Multiple sequence alignment - TraesCS4A01G306000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G306000 chr4A 100.000 2891 0 0 1 2891 601008264 601005374 0.000000e+00 5339
1 TraesCS4A01G306000 chr4A 84.069 1155 163 17 15 1158 601016983 601015839 0.000000e+00 1094
2 TraesCS4A01G306000 chr4A 82.744 1159 182 16 9 1156 600975636 600974485 0.000000e+00 1016
3 TraesCS4A01G306000 chr4A 82.012 1173 195 8 4 1169 600930958 600929795 0.000000e+00 983
4 TraesCS4A01G306000 chr4A 85.162 802 110 4 1229 2022 601015798 601014998 0.000000e+00 813
5 TraesCS4A01G306000 chr4A 84.549 809 116 4 1221 2020 600974450 600973642 0.000000e+00 793
6 TraesCS4A01G306000 chr4A 85.814 719 100 2 1219 1935 600912676 600911958 0.000000e+00 761
7 TraesCS4A01G306000 chr4A 83.374 818 124 6 1216 2022 600929781 600928965 0.000000e+00 747
8 TraesCS4A01G306000 chr4B 84.298 1987 267 26 9 1982 5196956 5195002 0.000000e+00 1899
9 TraesCS4A01G306000 chr4B 82.686 2033 316 29 9 2022 5015857 5013842 0.000000e+00 1772
10 TraesCS4A01G306000 chr4B 85.770 1019 144 1 148 1165 4997869 4996851 0.000000e+00 1077
11 TraesCS4A01G306000 chr4B 84.785 815 114 5 1217 2022 5080107 5079294 0.000000e+00 809
12 TraesCS4A01G306000 chr4B 81.181 728 118 13 4 720 5178475 5177756 4.180000e-158 568
13 TraesCS4A01G306000 chr4B 83.054 478 42 12 2305 2765 5076660 5076205 5.800000e-107 398
14 TraesCS4A01G306000 chr4D 84.087 1923 274 27 9 1919 3692972 3694874 0.000000e+00 1827
15 TraesCS4A01G306000 chr4D 82.036 1169 192 16 9 1166 3840900 3839739 0.000000e+00 979
16 TraesCS4A01G306000 chr4D 86.236 712 97 1 1225 1935 3839710 3838999 0.000000e+00 771
17 TraesCS4A01G306000 chr5A 85.625 480 65 4 148 625 549188716 549189193 4.300000e-138 501


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G306000 chr4A 601005374 601008264 2890 True 5339.0 5339 100.0000 1 2891 1 chr4A.!!$R2 2890
1 TraesCS4A01G306000 chr4A 601014998 601016983 1985 True 953.5 1094 84.6155 15 2022 2 chr4A.!!$R5 2007
2 TraesCS4A01G306000 chr4A 600973642 600975636 1994 True 904.5 1016 83.6465 9 2020 2 chr4A.!!$R4 2011
3 TraesCS4A01G306000 chr4A 600928965 600930958 1993 True 865.0 983 82.6930 4 2022 2 chr4A.!!$R3 2018
4 TraesCS4A01G306000 chr4A 600911958 600912676 718 True 761.0 761 85.8140 1219 1935 1 chr4A.!!$R1 716
5 TraesCS4A01G306000 chr4B 5195002 5196956 1954 True 1899.0 1899 84.2980 9 1982 1 chr4B.!!$R4 1973
6 TraesCS4A01G306000 chr4B 5013842 5015857 2015 True 1772.0 1772 82.6860 9 2022 1 chr4B.!!$R2 2013
7 TraesCS4A01G306000 chr4B 4996851 4997869 1018 True 1077.0 1077 85.7700 148 1165 1 chr4B.!!$R1 1017
8 TraesCS4A01G306000 chr4B 5076205 5080107 3902 True 603.5 809 83.9195 1217 2765 2 chr4B.!!$R5 1548
9 TraesCS4A01G306000 chr4B 5177756 5178475 719 True 568.0 568 81.1810 4 720 1 chr4B.!!$R3 716
10 TraesCS4A01G306000 chr4D 3692972 3694874 1902 False 1827.0 1827 84.0870 9 1919 1 chr4D.!!$F1 1910
11 TraesCS4A01G306000 chr4D 3838999 3840900 1901 True 875.0 979 84.1360 9 1935 2 chr4D.!!$R1 1926

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
694 706 0.459489 TGGAGTTGTTGCTGGCAAAC 59.541 50.0 9.67 5.88 37.7 2.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2533 4944 0.032815 TGGCTTCGTCATGTTCGTCA 59.967 50.0 11.25 5.58 0.0 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 5.756347 TGGAGTACAATACAAGTGTTGTCAC 59.244 40.000 16.79 13.30 42.56 3.67
84 85 8.650143 AATATGACAGGAAAACTACCAACATT 57.350 30.769 0.00 0.00 0.00 2.71
120 121 3.389329 ACCAGTCTCAGTGTTCTTGATGT 59.611 43.478 0.00 0.00 0.00 3.06
170 171 3.118038 ACCACTTGAAGTTGGAGCACTTA 60.118 43.478 16.89 0.00 37.11 2.24
361 362 1.304052 GTTGTGCATAGTGGGCCCA 60.304 57.895 24.45 24.45 0.00 5.36
381 382 1.202879 ACATTTTCCGGAGTGGCTTGA 60.203 47.619 3.34 0.00 37.80 3.02
399 400 1.077501 AATGGCAGACCGACATGGG 60.078 57.895 0.00 0.00 45.34 4.00
424 425 7.806014 GGTATTCTTTGTCTCGCAAATACAAAA 59.194 33.333 0.00 0.00 45.00 2.44
466 467 5.130145 TGATTGGTTTTGGGTGACATTTTCT 59.870 36.000 0.00 0.00 0.00 2.52
546 547 6.036577 TCTACAACACATGTCAGCTGATTA 57.963 37.500 21.47 12.85 42.70 1.75
578 584 3.308904 GGGGTCCAATAAGCTTACAGGTT 60.309 47.826 19.92 5.34 39.52 3.50
587 593 7.175990 CCAATAAGCTTACAGGTTTAGTTCCAA 59.824 37.037 8.70 0.00 37.16 3.53
634 646 4.199310 TGAACCTGTCCTCAAACTCTTTG 58.801 43.478 0.00 0.00 41.96 2.77
660 672 2.360165 GGTCATTGCCATTGGAGCTAAG 59.640 50.000 6.95 0.00 0.00 2.18
663 675 3.054139 TCATTGCCATTGGAGCTAAGAGT 60.054 43.478 6.95 0.00 0.00 3.24
694 706 0.459489 TGGAGTTGTTGCTGGCAAAC 59.541 50.000 9.67 5.88 37.70 2.93
701 713 2.548875 TGTTGCTGGCAAACAATCAAC 58.451 42.857 9.67 4.46 40.30 3.18
712 724 4.736168 GCAAACAATCAACTTACAGGCACA 60.736 41.667 0.00 0.00 0.00 4.57
732 744 3.118261 ACAATTCCATCGTCTATGTGCCT 60.118 43.478 0.00 0.00 33.34 4.75
743 755 2.959030 TCTATGTGCCTATTGACTCGCT 59.041 45.455 0.00 0.00 0.00 4.93
763 775 0.834612 TGAAACGGTTGGACCTGTCT 59.165 50.000 0.00 0.00 35.66 3.41
817 829 3.437049 GCTGGAAGGAGTCACATAACAAC 59.563 47.826 0.00 0.00 0.00 3.32
826 838 5.992217 GGAGTCACATAACAACTCTTCAGTT 59.008 40.000 0.00 0.00 44.26 3.16
831 843 6.998074 TCACATAACAACTCTTCAGTTTCCAT 59.002 34.615 0.00 0.00 41.24 3.41
842 854 5.360714 TCTTCAGTTTCCATTGCAAACTCTT 59.639 36.000 1.71 0.00 41.25 2.85
859 871 7.008628 GCAAACTCTTCATATCAATTTGGTTCG 59.991 37.037 0.00 0.00 0.00 3.95
866 878 8.449251 TTCATATCAATTTGGTTCGATCATGA 57.551 30.769 0.00 0.00 0.00 3.07
977 989 5.880332 TCATACAATAGGTTCTTTGGAGCAC 59.120 40.000 0.00 0.00 0.00 4.40
979 991 4.327680 ACAATAGGTTCTTTGGAGCACTC 58.672 43.478 0.00 0.00 0.00 3.51
1044 1057 4.702131 AGGGTGAGATCAAACATGTTTAGC 59.298 41.667 22.87 15.19 0.00 3.09
1069 1082 6.924060 CGGTCATATTCCTAAGAACCTTACTG 59.076 42.308 0.00 0.00 33.97 2.74
1070 1083 7.201884 CGGTCATATTCCTAAGAACCTTACTGA 60.202 40.741 0.00 0.00 33.97 3.41
1087 1100 7.878644 ACCTTACTGACCTTGAAAGTCTTTATC 59.121 37.037 0.00 0.00 35.21 1.75
1095 1108 8.655935 ACCTTGAAAGTCTTTATCATTTGGAT 57.344 30.769 0.00 0.00 40.14 3.41
1113 1126 8.956426 CATTTGGATATAGCCCGTAACAATATT 58.044 33.333 4.18 0.00 0.00 1.28
1116 1129 7.913789 TGGATATAGCCCGTAACAATATTTCT 58.086 34.615 4.18 0.00 0.00 2.52
1142 1155 4.965814 AGCATACCATGGTCACTATCAAG 58.034 43.478 23.76 0.00 35.90 3.02
1178 1191 5.908341 GAGAGTCATATCTCGGAAAAGGTT 58.092 41.667 0.00 0.00 36.64 3.50
1181 1194 6.041069 AGAGTCATATCTCGGAAAAGGTTAGG 59.959 42.308 0.00 0.00 39.21 2.69
1182 1195 4.750598 GTCATATCTCGGAAAAGGTTAGGC 59.249 45.833 0.00 0.00 0.00 3.93
1188 1201 4.654262 TCTCGGAAAAGGTTAGGCTATGAT 59.346 41.667 0.00 0.00 0.00 2.45
1190 1203 5.751586 TCGGAAAAGGTTAGGCTATGATTT 58.248 37.500 0.00 0.00 0.00 2.17
1195 1208 7.410120 AAAAGGTTAGGCTATGATTTTGAGG 57.590 36.000 0.00 0.00 0.00 3.86
1196 1209 5.975988 AGGTTAGGCTATGATTTTGAGGA 57.024 39.130 0.00 0.00 0.00 3.71
1197 1210 5.934781 AGGTTAGGCTATGATTTTGAGGAG 58.065 41.667 0.00 0.00 0.00 3.69
1202 1219 6.257994 AGGCTATGATTTTGAGGAGAATGA 57.742 37.500 0.00 0.00 0.00 2.57
1204 1221 7.296098 AGGCTATGATTTTGAGGAGAATGATT 58.704 34.615 0.00 0.00 0.00 2.57
1206 1223 9.071276 GGCTATGATTTTGAGGAGAATGATTTA 57.929 33.333 0.00 0.00 0.00 1.40
1211 1228 8.331740 TGATTTTGAGGAGAATGATTTAGAGGT 58.668 33.333 0.00 0.00 0.00 3.85
1242 1259 3.378512 TGAGGAGAGCATACCAGTCATT 58.621 45.455 0.00 0.00 0.00 2.57
1282 1299 5.571741 CGTGACTATACCTTTGGCATATACG 59.428 44.000 0.00 0.00 0.00 3.06
1303 1320 3.682718 CGGGCTAGTGGTGAATCTTGATT 60.683 47.826 0.00 0.00 0.00 2.57
1314 1331 9.643693 GTGGTGAATCTTGATTTTTCATGTAAT 57.356 29.630 0.00 0.00 32.48 1.89
1347 1364 6.240549 GGACAGATTCCAGAGGAGATAAAA 57.759 41.667 0.00 0.00 45.10 1.52
1462 1479 4.082136 CCCTCGACCTATCCTATAACAAGC 60.082 50.000 0.00 0.00 0.00 4.01
1482 1499 3.011032 AGCTTTCTGGTGAAATCCCATCT 59.989 43.478 0.00 0.00 40.85 2.90
1506 1523 4.463186 GGTTTGTCAGCTCTAACCTCTCTA 59.537 45.833 10.29 0.00 39.09 2.43
1543 1560 5.555966 TGTCATACAACAACTTATCAGGCA 58.444 37.500 0.00 0.00 0.00 4.75
1560 1577 1.002134 CATGATACCATCCGGGCCC 60.002 63.158 13.57 13.57 42.05 5.80
1635 1652 1.276622 GTGGCTACCCTCTCTCCAAA 58.723 55.000 0.00 0.00 0.00 3.28
1667 1684 3.305064 GCTAGTACTACTGATGCAGAGCC 60.305 52.174 0.00 0.00 35.18 4.70
1688 1705 3.329386 CAAGTGTCGACCATGAAGATGT 58.671 45.455 14.12 0.00 0.00 3.06
1698 1716 8.031864 GTCGACCATGAAGATGTAGATCATATT 58.968 37.037 3.51 0.00 40.15 1.28
1771 1789 3.380142 GTGTTTTGCACCATGTTACTGG 58.620 45.455 0.00 0.51 42.10 4.00
1772 1790 3.067461 GTGTTTTGCACCATGTTACTGGA 59.933 43.478 7.62 0.00 42.10 3.86
1773 1791 3.701542 TGTTTTGCACCATGTTACTGGAA 59.298 39.130 7.62 0.00 39.73 3.53
1783 1801 4.326826 CATGTTACTGGAAAGAAGCTGGA 58.673 43.478 0.00 0.00 0.00 3.86
1809 1827 6.204301 CGATTGCTTACTTCCAGATCATTGAT 59.796 38.462 0.00 0.00 0.00 2.57
1909 1928 2.483745 CAGCCTGCTTCATGTGCG 59.516 61.111 8.42 4.54 0.00 5.34
1988 2019 5.118664 GTGTGTGTACTGCAACTATGTACTG 59.881 44.000 12.69 0.00 37.85 2.74
1991 2022 4.863131 GTGTACTGCAACTATGTACTGGTC 59.137 45.833 12.69 1.10 37.85 4.02
2009 2040 5.305644 ACTGGTCTCTGGTGCTATTATTAGG 59.694 44.000 0.00 0.00 0.00 2.69
2033 2100 2.061773 CTATAAAGGCGCATCGAGTGG 58.938 52.381 10.83 0.00 0.00 4.00
2041 2108 2.096218 GGCGCATCGAGTGGAAATATTC 60.096 50.000 10.83 0.00 0.00 1.75
2067 2134 7.917505 CCATAAATTCTGTAAGATGGCTTGTTC 59.082 37.037 0.00 0.00 46.36 3.18
2069 2136 9.905713 ATAAATTCTGTAAGATGGCTTGTTCTA 57.094 29.630 0.00 0.00 46.36 2.10
2071 2138 9.905713 AAATTCTGTAAGATGGCTTGTTCTATA 57.094 29.630 0.00 0.00 46.36 1.31
2076 2143 8.492673 TGTAAGATGGCTTGTTCTATAAACAG 57.507 34.615 0.00 0.00 35.56 3.16
2079 2146 4.301072 TGGCTTGTTCTATAAACAGCCT 57.699 40.909 21.10 0.00 41.11 4.58
2080 2147 5.429681 TGGCTTGTTCTATAAACAGCCTA 57.570 39.130 21.10 11.87 41.11 3.93
2081 2148 6.001449 TGGCTTGTTCTATAAACAGCCTAT 57.999 37.500 21.10 0.00 41.11 2.57
2082 2149 5.822519 TGGCTTGTTCTATAAACAGCCTATG 59.177 40.000 21.10 0.00 41.11 2.23
2095 2162 6.412362 AACAGCCTATGTATTCTAGTCTGG 57.588 41.667 0.00 0.00 43.00 3.86
2097 2164 5.900123 ACAGCCTATGTATTCTAGTCTGGTT 59.100 40.000 0.00 0.00 41.60 3.67
2098 2165 6.183360 ACAGCCTATGTATTCTAGTCTGGTTG 60.183 42.308 0.00 0.00 41.60 3.77
2121 2188 6.819437 TGTAAACGACACAATAATGTAACCG 58.181 36.000 0.00 0.00 37.82 4.44
2122 2189 4.330740 AACGACACAATAATGTAACCGC 57.669 40.909 0.00 0.00 37.82 5.68
2123 2190 2.346244 ACGACACAATAATGTAACCGCG 59.654 45.455 0.00 0.00 37.82 6.46
2124 2191 2.285371 CGACACAATAATGTAACCGCGG 60.285 50.000 26.86 26.86 37.82 6.46
2125 2192 1.399089 ACACAATAATGTAACCGCGGC 59.601 47.619 28.58 10.14 37.82 6.53
2126 2193 1.398739 CACAATAATGTAACCGCGGCA 59.601 47.619 28.58 16.59 37.82 5.69
2127 2194 1.399089 ACAATAATGTAACCGCGGCAC 59.601 47.619 28.58 23.80 38.24 5.01
2128 2195 1.398739 CAATAATGTAACCGCGGCACA 59.601 47.619 28.86 28.86 0.00 4.57
2129 2196 1.961793 ATAATGTAACCGCGGCACAT 58.038 45.000 30.25 30.25 34.42 3.21
2131 2198 1.740297 AATGTAACCGCGGCACATTA 58.260 45.000 37.68 23.67 40.24 1.90
2132 2199 1.961793 ATGTAACCGCGGCACATTAT 58.038 45.000 30.25 16.56 28.56 1.28
2135 2202 2.159503 TGTAACCGCGGCACATTATTTG 60.160 45.455 28.58 0.00 0.00 2.32
2136 2203 1.169577 AACCGCGGCACATTATTTGA 58.830 45.000 28.58 0.00 0.00 2.69
2137 2204 1.169577 ACCGCGGCACATTATTTGAA 58.830 45.000 28.58 0.00 0.00 2.69
2138 2205 1.748493 ACCGCGGCACATTATTTGAAT 59.252 42.857 28.58 0.00 0.00 2.57
2139 2206 2.223479 ACCGCGGCACATTATTTGAATC 60.223 45.455 28.58 0.00 0.00 2.52
2140 2207 2.384382 CGCGGCACATTATTTGAATCC 58.616 47.619 0.00 0.00 0.00 3.01
2141 2208 2.033299 CGCGGCACATTATTTGAATCCT 59.967 45.455 0.00 0.00 0.00 3.24
2142 2209 3.374745 GCGGCACATTATTTGAATCCTG 58.625 45.455 0.00 0.00 0.00 3.86
2143 2210 3.796504 GCGGCACATTATTTGAATCCTGG 60.797 47.826 0.00 0.00 0.00 4.45
2150 2217 6.982141 CACATTATTTGAATCCTGGTGAATGG 59.018 38.462 0.00 0.00 0.00 3.16
2161 2228 7.872061 ATCCTGGTGAATGGAATACATACTA 57.128 36.000 0.00 0.00 39.40 1.82
2168 2235 7.228507 GGTGAATGGAATACATACTATGTGCAA 59.771 37.037 11.39 0.00 44.60 4.08
2184 2251 4.516092 GTGCAACAACTACGATATGACC 57.484 45.455 0.00 0.00 36.32 4.02
2186 2253 4.630069 GTGCAACAACTACGATATGACCTT 59.370 41.667 0.00 0.00 36.32 3.50
2189 2256 6.021596 GCAACAACTACGATATGACCTTTTG 58.978 40.000 0.00 0.00 0.00 2.44
2201 2268 4.365514 TGACCTTTTGTATCTTGGCAGA 57.634 40.909 0.00 0.00 0.00 4.26
2202 2269 4.072131 TGACCTTTTGTATCTTGGCAGAC 58.928 43.478 0.00 0.00 0.00 3.51
2204 2271 4.666512 ACCTTTTGTATCTTGGCAGACAT 58.333 39.130 0.00 0.00 0.00 3.06
2206 2273 5.183904 ACCTTTTGTATCTTGGCAGACATTC 59.816 40.000 0.00 0.00 0.00 2.67
2208 2275 6.294675 CCTTTTGTATCTTGGCAGACATTCAA 60.295 38.462 0.00 0.00 0.00 2.69
2216 2283 1.537202 GGCAGACATTCAACTCACACC 59.463 52.381 0.00 0.00 0.00 4.16
2217 2284 2.221169 GCAGACATTCAACTCACACCA 58.779 47.619 0.00 0.00 0.00 4.17
2231 2298 2.703536 TCACACCATACACTCTGGTTGT 59.296 45.455 0.00 0.00 44.67 3.32
2234 2301 4.690748 CACACCATACACTCTGGTTGTTAG 59.309 45.833 0.00 0.00 44.67 2.34
2239 2306 3.113260 ACACTCTGGTTGTTAGTGCTC 57.887 47.619 0.00 0.00 43.53 4.26
2251 2318 3.515502 TGTTAGTGCTCAGCTGTATCCTT 59.484 43.478 14.67 0.00 0.00 3.36
2252 2319 2.687700 AGTGCTCAGCTGTATCCTTG 57.312 50.000 14.67 0.00 0.00 3.61
2253 2320 1.905215 AGTGCTCAGCTGTATCCTTGT 59.095 47.619 14.67 0.00 0.00 3.16
2254 2321 2.093764 AGTGCTCAGCTGTATCCTTGTC 60.094 50.000 14.67 0.00 0.00 3.18
2255 2322 1.208052 TGCTCAGCTGTATCCTTGTCC 59.792 52.381 14.67 0.00 0.00 4.02
2256 2323 1.484240 GCTCAGCTGTATCCTTGTCCT 59.516 52.381 14.67 0.00 0.00 3.85
2258 2325 3.030291 CTCAGCTGTATCCTTGTCCTCT 58.970 50.000 14.67 0.00 0.00 3.69
2259 2326 4.211125 CTCAGCTGTATCCTTGTCCTCTA 58.789 47.826 14.67 0.00 0.00 2.43
2260 2327 3.954904 TCAGCTGTATCCTTGTCCTCTAC 59.045 47.826 14.67 0.00 0.00 2.59
2261 2328 3.068873 CAGCTGTATCCTTGTCCTCTACC 59.931 52.174 5.25 0.00 0.00 3.18
2262 2329 2.034812 GCTGTATCCTTGTCCTCTACCG 59.965 54.545 0.00 0.00 0.00 4.02
2263 2330 3.552875 CTGTATCCTTGTCCTCTACCGA 58.447 50.000 0.00 0.00 0.00 4.69
2264 2331 4.145807 CTGTATCCTTGTCCTCTACCGAT 58.854 47.826 0.00 0.00 0.00 4.18
2265 2332 3.889538 TGTATCCTTGTCCTCTACCGATG 59.110 47.826 0.00 0.00 0.00 3.84
2270 2337 1.043116 TGTCCTCTACCGATGCCCTG 61.043 60.000 0.00 0.00 0.00 4.45
2278 2345 2.568623 ACCGATGCCCTGGATAAATC 57.431 50.000 0.00 0.00 0.00 2.17
2281 2348 1.808945 CGATGCCCTGGATAAATCTGC 59.191 52.381 0.00 0.00 0.00 4.26
2301 2380 4.000331 GCTACATGCAGATATCAGGTGT 58.000 45.455 5.32 6.85 42.31 4.16
2302 2381 4.384056 GCTACATGCAGATATCAGGTGTT 58.616 43.478 5.32 0.00 42.31 3.32
2303 2382 5.541845 GCTACATGCAGATATCAGGTGTTA 58.458 41.667 5.32 0.00 42.31 2.41
2315 4720 8.643324 AGATATCAGGTGTTATTCTGTAACTCC 58.357 37.037 5.32 9.76 39.84 3.85
2317 4722 4.768448 TCAGGTGTTATTCTGTAACTCCGA 59.232 41.667 11.26 9.60 42.59 4.55
2318 4723 5.244402 TCAGGTGTTATTCTGTAACTCCGAA 59.756 40.000 11.26 4.09 42.59 4.30
2372 4777 3.370104 TGTTGGGACTGAATTTTGGTGT 58.630 40.909 0.00 0.00 0.00 4.16
2407 4818 2.717639 ACAGAACTTGGTGCTCACTT 57.282 45.000 0.00 0.00 0.00 3.16
2413 4824 2.572290 ACTTGGTGCTCACTTTGTACC 58.428 47.619 0.00 0.00 0.00 3.34
2419 4830 2.744202 GTGCTCACTTTGTACCATCTGG 59.256 50.000 0.00 0.00 42.17 3.86
2422 4833 3.686726 GCTCACTTTGTACCATCTGGAAG 59.313 47.826 2.55 0.00 38.94 3.46
2427 4838 1.367346 TGTACCATCTGGAAGGCCAA 58.633 50.000 5.01 0.00 45.41 4.52
2442 4853 1.068588 GGCCAACTTCAGGTTTGTTCC 59.931 52.381 0.00 0.00 35.74 3.62
2443 4854 2.031870 GCCAACTTCAGGTTTGTTCCT 58.968 47.619 0.00 0.00 35.74 3.36
2447 4858 4.445735 CCAACTTCAGGTTTGTTCCTCCTA 60.446 45.833 0.00 0.00 35.74 2.94
2448 4859 5.130350 CAACTTCAGGTTTGTTCCTCCTAA 58.870 41.667 0.00 0.00 35.74 2.69
2457 4868 2.188817 TGTTCCTCCTAAGAAGCCTCC 58.811 52.381 0.00 0.00 0.00 4.30
2460 4871 3.967987 GTTCCTCCTAAGAAGCCTCCATA 59.032 47.826 0.00 0.00 0.00 2.74
2465 4876 4.820775 TCCTAAGAAGCCTCCATAGATGT 58.179 43.478 0.00 0.00 0.00 3.06
2470 4881 1.373497 GCCTCCATAGATGTCCGCG 60.373 63.158 0.00 0.00 0.00 6.46
2496 4907 3.613689 GGGTCGCCGGGGTAGATC 61.614 72.222 19.13 0.00 0.00 2.75
2497 4908 3.613689 GGTCGCCGGGGTAGATCC 61.614 72.222 19.13 10.35 0.00 3.36
2501 4912 2.623915 CGCCGGGGTAGATCCGTAG 61.624 68.421 11.01 0.00 45.51 3.51
2509 4920 2.633481 GGGTAGATCCGTAGATGGCTTT 59.367 50.000 0.00 0.00 37.00 3.51
2512 4923 3.460857 AGATCCGTAGATGGCTTTGTC 57.539 47.619 0.00 0.00 30.90 3.18
2518 4929 0.744414 TAGATGGCTTTGTCGCTGGC 60.744 55.000 0.00 0.00 0.00 4.85
2519 4930 3.386867 GATGGCTTTGTCGCTGGCG 62.387 63.158 8.80 8.80 41.35 5.69
2520 4931 3.899981 ATGGCTTTGTCGCTGGCGA 62.900 57.895 13.78 13.78 46.87 5.54
2528 4939 3.443925 TCGCTGGCGACTCCTCTG 61.444 66.667 13.78 0.00 44.01 3.35
2530 4941 4.074526 GCTGGCGACTCCTCTGCA 62.075 66.667 0.00 0.00 35.26 4.41
2533 4944 3.386237 GGCGACTCCTCTGCAGGT 61.386 66.667 15.13 3.03 41.28 4.00
2539 4950 0.827925 ACTCCTCTGCAGGTGACGAA 60.828 55.000 15.13 0.00 41.28 3.85
2544 4955 0.678950 TCTGCAGGTGACGAACATGA 59.321 50.000 15.13 0.00 43.35 3.07
2545 4956 0.792640 CTGCAGGTGACGAACATGAC 59.207 55.000 5.57 4.33 43.35 3.06
2546 4957 0.943835 TGCAGGTGACGAACATGACG 60.944 55.000 0.00 7.63 43.35 4.35
2547 4958 0.666274 GCAGGTGACGAACATGACGA 60.666 55.000 19.43 0.72 43.35 4.20
2609 5029 4.504858 GATGGAACCAAGACGACTAACAT 58.495 43.478 0.00 0.00 0.00 2.71
2628 5048 3.136260 ACATGGAAGGGTTTTGCAACAAT 59.864 39.130 0.00 0.00 34.15 2.71
2635 5055 6.183360 GGAAGGGTTTTGCAACAATTTCAAAT 60.183 34.615 0.00 0.00 34.15 2.32
2637 5057 6.794374 AGGGTTTTGCAACAATTTCAAATTC 58.206 32.000 0.00 0.00 34.15 2.17
2639 5059 5.680667 GGTTTTGCAACAATTTCAAATTCGG 59.319 36.000 0.00 0.00 34.15 4.30
2642 5062 3.247173 TGCAACAATTTCAAATTCGGCAC 59.753 39.130 8.00 0.00 0.00 5.01
2648 5068 0.111446 TTCAAATTCGGCACAGGGGA 59.889 50.000 0.00 0.00 0.00 4.81
2660 5080 3.010420 GCACAGGGGAAATACAGTCTTC 58.990 50.000 0.00 0.00 0.00 2.87
2675 5095 4.024556 ACAGTCTTCTTCACATCGCAAAAG 60.025 41.667 0.00 0.00 0.00 2.27
2684 5104 2.355756 CACATCGCAAAAGATAGGGGTG 59.644 50.000 0.00 0.00 35.22 4.61
2717 5139 5.699097 TGATTTTCGTTGTTAAGAAGGGG 57.301 39.130 5.35 0.00 0.00 4.79
2718 5140 5.134661 TGATTTTCGTTGTTAAGAAGGGGT 58.865 37.500 5.35 0.00 0.00 4.95
2719 5141 5.239963 TGATTTTCGTTGTTAAGAAGGGGTC 59.760 40.000 5.35 1.05 0.00 4.46
2720 5142 2.443887 TCGTTGTTAAGAAGGGGTCG 57.556 50.000 5.35 0.00 0.00 4.79
2721 5143 1.962807 TCGTTGTTAAGAAGGGGTCGA 59.037 47.619 5.35 0.00 0.00 4.20
2722 5144 2.564062 TCGTTGTTAAGAAGGGGTCGAT 59.436 45.455 5.35 0.00 0.00 3.59
2723 5145 3.763360 TCGTTGTTAAGAAGGGGTCGATA 59.237 43.478 5.35 0.00 0.00 2.92
2724 5146 4.110482 CGTTGTTAAGAAGGGGTCGATAG 58.890 47.826 0.00 0.00 0.00 2.08
2725 5147 3.814005 TGTTAAGAAGGGGTCGATAGC 57.186 47.619 0.00 0.00 0.00 2.97
2742 5164 8.188139 GGTCGATAGCATCAAAAATAAAAGGAA 58.812 33.333 0.00 0.00 0.00 3.36
2749 5171 7.445096 AGCATCAAAAATAAAAGGAAAACAGGG 59.555 33.333 0.00 0.00 0.00 4.45
2767 5189 8.589701 AAACAGGGTAAATACTAAGAAATGGG 57.410 34.615 0.00 0.00 0.00 4.00
2768 5190 7.519347 ACAGGGTAAATACTAAGAAATGGGA 57.481 36.000 0.00 0.00 0.00 4.37
2769 5191 8.114301 ACAGGGTAAATACTAAGAAATGGGAT 57.886 34.615 0.00 0.00 0.00 3.85
2770 5192 8.218488 ACAGGGTAAATACTAAGAAATGGGATC 58.782 37.037 0.00 0.00 0.00 3.36
2771 5193 8.440771 CAGGGTAAATACTAAGAAATGGGATCT 58.559 37.037 0.00 0.00 0.00 2.75
2772 5194 9.684702 AGGGTAAATACTAAGAAATGGGATCTA 57.315 33.333 0.00 0.00 0.00 1.98
2773 5195 9.945904 GGGTAAATACTAAGAAATGGGATCTAG 57.054 37.037 0.00 0.00 0.00 2.43
2774 5196 9.945904 GGTAAATACTAAGAAATGGGATCTAGG 57.054 37.037 0.00 0.00 0.00 3.02
2775 5197 9.945904 GTAAATACTAAGAAATGGGATCTAGGG 57.054 37.037 0.00 0.00 0.00 3.53
2776 5198 4.984146 ACTAAGAAATGGGATCTAGGGC 57.016 45.455 0.00 0.00 0.00 5.19
2777 5199 2.938956 AAGAAATGGGATCTAGGGCG 57.061 50.000 0.00 0.00 0.00 6.13
2778 5200 0.398318 AGAAATGGGATCTAGGGCGC 59.602 55.000 0.00 0.00 0.00 6.53
2779 5201 0.398318 GAAATGGGATCTAGGGCGCT 59.602 55.000 7.64 8.86 0.00 5.92
2780 5202 0.846693 AAATGGGATCTAGGGCGCTT 59.153 50.000 9.23 0.00 0.00 4.68
2781 5203 1.729586 AATGGGATCTAGGGCGCTTA 58.270 50.000 9.23 0.00 0.00 3.09
2782 5204 1.729586 ATGGGATCTAGGGCGCTTAA 58.270 50.000 9.23 0.00 0.00 1.85
2783 5205 1.502690 TGGGATCTAGGGCGCTTAAA 58.497 50.000 9.23 0.00 0.00 1.52
2784 5206 1.140252 TGGGATCTAGGGCGCTTAAAC 59.860 52.381 9.23 0.00 0.00 2.01
2785 5207 1.416772 GGGATCTAGGGCGCTTAAACT 59.583 52.381 9.23 0.68 0.00 2.66
2786 5208 2.484889 GGATCTAGGGCGCTTAAACTG 58.515 52.381 9.23 0.00 0.00 3.16
2787 5209 2.158943 GGATCTAGGGCGCTTAAACTGT 60.159 50.000 9.23 0.00 0.00 3.55
2788 5210 3.532542 GATCTAGGGCGCTTAAACTGTT 58.467 45.455 9.23 0.00 0.00 3.16
2789 5211 2.695359 TCTAGGGCGCTTAAACTGTTG 58.305 47.619 9.23 0.00 0.00 3.33
2790 5212 2.300723 TCTAGGGCGCTTAAACTGTTGA 59.699 45.455 9.23 0.00 0.00 3.18
2791 5213 1.523758 AGGGCGCTTAAACTGTTGAG 58.476 50.000 7.64 0.00 0.00 3.02
2792 5214 0.109735 GGGCGCTTAAACTGTTGAGC 60.110 55.000 7.64 15.32 41.70 4.26
2793 5215 0.109735 GGCGCTTAAACTGTTGAGCC 60.110 55.000 7.64 13.43 42.02 4.70
2794 5216 0.591170 GCGCTTAAACTGTTGAGCCA 59.409 50.000 17.95 0.00 42.02 4.75
2795 5217 1.400242 GCGCTTAAACTGTTGAGCCAG 60.400 52.381 17.95 9.93 42.02 4.85
2796 5218 2.143122 CGCTTAAACTGTTGAGCCAGA 58.857 47.619 17.95 0.00 42.02 3.86
2797 5219 2.744202 CGCTTAAACTGTTGAGCCAGAT 59.256 45.455 17.95 0.00 42.02 2.90
2798 5220 3.189287 CGCTTAAACTGTTGAGCCAGATT 59.811 43.478 17.95 0.00 42.02 2.40
2799 5221 4.391830 CGCTTAAACTGTTGAGCCAGATTA 59.608 41.667 17.95 0.00 42.02 1.75
2800 5222 5.065218 CGCTTAAACTGTTGAGCCAGATTAT 59.935 40.000 17.95 0.00 42.02 1.28
2801 5223 6.261118 GCTTAAACTGTTGAGCCAGATTATG 58.739 40.000 14.70 0.00 39.78 1.90
2802 5224 4.708726 AAACTGTTGAGCCAGATTATGC 57.291 40.909 0.00 0.00 36.30 3.14
2803 5225 3.641434 ACTGTTGAGCCAGATTATGCT 57.359 42.857 0.00 0.00 41.42 3.79
2807 5229 3.223661 GAGCCAGATTATGCTCCCG 57.776 57.895 0.08 0.00 46.50 5.14
2808 5230 0.394565 GAGCCAGATTATGCTCCCGT 59.605 55.000 0.08 0.00 46.50 5.28
2809 5231 0.839946 AGCCAGATTATGCTCCCGTT 59.160 50.000 0.00 0.00 30.33 4.44
2810 5232 0.947244 GCCAGATTATGCTCCCGTTG 59.053 55.000 0.00 0.00 0.00 4.10
2811 5233 1.747206 GCCAGATTATGCTCCCGTTGT 60.747 52.381 0.00 0.00 0.00 3.32
2812 5234 2.643551 CCAGATTATGCTCCCGTTGTT 58.356 47.619 0.00 0.00 0.00 2.83
2813 5235 3.016736 CCAGATTATGCTCCCGTTGTTT 58.983 45.455 0.00 0.00 0.00 2.83
2814 5236 4.196193 CCAGATTATGCTCCCGTTGTTTA 58.804 43.478 0.00 0.00 0.00 2.01
2815 5237 4.638421 CCAGATTATGCTCCCGTTGTTTAA 59.362 41.667 0.00 0.00 0.00 1.52
2816 5238 5.220854 CCAGATTATGCTCCCGTTGTTTAAG 60.221 44.000 0.00 0.00 0.00 1.85
2817 5239 4.881850 AGATTATGCTCCCGTTGTTTAAGG 59.118 41.667 0.00 0.00 0.00 2.69
2818 5240 2.579410 ATGCTCCCGTTGTTTAAGGT 57.421 45.000 0.00 0.00 0.00 3.50
2819 5241 1.600023 TGCTCCCGTTGTTTAAGGTG 58.400 50.000 0.00 0.00 0.00 4.00
2820 5242 0.240145 GCTCCCGTTGTTTAAGGTGC 59.760 55.000 0.00 0.00 0.00 5.01
2821 5243 0.879090 CTCCCGTTGTTTAAGGTGCC 59.121 55.000 0.00 0.00 0.00 5.01
2822 5244 0.537828 TCCCGTTGTTTAAGGTGCCC 60.538 55.000 0.00 0.00 0.00 5.36
2823 5245 0.538746 CCCGTTGTTTAAGGTGCCCT 60.539 55.000 0.00 0.00 33.87 5.19
2824 5246 1.271488 CCCGTTGTTTAAGGTGCCCTA 60.271 52.381 0.00 0.00 31.13 3.53
2825 5247 2.506444 CCGTTGTTTAAGGTGCCCTAA 58.494 47.619 0.00 0.00 31.13 2.69
2826 5248 2.486592 CCGTTGTTTAAGGTGCCCTAAG 59.513 50.000 0.00 0.00 31.13 2.18
2827 5249 3.404899 CGTTGTTTAAGGTGCCCTAAGA 58.595 45.455 0.00 0.00 31.13 2.10
2828 5250 4.007659 CGTTGTTTAAGGTGCCCTAAGAT 58.992 43.478 0.00 0.00 31.13 2.40
2829 5251 4.142687 CGTTGTTTAAGGTGCCCTAAGATG 60.143 45.833 0.00 0.00 31.13 2.90
2830 5252 4.650972 TGTTTAAGGTGCCCTAAGATGT 57.349 40.909 0.00 0.00 31.13 3.06
2831 5253 4.993028 TGTTTAAGGTGCCCTAAGATGTT 58.007 39.130 0.00 0.00 31.13 2.71
2832 5254 5.390387 TGTTTAAGGTGCCCTAAGATGTTT 58.610 37.500 0.00 0.00 31.13 2.83
2833 5255 6.544650 TGTTTAAGGTGCCCTAAGATGTTTA 58.455 36.000 0.00 0.00 31.13 2.01
2834 5256 7.005296 TGTTTAAGGTGCCCTAAGATGTTTAA 58.995 34.615 0.00 0.00 31.13 1.52
2835 5257 7.506261 TGTTTAAGGTGCCCTAAGATGTTTAAA 59.494 33.333 0.00 0.00 31.13 1.52
2836 5258 5.977489 AAGGTGCCCTAAGATGTTTAAAC 57.023 39.130 11.54 11.54 31.13 2.01
2837 5259 4.993028 AGGTGCCCTAAGATGTTTAAACA 58.007 39.130 22.58 22.58 36.10 2.83
2838 5260 5.010282 AGGTGCCCTAAGATGTTTAAACAG 58.990 41.667 24.22 11.48 35.42 3.16
2839 5261 5.007682 GGTGCCCTAAGATGTTTAAACAGA 58.992 41.667 24.22 10.13 43.04 3.41
2840 5262 5.652452 GGTGCCCTAAGATGTTTAAACAGAT 59.348 40.000 24.22 15.37 43.04 2.90
2841 5263 6.404734 GGTGCCCTAAGATGTTTAAACAGATG 60.405 42.308 24.22 12.81 43.04 2.90
2842 5264 5.125417 TGCCCTAAGATGTTTAAACAGATGC 59.875 40.000 24.22 18.16 43.04 3.91
2843 5265 5.450550 GCCCTAAGATGTTTAAACAGATGCC 60.451 44.000 24.22 11.67 43.04 4.40
2844 5266 5.888161 CCCTAAGATGTTTAAACAGATGCCT 59.112 40.000 24.22 13.40 43.04 4.75
2845 5267 6.183360 CCCTAAGATGTTTAAACAGATGCCTG 60.183 42.308 24.22 11.00 43.04 4.85
2846 5268 6.599244 CCTAAGATGTTTAAACAGATGCCTGA 59.401 38.462 24.22 9.67 43.04 3.86
2847 5269 7.284034 CCTAAGATGTTTAAACAGATGCCTGAT 59.716 37.037 24.22 6.13 43.04 2.90
2848 5270 6.690194 AGATGTTTAAACAGATGCCTGATC 57.310 37.500 24.22 14.07 43.04 2.92
2849 5271 6.182627 AGATGTTTAAACAGATGCCTGATCA 58.817 36.000 24.22 0.00 43.04 2.92
2850 5272 5.885230 TGTTTAAACAGATGCCTGATCAG 57.115 39.130 17.01 16.24 43.02 2.90
2851 5273 4.701651 TGTTTAAACAGATGCCTGATCAGG 59.298 41.667 33.73 33.73 43.02 3.86
2852 5274 5.748734 TGTTTAAACAGATGCCTGATCAGGT 60.749 40.000 36.32 22.20 43.02 4.00
2853 5275 6.521598 TGTTTAAACAGATGCCTGATCAGGTA 60.522 38.462 36.32 33.95 43.02 3.08
2854 5276 7.961837 TGTTTAAACAGATGCCTGATCAGGTAA 60.962 37.037 36.32 27.02 43.02 2.85
2868 5290 2.717639 AGGTAACCTGGATCACATGC 57.282 50.000 0.00 0.00 29.57 4.06
2869 5291 1.915489 AGGTAACCTGGATCACATGCA 59.085 47.619 0.00 0.00 29.57 3.96
2870 5292 2.511218 AGGTAACCTGGATCACATGCAT 59.489 45.455 0.00 0.00 29.57 3.96
2871 5293 2.880890 GGTAACCTGGATCACATGCATC 59.119 50.000 0.00 0.00 0.00 3.91
2872 5294 3.434167 GGTAACCTGGATCACATGCATCT 60.434 47.826 0.00 0.00 0.00 2.90
2873 5295 4.202357 GGTAACCTGGATCACATGCATCTA 60.202 45.833 0.00 0.00 0.00 1.98
2874 5296 4.508551 AACCTGGATCACATGCATCTAA 57.491 40.909 0.00 0.00 0.00 2.10
2875 5297 4.719026 ACCTGGATCACATGCATCTAAT 57.281 40.909 0.00 0.00 0.00 1.73
2876 5298 5.830799 ACCTGGATCACATGCATCTAATA 57.169 39.130 0.00 0.00 0.00 0.98
2877 5299 6.384342 ACCTGGATCACATGCATCTAATAT 57.616 37.500 0.00 0.00 0.00 1.28
2878 5300 6.787170 ACCTGGATCACATGCATCTAATATT 58.213 36.000 0.00 0.00 0.00 1.28
2879 5301 7.236529 ACCTGGATCACATGCATCTAATATTT 58.763 34.615 0.00 0.00 0.00 1.40
2880 5302 7.727186 ACCTGGATCACATGCATCTAATATTTT 59.273 33.333 0.00 0.00 0.00 1.82
2881 5303 8.582437 CCTGGATCACATGCATCTAATATTTTT 58.418 33.333 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.200948 GAGCACCTTGGCAACTGATTC 59.799 52.381 0.00 0.00 35.83 2.52
2 3 1.251251 GAGCACCTTGGCAACTGATT 58.749 50.000 0.00 0.00 35.83 2.57
6 7 0.896940 CCATGAGCACCTTGGCAACT 60.897 55.000 0.00 0.00 33.94 3.16
57 58 9.920946 ATGTTGGTAGTTTTCCTGTCATATTAT 57.079 29.630 0.00 0.00 0.00 1.28
58 59 9.747898 AATGTTGGTAGTTTTCCTGTCATATTA 57.252 29.630 0.00 0.00 0.00 0.98
81 82 5.649395 AGACTGGTCATGTTACCAATCAATG 59.351 40.000 15.09 3.21 45.96 2.82
84 85 4.285775 TGAGACTGGTCATGTTACCAATCA 59.714 41.667 15.09 12.19 45.96 2.57
91 92 4.588951 AGAACACTGAGACTGGTCATGTTA 59.411 41.667 3.51 0.00 32.80 2.41
120 121 5.420725 ACCAGTTATCATGTTAGCACTGA 57.579 39.130 13.65 0.00 34.74 3.41
170 171 5.540337 TCAGATCCAACTCTGTCAAGTTACT 59.460 40.000 1.41 0.00 42.68 2.24
193 194 6.967199 GCACACCATTTAGTTTATTGTAGCTC 59.033 38.462 0.00 0.00 0.00 4.09
361 362 1.202879 TCAAGCCACTCCGGAAAATGT 60.203 47.619 5.23 0.00 36.56 2.71
381 382 1.077501 CCCATGTCGGTCTGCCATT 60.078 57.895 0.00 0.00 34.09 3.16
424 425 7.071273 ACCAATCAGGAATAACATCATCCAAT 58.929 34.615 0.00 0.00 41.22 3.16
466 467 0.107993 CATCCAAGGCTGAAGCTCGA 60.108 55.000 1.74 0.00 41.70 4.04
546 547 8.644432 AAGCTTATTGGACCCCAGATATATAT 57.356 34.615 0.00 0.00 33.81 0.86
634 646 1.666209 CCAATGGCAATGACCCCGAC 61.666 60.000 3.60 0.00 0.00 4.79
660 672 3.064900 ACTCCAGAAGCAATGGAACTC 57.935 47.619 6.10 0.00 46.04 3.01
663 675 3.228188 ACAACTCCAGAAGCAATGGAA 57.772 42.857 6.10 0.00 46.04 3.53
694 706 5.163513 GGAATTGTGCCTGTAAGTTGATTG 58.836 41.667 0.00 0.00 0.00 2.67
701 713 3.009723 ACGATGGAATTGTGCCTGTAAG 58.990 45.455 0.00 0.00 40.16 2.34
712 724 3.845781 AGGCACATAGACGATGGAATT 57.154 42.857 0.45 0.00 40.18 2.17
732 744 3.034721 ACCGTTTCAAGCGAGTCAATA 57.965 42.857 0.00 0.00 0.00 1.90
743 755 1.210967 AGACAGGTCCAACCGTTTCAA 59.789 47.619 0.00 0.00 44.90 2.69
763 775 7.595819 AACATCTCCTGTTAAATTGTTTCCA 57.404 32.000 0.00 0.00 46.30 3.53
817 829 5.009410 AGAGTTTGCAATGGAAACTGAAGAG 59.991 40.000 31.92 0.00 42.42 2.85
826 838 7.465353 TTGATATGAAGAGTTTGCAATGGAA 57.535 32.000 0.00 0.00 0.00 3.53
831 843 7.669427 ACCAAATTGATATGAAGAGTTTGCAA 58.331 30.769 0.00 0.00 0.00 4.08
842 854 7.716560 AGTCATGATCGAACCAAATTGATATGA 59.283 33.333 0.00 0.00 0.00 2.15
859 871 5.564651 GCTCAAGGCTAGAGTAGTCATGATC 60.565 48.000 0.00 0.00 37.47 2.92
866 878 3.165875 TGTTGCTCAAGGCTAGAGTAGT 58.834 45.455 0.00 0.00 42.39 2.73
977 989 2.554370 TTTGGTAACCACTTCGGGAG 57.446 50.000 0.00 0.00 40.22 4.30
1044 1057 6.924060 CAGTAAGGTTCTTAGGAATATGACCG 59.076 42.308 0.00 0.00 33.71 4.79
1069 1082 8.110860 TCCAAATGATAAAGACTTTCAAGGTC 57.889 34.615 3.07 0.00 0.00 3.85
1070 1083 8.655935 ATCCAAATGATAAAGACTTTCAAGGT 57.344 30.769 3.07 0.00 0.00 3.50
1087 1100 6.817765 ATTGTTACGGGCTATATCCAAATG 57.182 37.500 0.00 0.00 0.00 2.32
1095 1108 7.305813 TCCAGAAATATTGTTACGGGCTATA 57.694 36.000 0.00 0.00 0.00 1.31
1113 1126 2.575735 TGACCATGGTATGCTTCCAGAA 59.424 45.455 19.80 0.00 38.42 3.02
1116 1129 1.915489 AGTGACCATGGTATGCTTCCA 59.085 47.619 19.80 6.74 39.41 3.53
1142 1155 4.698583 ATGACTCTCATTGCTTTCAAGC 57.301 40.909 4.48 4.48 40.00 4.01
1169 1182 7.404671 TCAAAATCATAGCCTAACCTTTTCC 57.595 36.000 0.00 0.00 0.00 3.13
1172 1185 6.731467 TCCTCAAAATCATAGCCTAACCTTT 58.269 36.000 0.00 0.00 0.00 3.11
1174 1187 5.667626 TCTCCTCAAAATCATAGCCTAACCT 59.332 40.000 0.00 0.00 0.00 3.50
1178 1191 7.379059 TCATTCTCCTCAAAATCATAGCCTA 57.621 36.000 0.00 0.00 0.00 3.93
1188 1201 7.689299 TCACCTCTAAATCATTCTCCTCAAAA 58.311 34.615 0.00 0.00 0.00 2.44
1190 1203 6.441924 ACTCACCTCTAAATCATTCTCCTCAA 59.558 38.462 0.00 0.00 0.00 3.02
1195 1208 8.729805 AAATCACTCACCTCTAAATCATTCTC 57.270 34.615 0.00 0.00 0.00 2.87
1196 1209 8.954350 CAAAATCACTCACCTCTAAATCATTCT 58.046 33.333 0.00 0.00 0.00 2.40
1197 1210 8.950210 TCAAAATCACTCACCTCTAAATCATTC 58.050 33.333 0.00 0.00 0.00 2.67
1202 1219 7.020827 TCCTCAAAATCACTCACCTCTAAAT 57.979 36.000 0.00 0.00 0.00 1.40
1204 1221 5.780282 TCTCCTCAAAATCACTCACCTCTAA 59.220 40.000 0.00 0.00 0.00 2.10
1206 1223 4.163427 TCTCCTCAAAATCACTCACCTCT 58.837 43.478 0.00 0.00 0.00 3.69
1211 1228 4.564782 ATGCTCTCCTCAAAATCACTCA 57.435 40.909 0.00 0.00 0.00 3.41
1242 1259 2.097791 GTCACGTGTTTGGCCTTTTGTA 59.902 45.455 16.51 0.00 0.00 2.41
1282 1299 3.567478 ATCAAGATTCACCACTAGCCC 57.433 47.619 0.00 0.00 0.00 5.19
1347 1364 2.892025 GGTGAGCCCAATCAGCAAT 58.108 52.632 1.32 0.00 45.03 3.56
1462 1479 3.698040 CCAGATGGGATTTCACCAGAAAG 59.302 47.826 0.00 0.00 46.13 2.62
1482 1499 2.972713 AGAGGTTAGAGCTGACAAACCA 59.027 45.455 14.94 0.00 43.14 3.67
1506 1523 5.483685 TGTATGACAGGTTCAAGTAGCTT 57.516 39.130 0.00 0.00 37.92 3.74
1543 1560 2.231380 GGGGCCCGGATGGTATCAT 61.231 63.158 17.79 0.00 36.04 2.45
1635 1652 5.010933 TCAGTAGTACTAGCAGAGCAGTTT 58.989 41.667 1.87 0.00 0.00 2.66
1667 1684 3.329386 ACATCTTCATGGTCGACACTTG 58.671 45.455 18.91 14.20 33.82 3.16
1698 1716 4.846367 CCCATCCCAAGGTAGAGATATGAA 59.154 45.833 0.00 0.00 0.00 2.57
1771 1789 2.079925 AGCAATCGTCCAGCTTCTTTC 58.920 47.619 0.00 0.00 34.37 2.62
1772 1790 2.191128 AGCAATCGTCCAGCTTCTTT 57.809 45.000 0.00 0.00 34.37 2.52
1773 1791 2.191128 AAGCAATCGTCCAGCTTCTT 57.809 45.000 0.00 0.00 44.67 2.52
1783 1801 4.471904 TGATCTGGAAGTAAGCAATCGT 57.528 40.909 0.00 0.00 33.76 3.73
1809 1827 7.865889 CGTACATAAACCTCATCATACAGCTTA 59.134 37.037 0.00 0.00 0.00 3.09
1892 1910 2.483745 CGCACATGAAGCAGGCTG 59.516 61.111 10.94 10.94 0.00 4.85
1909 1928 1.066286 ACATCTCTCAGCAGTTCAGCC 60.066 52.381 0.00 0.00 34.23 4.85
1921 1940 9.509855 CTCACAAAGTACTAACATACATCTCTC 57.490 37.037 0.00 0.00 0.00 3.20
1988 2019 5.810080 ACCTAATAATAGCACCAGAGACC 57.190 43.478 0.00 0.00 0.00 3.85
1991 2022 6.919775 AGGTACCTAATAATAGCACCAGAG 57.080 41.667 14.41 0.00 36.16 3.35
2009 2040 3.243336 CTCGATGCGCCTTTATAGGTAC 58.757 50.000 4.18 0.00 44.00 3.34
2041 2108 7.338800 ACAAGCCATCTTACAGAATTTATGG 57.661 36.000 0.00 0.00 37.52 2.74
2042 2109 8.680903 AGAACAAGCCATCTTACAGAATTTATG 58.319 33.333 0.00 0.00 0.00 1.90
2047 2114 9.905713 TTTATAGAACAAGCCATCTTACAGAAT 57.094 29.630 0.00 0.00 0.00 2.40
2050 2117 8.492673 TGTTTATAGAACAAGCCATCTTACAG 57.507 34.615 0.00 0.00 0.00 2.74
2060 2127 6.927294 ACATAGGCTGTTTATAGAACAAGC 57.073 37.500 0.00 0.00 32.90 4.01
2076 2143 6.163135 ACAACCAGACTAGAATACATAGGC 57.837 41.667 0.00 0.00 0.00 3.93
2079 2146 8.959548 TCGTTTACAACCAGACTAGAATACATA 58.040 33.333 0.00 0.00 0.00 2.29
2080 2147 7.758528 GTCGTTTACAACCAGACTAGAATACAT 59.241 37.037 0.00 0.00 0.00 2.29
2081 2148 7.086376 GTCGTTTACAACCAGACTAGAATACA 58.914 38.462 0.00 0.00 0.00 2.29
2082 2149 7.061557 GTGTCGTTTACAACCAGACTAGAATAC 59.938 40.741 0.00 0.00 40.63 1.89
2092 2159 6.664515 ACATTATTGTGTCGTTTACAACCAG 58.335 36.000 0.00 0.00 40.63 4.00
2093 2160 6.621316 ACATTATTGTGTCGTTTACAACCA 57.379 33.333 0.00 0.00 40.63 3.67
2095 2162 7.266756 CGGTTACATTATTGTGTCGTTTACAAC 59.733 37.037 0.48 0.00 40.63 3.32
2097 2164 6.618166 GCGGTTACATTATTGTGTCGTTTACA 60.618 38.462 0.48 0.00 36.53 2.41
2098 2165 5.729424 GCGGTTACATTATTGTGTCGTTTAC 59.271 40.000 0.48 0.00 36.53 2.01
2104 2171 2.538132 GCCGCGGTTACATTATTGTGTC 60.538 50.000 28.70 0.00 36.53 3.67
2106 2173 1.398739 TGCCGCGGTTACATTATTGTG 59.601 47.619 28.70 0.00 36.53 3.33
2112 2179 1.740297 TAATGTGCCGCGGTTACATT 58.260 45.000 39.04 39.04 44.54 2.71
2121 2188 3.374745 CAGGATTCAAATAATGTGCCGC 58.625 45.455 0.00 0.00 0.00 6.53
2122 2189 3.381272 ACCAGGATTCAAATAATGTGCCG 59.619 43.478 0.00 0.00 0.00 5.69
2123 2190 4.402155 TCACCAGGATTCAAATAATGTGCC 59.598 41.667 0.00 0.00 0.00 5.01
2124 2191 5.581126 TCACCAGGATTCAAATAATGTGC 57.419 39.130 0.00 0.00 0.00 4.57
2125 2192 6.982141 CCATTCACCAGGATTCAAATAATGTG 59.018 38.462 0.00 0.00 0.00 3.21
2126 2193 6.896860 TCCATTCACCAGGATTCAAATAATGT 59.103 34.615 0.00 0.00 0.00 2.71
2127 2194 7.350744 TCCATTCACCAGGATTCAAATAATG 57.649 36.000 0.00 0.00 0.00 1.90
2128 2195 7.976414 TTCCATTCACCAGGATTCAAATAAT 57.024 32.000 0.00 0.00 33.10 1.28
2129 2196 7.976414 ATTCCATTCACCAGGATTCAAATAA 57.024 32.000 0.00 0.00 33.10 1.40
2131 2198 6.896860 TGTATTCCATTCACCAGGATTCAAAT 59.103 34.615 0.00 0.00 33.10 2.32
2132 2199 6.252233 TGTATTCCATTCACCAGGATTCAAA 58.748 36.000 0.00 0.00 33.10 2.69
2135 2202 7.227156 AGTATGTATTCCATTCACCAGGATTC 58.773 38.462 0.00 0.00 34.86 2.52
2136 2203 7.154191 AGTATGTATTCCATTCACCAGGATT 57.846 36.000 0.00 0.00 34.86 3.01
2137 2204 6.770286 AGTATGTATTCCATTCACCAGGAT 57.230 37.500 0.00 0.00 34.86 3.24
2138 2205 7.292356 ACATAGTATGTATTCCATTCACCAGGA 59.708 37.037 14.25 0.00 42.78 3.86
2139 2206 7.388776 CACATAGTATGTATTCCATTCACCAGG 59.611 40.741 15.38 0.00 42.70 4.45
2140 2207 7.095060 GCACATAGTATGTATTCCATTCACCAG 60.095 40.741 15.38 0.02 42.70 4.00
2141 2208 6.710295 GCACATAGTATGTATTCCATTCACCA 59.290 38.462 15.38 0.00 42.70 4.17
2142 2209 6.710295 TGCACATAGTATGTATTCCATTCACC 59.290 38.462 15.38 0.00 42.70 4.02
2143 2210 7.728847 TGCACATAGTATGTATTCCATTCAC 57.271 36.000 15.38 0.00 42.70 3.18
2150 2217 8.266682 CGTAGTTGTTGCACATAGTATGTATTC 58.733 37.037 15.38 8.53 42.70 1.75
2161 2228 4.570772 GGTCATATCGTAGTTGTTGCACAT 59.429 41.667 0.00 0.00 0.00 3.21
2168 2235 8.475639 AGATACAAAAGGTCATATCGTAGTTGT 58.524 33.333 0.00 0.00 0.00 3.32
2179 2246 4.702131 GTCTGCCAAGATACAAAAGGTCAT 59.298 41.667 0.00 0.00 34.13 3.06
2180 2247 4.072131 GTCTGCCAAGATACAAAAGGTCA 58.928 43.478 0.00 0.00 34.13 4.02
2181 2248 4.072131 TGTCTGCCAAGATACAAAAGGTC 58.928 43.478 0.00 0.00 34.13 3.85
2182 2249 4.098914 TGTCTGCCAAGATACAAAAGGT 57.901 40.909 0.00 0.00 34.13 3.50
2184 2251 6.258230 TGAATGTCTGCCAAGATACAAAAG 57.742 37.500 0.00 0.00 34.13 2.27
2186 2253 5.769662 AGTTGAATGTCTGCCAAGATACAAA 59.230 36.000 0.00 0.00 34.13 2.83
2189 2256 4.937620 TGAGTTGAATGTCTGCCAAGATAC 59.062 41.667 0.00 0.00 34.13 2.24
2201 2268 4.973168 AGTGTATGGTGTGAGTTGAATGT 58.027 39.130 0.00 0.00 0.00 2.71
2202 2269 5.121298 CAGAGTGTATGGTGTGAGTTGAATG 59.879 44.000 0.00 0.00 0.00 2.67
2204 2271 4.503123 CCAGAGTGTATGGTGTGAGTTGAA 60.503 45.833 0.00 0.00 32.85 2.69
2206 2273 3.329386 CCAGAGTGTATGGTGTGAGTTG 58.671 50.000 0.00 0.00 32.85 3.16
2216 2283 4.569943 AGCACTAACAACCAGAGTGTATG 58.430 43.478 3.46 0.00 42.14 2.39
2217 2284 4.283467 TGAGCACTAACAACCAGAGTGTAT 59.717 41.667 3.46 0.00 42.14 2.29
2231 2298 3.515502 ACAAGGATACAGCTGAGCACTAA 59.484 43.478 23.35 0.00 41.41 2.24
2234 2301 2.275318 GACAAGGATACAGCTGAGCAC 58.725 52.381 23.35 7.91 41.41 4.40
2239 2306 3.068873 GGTAGAGGACAAGGATACAGCTG 59.931 52.174 13.48 13.48 41.41 4.24
2251 2318 1.043116 CAGGGCATCGGTAGAGGACA 61.043 60.000 0.00 0.00 38.07 4.02
2252 2319 1.742768 CAGGGCATCGGTAGAGGAC 59.257 63.158 0.00 0.00 34.97 3.85
2253 2320 1.457643 CCAGGGCATCGGTAGAGGA 60.458 63.158 0.00 0.00 0.00 3.71
2254 2321 0.833834 ATCCAGGGCATCGGTAGAGG 60.834 60.000 0.00 0.00 0.00 3.69
2255 2322 1.924731 TATCCAGGGCATCGGTAGAG 58.075 55.000 0.00 0.00 0.00 2.43
2256 2323 2.391926 TTATCCAGGGCATCGGTAGA 57.608 50.000 0.00 0.00 0.00 2.59
2258 2325 3.007940 CAGATTTATCCAGGGCATCGGTA 59.992 47.826 0.00 0.00 0.00 4.02
2259 2326 2.057922 AGATTTATCCAGGGCATCGGT 58.942 47.619 0.00 0.00 0.00 4.69
2260 2327 2.430465 CAGATTTATCCAGGGCATCGG 58.570 52.381 0.00 0.00 0.00 4.18
2261 2328 1.808945 GCAGATTTATCCAGGGCATCG 59.191 52.381 0.00 0.00 0.00 3.84
2262 2329 3.151912 AGCAGATTTATCCAGGGCATC 57.848 47.619 0.00 0.00 0.00 3.91
2263 2330 3.395607 TGTAGCAGATTTATCCAGGGCAT 59.604 43.478 0.00 0.00 0.00 4.40
2264 2331 2.777114 TGTAGCAGATTTATCCAGGGCA 59.223 45.455 0.00 0.00 0.00 5.36
2265 2332 3.492102 TGTAGCAGATTTATCCAGGGC 57.508 47.619 0.00 0.00 0.00 5.19
2281 2348 8.093307 AGAATAACACCTGATATCTGCATGTAG 58.907 37.037 4.14 4.14 0.00 2.74
2292 2371 6.604396 TCGGAGTTACAGAATAACACCTGATA 59.396 38.462 10.31 0.00 36.47 2.15
2300 2379 6.618811 TCAGAGTTCGGAGTTACAGAATAAC 58.381 40.000 0.00 0.00 35.45 1.89
2301 2380 6.829229 TCAGAGTTCGGAGTTACAGAATAA 57.171 37.500 0.00 0.00 35.45 1.40
2302 2381 6.625300 GCTTCAGAGTTCGGAGTTACAGAATA 60.625 42.308 0.00 0.00 35.45 1.75
2303 2382 5.715070 CTTCAGAGTTCGGAGTTACAGAAT 58.285 41.667 0.00 0.00 35.45 2.40
2315 4720 0.581529 TGCGTTTGCTTCAGAGTTCG 59.418 50.000 0.00 0.00 43.34 3.95
2317 4722 1.335324 GCATGCGTTTGCTTCAGAGTT 60.335 47.619 0.00 0.00 43.34 3.01
2318 4723 0.239347 GCATGCGTTTGCTTCAGAGT 59.761 50.000 0.00 0.00 43.34 3.24
2353 4758 3.133721 CCAACACCAAAATTCAGTCCCAA 59.866 43.478 0.00 0.00 0.00 4.12
2372 4777 1.350684 TCTGTATCAGCTTGCACCCAA 59.649 47.619 0.00 0.00 0.00 4.12
2407 4818 1.367346 TGGCCTTCCAGATGGTACAA 58.633 50.000 3.32 0.00 39.02 2.41
2422 4833 1.068588 GGAACAAACCTGAAGTTGGCC 59.931 52.381 0.00 0.00 39.19 5.36
2427 4838 4.658901 TCTTAGGAGGAACAAACCTGAAGT 59.341 41.667 0.00 0.00 40.73 3.01
2442 4853 4.837860 ACATCTATGGAGGCTTCTTAGGAG 59.162 45.833 14.03 10.00 0.00 3.69
2443 4854 4.820775 ACATCTATGGAGGCTTCTTAGGA 58.179 43.478 14.03 3.93 0.00 2.94
2447 4858 2.366916 CGGACATCTATGGAGGCTTCTT 59.633 50.000 0.00 0.00 0.00 2.52
2448 4859 1.967066 CGGACATCTATGGAGGCTTCT 59.033 52.381 0.00 0.00 0.00 2.85
2457 4868 1.371758 CGACCCGCGGACATCTATG 60.372 63.158 30.73 9.82 36.03 2.23
2481 4892 3.974757 CGGATCTACCCCGGCGAC 61.975 72.222 9.30 0.00 43.05 5.19
2487 4898 0.896226 GCCATCTACGGATCTACCCC 59.104 60.000 0.00 0.00 34.64 4.95
2488 4899 1.926108 AGCCATCTACGGATCTACCC 58.074 55.000 0.00 0.00 34.64 3.69
2489 4900 3.069729 ACAAAGCCATCTACGGATCTACC 59.930 47.826 0.00 0.00 0.00 3.18
2490 4901 4.299978 GACAAAGCCATCTACGGATCTAC 58.700 47.826 0.00 0.00 0.00 2.59
2491 4902 3.004419 CGACAAAGCCATCTACGGATCTA 59.996 47.826 0.00 0.00 0.00 1.98
2492 4903 2.223829 CGACAAAGCCATCTACGGATCT 60.224 50.000 0.00 0.00 0.00 2.75
2493 4904 2.128035 CGACAAAGCCATCTACGGATC 58.872 52.381 0.00 0.00 0.00 3.36
2494 4905 1.806623 GCGACAAAGCCATCTACGGAT 60.807 52.381 0.00 0.00 0.00 4.18
2495 4906 0.459585 GCGACAAAGCCATCTACGGA 60.460 55.000 0.00 0.00 0.00 4.69
2496 4907 0.460284 AGCGACAAAGCCATCTACGG 60.460 55.000 0.00 0.00 38.01 4.02
2497 4908 0.647410 CAGCGACAAAGCCATCTACG 59.353 55.000 0.00 0.00 38.01 3.51
2501 4912 2.486966 GCCAGCGACAAAGCCATC 59.513 61.111 0.00 0.00 38.01 3.51
2518 4929 1.214062 GTCACCTGCAGAGGAGTCG 59.786 63.158 17.39 0.00 42.93 4.18
2519 4930 1.214062 CGTCACCTGCAGAGGAGTC 59.786 63.158 17.39 0.49 42.93 3.36
2520 4931 0.827925 TTCGTCACCTGCAGAGGAGT 60.828 55.000 17.39 0.49 42.93 3.85
2528 4939 0.666274 TCGTCATGTTCGTCACCTGC 60.666 55.000 11.25 0.00 0.00 4.85
2530 4941 1.935300 GCTTCGTCATGTTCGTCACCT 60.935 52.381 11.25 0.00 0.00 4.00
2533 4944 0.032815 TGGCTTCGTCATGTTCGTCA 59.967 50.000 11.25 5.58 0.00 4.35
2539 4950 1.078848 GGCTCTGGCTTCGTCATGT 60.079 57.895 0.00 0.00 38.73 3.21
2544 4955 1.185618 TGTAGTGGCTCTGGCTTCGT 61.186 55.000 0.00 0.00 38.73 3.85
2545 4956 0.459237 CTGTAGTGGCTCTGGCTTCG 60.459 60.000 0.00 0.00 38.73 3.79
2546 4957 0.898320 TCTGTAGTGGCTCTGGCTTC 59.102 55.000 0.00 0.00 38.73 3.86
2547 4958 1.002544 GTTCTGTAGTGGCTCTGGCTT 59.997 52.381 0.00 0.00 38.73 4.35
2609 5029 3.922171 AATTGTTGCAAAACCCTTCCA 57.078 38.095 0.00 0.00 0.00 3.53
2628 5048 0.965439 CCCCTGTGCCGAATTTGAAA 59.035 50.000 0.00 0.00 0.00 2.69
2635 5055 0.693622 TGTATTTCCCCTGTGCCGAA 59.306 50.000 0.00 0.00 0.00 4.30
2637 5057 0.035439 ACTGTATTTCCCCTGTGCCG 60.035 55.000 0.00 0.00 0.00 5.69
2639 5059 2.789409 AGACTGTATTTCCCCTGTGC 57.211 50.000 0.00 0.00 0.00 4.57
2642 5062 4.938226 GTGAAGAAGACTGTATTTCCCCTG 59.062 45.833 0.00 0.00 0.00 4.45
2648 5068 5.237815 TGCGATGTGAAGAAGACTGTATTT 58.762 37.500 0.00 0.00 0.00 1.40
2660 5080 3.313526 CCCCTATCTTTTGCGATGTGAAG 59.686 47.826 0.00 0.00 0.00 3.02
2701 5123 1.962807 TCGACCCCTTCTTAACAACGA 59.037 47.619 0.00 0.00 0.00 3.85
2705 5127 3.101437 TGCTATCGACCCCTTCTTAACA 58.899 45.455 0.00 0.00 0.00 2.41
2711 5133 2.910688 TTGATGCTATCGACCCCTTC 57.089 50.000 0.00 0.00 0.00 3.46
2717 5139 9.567848 TTTCCTTTTATTTTTGATGCTATCGAC 57.432 29.630 0.00 0.00 0.00 4.20
2722 5144 9.487790 CCTGTTTTCCTTTTATTTTTGATGCTA 57.512 29.630 0.00 0.00 0.00 3.49
2723 5145 7.445096 CCCTGTTTTCCTTTTATTTTTGATGCT 59.555 33.333 0.00 0.00 0.00 3.79
2724 5146 7.228507 ACCCTGTTTTCCTTTTATTTTTGATGC 59.771 33.333 0.00 0.00 0.00 3.91
2725 5147 8.675705 ACCCTGTTTTCCTTTTATTTTTGATG 57.324 30.769 0.00 0.00 0.00 3.07
2742 5164 8.395605 TCCCATTTCTTAGTATTTACCCTGTTT 58.604 33.333 0.00 0.00 0.00 2.83
2749 5171 9.945904 CCCTAGATCCCATTTCTTAGTATTTAC 57.054 37.037 0.00 0.00 0.00 2.01
2765 5187 1.416772 AGTTTAAGCGCCCTAGATCCC 59.583 52.381 2.29 0.00 0.00 3.85
2766 5188 2.158943 ACAGTTTAAGCGCCCTAGATCC 60.159 50.000 2.29 0.00 0.00 3.36
2767 5189 3.180891 ACAGTTTAAGCGCCCTAGATC 57.819 47.619 2.29 0.00 0.00 2.75
2768 5190 3.055385 TCAACAGTTTAAGCGCCCTAGAT 60.055 43.478 2.29 0.00 0.00 1.98
2769 5191 2.300723 TCAACAGTTTAAGCGCCCTAGA 59.699 45.455 2.29 0.00 0.00 2.43
2770 5192 2.673368 CTCAACAGTTTAAGCGCCCTAG 59.327 50.000 2.29 0.00 0.00 3.02
2771 5193 2.695359 CTCAACAGTTTAAGCGCCCTA 58.305 47.619 2.29 0.00 0.00 3.53
2772 5194 1.523758 CTCAACAGTTTAAGCGCCCT 58.476 50.000 2.29 0.00 0.00 5.19
2773 5195 0.109735 GCTCAACAGTTTAAGCGCCC 60.110 55.000 2.29 0.00 0.00 6.13
2774 5196 0.109735 GGCTCAACAGTTTAAGCGCC 60.110 55.000 2.29 0.53 35.58 6.53
2775 5197 0.591170 TGGCTCAACAGTTTAAGCGC 59.409 50.000 0.00 0.00 35.58 5.92
2776 5198 2.143122 TCTGGCTCAACAGTTTAAGCG 58.857 47.619 10.11 0.73 39.48 4.68
2777 5199 4.773323 AATCTGGCTCAACAGTTTAAGC 57.227 40.909 8.41 8.41 39.48 3.09
2778 5200 6.094603 AGCATAATCTGGCTCAACAGTTTAAG 59.905 38.462 0.00 0.00 36.67 1.85
2779 5201 5.945784 AGCATAATCTGGCTCAACAGTTTAA 59.054 36.000 0.00 0.00 36.67 1.52
2780 5202 5.500234 AGCATAATCTGGCTCAACAGTTTA 58.500 37.500 0.00 0.00 39.48 2.01
2781 5203 4.338879 AGCATAATCTGGCTCAACAGTTT 58.661 39.130 0.00 0.00 39.48 2.66
2782 5204 3.960571 AGCATAATCTGGCTCAACAGTT 58.039 40.909 0.00 0.00 39.48 3.16
2783 5205 3.641434 AGCATAATCTGGCTCAACAGT 57.359 42.857 0.00 0.00 39.48 3.55
2790 5212 0.839946 AACGGGAGCATAATCTGGCT 59.160 50.000 0.00 0.00 44.48 4.75
2791 5213 0.947244 CAACGGGAGCATAATCTGGC 59.053 55.000 0.00 0.00 0.00 4.85
2792 5214 2.332063 ACAACGGGAGCATAATCTGG 57.668 50.000 0.00 0.00 0.00 3.86
2793 5215 5.220854 CCTTAAACAACGGGAGCATAATCTG 60.221 44.000 0.00 0.00 0.00 2.90
2794 5216 4.881850 CCTTAAACAACGGGAGCATAATCT 59.118 41.667 0.00 0.00 0.00 2.40
2795 5217 4.638865 ACCTTAAACAACGGGAGCATAATC 59.361 41.667 0.00 0.00 0.00 1.75
2796 5218 4.398044 CACCTTAAACAACGGGAGCATAAT 59.602 41.667 0.00 0.00 0.00 1.28
2797 5219 3.754323 CACCTTAAACAACGGGAGCATAA 59.246 43.478 0.00 0.00 0.00 1.90
2798 5220 3.340034 CACCTTAAACAACGGGAGCATA 58.660 45.455 0.00 0.00 0.00 3.14
2799 5221 2.159382 CACCTTAAACAACGGGAGCAT 58.841 47.619 0.00 0.00 0.00 3.79
2800 5222 1.600023 CACCTTAAACAACGGGAGCA 58.400 50.000 0.00 0.00 0.00 4.26
2801 5223 0.240145 GCACCTTAAACAACGGGAGC 59.760 55.000 0.00 0.00 0.00 4.70
2802 5224 0.879090 GGCACCTTAAACAACGGGAG 59.121 55.000 0.00 0.00 0.00 4.30
2803 5225 3.024431 GGCACCTTAAACAACGGGA 57.976 52.632 0.00 0.00 0.00 5.14
2816 5238 5.007682 TCTGTTTAAACATCTTAGGGCACC 58.992 41.667 20.83 0.00 44.30 5.01
2817 5239 6.555315 CATCTGTTTAAACATCTTAGGGCAC 58.445 40.000 20.83 0.00 38.41 5.01
2818 5240 5.125417 GCATCTGTTTAAACATCTTAGGGCA 59.875 40.000 20.83 0.00 38.41 5.36
2819 5241 5.450550 GGCATCTGTTTAAACATCTTAGGGC 60.451 44.000 20.83 15.57 38.41 5.19
2820 5242 5.888161 AGGCATCTGTTTAAACATCTTAGGG 59.112 40.000 20.83 8.14 38.41 3.53
2821 5243 6.599244 TCAGGCATCTGTTTAAACATCTTAGG 59.401 38.462 20.83 8.82 41.59 2.69
2822 5244 7.615582 TCAGGCATCTGTTTAAACATCTTAG 57.384 36.000 20.83 9.51 41.59 2.18
2823 5245 7.828717 TGATCAGGCATCTGTTTAAACATCTTA 59.171 33.333 20.83 8.12 41.59 2.10
2824 5246 6.660521 TGATCAGGCATCTGTTTAAACATCTT 59.339 34.615 20.83 6.73 41.59 2.40
2825 5247 6.182627 TGATCAGGCATCTGTTTAAACATCT 58.817 36.000 20.83 8.94 41.59 2.90
2826 5248 6.441093 TGATCAGGCATCTGTTTAAACATC 57.559 37.500 20.83 12.47 41.59 3.06
2827 5249 5.359009 CCTGATCAGGCATCTGTTTAAACAT 59.641 40.000 28.45 5.06 42.44 2.71
2828 5250 4.701651 CCTGATCAGGCATCTGTTTAAACA 59.298 41.667 28.45 19.53 42.44 2.83
2829 5251 5.240713 CCTGATCAGGCATCTGTTTAAAC 57.759 43.478 28.45 11.54 42.44 2.01
2849 5271 1.915489 TGCATGTGATCCAGGTTACCT 59.085 47.619 0.00 0.00 0.00 3.08
2850 5272 2.418368 TGCATGTGATCCAGGTTACC 57.582 50.000 0.00 0.00 0.00 2.85
2851 5273 3.813443 AGATGCATGTGATCCAGGTTAC 58.187 45.455 2.46 0.00 0.00 2.50
2852 5274 5.628797 TTAGATGCATGTGATCCAGGTTA 57.371 39.130 2.46 0.00 0.00 2.85
2853 5275 4.508551 TTAGATGCATGTGATCCAGGTT 57.491 40.909 2.46 0.00 0.00 3.50
2854 5276 4.719026 ATTAGATGCATGTGATCCAGGT 57.281 40.909 2.46 0.00 0.00 4.00
2855 5277 7.698506 AAATATTAGATGCATGTGATCCAGG 57.301 36.000 2.46 0.00 0.00 4.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.