.00 0.00 35.10 2.17
2578 6357 2.018515 TGGTGGAACGAGTTTGTTTCC 58.981 47.619 0.00 0.00 38.12 3.13
2589 6368 1.450312 GGCAGAGGATGGTGGAACG 60.450 63.158 0.00 0.00 38.12 3.95
2623 6402 3.793559 ACTTGCATAAGATGGACGGTAC 58.206 45.455 0.00 0.00 37.36 3.34
2639 6419 8.147642 ACATAAGACTGCAATAGAATACTTGC 57.852 34.615 0.51 0.51 46.19 4.01
2645 6425 8.798859 ACAAGAACATAAGACTGCAATAGAAT 57.201 30.769 0.00 0.00 0.00 2.40
2650 6430 7.229306 TGAAGAACAAGAACATAAGACTGCAAT 59.771 33.333 0.00 0.00 0.00 3.56
2682 6462 3.084039 CAAGCACATACACTTGATGGGT 58.916 45.455 0.00 0.00 44.89 4.51
2750 6530 1.888215 ATCACCAAGTGACTGCACAG 58.112 50.000 0.00 0.00 45.65 3.66
2759 6539 5.047802 AGCCAACAATCTAAATCACCAAGTG 60.048 40.000 0.00 0.00 34.45 3.16
2760 6540 5.079643 AGCCAACAATCTAAATCACCAAGT 58.920 37.500 0.00 0.00 0.00 3.16
2763 6543 6.480763 TCTAAGCCAACAATCTAAATCACCA 58.519 36.000 0.00 0.00 0.00 4.17
2797 6577 8.500753 TGTCATTAACAACTTCTGTTTACACT 57.499 30.769 0.00 0.00 46.49 3.55
2855 6635 9.358406 TCATGCAATTCCTAATTCATAACTCAT 57.642 29.630 0.00 0.00 0.00 2.90
2891 6671 2.107950 TATCAACTTTGTGCCCTCGG 57.892 50.000 0.00 0.00 0.00 4.63
2920 6705 7.701924 CGTTTGAACACCATTGCATCTAAATAT 59.298 33.333 0.00 0.00 0.00 1.28
3032 6839 5.163405 GGTGAGAGCTTGTATAAGATGGACA 60.163 44.000 3.01 0.00 35.92 4.02
3129 6936 4.398319 TCCTCTTCTTTTCGGATTGCTTT 58.602 39.130 0.00 0.00 0.00 3.51
3138 6945 7.387948 TCTTTATCCAGTTTCCTCTTCTTTTCG 59.612 37.037 0.00 0.00 0.00 3.46
3186 6993 2.747460 GCTTCATCGGCTGCACCA 60.747 61.111 0.50 0.00 39.03 4.17
3207 7014 0.996583 AAAACTAATCCTCCCCCGCA 59.003 50.000 0.00 0.00 0.00 5.69
3212 7019 5.180810 AGGTCAGAAAAACTAATCCTCCC 57.819 43.478 0.00 0.00 0.00 4.30
3213 7020 8.047310 TCATAAGGTCAGAAAAACTAATCCTCC 58.953 37.037 0.00 0.00 0.00 4.30
3265 7072 3.702045 GAGAGCACAAGGGACAGTATACT 59.298 47.826 0.00 0.00 0.00 2.12
3267 7074 3.982516 AGAGAGCACAAGGGACAGTATA 58.017 45.455 0.00 0.00 0.00 1.47
3268 7075 2.826488 AGAGAGCACAAGGGACAGTAT 58.174 47.619 0.00 0.00 0.00 2.12
3269 7076 2.310779 AGAGAGCACAAGGGACAGTA 57.689 50.000 0.00 0.00 0.00 2.74
3270 7077 1.428869 AAGAGAGCACAAGGGACAGT 58.571 50.000 0.00 0.00 0.00 3.55
3271 7078 2.421619 GAAAGAGAGCACAAGGGACAG 58.578 52.381 0.00 0.00 0.00 3.51
3272 7079 1.270305 CGAAAGAGAGCACAAGGGACA 60.270 52.381 0.00 0.00 0.00 4.02
3273 7080 1.270358 ACGAAAGAGAGCACAAGGGAC 60.270 52.381 0.00 0.00 0.00 4.46
3287 7108 4.676546 TGCATCTAGAGACATCACGAAAG 58.323 43.478 0.00 0.00 0.00 2.62
3293 7114 4.441217 GCAGTTCTGCATCTAGAGACATCA 60.441 45.833 18.26 0.00 34.41 3.07
3295 7116 3.705579 AGCAGTTCTGCATCTAGAGACAT 59.294 43.478 23.69 0.00 37.25 3.06
3357 7178 0.669318 GCTGACGATGTTTGGGACGA 60.669 55.000 0.00 0.00 0.00 4.20
3361 7182 1.331756 GCATAGCTGACGATGTTTGGG 59.668 52.381 0.00 0.00 32.03 4.12
3449 7274 4.308526 TTCATGTGCTACCATTAACCCA 57.691 40.909 0.00 0.00 0.00 4.51
3615 7442 5.873164 TGTGTGCTGCATCATAGATCATATC 59.127 40.000 5.27 0.00 0.00 1.63
3622 7449 4.263435 TGATTTGTGTGCTGCATCATAGA 58.737 39.130 5.27 0.48 0.00 1.98
3709 7536 7.747781 ACTGAAAGCTGCAGGTTATATTGCAA 61.748 38.462 29.86 0.00 43.26 4.08
3725 7552 4.679373 TCTGAGAAACTCACTGAAAGCT 57.321 40.909 0.00 0.00 35.39 3.74
3868 7699 8.879759 CCTTTGTTTACGACAGTATACATTGAT 58.120 33.333 5.50 0.00 41.81 2.57
3876 7707 6.380095 TTTTGCCTTTGTTTACGACAGTAT 57.620 33.333 0.00 0.00 39.94 2.12
3899 7730 7.037438 GCAGTTTCATGTCAAATGGAATACAT 58.963 34.615 9.00 0.00 43.07 2.29
3900 7731 6.209192 AGCAGTTTCATGTCAAATGGAATACA 59.791 34.615 9.00 0.00 0.00 2.29
3906 7838 4.873817 TCAAGCAGTTTCATGTCAAATGG 58.126 39.130 9.00 0.00 0.00 3.16
3907 7839 6.831727 TTTCAAGCAGTTTCATGTCAAATG 57.168 33.333 0.00 0.00 0.00 2.32
3913 7845 6.808829 TCTTTGATTTCAAGCAGTTTCATGT 58.191 32.000 0.00 0.00 37.15 3.21
3925 7857 7.067372 AGCATCGTCCATTATCTTTGATTTCAA 59.933 33.333 0.00 0.00 0.00 2.69
3931 7863 3.561310 GCAGCATCGTCCATTATCTTTGA 59.439 43.478 0.00 0.00 0.00 2.69
3939 7871 3.506108 GCTGCAGCATCGTCCATT 58.494 55.556 33.36 0.00 41.59 3.16
3950 7882 0.312729 TGCTGATTTGTGTGCTGCAG 59.687 50.000 10.11 10.11 33.52 4.41
3962 7894 4.336433 CCGGTTCAAGTTATGATGCTGATT 59.664 41.667 0.00 0.00 38.03 2.57
3985 7919 3.118371 ACTGGAAGATCATAAACGGACCC 60.118 47.826 0.00 0.00 37.43 4.46
3990 7924 4.437239 AGCTCACTGGAAGATCATAAACG 58.563 43.478 0.00 0.00 37.43 3.60
3991 7925 6.578023 AGTAGCTCACTGGAAGATCATAAAC 58.422 40.000 0.00 0.00 35.62 2.01
4003 7986 3.194329 TGTGAATCTGAGTAGCTCACTGG 59.806 47.826 0.00 0.00 37.72 4.00
4013 7996 5.645497 GCAACTTTCCTATGTGAATCTGAGT 59.355 40.000 0.00 0.00 0.00 3.41
4040 8023 5.241506 TGATCCTGTTTTCAGTTCATGTTCC 59.758 40.000 0.00 0.00 45.68 3.62
4062 8045 6.655003 AGAGTGTTTTCAGTTCTCAACTTTGA 59.345 34.615 0.00 0.00 40.46 2.69
4084 8071 2.828520 TGCCCAGTCTGAACTTAGAGAG 59.171 50.000 0.00 0.00 31.71 3.20
4089 8076 2.047061 ACACTGCCCAGTCTGAACTTA 58.953 47.619 0.00 0.00 40.20 2.24
4090 8077 0.839946 ACACTGCCCAGTCTGAACTT 59.160 50.000 0.00 0.00 40.20 2.66
4107 8094 2.908688 TCAACAGCAGCAGACTAACA 57.091 45.000 0.00 0.00 0.00 2.41
4108 8095 3.608008 GCTTTCAACAGCAGCAGACTAAC 60.608 47.826 0.00 0.00 39.83 2.34
4152 8139 0.247460 CAGTCTGGACTTGATCGGCA 59.753 55.000 0.00 0.00 40.20 5.69
4185 8191 6.381498 TGTGTGGAAGATACCTTGGAAATA 57.619 37.500 0.00 0.00 31.62 1.40
4207 8213 9.722056 GAATGGTTCAGTTATAAGCACTATTTG 57.278 33.333 0.00 0.00 37.18 2.32
4239 8246 4.094442 GTGTTACAGCTATTTACAGGTGGC 59.906 45.833 7.18 0.00 46.06 5.01
4241 8248 5.242434 TGGTGTTACAGCTATTTACAGGTG 58.758 41.667 15.65 1.03 46.94 4.00
4242 8249 5.492855 TGGTGTTACAGCTATTTACAGGT 57.507 39.130 15.65 0.00 32.61 4.00
4244 8251 8.198109 AGTAGATGGTGTTACAGCTATTTACAG 58.802 37.037 15.65 0.00 40.91 2.74
4283 8290 0.951558 TTTTCTTCGTTGGCAGGAGC 59.048 50.000 0.00 0.00 41.10 4.70
4287 8294 6.241207 TCTATTTCTTTTCTTCGTTGGCAG 57.759 37.500 0.00 0.00 0.00 4.85
4288 8295 6.262273 AGTTCTATTTCTTTTCTTCGTTGGCA 59.738 34.615 0.00 0.00 0.00 4.92
4289 8296 6.669278 AGTTCTATTTCTTTTCTTCGTTGGC 58.331 36.000 0.00 0.00 0.00 4.52
4315 8332 8.950210 CAGATAGTTTTCAAACCATGACTGTAT 58.050 33.333 0.00 0.00 39.71 2.29
4328 8345 2.039216 TGGCCGGTCAGATAGTTTTCAA 59.961 45.455 3.51 0.00 0.00 2.69
4355 8372 3.771216 AGAGGACATTTCAATGCCTTGT 58.229 40.909 13.45 5.57 40.52 3.16
4414 8442 2.110901 AGAGCCAGAATGTCTGCAAG 57.889 50.000 0.00 0.00 42.98 4.01
4415 8443 2.574006 AAGAGCCAGAATGTCTGCAA 57.426 45.000 0.00 0.00 42.98 4.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.