Multiple sequence alignment - TraesCS4A01G304500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G304500 chr4A 100.000 7497 0 0 1 7497 599886495 599893991 0.000000e+00 13845.0
1 TraesCS4A01G304500 chr4A 87.919 745 56 24 6779 7497 599732995 599732259 0.000000e+00 846.0
2 TraesCS4A01G304500 chr4A 86.490 755 70 19 6768 7497 600387004 600387751 0.000000e+00 800.0
3 TraesCS4A01G304500 chr4A 79.304 546 71 20 5530 6049 590380267 590380796 2.000000e-90 344.0
4 TraesCS4A01G304500 chr4A 79.443 287 32 7 5281 5566 590380007 590380267 2.150000e-40 178.0
5 TraesCS4A01G304500 chr4A 90.909 88 8 0 6044 6131 599892496 599892583 1.320000e-22 119.0
6 TraesCS4A01G304500 chr4A 90.909 88 8 0 6002 6089 599892538 599892625 1.320000e-22 119.0
7 TraesCS4A01G304500 chr4B 94.193 4219 173 34 1666 5863 4525797 4521630 0.000000e+00 6368.0
8 TraesCS4A01G304500 chr4B 89.198 1833 115 50 5719 7497 4521481 4519678 0.000000e+00 2211.0
9 TraesCS4A01G304500 chr4B 89.546 727 39 13 976 1669 4526800 4526078 0.000000e+00 887.0
10 TraesCS4A01G304500 chr4B 88.677 733 65 10 6778 7497 4708296 4709023 0.000000e+00 878.0
11 TraesCS4A01G304500 chr4B 82.402 358 42 4 5167 5519 22721308 22721649 7.360000e-75 292.0
12 TraesCS4A01G304500 chr4B 92.941 85 6 0 6005 6089 4521138 4521054 2.840000e-24 124.0
13 TraesCS4A01G304500 chr4B 92.958 71 5 0 617 687 4527470 4527400 3.700000e-18 104.0
14 TraesCS4A01G304500 chr4D 97.436 3471 70 6 1875 5334 4129713 4133175 0.000000e+00 5899.0
15 TraesCS4A01G304500 chr4D 91.998 2112 113 30 5398 7479 4133175 4135260 0.000000e+00 2913.0
16 TraesCS4A01G304500 chr4D 91.692 987 67 7 1383 2368 465588531 465587559 0.000000e+00 1354.0
17 TraesCS4A01G304500 chr4D 87.426 1177 85 21 687 1821 4128557 4129712 0.000000e+00 1295.0
18 TraesCS4A01G304500 chr4D 88.451 1091 74 30 6447 7497 3860117 3859039 0.000000e+00 1269.0
19 TraesCS4A01G304500 chr4D 90.615 618 40 9 1328 1943 50353596 50352995 0.000000e+00 804.0
20 TraesCS4A01G304500 chr4D 93.548 310 19 1 2567 2875 465578614 465578305 1.910000e-125 460.0
21 TraesCS4A01G304500 chr4D 89.776 313 29 3 6778 7087 3950033 3949721 1.520000e-106 398.0
22 TraesCS4A01G304500 chr4D 83.051 295 31 11 7206 7497 3930902 3930624 4.490000e-62 250.0
23 TraesCS4A01G304500 chr4D 92.025 163 12 1 2410 2572 465587555 465587394 2.100000e-55 228.0
24 TraesCS4A01G304500 chr4D 90.625 160 9 3 1048 1205 50353794 50353639 2.740000e-49 207.0
25 TraesCS4A01G304500 chr4D 90.909 88 8 0 6044 6131 4133782 4133869 1.320000e-22 119.0
26 TraesCS4A01G304500 chr4D 95.588 68 3 0 6002 6069 4133824 4133891 7.950000e-20 110.0
27 TraesCS4A01G304500 chr6B 91.169 1857 106 29 1048 2875 438296977 438298804 0.000000e+00 2468.0
28 TraesCS4A01G304500 chr6B 90.318 1446 88 23 1048 2465 713143568 713142147 0.000000e+00 1847.0
29 TraesCS4A01G304500 chr6B 89.593 615 47 8 1330 1943 681266324 681265726 0.000000e+00 765.0
30 TraesCS4A01G304500 chr6B 91.391 151 9 2 1050 1200 681266523 681266377 3.550000e-48 204.0
31 TraesCS4A01G304500 chr7D 91.831 1677 108 14 1205 2876 39493901 39492249 0.000000e+00 2311.0
32 TraesCS4A01G304500 chr7D 91.525 118 6 4 237 351 25494157 25494041 7.790000e-35 159.0
33 TraesCS4A01G304500 chr2B 90.129 618 43 9 1328 1943 485754077 485754678 0.000000e+00 787.0
34 TraesCS4A01G304500 chr2B 91.892 148 8 2 1050 1197 485753881 485754024 3.550000e-48 204.0
35 TraesCS4A01G304500 chr2B 88.710 124 10 4 2 123 649141555 649141434 1.690000e-31 148.0
36 TraesCS4A01G304500 chr2B 88.525 122 10 4 4 123 222674778 222674897 2.180000e-30 145.0
37 TraesCS4A01G304500 chr3A 82.520 881 107 29 1665 2510 72692124 72692992 0.000000e+00 730.0
38 TraesCS4A01G304500 chr3A 81.828 886 109 30 1665 2513 705927253 705926383 0.000000e+00 697.0
39 TraesCS4A01G304500 chr1D 82.187 887 107 28 1665 2513 481043068 481042195 0.000000e+00 715.0
40 TraesCS4A01G304500 chr1D 85.714 112 13 2 240 350 435295910 435296019 1.710000e-21 115.0
41 TraesCS4A01G304500 chr1D 91.803 61 4 1 237 296 458882779 458882839 4.820000e-12 84.2
42 TraesCS4A01G304500 chr7A 91.365 498 33 5 1330 1826 117675725 117676213 0.000000e+00 673.0
43 TraesCS4A01G304500 chr7A 91.333 150 9 2 1048 1197 117675524 117675669 1.280000e-47 202.0
44 TraesCS4A01G304500 chr5B 84.088 729 74 21 6772 7483 641332771 641333474 0.000000e+00 665.0
45 TraesCS4A01G304500 chr5B 88.618 123 12 2 2 123 261538450 261538329 1.690000e-31 148.0
46 TraesCS4A01G304500 chr5B 87.805 123 13 2 2 123 610001593 610001472 7.840000e-30 143.0
47 TraesCS4A01G304500 chr5B 83.168 101 14 3 237 335 390135980 390135881 1.040000e-13 89.8
48 TraesCS4A01G304500 chr3B 88.618 123 12 2 2 123 725789846 725789967 1.690000e-31 148.0
49 TraesCS4A01G304500 chr3B 87.903 124 11 4 2 123 593324132 593324011 7.840000e-30 143.0
50 TraesCS4A01G304500 chr7B 87.903 124 11 4 2 123 291519582 291519703 7.840000e-30 143.0
51 TraesCS4A01G304500 chr2D 87.805 123 13 2 2 123 614522706 614522585 7.840000e-30 143.0
52 TraesCS4A01G304500 chr2D 84.167 120 13 6 233 351 33852806 33852920 2.210000e-20 111.0
53 TraesCS4A01G304500 chr1B 87.903 124 11 4 2 123 97832033 97832154 7.840000e-30 143.0
54 TraesCS4A01G304500 chr1B 80.769 104 17 2 233 335 451069176 451069277 2.240000e-10 78.7
55 TraesCS4A01G304500 chrUn 92.405 79 6 0 1048 1126 79238803 79238725 6.150000e-21 113.0
56 TraesCS4A01G304500 chr5A 83.168 101 14 3 237 335 435247728 435247629 1.040000e-13 89.8
57 TraesCS4A01G304500 chr1A 97.727 44 1 0 233 276 474295491 474295448 8.070000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G304500 chr4A 599886495 599893991 7496 False 4694.333333 13845 93.939333 1 7497 3 chr4A.!!$F3 7496
1 TraesCS4A01G304500 chr4A 599732259 599732995 736 True 846.000000 846 87.919000 6779 7497 1 chr4A.!!$R1 718
2 TraesCS4A01G304500 chr4A 600387004 600387751 747 False 800.000000 800 86.490000 6768 7497 1 chr4A.!!$F1 729
3 TraesCS4A01G304500 chr4A 590380007 590380796 789 False 261.000000 344 79.373500 5281 6049 2 chr4A.!!$F2 768
4 TraesCS4A01G304500 chr4B 4519678 4527470 7792 True 1938.800000 6368 91.767200 617 7497 5 chr4B.!!$R1 6880
5 TraesCS4A01G304500 chr4B 4708296 4709023 727 False 878.000000 878 88.677000 6778 7497 1 chr4B.!!$F1 719
6 TraesCS4A01G304500 chr4D 4128557 4135260 6703 False 2067.200000 5899 92.671400 687 7479 5 chr4D.!!$F1 6792
7 TraesCS4A01G304500 chr4D 3859039 3860117 1078 True 1269.000000 1269 88.451000 6447 7497 1 chr4D.!!$R1 1050
8 TraesCS4A01G304500 chr4D 465587394 465588531 1137 True 791.000000 1354 91.858500 1383 2572 2 chr4D.!!$R6 1189
9 TraesCS4A01G304500 chr4D 50352995 50353794 799 True 505.500000 804 90.620000 1048 1943 2 chr4D.!!$R5 895
10 TraesCS4A01G304500 chr6B 438296977 438298804 1827 False 2468.000000 2468 91.169000 1048 2875 1 chr6B.!!$F1 1827
11 TraesCS4A01G304500 chr6B 713142147 713143568 1421 True 1847.000000 1847 90.318000 1048 2465 1 chr6B.!!$R1 1417
12 TraesCS4A01G304500 chr6B 681265726 681266523 797 True 484.500000 765 90.492000 1050 1943 2 chr6B.!!$R2 893
13 TraesCS4A01G304500 chr7D 39492249 39493901 1652 True 2311.000000 2311 91.831000 1205 2876 1 chr7D.!!$R2 1671
14 TraesCS4A01G304500 chr2B 485753881 485754678 797 False 495.500000 787 91.010500 1050 1943 2 chr2B.!!$F2 893
15 TraesCS4A01G304500 chr3A 72692124 72692992 868 False 730.000000 730 82.520000 1665 2510 1 chr3A.!!$F1 845
16 TraesCS4A01G304500 chr3A 705926383 705927253 870 True 697.000000 697 81.828000 1665 2513 1 chr3A.!!$R1 848
17 TraesCS4A01G304500 chr1D 481042195 481043068 873 True 715.000000 715 82.187000 1665 2513 1 chr1D.!!$R1 848
18 TraesCS4A01G304500 chr7A 117675524 117676213 689 False 437.500000 673 91.349000 1048 1826 2 chr7A.!!$F1 778
19 TraesCS4A01G304500 chr5B 641332771 641333474 703 False 665.000000 665 84.088000 6772 7483 1 chr5B.!!$F1 711

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
112 113 0.032130 TGCGACGGATTGCTAGATCC 59.968 55.000 0.00 0.00 41.82 3.36 F
468 469 0.109319 CCGCTTTACATTGCCACCAC 60.109 55.000 0.00 0.00 0.00 4.16 F
503 504 0.318360 TCGTCCTGTAGCAACACACG 60.318 55.000 0.00 0.00 37.82 4.49 F
504 505 0.596600 CGTCCTGTAGCAACACACGT 60.597 55.000 0.00 0.00 34.36 4.49 F
2141 2827 0.392863 TGCTGGCTACAATGCGTGAT 60.393 50.000 0.00 0.00 0.00 3.06 F
2809 3504 2.566724 TGAAGGCCATTGGTCAAAATCC 59.433 45.455 10.50 0.00 0.00 3.01 F
3989 4684 1.245732 AGATCATCCTACGGTACCGC 58.754 55.000 33.62 14.07 44.19 5.68 F
4720 5426 1.345089 CCTCTCCAGATGAGGCATCAG 59.655 57.143 7.33 2.01 43.67 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1203 1528 0.602562 CAAGCCAAAGCCGAATTCCA 59.397 50.000 0.00 0.0 41.25 3.53 R
1500 1850 1.695893 CTCACACGCTTATGCACGGG 61.696 60.000 0.00 0.0 39.64 5.28 R
1556 1907 1.914634 AGCTTATGCAGAGAACGACG 58.085 50.000 3.16 0.0 42.74 5.12 R
2496 3191 2.079925 GACTAACAAAGGCAGCTCTGG 58.920 52.381 0.00 0.0 31.12 3.86 R
3657 4352 0.469892 CTGCAGGAACTTTTGGGGGT 60.470 55.000 5.57 0.0 34.60 4.95 R
4756 5462 0.250467 GCAGCAAGGTGAACTGAGGA 60.250 55.000 3.05 0.0 33.10 3.71 R
5822 6908 1.862806 GAAGAGCGCAACTGACACC 59.137 57.895 11.47 0.0 0.00 4.16 R
6598 7741 0.250467 TTGCTTCTGCTCCACTCACC 60.250 55.000 0.00 0.0 40.48 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.126001 TGAACAACCAGGTGTCAGATC 57.874 47.619 0.00 0.00 0.00 2.75
21 22 2.224523 TGAACAACCAGGTGTCAGATCC 60.225 50.000 0.00 0.00 0.00 3.36
22 23 0.693049 ACAACCAGGTGTCAGATCCC 59.307 55.000 0.00 0.00 0.00 3.85
23 24 0.692476 CAACCAGGTGTCAGATCCCA 59.308 55.000 0.00 0.00 0.00 4.37
24 25 0.693049 AACCAGGTGTCAGATCCCAC 59.307 55.000 0.00 0.00 0.00 4.61
25 26 1.219124 CCAGGTGTCAGATCCCACG 59.781 63.158 0.00 0.00 32.30 4.94
26 27 1.544825 CCAGGTGTCAGATCCCACGT 61.545 60.000 0.00 0.00 32.30 4.49
27 28 1.182667 CAGGTGTCAGATCCCACGTA 58.817 55.000 0.00 0.00 32.30 3.57
28 29 1.135139 CAGGTGTCAGATCCCACGTAG 59.865 57.143 0.00 0.00 32.30 3.51
29 30 1.005569 AGGTGTCAGATCCCACGTAGA 59.994 52.381 0.00 0.00 32.30 2.59
30 31 1.822990 GGTGTCAGATCCCACGTAGAA 59.177 52.381 0.00 0.00 32.30 2.10
31 32 2.159226 GGTGTCAGATCCCACGTAGAAG 60.159 54.545 0.00 0.00 32.30 2.85
32 33 2.492484 GTGTCAGATCCCACGTAGAAGT 59.508 50.000 0.00 0.00 0.00 3.01
33 34 3.056749 GTGTCAGATCCCACGTAGAAGTT 60.057 47.826 0.00 0.00 0.00 2.66
34 35 3.192844 TGTCAGATCCCACGTAGAAGTTC 59.807 47.826 0.00 0.00 0.00 3.01
35 36 2.422479 TCAGATCCCACGTAGAAGTTCG 59.578 50.000 0.00 0.00 0.00 3.95
36 37 1.134560 AGATCCCACGTAGAAGTTCGC 59.865 52.381 0.00 0.00 0.00 4.70
37 38 0.175073 ATCCCACGTAGAAGTTCGCC 59.825 55.000 0.00 0.00 0.00 5.54
38 39 1.804326 CCCACGTAGAAGTTCGCCG 60.804 63.158 13.43 13.43 0.00 6.46
39 40 1.804326 CCACGTAGAAGTTCGCCGG 60.804 63.158 17.53 0.00 0.00 6.13
40 41 1.210931 CACGTAGAAGTTCGCCGGA 59.789 57.895 5.05 0.00 0.00 5.14
41 42 0.797249 CACGTAGAAGTTCGCCGGAG 60.797 60.000 5.05 0.00 0.00 4.63
42 43 1.872679 CGTAGAAGTTCGCCGGAGC 60.873 63.158 5.05 0.00 0.00 4.70
63 64 2.047274 GCAAGTGCACCGCCTCTA 60.047 61.111 14.63 0.00 41.59 2.43
64 65 1.450312 GCAAGTGCACCGCCTCTAT 60.450 57.895 14.63 0.00 41.59 1.98
65 66 1.709147 GCAAGTGCACCGCCTCTATG 61.709 60.000 14.63 1.51 41.59 2.23
66 67 1.091771 CAAGTGCACCGCCTCTATGG 61.092 60.000 14.63 0.00 39.35 2.74
67 68 1.553690 AAGTGCACCGCCTCTATGGT 61.554 55.000 14.63 0.00 39.66 3.55
68 69 0.686441 AGTGCACCGCCTCTATGGTA 60.686 55.000 14.63 0.00 36.50 3.25
69 70 0.393077 GTGCACCGCCTCTATGGTAT 59.607 55.000 5.22 0.00 36.50 2.73
70 71 0.679505 TGCACCGCCTCTATGGTATC 59.320 55.000 0.00 0.00 36.50 2.24
71 72 0.037232 GCACCGCCTCTATGGTATCC 60.037 60.000 0.00 0.00 36.50 2.59
72 73 1.338107 CACCGCCTCTATGGTATCCA 58.662 55.000 0.00 0.00 36.50 3.41
73 74 1.902508 CACCGCCTCTATGGTATCCAT 59.097 52.381 6.52 6.52 46.99 3.41
74 75 1.902508 ACCGCCTCTATGGTATCCATG 59.097 52.381 11.04 0.00 44.84 3.66
75 76 1.406069 CCGCCTCTATGGTATCCATGC 60.406 57.143 11.04 5.40 44.84 4.06
76 77 1.737029 CGCCTCTATGGTATCCATGCG 60.737 57.143 13.63 13.63 44.84 4.73
77 78 1.276421 GCCTCTATGGTATCCATGCGT 59.724 52.381 11.04 0.00 44.84 5.24
78 79 2.932622 GCCTCTATGGTATCCATGCGTG 60.933 54.545 11.04 0.00 44.84 5.34
79 80 2.341257 CTCTATGGTATCCATGCGTGC 58.659 52.381 11.04 0.00 44.84 5.34
80 81 1.691434 TCTATGGTATCCATGCGTGCA 59.309 47.619 11.04 0.00 44.84 4.57
81 82 2.071540 CTATGGTATCCATGCGTGCAG 58.928 52.381 11.04 0.00 44.84 4.41
82 83 0.535780 ATGGTATCCATGCGTGCAGG 60.536 55.000 1.01 1.01 43.39 4.85
83 84 1.146041 GGTATCCATGCGTGCAGGA 59.854 57.895 11.29 11.14 35.59 3.86
84 85 0.882042 GGTATCCATGCGTGCAGGAG 60.882 60.000 11.29 0.00 34.40 3.69
85 86 0.882042 GTATCCATGCGTGCAGGAGG 60.882 60.000 11.29 8.50 34.40 4.30
86 87 1.048160 TATCCATGCGTGCAGGAGGA 61.048 55.000 11.29 13.57 34.40 3.71
87 88 1.913951 ATCCATGCGTGCAGGAGGAA 61.914 55.000 11.29 0.16 34.40 3.36
88 89 1.452651 CCATGCGTGCAGGAGGAAT 60.453 57.895 11.29 0.00 0.00 3.01
89 90 1.721664 CCATGCGTGCAGGAGGAATG 61.722 60.000 11.29 7.56 0.00 2.67
90 91 2.117156 ATGCGTGCAGGAGGAATGC 61.117 57.895 11.29 0.00 44.11 3.56
91 92 3.512516 GCGTGCAGGAGGAATGCC 61.513 66.667 11.29 0.00 43.18 4.40
92 93 3.197790 CGTGCAGGAGGAATGCCG 61.198 66.667 0.00 0.00 43.18 5.69
93 94 2.045926 GTGCAGGAGGAATGCCGT 60.046 61.111 0.00 0.00 43.18 5.68
94 95 2.046023 TGCAGGAGGAATGCCGTG 60.046 61.111 0.00 0.00 43.18 4.94
95 96 3.512516 GCAGGAGGAATGCCGTGC 61.513 66.667 0.00 0.00 39.96 5.34
96 97 3.197790 CAGGAGGAATGCCGTGCG 61.198 66.667 0.00 0.00 39.96 5.34
97 98 3.390521 AGGAGGAATGCCGTGCGA 61.391 61.111 0.00 0.00 39.96 5.10
98 99 3.195698 GGAGGAATGCCGTGCGAC 61.196 66.667 0.00 0.00 39.96 5.19
99 100 3.554692 GAGGAATGCCGTGCGACG 61.555 66.667 0.00 0.00 42.11 5.12
108 109 3.299585 CGTGCGACGGATTGCTAG 58.700 61.111 0.00 0.00 38.08 3.42
109 110 1.226575 CGTGCGACGGATTGCTAGA 60.227 57.895 0.00 0.00 38.08 2.43
110 111 0.595053 CGTGCGACGGATTGCTAGAT 60.595 55.000 0.00 0.00 38.08 1.98
111 112 1.132588 GTGCGACGGATTGCTAGATC 58.867 55.000 0.00 0.00 36.04 2.75
112 113 0.032130 TGCGACGGATTGCTAGATCC 59.968 55.000 0.00 0.00 41.82 3.36
139 140 8.868522 ATGATCACATCACGGGAAAAATATAT 57.131 30.769 0.00 0.00 43.01 0.86
140 141 8.322906 TGATCACATCACGGGAAAAATATATC 57.677 34.615 0.00 0.00 33.59 1.63
141 142 7.936301 TGATCACATCACGGGAAAAATATATCA 59.064 33.333 0.00 0.00 33.59 2.15
142 143 8.690203 ATCACATCACGGGAAAAATATATCAA 57.310 30.769 0.00 0.00 0.00 2.57
143 144 8.690203 TCACATCACGGGAAAAATATATCAAT 57.310 30.769 0.00 0.00 0.00 2.57
144 145 9.130661 TCACATCACGGGAAAAATATATCAATT 57.869 29.630 0.00 0.00 0.00 2.32
145 146 9.748708 CACATCACGGGAAAAATATATCAATTT 57.251 29.630 0.00 0.00 0.00 1.82
166 167 4.794278 TTTTAGTGCATCTCCGAGTACA 57.206 40.909 0.00 0.00 0.00 2.90
167 168 4.794278 TTTAGTGCATCTCCGAGTACAA 57.206 40.909 0.00 0.00 0.00 2.41
168 169 5.339008 TTTAGTGCATCTCCGAGTACAAT 57.661 39.130 0.00 0.00 0.00 2.71
169 170 3.895232 AGTGCATCTCCGAGTACAATT 57.105 42.857 0.00 0.00 0.00 2.32
170 171 3.525537 AGTGCATCTCCGAGTACAATTG 58.474 45.455 3.24 3.24 0.00 2.32
171 172 2.609459 GTGCATCTCCGAGTACAATTGG 59.391 50.000 10.83 0.00 0.00 3.16
172 173 2.236146 TGCATCTCCGAGTACAATTGGT 59.764 45.455 10.83 0.00 0.00 3.67
173 174 2.866762 GCATCTCCGAGTACAATTGGTC 59.133 50.000 10.83 2.69 0.00 4.02
174 175 3.458189 CATCTCCGAGTACAATTGGTCC 58.542 50.000 10.83 0.00 0.00 4.46
175 176 1.475280 TCTCCGAGTACAATTGGTCCG 59.525 52.381 10.83 7.49 0.00 4.79
176 177 0.533491 TCCGAGTACAATTGGTCCGG 59.467 55.000 18.42 18.42 37.99 5.14
177 178 0.248289 CCGAGTACAATTGGTCCGGT 59.752 55.000 10.83 0.00 34.46 5.28
178 179 1.477700 CCGAGTACAATTGGTCCGGTA 59.522 52.381 10.83 0.00 34.46 4.02
179 180 2.094078 CCGAGTACAATTGGTCCGGTAA 60.094 50.000 10.83 0.00 34.46 2.85
180 181 2.925563 CGAGTACAATTGGTCCGGTAAC 59.074 50.000 10.83 0.00 0.00 2.50
181 182 3.614630 CGAGTACAATTGGTCCGGTAACA 60.615 47.826 10.83 0.00 0.00 2.41
182 183 4.317488 GAGTACAATTGGTCCGGTAACAA 58.683 43.478 10.83 3.87 0.00 2.83
183 184 4.716794 AGTACAATTGGTCCGGTAACAAA 58.283 39.130 10.83 0.00 0.00 2.83
184 185 5.131784 AGTACAATTGGTCCGGTAACAAAA 58.868 37.500 10.83 0.00 0.00 2.44
185 186 5.593502 AGTACAATTGGTCCGGTAACAAAAA 59.406 36.000 10.83 0.00 0.00 1.94
186 187 5.538849 ACAATTGGTCCGGTAACAAAAAT 57.461 34.783 10.83 0.00 0.00 1.82
187 188 5.919755 ACAATTGGTCCGGTAACAAAAATT 58.080 33.333 10.83 0.00 0.00 1.82
188 189 7.052142 ACAATTGGTCCGGTAACAAAAATTA 57.948 32.000 10.83 0.00 0.00 1.40
189 190 7.498443 ACAATTGGTCCGGTAACAAAAATTAA 58.502 30.769 10.83 0.00 0.00 1.40
190 191 8.151596 ACAATTGGTCCGGTAACAAAAATTAAT 58.848 29.630 10.83 0.00 0.00 1.40
191 192 9.640963 CAATTGGTCCGGTAACAAAAATTAATA 57.359 29.630 0.00 0.00 0.00 0.98
192 193 9.863845 AATTGGTCCGGTAACAAAAATTAATAG 57.136 29.630 0.00 0.00 0.00 1.73
193 194 7.999450 TGGTCCGGTAACAAAAATTAATAGT 57.001 32.000 0.00 0.00 0.00 2.12
194 195 9.512588 TTGGTCCGGTAACAAAAATTAATAGTA 57.487 29.630 0.00 0.00 0.00 1.82
195 196 9.512588 TGGTCCGGTAACAAAAATTAATAGTAA 57.487 29.630 0.00 0.00 0.00 2.24
215 216 9.745880 ATAGTAATTAGTGTCGAATCGATTTGT 57.254 29.630 21.98 8.09 38.42 2.83
217 218 9.577110 AGTAATTAGTGTCGAATCGATTTGTAA 57.423 29.630 21.98 14.43 38.42 2.41
218 219 9.831054 GTAATTAGTGTCGAATCGATTTGTAAG 57.169 33.333 21.98 8.28 38.42 2.34
219 220 8.475331 AATTAGTGTCGAATCGATTTGTAAGT 57.525 30.769 21.98 16.38 38.42 2.24
220 221 7.878477 TTAGTGTCGAATCGATTTGTAAGTT 57.122 32.000 21.98 10.07 38.42 2.66
221 222 8.969121 TTAGTGTCGAATCGATTTGTAAGTTA 57.031 30.769 21.98 8.30 38.42 2.24
222 223 7.878477 AGTGTCGAATCGATTTGTAAGTTAA 57.122 32.000 21.98 1.48 38.42 2.01
223 224 8.475331 AGTGTCGAATCGATTTGTAAGTTAAT 57.525 30.769 21.98 3.77 38.42 1.40
224 225 8.932791 AGTGTCGAATCGATTTGTAAGTTAATT 58.067 29.630 21.98 0.00 38.42 1.40
225 226 9.195831 GTGTCGAATCGATTTGTAAGTTAATTC 57.804 33.333 21.98 1.41 38.42 2.17
226 227 8.927721 TGTCGAATCGATTTGTAAGTTAATTCA 58.072 29.630 21.98 0.00 38.42 2.57
227 228 9.749490 GTCGAATCGATTTGTAAGTTAATTCAA 57.251 29.630 21.98 0.00 38.42 2.69
267 268 5.894807 AGCCAGACAATTAATTACATGTGC 58.105 37.500 9.11 0.00 0.00 4.57
268 269 5.418524 AGCCAGACAATTAATTACATGTGCA 59.581 36.000 9.11 0.00 0.00 4.57
269 270 6.071447 AGCCAGACAATTAATTACATGTGCAA 60.071 34.615 9.11 0.00 0.00 4.08
270 271 6.757947 GCCAGACAATTAATTACATGTGCAAT 59.242 34.615 9.11 0.00 0.00 3.56
271 272 7.278424 GCCAGACAATTAATTACATGTGCAATT 59.722 33.333 9.11 10.03 0.00 2.32
272 273 9.800433 CCAGACAATTAATTACATGTGCAATTA 57.200 29.630 9.11 9.01 0.00 1.40
282 283 9.781633 AATTACATGTGCAATTAATTATGCCAT 57.218 25.926 9.11 8.99 41.87 4.40
283 284 9.781633 ATTACATGTGCAATTAATTATGCCATT 57.218 25.926 9.11 6.59 41.87 3.16
284 285 9.610705 TTACATGTGCAATTAATTATGCCATTT 57.389 25.926 9.11 7.92 41.87 2.32
286 287 9.610705 ACATGTGCAATTAATTATGCCATTTAA 57.389 25.926 9.15 0.00 41.87 1.52
371 372 9.745018 AATTAGGCATGCAGATAACATTATACT 57.255 29.630 21.36 4.31 0.00 2.12
372 373 9.745018 ATTAGGCATGCAGATAACATTATACTT 57.255 29.630 21.36 0.00 0.00 2.24
373 374 7.678947 AGGCATGCAGATAACATTATACTTC 57.321 36.000 21.36 0.00 0.00 3.01
374 375 6.369890 AGGCATGCAGATAACATTATACTTCG 59.630 38.462 21.36 0.00 0.00 3.79
375 376 6.147821 GGCATGCAGATAACATTATACTTCGT 59.852 38.462 21.36 0.00 0.00 3.85
376 377 7.307989 GGCATGCAGATAACATTATACTTCGTT 60.308 37.037 21.36 0.00 0.00 3.85
377 378 8.070171 GCATGCAGATAACATTATACTTCGTTT 58.930 33.333 14.21 0.00 0.00 3.60
381 382 9.939047 GCAGATAACATTATACTTCGTTTATCG 57.061 33.333 0.00 0.00 41.41 2.92
410 411 6.751514 AAACATTATACTTCACGCAATCCA 57.248 33.333 0.00 0.00 0.00 3.41
411 412 5.734855 ACATTATACTTCACGCAATCCAC 57.265 39.130 0.00 0.00 0.00 4.02
412 413 5.428253 ACATTATACTTCACGCAATCCACT 58.572 37.500 0.00 0.00 0.00 4.00
413 414 5.880332 ACATTATACTTCACGCAATCCACTT 59.120 36.000 0.00 0.00 0.00 3.16
414 415 6.374333 ACATTATACTTCACGCAATCCACTTT 59.626 34.615 0.00 0.00 0.00 2.66
415 416 6.811253 TTATACTTCACGCAATCCACTTTT 57.189 33.333 0.00 0.00 0.00 2.27
416 417 3.626028 ACTTCACGCAATCCACTTTTC 57.374 42.857 0.00 0.00 0.00 2.29
417 418 3.214328 ACTTCACGCAATCCACTTTTCT 58.786 40.909 0.00 0.00 0.00 2.52
418 419 4.385825 ACTTCACGCAATCCACTTTTCTA 58.614 39.130 0.00 0.00 0.00 2.10
419 420 4.819630 ACTTCACGCAATCCACTTTTCTAA 59.180 37.500 0.00 0.00 0.00 2.10
420 421 4.742438 TCACGCAATCCACTTTTCTAAC 57.258 40.909 0.00 0.00 0.00 2.34
421 422 4.385825 TCACGCAATCCACTTTTCTAACT 58.614 39.130 0.00 0.00 0.00 2.24
422 423 4.213270 TCACGCAATCCACTTTTCTAACTG 59.787 41.667 0.00 0.00 0.00 3.16
423 424 4.024048 CACGCAATCCACTTTTCTAACTGT 60.024 41.667 0.00 0.00 0.00 3.55
424 425 4.578928 ACGCAATCCACTTTTCTAACTGTT 59.421 37.500 0.00 0.00 0.00 3.16
425 426 5.147162 CGCAATCCACTTTTCTAACTGTTC 58.853 41.667 0.00 0.00 0.00 3.18
426 427 5.049405 CGCAATCCACTTTTCTAACTGTTCT 60.049 40.000 0.00 0.00 0.00 3.01
427 428 6.513393 CGCAATCCACTTTTCTAACTGTTCTT 60.513 38.462 0.00 0.00 0.00 2.52
428 429 7.203218 GCAATCCACTTTTCTAACTGTTCTTT 58.797 34.615 0.00 0.00 0.00 2.52
429 430 7.379797 GCAATCCACTTTTCTAACTGTTCTTTC 59.620 37.037 0.00 0.00 0.00 2.62
430 431 6.937436 TCCACTTTTCTAACTGTTCTTTCC 57.063 37.500 0.00 0.00 0.00 3.13
431 432 6.419791 TCCACTTTTCTAACTGTTCTTTCCA 58.580 36.000 0.00 0.00 0.00 3.53
432 433 6.887545 TCCACTTTTCTAACTGTTCTTTCCAA 59.112 34.615 0.00 0.00 0.00 3.53
433 434 7.067008 TCCACTTTTCTAACTGTTCTTTCCAAG 59.933 37.037 0.00 0.00 0.00 3.61
434 435 7.067008 CCACTTTTCTAACTGTTCTTTCCAAGA 59.933 37.037 0.00 0.00 35.26 3.02
435 436 7.910683 CACTTTTCTAACTGTTCTTTCCAAGAC 59.089 37.037 0.00 0.00 37.23 3.01
436 437 7.829706 ACTTTTCTAACTGTTCTTTCCAAGACT 59.170 33.333 0.00 0.00 37.23 3.24
437 438 7.553881 TTTCTAACTGTTCTTTCCAAGACTG 57.446 36.000 0.00 0.00 37.23 3.51
438 439 5.057149 TCTAACTGTTCTTTCCAAGACTGC 58.943 41.667 0.00 0.00 37.23 4.40
439 440 3.567478 ACTGTTCTTTCCAAGACTGCT 57.433 42.857 0.00 0.00 37.23 4.24
440 441 3.471680 ACTGTTCTTTCCAAGACTGCTC 58.528 45.455 0.00 0.00 37.23 4.26
441 442 3.118261 ACTGTTCTTTCCAAGACTGCTCA 60.118 43.478 0.00 0.00 37.23 4.26
442 443 4.070716 CTGTTCTTTCCAAGACTGCTCAT 58.929 43.478 0.00 0.00 37.23 2.90
443 444 5.221722 ACTGTTCTTTCCAAGACTGCTCATA 60.222 40.000 0.00 0.00 37.23 2.15
444 445 5.620206 TGTTCTTTCCAAGACTGCTCATAA 58.380 37.500 0.00 0.00 37.23 1.90
445 446 6.240894 TGTTCTTTCCAAGACTGCTCATAAT 58.759 36.000 0.00 0.00 37.23 1.28
446 447 6.372659 TGTTCTTTCCAAGACTGCTCATAATC 59.627 38.462 0.00 0.00 37.23 1.75
447 448 6.305272 TCTTTCCAAGACTGCTCATAATCT 57.695 37.500 0.00 0.00 31.20 2.40
448 449 6.111382 TCTTTCCAAGACTGCTCATAATCTG 58.889 40.000 0.00 0.00 31.20 2.90
449 450 3.801698 TCCAAGACTGCTCATAATCTGC 58.198 45.455 0.00 0.00 0.00 4.26
450 451 2.877168 CCAAGACTGCTCATAATCTGCC 59.123 50.000 0.00 0.00 0.00 4.85
451 452 2.522836 AGACTGCTCATAATCTGCCG 57.477 50.000 0.00 0.00 0.00 5.69
452 453 0.864455 GACTGCTCATAATCTGCCGC 59.136 55.000 0.00 0.00 0.00 6.53
453 454 0.467384 ACTGCTCATAATCTGCCGCT 59.533 50.000 0.00 0.00 0.00 5.52
454 455 1.134280 ACTGCTCATAATCTGCCGCTT 60.134 47.619 0.00 0.00 0.00 4.68
455 456 1.945394 CTGCTCATAATCTGCCGCTTT 59.055 47.619 0.00 0.00 0.00 3.51
456 457 3.133691 CTGCTCATAATCTGCCGCTTTA 58.866 45.455 0.00 0.00 0.00 1.85
457 458 2.872245 TGCTCATAATCTGCCGCTTTAC 59.128 45.455 0.00 0.00 0.00 2.01
458 459 2.872245 GCTCATAATCTGCCGCTTTACA 59.128 45.455 0.00 0.00 0.00 2.41
459 460 3.499918 GCTCATAATCTGCCGCTTTACAT 59.500 43.478 0.00 0.00 0.00 2.29
460 461 4.023707 GCTCATAATCTGCCGCTTTACATT 60.024 41.667 0.00 0.00 0.00 2.71
461 462 5.422666 TCATAATCTGCCGCTTTACATTG 57.577 39.130 0.00 0.00 0.00 2.82
462 463 2.566952 AATCTGCCGCTTTACATTGC 57.433 45.000 0.00 0.00 0.00 3.56
463 464 0.740737 ATCTGCCGCTTTACATTGCC 59.259 50.000 0.00 0.00 0.00 4.52
464 465 0.607762 TCTGCCGCTTTACATTGCCA 60.608 50.000 0.00 0.00 0.00 4.92
465 466 0.456653 CTGCCGCTTTACATTGCCAC 60.457 55.000 0.00 0.00 0.00 5.01
466 467 1.153842 GCCGCTTTACATTGCCACC 60.154 57.895 0.00 0.00 0.00 4.61
467 468 1.872197 GCCGCTTTACATTGCCACCA 61.872 55.000 0.00 0.00 0.00 4.17
468 469 0.109319 CCGCTTTACATTGCCACCAC 60.109 55.000 0.00 0.00 0.00 4.16
469 470 0.881118 CGCTTTACATTGCCACCACT 59.119 50.000 0.00 0.00 0.00 4.00
470 471 1.135689 CGCTTTACATTGCCACCACTC 60.136 52.381 0.00 0.00 0.00 3.51
471 472 2.162681 GCTTTACATTGCCACCACTCT 58.837 47.619 0.00 0.00 0.00 3.24
472 473 2.558359 GCTTTACATTGCCACCACTCTT 59.442 45.455 0.00 0.00 0.00 2.85
473 474 3.366374 GCTTTACATTGCCACCACTCTTC 60.366 47.826 0.00 0.00 0.00 2.87
474 475 3.500448 TTACATTGCCACCACTCTTCA 57.500 42.857 0.00 0.00 0.00 3.02
475 476 2.363306 ACATTGCCACCACTCTTCAA 57.637 45.000 0.00 0.00 0.00 2.69
476 477 2.665165 ACATTGCCACCACTCTTCAAA 58.335 42.857 0.00 0.00 0.00 2.69
477 478 2.362077 ACATTGCCACCACTCTTCAAAC 59.638 45.455 0.00 0.00 0.00 2.93
478 479 2.136298 TTGCCACCACTCTTCAAACA 57.864 45.000 0.00 0.00 0.00 2.83
479 480 1.388547 TGCCACCACTCTTCAAACAC 58.611 50.000 0.00 0.00 0.00 3.32
480 481 1.064758 TGCCACCACTCTTCAAACACT 60.065 47.619 0.00 0.00 0.00 3.55
481 482 1.334869 GCCACCACTCTTCAAACACTG 59.665 52.381 0.00 0.00 0.00 3.66
482 483 2.643551 CCACCACTCTTCAAACACTGT 58.356 47.619 0.00 0.00 0.00 3.55
483 484 3.016736 CCACCACTCTTCAAACACTGTT 58.983 45.455 0.00 0.00 0.00 3.16
484 485 3.443681 CCACCACTCTTCAAACACTGTTT 59.556 43.478 1.00 1.00 0.00 2.83
485 486 4.438744 CCACCACTCTTCAAACACTGTTTC 60.439 45.833 4.06 0.00 0.00 2.78
486 487 3.374058 ACCACTCTTCAAACACTGTTTCG 59.626 43.478 4.06 1.81 0.00 3.46
487 488 3.374058 CCACTCTTCAAACACTGTTTCGT 59.626 43.478 4.06 0.00 0.00 3.85
488 489 4.494199 CCACTCTTCAAACACTGTTTCGTC 60.494 45.833 4.06 0.00 0.00 4.20
489 490 3.621715 ACTCTTCAAACACTGTTTCGTCC 59.378 43.478 4.06 0.00 0.00 4.79
490 491 3.869065 TCTTCAAACACTGTTTCGTCCT 58.131 40.909 4.06 0.00 0.00 3.85
491 492 3.621268 TCTTCAAACACTGTTTCGTCCTG 59.379 43.478 4.06 0.00 0.00 3.86
492 493 2.980568 TCAAACACTGTTTCGTCCTGT 58.019 42.857 4.06 0.00 0.00 4.00
493 494 4.126208 TCAAACACTGTTTCGTCCTGTA 57.874 40.909 4.06 0.00 0.00 2.74
494 495 4.116961 TCAAACACTGTTTCGTCCTGTAG 58.883 43.478 4.06 0.00 0.00 2.74
495 496 2.150397 ACACTGTTTCGTCCTGTAGC 57.850 50.000 0.00 0.00 0.00 3.58
496 497 1.411246 ACACTGTTTCGTCCTGTAGCA 59.589 47.619 0.00 0.00 0.00 3.49
497 498 2.159014 ACACTGTTTCGTCCTGTAGCAA 60.159 45.455 0.00 0.00 0.00 3.91
498 499 2.221055 CACTGTTTCGTCCTGTAGCAAC 59.779 50.000 0.00 0.00 0.00 4.17
499 500 2.159014 ACTGTTTCGTCCTGTAGCAACA 60.159 45.455 0.00 0.00 0.00 3.33
500 501 2.206750 TGTTTCGTCCTGTAGCAACAC 58.793 47.619 0.00 0.00 0.00 3.32
501 502 2.206750 GTTTCGTCCTGTAGCAACACA 58.793 47.619 0.00 0.00 0.00 3.72
502 503 1.860676 TTCGTCCTGTAGCAACACAC 58.139 50.000 0.00 0.00 0.00 3.82
503 504 0.318360 TCGTCCTGTAGCAACACACG 60.318 55.000 0.00 0.00 37.82 4.49
504 505 0.596600 CGTCCTGTAGCAACACACGT 60.597 55.000 0.00 0.00 34.36 4.49
505 506 0.859232 GTCCTGTAGCAACACACGTG 59.141 55.000 15.48 15.48 0.00 4.49
507 508 1.682323 TCCTGTAGCAACACACGTGTA 59.318 47.619 22.90 0.76 44.13 2.90
508 509 2.101082 TCCTGTAGCAACACACGTGTAA 59.899 45.455 22.90 0.00 44.13 2.41
509 510 3.064207 CCTGTAGCAACACACGTGTAAT 58.936 45.455 22.90 10.04 44.13 1.89
510 511 3.496884 CCTGTAGCAACACACGTGTAATT 59.503 43.478 22.90 15.85 44.13 1.40
511 512 4.687018 CCTGTAGCAACACACGTGTAATTA 59.313 41.667 22.90 7.13 44.13 1.40
512 513 5.163992 CCTGTAGCAACACACGTGTAATTAG 60.164 44.000 22.90 11.28 44.13 1.73
513 514 3.806316 AGCAACACACGTGTAATTAGC 57.194 42.857 22.90 20.78 44.13 3.09
514 515 3.399330 AGCAACACACGTGTAATTAGCT 58.601 40.909 22.90 22.30 44.13 3.32
515 516 4.562082 AGCAACACACGTGTAATTAGCTA 58.438 39.130 22.90 0.00 44.13 3.32
516 517 4.625742 AGCAACACACGTGTAATTAGCTAG 59.374 41.667 22.90 8.13 44.13 3.42
517 518 4.387862 GCAACACACGTGTAATTAGCTAGT 59.612 41.667 22.90 8.84 44.13 2.57
518 519 5.107220 GCAACACACGTGTAATTAGCTAGTT 60.107 40.000 22.90 14.56 44.13 2.24
519 520 6.296605 CAACACACGTGTAATTAGCTAGTTG 58.703 40.000 22.90 21.57 44.13 3.16
520 521 4.927425 ACACACGTGTAATTAGCTAGTTGG 59.073 41.667 22.90 6.11 42.90 3.77
521 522 4.927425 CACACGTGTAATTAGCTAGTTGGT 59.073 41.667 22.90 2.28 0.00 3.67
522 523 5.407387 CACACGTGTAATTAGCTAGTTGGTT 59.593 40.000 22.90 0.00 0.00 3.67
523 524 6.587226 CACACGTGTAATTAGCTAGTTGGTTA 59.413 38.462 22.90 0.00 0.00 2.85
524 525 7.277098 CACACGTGTAATTAGCTAGTTGGTTAT 59.723 37.037 22.90 0.00 0.00 1.89
525 526 8.469200 ACACGTGTAATTAGCTAGTTGGTTATA 58.531 33.333 21.98 0.00 0.00 0.98
526 527 9.304731 CACGTGTAATTAGCTAGTTGGTTATAA 57.695 33.333 11.47 0.00 0.00 0.98
527 528 9.874205 ACGTGTAATTAGCTAGTTGGTTATAAA 57.126 29.630 11.47 0.00 0.00 1.40
557 558 5.883503 TTTTGACGAGTTGGTTACAAAGT 57.116 34.783 0.00 0.00 38.54 2.66
558 559 5.883503 TTTGACGAGTTGGTTACAAAGTT 57.116 34.783 0.00 0.00 38.54 2.66
559 560 6.981762 TTTGACGAGTTGGTTACAAAGTTA 57.018 33.333 0.00 0.00 38.54 2.24
560 561 7.556733 TTTGACGAGTTGGTTACAAAGTTAT 57.443 32.000 0.00 0.00 38.54 1.89
561 562 6.774354 TGACGAGTTGGTTACAAAGTTATC 57.226 37.500 0.00 0.00 38.54 1.75
562 563 6.518493 TGACGAGTTGGTTACAAAGTTATCT 58.482 36.000 0.00 0.00 38.54 1.98
563 564 6.987992 TGACGAGTTGGTTACAAAGTTATCTT 59.012 34.615 0.00 0.00 38.54 2.40
564 565 7.042321 TGACGAGTTGGTTACAAAGTTATCTTG 60.042 37.037 0.00 0.00 38.54 3.02
565 566 6.077838 CGAGTTGGTTACAAAGTTATCTTGC 58.922 40.000 0.00 0.00 38.54 4.01
566 567 6.327279 AGTTGGTTACAAAGTTATCTTGCC 57.673 37.500 0.00 0.00 38.54 4.52
567 568 5.830991 AGTTGGTTACAAAGTTATCTTGCCA 59.169 36.000 0.00 0.00 38.54 4.92
568 569 6.322712 AGTTGGTTACAAAGTTATCTTGCCAA 59.677 34.615 0.00 0.00 38.54 4.52
569 570 6.909550 TGGTTACAAAGTTATCTTGCCAAT 57.090 33.333 0.00 0.00 33.79 3.16
570 571 6.919721 TGGTTACAAAGTTATCTTGCCAATC 58.080 36.000 0.00 0.00 33.79 2.67
571 572 6.719370 TGGTTACAAAGTTATCTTGCCAATCT 59.281 34.615 0.00 0.00 33.79 2.40
572 573 7.094377 TGGTTACAAAGTTATCTTGCCAATCTC 60.094 37.037 0.00 0.00 33.79 2.75
573 574 7.094377 GGTTACAAAGTTATCTTGCCAATCTCA 60.094 37.037 0.00 0.00 33.79 3.27
574 575 8.462016 GTTACAAAGTTATCTTGCCAATCTCAT 58.538 33.333 0.00 0.00 33.79 2.90
575 576 9.679661 TTACAAAGTTATCTTGCCAATCTCATA 57.320 29.630 0.00 0.00 33.79 2.15
576 577 8.579850 ACAAAGTTATCTTGCCAATCTCATAA 57.420 30.769 0.00 0.00 33.79 1.90
577 578 9.023962 ACAAAGTTATCTTGCCAATCTCATAAA 57.976 29.630 0.00 0.00 33.79 1.40
578 579 9.859427 CAAAGTTATCTTGCCAATCTCATAAAA 57.141 29.630 0.00 0.00 33.79 1.52
580 581 8.230472 AGTTATCTTGCCAATCTCATAAAAGG 57.770 34.615 0.00 0.00 0.00 3.11
581 582 7.836183 AGTTATCTTGCCAATCTCATAAAAGGT 59.164 33.333 0.00 0.00 0.00 3.50
582 583 8.470002 GTTATCTTGCCAATCTCATAAAAGGTT 58.530 33.333 0.00 0.00 0.00 3.50
583 584 6.271488 TCTTGCCAATCTCATAAAAGGTTG 57.729 37.500 0.00 0.00 37.17 3.77
584 585 4.454728 TGCCAATCTCATAAAAGGTTGC 57.545 40.909 0.00 0.00 36.28 4.17
585 586 3.195396 TGCCAATCTCATAAAAGGTTGCC 59.805 43.478 0.00 0.00 36.28 4.52
586 587 3.195396 GCCAATCTCATAAAAGGTTGCCA 59.805 43.478 0.00 0.00 36.28 4.92
587 588 4.322650 GCCAATCTCATAAAAGGTTGCCAA 60.323 41.667 0.00 0.00 36.28 4.52
588 589 5.627503 GCCAATCTCATAAAAGGTTGCCAAT 60.628 40.000 0.00 0.00 36.28 3.16
589 590 6.408869 CCAATCTCATAAAAGGTTGCCAATT 58.591 36.000 0.00 0.00 36.28 2.32
590 591 6.314400 CCAATCTCATAAAAGGTTGCCAATTG 59.686 38.462 0.00 0.00 36.28 2.32
591 592 6.610075 ATCTCATAAAAGGTTGCCAATTGT 57.390 33.333 4.43 0.00 0.00 2.71
592 593 6.418057 TCTCATAAAAGGTTGCCAATTGTT 57.582 33.333 4.43 0.00 0.00 2.83
593 594 6.222389 TCTCATAAAAGGTTGCCAATTGTTG 58.778 36.000 4.43 0.00 0.00 3.33
604 605 3.457610 CCAATTGTTGGCAAGTCTTGT 57.542 42.857 14.03 0.00 45.17 3.16
605 606 3.383761 CCAATTGTTGGCAAGTCTTGTC 58.616 45.455 10.37 10.37 45.17 3.18
606 607 3.383761 CAATTGTTGGCAAGTCTTGTCC 58.616 45.455 14.50 14.96 38.10 4.02
607 608 2.136298 TTGTTGGCAAGTCTTGTCCA 57.864 45.000 18.94 18.94 35.86 4.02
608 609 2.136298 TGTTGGCAAGTCTTGTCCAA 57.864 45.000 25.19 25.19 41.31 3.53
609 610 2.451490 TGTTGGCAAGTCTTGTCCAAA 58.549 42.857 28.13 20.13 43.36 3.28
610 611 3.030291 TGTTGGCAAGTCTTGTCCAAAT 58.970 40.909 28.13 0.00 43.36 2.32
611 612 4.211125 TGTTGGCAAGTCTTGTCCAAATA 58.789 39.130 28.13 21.35 43.36 1.40
612 613 4.832266 TGTTGGCAAGTCTTGTCCAAATAT 59.168 37.500 28.13 0.00 43.36 1.28
613 614 5.304101 TGTTGGCAAGTCTTGTCCAAATATT 59.696 36.000 28.13 0.00 43.36 1.28
614 615 6.491745 TGTTGGCAAGTCTTGTCCAAATATTA 59.508 34.615 28.13 16.70 43.36 0.98
615 616 7.014711 TGTTGGCAAGTCTTGTCCAAATATTAA 59.985 33.333 28.13 12.99 43.36 1.40
627 628 9.920946 TTGTCCAAATATTAATAGAAGCTTCCT 57.079 29.630 22.81 12.48 0.00 3.36
628 629 9.920946 TGTCCAAATATTAATAGAAGCTTCCTT 57.079 29.630 22.81 17.90 0.00 3.36
642 643 2.606308 GCTTCCTTGTCACATTGCACAG 60.606 50.000 0.00 0.00 0.00 3.66
646 647 1.335810 CTTGTCACATTGCACAGCACT 59.664 47.619 0.00 0.00 38.71 4.40
657 658 1.382522 CACAGCACTTCACACAACCT 58.617 50.000 0.00 0.00 0.00 3.50
689 730 5.245531 CACCTACCAATACAACACATCAGT 58.754 41.667 0.00 0.00 0.00 3.41
787 833 1.587054 CCCTTCTCACGAACGCTCT 59.413 57.895 0.00 0.00 0.00 4.09
905 960 1.991167 TAAATCCACCCGCCTCCGT 60.991 57.895 0.00 0.00 0.00 4.69
915 970 2.202892 GCCTCCGTCATCCCGAAC 60.203 66.667 0.00 0.00 0.00 3.95
917 972 2.499685 CTCCGTCATCCCGAACCC 59.500 66.667 0.00 0.00 0.00 4.11
1200 1525 3.543680 TCCCCTCTTGCTAATTTCTCG 57.456 47.619 0.00 0.00 0.00 4.04
1203 1528 2.271800 CCTCTTGCTAATTTCTCGCGT 58.728 47.619 5.77 0.00 0.00 6.01
1214 1561 2.501223 TTCTCGCGTGGAATTCGGCT 62.501 55.000 5.77 0.00 0.00 5.52
1268 1616 3.423154 CCGGCGTTGAGGTTCAGC 61.423 66.667 6.01 0.00 0.00 4.26
1370 1719 3.195661 GAGGTTCAGTGTTGTCGTTTCT 58.804 45.455 0.00 0.00 0.00 2.52
1371 1720 3.195661 AGGTTCAGTGTTGTCGTTTCTC 58.804 45.455 0.00 0.00 0.00 2.87
1406 1756 1.952296 AGTGCCAAGCTCAGTTCTTTG 59.048 47.619 0.00 0.00 0.00 2.77
1482 1832 1.587034 GTGTCGTAGCGCCTATTGTTC 59.413 52.381 2.29 0.00 0.00 3.18
1494 1844 5.578727 GCGCCTATTGTTCCTCATTCTATAG 59.421 44.000 0.00 0.00 0.00 1.31
1500 1850 9.482627 CTATTGTTCCTCATTCTATAGGTTGTC 57.517 37.037 0.00 0.00 34.30 3.18
1556 1907 4.493057 GCCGTACCTTTGCTCGTTTTATAC 60.493 45.833 0.00 0.00 0.00 1.47
1678 2313 6.093495 TGTTGTCCTTGACTGAAGTTAGTTTG 59.907 38.462 0.00 0.00 33.15 2.93
1853 2529 6.449635 TGATTTATTTGCCGAAATAGCTGT 57.550 33.333 0.00 0.00 35.81 4.40
1897 2573 4.323417 AGGATGTTTGTTTGACGATGCTA 58.677 39.130 0.00 0.00 0.00 3.49
1909 2585 8.898761 TGTTTGACGATGCTAATATATTGGTTT 58.101 29.630 8.28 0.00 0.00 3.27
1911 2587 7.433708 TGACGATGCTAATATATTGGTTTGG 57.566 36.000 8.28 1.91 0.00 3.28
2019 2705 5.007682 ACCGATTTGTTAAGTAACATGCCT 58.992 37.500 4.79 0.00 44.72 4.75
2030 2716 4.963276 GTAACATGCCTGTTGCTAATCA 57.037 40.909 16.55 0.00 45.16 2.57
2031 2717 5.505173 GTAACATGCCTGTTGCTAATCAT 57.495 39.130 16.55 0.00 45.16 2.45
2042 2728 6.127814 CCTGTTGCTAATCATCATCTGTTTGT 60.128 38.462 0.00 0.00 0.00 2.83
2045 2731 6.673154 TGCTAATCATCATCTGTTTGTCTG 57.327 37.500 0.00 0.00 0.00 3.51
2141 2827 0.392863 TGCTGGCTACAATGCGTGAT 60.393 50.000 0.00 0.00 0.00 3.06
2267 2953 2.673368 CGGTACATCTGAGTTTGGAAGC 59.327 50.000 0.00 0.00 0.00 3.86
2496 3191 8.947055 AATGTGGTAATTATCTGCCAAAATTC 57.053 30.769 0.00 0.00 32.26 2.17
2809 3504 2.566724 TGAAGGCCATTGGTCAAAATCC 59.433 45.455 10.50 0.00 0.00 3.01
3657 4352 3.558931 ATCGTCCAACAATATCAGGCA 57.441 42.857 0.00 0.00 0.00 4.75
3780 4475 1.737735 TCAAGCGGCTGATGACACG 60.738 57.895 1.81 0.00 0.00 4.49
3989 4684 1.245732 AGATCATCCTACGGTACCGC 58.754 55.000 33.62 14.07 44.19 5.68
4326 5021 3.821748 AGGAACAGAAACTCTTTGGTCC 58.178 45.455 0.00 0.00 46.74 4.46
4423 5119 3.433740 CCTGCAGGTAGAAATAACCCCTC 60.434 52.174 25.53 0.00 37.77 4.30
4424 5120 3.456277 CTGCAGGTAGAAATAACCCCTCT 59.544 47.826 5.57 0.00 37.77 3.69
4425 5121 3.199946 TGCAGGTAGAAATAACCCCTCTG 59.800 47.826 0.00 0.00 37.77 3.35
4426 5122 3.433740 GCAGGTAGAAATAACCCCTCTGG 60.434 52.174 0.00 0.00 37.77 3.86
4557 5263 2.752640 ATGCGAGCAATGCCAGCA 60.753 55.556 23.09 23.09 43.10 4.41
4609 5315 3.755378 AGATTGTGATGACTGCTGGAAAC 59.245 43.478 0.00 0.00 0.00 2.78
4611 5317 4.350368 TTGTGATGACTGCTGGAAACTA 57.650 40.909 0.00 0.00 0.00 2.24
4689 5395 2.995466 TCTTGCAAGATTCTTTGGCG 57.005 45.000 25.16 0.00 0.00 5.69
4720 5426 1.345089 CCTCTCCAGATGAGGCATCAG 59.655 57.143 7.33 2.01 43.67 2.90
4739 5445 5.705609 TCAGCCAAAGATTCTGGTAAAAC 57.294 39.130 0.00 0.00 36.24 2.43
4756 5462 7.007723 TGGTAAAACATTTACATCCAGTCCTT 58.992 34.615 13.27 0.00 0.00 3.36
4757 5463 7.175990 TGGTAAAACATTTACATCCAGTCCTTC 59.824 37.037 13.27 0.00 0.00 3.46
4758 5464 6.590234 AAAACATTTACATCCAGTCCTTCC 57.410 37.500 0.00 0.00 0.00 3.46
4759 5465 5.520748 AACATTTACATCCAGTCCTTCCT 57.479 39.130 0.00 0.00 0.00 3.36
4778 5484 1.467734 CTCAGTTCACCTTGCTGCATC 59.532 52.381 1.84 0.00 0.00 3.91
4840 5546 1.581934 TCTTTCTTGCGTGACAGGTG 58.418 50.000 0.00 0.00 0.00 4.00
5346 6052 8.988546 TTTTGGCAAGGTTAGCTCATTATATA 57.011 30.769 0.00 0.00 0.00 0.86
5348 6054 8.792830 TTGGCAAGGTTAGCTCATTATATATC 57.207 34.615 0.00 0.00 0.00 1.63
5381 6087 5.574891 TCTGTACAGATTCTGCTCTCTTC 57.425 43.478 21.74 0.00 34.37 2.87
5390 6096 6.873076 CAGATTCTGCTCTCTTCACTTTTAGT 59.127 38.462 0.00 0.00 0.00 2.24
5439 6146 6.000891 TGTTCAATTGGTTGAGAGATTTCG 57.999 37.500 5.42 0.00 44.62 3.46
5678 6431 8.478877 AGTTATTCCATAGACTGGTAGTTTCTG 58.521 37.037 0.00 0.00 46.08 3.02
5686 6454 5.298347 AGACTGGTAGTTTCTGTTAGTTGC 58.702 41.667 0.00 0.00 0.00 4.17
5693 6461 6.365518 GGTAGTTTCTGTTAGTTGCTACAGTC 59.634 42.308 0.13 0.00 31.73 3.51
5695 6463 5.070580 AGTTTCTGTTAGTTGCTACAGTCCT 59.929 40.000 0.13 0.00 0.00 3.85
5699 6467 3.901844 TGTTAGTTGCTACAGTCCTTCCT 59.098 43.478 0.13 0.00 0.00 3.36
5785 6863 9.832445 CTATATTAACTGAAGGGCTTAGAAACA 57.168 33.333 0.00 0.00 0.00 2.83
5794 6880 8.593945 TGAAGGGCTTAGAAACATTGAATTAT 57.406 30.769 0.00 0.00 0.00 1.28
5822 6908 7.461107 AGTAATTGTATTCGATTTCAACACCG 58.539 34.615 2.11 0.00 0.00 4.94
5844 6932 1.071605 GTCAGTTGCGCTCTTCGATT 58.928 50.000 9.73 0.00 41.67 3.34
5845 6933 1.070821 TCAGTTGCGCTCTTCGATTG 58.929 50.000 9.73 0.00 41.67 2.67
5863 6951 4.082787 CGATTGATAAACTTTGCTGGTGGT 60.083 41.667 0.00 0.00 0.00 4.16
6039 7135 3.382803 GACGCCTCCAGCAGCAGAT 62.383 63.158 0.00 0.00 44.04 2.90
6105 7201 3.308866 CCAAGGTCGATAAAATGGACGTC 59.691 47.826 7.13 7.13 38.68 4.34
6133 7229 2.383527 GCGACAGAAGCCAAGGACG 61.384 63.158 0.00 0.00 0.00 4.79
6136 7232 2.032528 CAGAAGCCAAGGACGCCA 59.967 61.111 0.00 0.00 0.00 5.69
6205 7301 3.130734 ACCCCTTGGTAAGCATAGAGA 57.869 47.619 0.00 0.00 45.45 3.10
6243 7341 9.003658 CACCATAGTGTATTTTGAGAACTTTCT 57.996 33.333 0.00 0.00 39.30 2.52
6337 7436 4.695396 TGACTTTAACCTGTTCGCTGTAA 58.305 39.130 0.00 0.00 0.00 2.41
6421 7520 2.824341 TCCGTAGAAGGTCTTGAGGAAC 59.176 50.000 0.00 0.00 0.00 3.62
6508 7608 0.871722 TTCCGAAGCGAAATGGTGTG 59.128 50.000 0.00 0.00 0.00 3.82
6549 7665 1.524355 CATAGTTCGATGCTCGGCTTG 59.476 52.381 5.87 3.95 40.88 4.01
6596 7739 5.597813 AGAGTAGCGAATTTCAGTTGTTG 57.402 39.130 0.00 0.00 0.00 3.33
6597 7740 5.297547 AGAGTAGCGAATTTCAGTTGTTGA 58.702 37.500 0.00 0.00 0.00 3.18
6598 7741 5.406780 AGAGTAGCGAATTTCAGTTGTTGAG 59.593 40.000 0.00 0.00 37.07 3.02
6601 7744 3.003689 AGCGAATTTCAGTTGTTGAGGTG 59.996 43.478 0.00 0.00 37.07 4.00
6609 7753 1.202698 AGTTGTTGAGGTGAGTGGAGC 60.203 52.381 0.00 0.00 0.00 4.70
6642 7786 5.423015 TGGAACAAATTTTGCACTTGCTTA 58.577 33.333 9.04 0.00 37.40 3.09
6725 7870 1.059913 AGTACTGCTTTCTGCTGGGT 58.940 50.000 0.00 0.00 43.66 4.51
6726 7871 2.257207 AGTACTGCTTTCTGCTGGGTA 58.743 47.619 0.00 0.00 43.66 3.69
6727 7872 2.028020 AGTACTGCTTTCTGCTGGGTAC 60.028 50.000 0.00 0.00 43.66 3.34
6746 7891 7.815383 TGGGTACTACTAGTAATGGTAGCTTA 58.185 38.462 20.43 12.44 39.01 3.09
6761 7906 9.461312 AATGGTAGCTTATGTCTATCACAAAAA 57.539 29.630 0.00 0.00 38.97 1.94
6806 7956 2.214181 GAGGAAGCTCTTGACGGCGA 62.214 60.000 16.62 0.00 0.00 5.54
6826 7976 4.680237 CTGAAGGTGCCGGCGACA 62.680 66.667 23.90 15.26 0.00 4.35
6907 8061 2.258591 CAGAGCGTGTACTGCCGT 59.741 61.111 6.99 0.00 0.00 5.68
6919 8073 4.228567 TGCCGTGTGCCGTTCTCA 62.229 61.111 0.00 0.00 40.16 3.27
6921 8075 2.325082 GCCGTGTGCCGTTCTCATT 61.325 57.895 0.00 0.00 33.66 2.57
6997 8151 3.797546 GCGAACCTGCTGCTGCTC 61.798 66.667 17.00 4.90 40.48 4.26
7005 8165 0.237761 CTGCTGCTGCTCTTGTTGTC 59.762 55.000 17.00 0.00 40.48 3.18
7023 8186 0.675837 TCGTCGTCGTTGAGGAGGAT 60.676 55.000 1.33 0.00 36.76 3.24
7025 8188 0.526662 GTCGTCGTTGAGGAGGATGT 59.473 55.000 0.00 0.00 33.86 3.06
7334 8521 2.821546 CAGAACAACTCCGTCAGTCAA 58.178 47.619 0.00 0.00 32.30 3.18
7338 8525 3.032017 ACAACTCCGTCAGTCAATCAG 57.968 47.619 0.00 0.00 32.30 2.90
7339 8526 2.628178 ACAACTCCGTCAGTCAATCAGA 59.372 45.455 0.00 0.00 32.30 3.27
7340 8527 3.259374 ACAACTCCGTCAGTCAATCAGAT 59.741 43.478 0.00 0.00 32.30 2.90
7341 8528 4.462834 ACAACTCCGTCAGTCAATCAGATA 59.537 41.667 0.00 0.00 32.30 1.98
7342 8529 5.127845 ACAACTCCGTCAGTCAATCAGATAT 59.872 40.000 0.00 0.00 32.30 1.63
7343 8530 5.193663 ACTCCGTCAGTCAATCAGATATG 57.806 43.478 0.00 0.00 0.00 1.78
7344 8531 4.038522 ACTCCGTCAGTCAATCAGATATGG 59.961 45.833 0.00 0.00 0.00 2.74
7382 8595 0.536233 ACAGGTGCGGTTGTTGCATA 60.536 50.000 0.00 0.00 45.34 3.14
7388 8601 0.447801 GCGGTTGTTGCATAGTGAGG 59.552 55.000 0.00 0.00 0.00 3.86
7415 8631 1.507141 CTGGTGCCGTTGTCCTTGTC 61.507 60.000 0.00 0.00 0.00 3.18
7416 8632 2.604174 GGTGCCGTTGTCCTTGTCG 61.604 63.158 0.00 0.00 0.00 4.35
7417 8633 2.280524 TGCCGTTGTCCTTGTCGG 60.281 61.111 0.00 0.00 44.86 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 1.073923 GGGATCTGACACCTGGTTGTT 59.926 52.381 0.00 0.00 0.00 2.83
4 5 0.692476 TGGGATCTGACACCTGGTTG 59.308 55.000 0.00 0.00 0.00 3.77
5 6 0.693049 GTGGGATCTGACACCTGGTT 59.307 55.000 0.00 0.00 0.00 3.67
6 7 1.544825 CGTGGGATCTGACACCTGGT 61.545 60.000 0.00 0.00 34.18 4.00
7 8 1.219124 CGTGGGATCTGACACCTGG 59.781 63.158 9.16 0.00 34.18 4.45
8 9 1.135139 CTACGTGGGATCTGACACCTG 59.865 57.143 0.00 1.71 34.18 4.00
9 10 1.005569 TCTACGTGGGATCTGACACCT 59.994 52.381 0.00 2.88 34.18 4.00
10 11 1.471119 TCTACGTGGGATCTGACACC 58.529 55.000 0.00 0.00 34.18 4.16
11 12 2.492484 ACTTCTACGTGGGATCTGACAC 59.508 50.000 0.00 0.00 0.00 3.67
12 13 2.803956 ACTTCTACGTGGGATCTGACA 58.196 47.619 0.00 0.00 0.00 3.58
13 14 3.731264 CGAACTTCTACGTGGGATCTGAC 60.731 52.174 0.00 0.00 0.00 3.51
14 15 2.422479 CGAACTTCTACGTGGGATCTGA 59.578 50.000 0.00 0.00 0.00 3.27
15 16 2.798680 CGAACTTCTACGTGGGATCTG 58.201 52.381 0.00 0.00 0.00 2.90
16 17 1.134560 GCGAACTTCTACGTGGGATCT 59.865 52.381 0.00 0.00 0.00 2.75
17 18 1.557651 GCGAACTTCTACGTGGGATC 58.442 55.000 0.00 0.00 0.00 3.36
18 19 0.175073 GGCGAACTTCTACGTGGGAT 59.825 55.000 0.00 0.00 0.00 3.85
19 20 1.588082 GGCGAACTTCTACGTGGGA 59.412 57.895 0.00 0.00 0.00 4.37
20 21 1.804326 CGGCGAACTTCTACGTGGG 60.804 63.158 0.00 0.00 0.00 4.61
21 22 1.804326 CCGGCGAACTTCTACGTGG 60.804 63.158 9.30 0.00 0.00 4.94
22 23 0.797249 CTCCGGCGAACTTCTACGTG 60.797 60.000 9.30 0.00 0.00 4.49
23 24 1.505353 CTCCGGCGAACTTCTACGT 59.495 57.895 9.30 0.00 0.00 3.57
24 25 1.872679 GCTCCGGCGAACTTCTACG 60.873 63.158 9.30 0.00 0.00 3.51
25 26 4.089983 GCTCCGGCGAACTTCTAC 57.910 61.111 9.30 0.00 0.00 2.59
45 46 3.932580 TAGAGGCGGTGCACTTGCG 62.933 63.158 17.98 13.15 45.83 4.85
46 47 1.450312 ATAGAGGCGGTGCACTTGC 60.450 57.895 17.98 20.00 42.50 4.01
47 48 1.091771 CCATAGAGGCGGTGCACTTG 61.092 60.000 17.98 10.97 0.00 3.16
48 49 1.221840 CCATAGAGGCGGTGCACTT 59.778 57.895 17.98 0.00 0.00 3.16
49 50 0.686441 TACCATAGAGGCGGTGCACT 60.686 55.000 17.98 0.00 43.14 4.40
50 51 0.393077 ATACCATAGAGGCGGTGCAC 59.607 55.000 8.80 8.80 43.14 4.57
51 52 0.679505 GATACCATAGAGGCGGTGCA 59.320 55.000 0.00 0.00 43.14 4.57
52 53 0.037232 GGATACCATAGAGGCGGTGC 60.037 60.000 0.00 0.00 43.14 5.01
53 54 1.338107 TGGATACCATAGAGGCGGTG 58.662 55.000 0.00 0.00 43.14 4.94
54 55 1.902508 CATGGATACCATAGAGGCGGT 59.097 52.381 2.86 0.00 43.15 5.68
55 56 1.406069 GCATGGATACCATAGAGGCGG 60.406 57.143 2.86 0.00 43.15 6.13
56 57 1.737029 CGCATGGATACCATAGAGGCG 60.737 57.143 14.95 14.95 43.15 5.52
57 58 1.276421 ACGCATGGATACCATAGAGGC 59.724 52.381 2.86 2.48 43.15 4.70
58 59 2.932622 GCACGCATGGATACCATAGAGG 60.933 54.545 2.86 0.00 43.15 3.69
59 60 2.289010 TGCACGCATGGATACCATAGAG 60.289 50.000 2.86 3.51 43.15 2.43
60 61 1.691434 TGCACGCATGGATACCATAGA 59.309 47.619 2.86 0.00 43.15 1.98
61 62 2.071540 CTGCACGCATGGATACCATAG 58.928 52.381 2.86 3.93 43.15 2.23
62 63 1.270785 CCTGCACGCATGGATACCATA 60.271 52.381 2.86 0.00 43.15 2.74
63 64 0.535780 CCTGCACGCATGGATACCAT 60.536 55.000 0.00 0.00 46.37 3.55
64 65 1.153188 CCTGCACGCATGGATACCA 60.153 57.895 0.00 0.00 38.19 3.25
65 66 0.882042 CTCCTGCACGCATGGATACC 60.882 60.000 9.63 0.00 0.00 2.73
66 67 0.882042 CCTCCTGCACGCATGGATAC 60.882 60.000 9.63 0.00 0.00 2.24
67 68 1.048160 TCCTCCTGCACGCATGGATA 61.048 55.000 9.63 1.71 0.00 2.59
68 69 1.913951 TTCCTCCTGCACGCATGGAT 61.914 55.000 9.63 0.00 0.00 3.41
69 70 1.913951 ATTCCTCCTGCACGCATGGA 61.914 55.000 9.06 9.06 0.00 3.41
70 71 1.452651 ATTCCTCCTGCACGCATGG 60.453 57.895 0.00 0.00 0.00 3.66
71 72 1.725665 CATTCCTCCTGCACGCATG 59.274 57.895 0.00 0.00 0.00 4.06
72 73 2.117156 GCATTCCTCCTGCACGCAT 61.117 57.895 0.00 0.00 39.46 4.73
73 74 2.747460 GCATTCCTCCTGCACGCA 60.747 61.111 0.00 0.00 39.46 5.24
74 75 3.512516 GGCATTCCTCCTGCACGC 61.513 66.667 0.00 0.00 41.47 5.34
75 76 3.197790 CGGCATTCCTCCTGCACG 61.198 66.667 0.00 0.00 41.47 5.34
76 77 2.045926 ACGGCATTCCTCCTGCAC 60.046 61.111 0.00 0.00 41.47 4.57
77 78 2.046023 CACGGCATTCCTCCTGCA 60.046 61.111 0.00 0.00 41.47 4.41
78 79 3.512516 GCACGGCATTCCTCCTGC 61.513 66.667 0.00 0.00 38.93 4.85
79 80 3.197790 CGCACGGCATTCCTCCTG 61.198 66.667 0.00 0.00 0.00 3.86
80 81 3.390521 TCGCACGGCATTCCTCCT 61.391 61.111 0.00 0.00 0.00 3.69
81 82 3.195698 GTCGCACGGCATTCCTCC 61.196 66.667 0.00 0.00 0.00 4.30
82 83 3.554692 CGTCGCACGGCATTCCTC 61.555 66.667 0.00 0.00 38.08 3.71
91 92 0.595053 ATCTAGCAATCCGTCGCACG 60.595 55.000 2.27 2.27 42.11 5.34
92 93 1.132588 GATCTAGCAATCCGTCGCAC 58.867 55.000 0.00 0.00 0.00 5.34
93 94 0.032130 GGATCTAGCAATCCGTCGCA 59.968 55.000 0.00 0.00 36.14 5.10
94 95 2.815722 GGATCTAGCAATCCGTCGC 58.184 57.895 0.00 0.00 36.14 5.19
114 115 8.868522 ATATATTTTTCCCGTGATGTGATCAT 57.131 30.769 0.00 0.00 42.04 2.45
115 116 7.936301 TGATATATTTTTCCCGTGATGTGATCA 59.064 33.333 0.00 0.00 36.84 2.92
116 117 8.322906 TGATATATTTTTCCCGTGATGTGATC 57.677 34.615 0.00 0.00 0.00 2.92
117 118 8.690203 TTGATATATTTTTCCCGTGATGTGAT 57.310 30.769 0.00 0.00 0.00 3.06
118 119 8.690203 ATTGATATATTTTTCCCGTGATGTGA 57.310 30.769 0.00 0.00 0.00 3.58
119 120 9.748708 AAATTGATATATTTTTCCCGTGATGTG 57.251 29.630 0.00 0.00 0.00 3.21
144 145 5.142061 TGTACTCGGAGATGCACTAAAAA 57.858 39.130 12.86 0.00 33.89 1.94
145 146 4.794278 TGTACTCGGAGATGCACTAAAA 57.206 40.909 12.86 0.00 33.89 1.52
146 147 4.794278 TTGTACTCGGAGATGCACTAAA 57.206 40.909 12.86 0.00 33.89 1.85
147 148 5.109210 CAATTGTACTCGGAGATGCACTAA 58.891 41.667 12.86 0.00 33.89 2.24
148 149 4.441495 CCAATTGTACTCGGAGATGCACTA 60.441 45.833 12.86 1.89 33.89 2.74
149 150 3.525537 CAATTGTACTCGGAGATGCACT 58.474 45.455 12.86 0.00 33.89 4.40
150 151 2.609459 CCAATTGTACTCGGAGATGCAC 59.391 50.000 12.86 4.68 33.89 4.57
151 152 2.236146 ACCAATTGTACTCGGAGATGCA 59.764 45.455 12.86 4.56 33.89 3.96
152 153 2.866762 GACCAATTGTACTCGGAGATGC 59.133 50.000 12.86 1.93 33.89 3.91
153 154 3.458189 GGACCAATTGTACTCGGAGATG 58.542 50.000 12.86 1.14 33.89 2.90
154 155 2.100916 CGGACCAATTGTACTCGGAGAT 59.899 50.000 12.86 0.00 33.89 2.75
155 156 1.475280 CGGACCAATTGTACTCGGAGA 59.525 52.381 12.86 0.00 0.00 3.71
156 157 1.470979 CCGGACCAATTGTACTCGGAG 60.471 57.143 16.53 2.83 37.32 4.63
157 158 0.533491 CCGGACCAATTGTACTCGGA 59.467 55.000 16.53 0.00 37.32 4.55
158 159 0.248289 ACCGGACCAATTGTACTCGG 59.752 55.000 9.46 18.58 39.50 4.63
159 160 2.925563 GTTACCGGACCAATTGTACTCG 59.074 50.000 9.46 3.10 0.00 4.18
160 161 3.929094 TGTTACCGGACCAATTGTACTC 58.071 45.455 9.46 0.00 0.00 2.59
161 162 4.354893 TTGTTACCGGACCAATTGTACT 57.645 40.909 9.46 0.00 0.00 2.73
162 163 5.435820 TTTTGTTACCGGACCAATTGTAC 57.564 39.130 9.46 0.00 0.00 2.90
163 164 6.651975 ATTTTTGTTACCGGACCAATTGTA 57.348 33.333 9.46 0.00 0.00 2.41
164 165 5.538849 ATTTTTGTTACCGGACCAATTGT 57.461 34.783 9.46 0.00 0.00 2.71
165 166 7.948278 TTAATTTTTGTTACCGGACCAATTG 57.052 32.000 9.46 0.00 0.00 2.32
166 167 9.863845 CTATTAATTTTTGTTACCGGACCAATT 57.136 29.630 9.46 4.65 0.00 2.32
167 168 9.027202 ACTATTAATTTTTGTTACCGGACCAAT 57.973 29.630 9.46 0.00 0.00 3.16
168 169 8.406730 ACTATTAATTTTTGTTACCGGACCAA 57.593 30.769 9.46 4.61 0.00 3.67
169 170 7.999450 ACTATTAATTTTTGTTACCGGACCA 57.001 32.000 9.46 0.00 0.00 4.02
189 190 9.745880 ACAAATCGATTCGACACTAATTACTAT 57.254 29.630 11.83 0.00 39.18 2.12
191 192 9.577110 TTACAAATCGATTCGACACTAATTACT 57.423 29.630 11.83 0.00 39.18 2.24
192 193 9.831054 CTTACAAATCGATTCGACACTAATTAC 57.169 33.333 11.83 0.00 39.18 1.89
193 194 9.577110 ACTTACAAATCGATTCGACACTAATTA 57.423 29.630 11.83 0.00 39.18 1.40
194 195 8.475331 ACTTACAAATCGATTCGACACTAATT 57.525 30.769 11.83 0.00 39.18 1.40
195 196 8.475331 AACTTACAAATCGATTCGACACTAAT 57.525 30.769 11.83 0.00 39.18 1.73
196 197 7.878477 AACTTACAAATCGATTCGACACTAA 57.122 32.000 11.83 4.43 39.18 2.24
197 198 8.969121 TTAACTTACAAATCGATTCGACACTA 57.031 30.769 11.83 0.00 39.18 2.74
198 199 7.878477 TTAACTTACAAATCGATTCGACACT 57.122 32.000 11.83 0.00 39.18 3.55
199 200 9.195831 GAATTAACTTACAAATCGATTCGACAC 57.804 33.333 11.83 0.00 39.18 3.67
200 201 8.927721 TGAATTAACTTACAAATCGATTCGACA 58.072 29.630 11.83 0.00 39.18 4.35
201 202 9.749490 TTGAATTAACTTACAAATCGATTCGAC 57.251 29.630 11.83 0.00 39.18 4.20
241 242 8.137437 GCACATGTAATTAATTGTCTGGCTAAT 58.863 33.333 11.05 0.00 0.00 1.73
242 243 7.121907 TGCACATGTAATTAATTGTCTGGCTAA 59.878 33.333 11.05 0.00 0.00 3.09
243 244 6.601217 TGCACATGTAATTAATTGTCTGGCTA 59.399 34.615 11.05 0.00 0.00 3.93
244 245 5.418524 TGCACATGTAATTAATTGTCTGGCT 59.581 36.000 11.05 0.00 0.00 4.75
245 246 5.649557 TGCACATGTAATTAATTGTCTGGC 58.350 37.500 11.05 7.97 0.00 4.85
246 247 8.706492 AATTGCACATGTAATTAATTGTCTGG 57.294 30.769 11.05 0.00 38.31 3.86
256 257 9.781633 ATGGCATAATTAATTGCACATGTAATT 57.218 25.926 11.05 11.81 41.83 1.40
257 258 9.781633 AATGGCATAATTAATTGCACATGTAAT 57.218 25.926 11.05 0.00 40.66 1.89
258 259 9.610705 AAATGGCATAATTAATTGCACATGTAA 57.389 25.926 11.05 0.00 40.66 2.41
260 261 9.610705 TTAAATGGCATAATTAATTGCACATGT 57.389 25.926 11.05 9.99 40.66 3.21
345 346 9.745018 AGTATAATGTTATCTGCATGCCTAATT 57.255 29.630 16.68 7.95 0.00 1.40
346 347 9.745018 AAGTATAATGTTATCTGCATGCCTAAT 57.255 29.630 16.68 8.44 0.00 1.73
347 348 9.219603 GAAGTATAATGTTATCTGCATGCCTAA 57.780 33.333 16.68 7.75 0.00 2.69
348 349 7.545615 CGAAGTATAATGTTATCTGCATGCCTA 59.454 37.037 16.68 2.95 0.00 3.93
349 350 6.369890 CGAAGTATAATGTTATCTGCATGCCT 59.630 38.462 16.68 2.24 0.00 4.75
350 351 6.147821 ACGAAGTATAATGTTATCTGCATGCC 59.852 38.462 16.68 0.00 41.94 4.40
351 352 7.121974 ACGAAGTATAATGTTATCTGCATGC 57.878 36.000 11.82 11.82 41.94 4.06
355 356 9.939047 CGATAAACGAAGTATAATGTTATCTGC 57.061 33.333 0.00 0.00 45.00 4.26
385 386 7.540745 GTGGATTGCGTGAAGTATAATGTTTTT 59.459 33.333 0.00 0.00 0.00 1.94
386 387 7.027161 GTGGATTGCGTGAAGTATAATGTTTT 58.973 34.615 0.00 0.00 0.00 2.43
387 388 6.374333 AGTGGATTGCGTGAAGTATAATGTTT 59.626 34.615 0.00 0.00 0.00 2.83
388 389 5.880332 AGTGGATTGCGTGAAGTATAATGTT 59.120 36.000 0.00 0.00 0.00 2.71
389 390 5.428253 AGTGGATTGCGTGAAGTATAATGT 58.572 37.500 0.00 0.00 0.00 2.71
390 391 5.991328 AGTGGATTGCGTGAAGTATAATG 57.009 39.130 0.00 0.00 0.00 1.90
391 392 7.336931 AGAAAAGTGGATTGCGTGAAGTATAAT 59.663 33.333 0.00 0.00 0.00 1.28
392 393 6.653320 AGAAAAGTGGATTGCGTGAAGTATAA 59.347 34.615 0.00 0.00 0.00 0.98
393 394 6.170506 AGAAAAGTGGATTGCGTGAAGTATA 58.829 36.000 0.00 0.00 0.00 1.47
394 395 5.003804 AGAAAAGTGGATTGCGTGAAGTAT 58.996 37.500 0.00 0.00 0.00 2.12
395 396 4.385825 AGAAAAGTGGATTGCGTGAAGTA 58.614 39.130 0.00 0.00 0.00 2.24
396 397 3.214328 AGAAAAGTGGATTGCGTGAAGT 58.786 40.909 0.00 0.00 0.00 3.01
397 398 3.904136 AGAAAAGTGGATTGCGTGAAG 57.096 42.857 0.00 0.00 0.00 3.02
398 399 4.819630 AGTTAGAAAAGTGGATTGCGTGAA 59.180 37.500 0.00 0.00 0.00 3.18
399 400 4.213270 CAGTTAGAAAAGTGGATTGCGTGA 59.787 41.667 0.00 0.00 33.15 4.35
400 401 4.024048 ACAGTTAGAAAAGTGGATTGCGTG 60.024 41.667 0.00 0.00 39.89 5.34
401 402 4.134563 ACAGTTAGAAAAGTGGATTGCGT 58.865 39.130 0.00 0.00 39.89 5.24
402 403 4.749245 ACAGTTAGAAAAGTGGATTGCG 57.251 40.909 0.00 0.00 39.89 4.85
403 404 6.319141 AGAACAGTTAGAAAAGTGGATTGC 57.681 37.500 0.00 0.00 39.89 3.56
404 405 7.862873 GGAAAGAACAGTTAGAAAAGTGGATTG 59.137 37.037 0.00 0.00 39.89 2.67
405 406 7.559897 TGGAAAGAACAGTTAGAAAAGTGGATT 59.440 33.333 0.00 0.00 39.89 3.01
406 407 7.060421 TGGAAAGAACAGTTAGAAAAGTGGAT 58.940 34.615 0.00 0.00 39.89 3.41
407 408 6.419791 TGGAAAGAACAGTTAGAAAAGTGGA 58.580 36.000 0.00 0.00 39.89 4.02
408 409 6.693315 TGGAAAGAACAGTTAGAAAAGTGG 57.307 37.500 0.00 0.00 39.89 4.00
426 427 4.637534 GCAGATTATGAGCAGTCTTGGAAA 59.362 41.667 0.00 0.00 0.00 3.13
427 428 4.194640 GCAGATTATGAGCAGTCTTGGAA 58.805 43.478 0.00 0.00 0.00 3.53
428 429 3.432749 GGCAGATTATGAGCAGTCTTGGA 60.433 47.826 0.00 0.00 0.00 3.53
429 430 2.877168 GGCAGATTATGAGCAGTCTTGG 59.123 50.000 0.00 0.00 0.00 3.61
430 431 2.543012 CGGCAGATTATGAGCAGTCTTG 59.457 50.000 0.00 0.00 0.00 3.02
431 432 2.831333 CGGCAGATTATGAGCAGTCTT 58.169 47.619 0.00 0.00 0.00 3.01
432 433 1.539929 GCGGCAGATTATGAGCAGTCT 60.540 52.381 0.00 0.00 35.15 3.24
433 434 0.864455 GCGGCAGATTATGAGCAGTC 59.136 55.000 0.00 0.00 35.15 3.51
434 435 0.467384 AGCGGCAGATTATGAGCAGT 59.533 50.000 1.45 0.00 36.79 4.40
435 436 1.590932 AAGCGGCAGATTATGAGCAG 58.409 50.000 1.45 0.00 36.79 4.24
436 437 2.042686 AAAGCGGCAGATTATGAGCA 57.957 45.000 1.45 0.00 36.79 4.26
437 438 2.872245 TGTAAAGCGGCAGATTATGAGC 59.128 45.455 1.45 0.00 35.23 4.26
438 439 5.446709 CAATGTAAAGCGGCAGATTATGAG 58.553 41.667 1.45 0.00 0.00 2.90
439 440 4.261155 GCAATGTAAAGCGGCAGATTATGA 60.261 41.667 1.45 0.00 0.00 2.15
440 441 3.976942 GCAATGTAAAGCGGCAGATTATG 59.023 43.478 1.45 0.00 0.00 1.90
441 442 3.004734 GGCAATGTAAAGCGGCAGATTAT 59.995 43.478 1.45 0.00 0.00 1.28
442 443 2.357637 GGCAATGTAAAGCGGCAGATTA 59.642 45.455 1.45 0.00 0.00 1.75
443 444 1.134946 GGCAATGTAAAGCGGCAGATT 59.865 47.619 1.45 0.00 0.00 2.40
444 445 0.740737 GGCAATGTAAAGCGGCAGAT 59.259 50.000 1.45 0.00 0.00 2.90
445 446 0.607762 TGGCAATGTAAAGCGGCAGA 60.608 50.000 1.45 0.00 0.00 4.26
446 447 0.456653 GTGGCAATGTAAAGCGGCAG 60.457 55.000 1.45 0.00 34.28 4.85
447 448 1.583986 GTGGCAATGTAAAGCGGCA 59.416 52.632 1.45 0.00 0.00 5.69
448 449 1.153842 GGTGGCAATGTAAAGCGGC 60.154 57.895 0.00 0.00 0.00 6.53
449 450 0.109319 GTGGTGGCAATGTAAAGCGG 60.109 55.000 0.00 0.00 0.00 5.52
450 451 0.881118 AGTGGTGGCAATGTAAAGCG 59.119 50.000 0.00 0.00 0.00 4.68
451 452 2.162681 AGAGTGGTGGCAATGTAAAGC 58.837 47.619 0.00 0.00 0.00 3.51
452 453 3.820467 TGAAGAGTGGTGGCAATGTAAAG 59.180 43.478 0.00 0.00 0.00 1.85
453 454 3.826524 TGAAGAGTGGTGGCAATGTAAA 58.173 40.909 0.00 0.00 0.00 2.01
454 455 3.500448 TGAAGAGTGGTGGCAATGTAA 57.500 42.857 0.00 0.00 0.00 2.41
455 456 3.500448 TTGAAGAGTGGTGGCAATGTA 57.500 42.857 0.00 0.00 0.00 2.29
456 457 2.362077 GTTTGAAGAGTGGTGGCAATGT 59.638 45.455 0.00 0.00 0.00 2.71
457 458 2.361757 TGTTTGAAGAGTGGTGGCAATG 59.638 45.455 0.00 0.00 0.00 2.82
458 459 2.362077 GTGTTTGAAGAGTGGTGGCAAT 59.638 45.455 0.00 0.00 0.00 3.56
459 460 1.748493 GTGTTTGAAGAGTGGTGGCAA 59.252 47.619 0.00 0.00 0.00 4.52
460 461 1.064758 AGTGTTTGAAGAGTGGTGGCA 60.065 47.619 0.00 0.00 0.00 4.92
461 462 1.334869 CAGTGTTTGAAGAGTGGTGGC 59.665 52.381 0.00 0.00 0.00 5.01
462 463 2.643551 ACAGTGTTTGAAGAGTGGTGG 58.356 47.619 0.00 0.00 0.00 4.61
463 464 4.662145 GAAACAGTGTTTGAAGAGTGGTG 58.338 43.478 25.46 0.00 0.00 4.17
464 465 3.374058 CGAAACAGTGTTTGAAGAGTGGT 59.626 43.478 25.46 0.00 0.00 4.16
465 466 3.374058 ACGAAACAGTGTTTGAAGAGTGG 59.626 43.478 25.46 4.16 0.00 4.00
466 467 4.494199 GGACGAAACAGTGTTTGAAGAGTG 60.494 45.833 25.46 8.65 0.00 3.51
467 468 3.621715 GGACGAAACAGTGTTTGAAGAGT 59.378 43.478 25.46 15.64 0.00 3.24
468 469 3.871594 AGGACGAAACAGTGTTTGAAGAG 59.128 43.478 25.46 12.93 0.00 2.85
469 470 3.621268 CAGGACGAAACAGTGTTTGAAGA 59.379 43.478 25.46 0.00 0.00 2.87
470 471 3.374058 ACAGGACGAAACAGTGTTTGAAG 59.626 43.478 25.46 17.33 0.00 3.02
471 472 3.340034 ACAGGACGAAACAGTGTTTGAA 58.660 40.909 25.46 0.00 0.00 2.69
472 473 2.980568 ACAGGACGAAACAGTGTTTGA 58.019 42.857 25.46 0.00 0.00 2.69
473 474 3.303132 GCTACAGGACGAAACAGTGTTTG 60.303 47.826 25.46 18.27 0.00 2.93
474 475 2.870411 GCTACAGGACGAAACAGTGTTT 59.130 45.455 21.00 21.00 0.00 2.83
475 476 2.159014 TGCTACAGGACGAAACAGTGTT 60.159 45.455 1.64 1.64 0.00 3.32
476 477 1.411246 TGCTACAGGACGAAACAGTGT 59.589 47.619 0.00 0.00 0.00 3.55
477 478 2.148916 TGCTACAGGACGAAACAGTG 57.851 50.000 0.00 0.00 0.00 3.66
478 479 2.159014 TGTTGCTACAGGACGAAACAGT 60.159 45.455 0.00 0.00 0.00 3.55
479 480 2.221055 GTGTTGCTACAGGACGAAACAG 59.779 50.000 0.00 0.00 34.24 3.16
480 481 2.206750 GTGTTGCTACAGGACGAAACA 58.793 47.619 0.00 0.00 34.24 2.83
481 482 2.033151 GTGTGTTGCTACAGGACGAAAC 60.033 50.000 0.00 0.00 34.24 2.78
482 483 2.206750 GTGTGTTGCTACAGGACGAAA 58.793 47.619 0.00 0.00 34.24 3.46
483 484 1.860676 GTGTGTTGCTACAGGACGAA 58.139 50.000 0.00 0.00 34.24 3.85
484 485 0.318360 CGTGTGTTGCTACAGGACGA 60.318 55.000 20.77 0.00 40.92 4.20
485 486 0.596600 ACGTGTGTTGCTACAGGACG 60.597 55.000 22.52 22.52 42.67 4.79
486 487 0.859232 CACGTGTGTTGCTACAGGAC 59.141 55.000 7.58 0.93 39.16 3.85
487 488 0.462375 ACACGTGTGTTGCTACAGGA 59.538 50.000 22.71 0.00 41.83 3.86
488 489 2.143008 TACACGTGTGTTGCTACAGG 57.857 50.000 30.83 4.54 41.83 4.00
489 490 4.725556 AATTACACGTGTGTTGCTACAG 57.274 40.909 30.83 0.00 41.83 2.74
490 491 4.150980 GCTAATTACACGTGTGTTGCTACA 59.849 41.667 30.83 5.34 41.83 2.74
491 492 4.387862 AGCTAATTACACGTGTGTTGCTAC 59.612 41.667 30.83 14.19 41.83 3.58
492 493 4.562082 AGCTAATTACACGTGTGTTGCTA 58.438 39.130 30.83 7.00 41.83 3.49
493 494 3.399330 AGCTAATTACACGTGTGTTGCT 58.601 40.909 30.83 25.58 41.83 3.91
494 495 3.806316 AGCTAATTACACGTGTGTTGC 57.194 42.857 30.83 24.03 41.83 4.17
495 496 6.296605 CAACTAGCTAATTACACGTGTGTTG 58.703 40.000 30.83 24.83 41.83 3.33
496 497 5.407387 CCAACTAGCTAATTACACGTGTGTT 59.593 40.000 30.83 24.57 41.83 3.32
497 498 4.927425 CCAACTAGCTAATTACACGTGTGT 59.073 41.667 30.83 16.43 46.87 3.72
498 499 4.927425 ACCAACTAGCTAATTACACGTGTG 59.073 41.667 30.83 14.76 0.00 3.82
499 500 5.143376 ACCAACTAGCTAATTACACGTGT 57.857 39.130 26.52 26.52 0.00 4.49
500 501 7.766219 ATAACCAACTAGCTAATTACACGTG 57.234 36.000 15.48 15.48 0.00 4.49
501 502 9.874205 TTTATAACCAACTAGCTAATTACACGT 57.126 29.630 0.00 0.00 0.00 4.49
534 535 6.256912 ACTTTGTAACCAACTCGTCAAAAA 57.743 33.333 0.00 0.00 0.00 1.94
535 536 5.883503 ACTTTGTAACCAACTCGTCAAAA 57.116 34.783 0.00 0.00 0.00 2.44
536 537 5.883503 AACTTTGTAACCAACTCGTCAAA 57.116 34.783 0.00 0.00 0.00 2.69
537 538 6.987992 AGATAACTTTGTAACCAACTCGTCAA 59.012 34.615 0.00 0.00 0.00 3.18
538 539 6.518493 AGATAACTTTGTAACCAACTCGTCA 58.482 36.000 0.00 0.00 0.00 4.35
539 540 7.288672 CAAGATAACTTTGTAACCAACTCGTC 58.711 38.462 0.00 0.00 33.70 4.20
540 541 6.293244 GCAAGATAACTTTGTAACCAACTCGT 60.293 38.462 0.00 0.00 33.70 4.18
541 542 6.077838 GCAAGATAACTTTGTAACCAACTCG 58.922 40.000 0.00 0.00 33.70 4.18
542 543 6.016610 TGGCAAGATAACTTTGTAACCAACTC 60.017 38.462 0.00 0.00 33.70 3.01
543 544 5.830991 TGGCAAGATAACTTTGTAACCAACT 59.169 36.000 0.00 0.00 33.70 3.16
544 545 6.079424 TGGCAAGATAACTTTGTAACCAAC 57.921 37.500 0.00 0.00 33.70 3.77
545 546 6.716934 TTGGCAAGATAACTTTGTAACCAA 57.283 33.333 0.00 0.00 33.70 3.67
546 547 6.719370 AGATTGGCAAGATAACTTTGTAACCA 59.281 34.615 5.96 0.00 33.70 3.67
547 548 7.094377 TGAGATTGGCAAGATAACTTTGTAACC 60.094 37.037 5.96 0.00 33.70 2.85
548 549 7.816640 TGAGATTGGCAAGATAACTTTGTAAC 58.183 34.615 5.96 0.00 33.70 2.50
549 550 7.994425 TGAGATTGGCAAGATAACTTTGTAA 57.006 32.000 5.96 0.00 33.70 2.41
550 551 9.679661 TTATGAGATTGGCAAGATAACTTTGTA 57.320 29.630 5.96 0.00 33.70 2.41
551 552 8.579850 TTATGAGATTGGCAAGATAACTTTGT 57.420 30.769 5.96 0.00 33.70 2.83
552 553 9.859427 TTTTATGAGATTGGCAAGATAACTTTG 57.141 29.630 5.96 0.00 33.70 2.77
554 555 8.689972 CCTTTTATGAGATTGGCAAGATAACTT 58.310 33.333 5.96 0.00 36.73 2.66
555 556 7.836183 ACCTTTTATGAGATTGGCAAGATAACT 59.164 33.333 5.96 0.00 0.00 2.24
556 557 8.000780 ACCTTTTATGAGATTGGCAAGATAAC 57.999 34.615 5.96 0.00 0.00 1.89
557 558 8.469200 CAACCTTTTATGAGATTGGCAAGATAA 58.531 33.333 5.96 3.28 0.00 1.75
558 559 7.416664 GCAACCTTTTATGAGATTGGCAAGATA 60.417 37.037 5.96 0.00 0.00 1.98
559 560 6.628844 GCAACCTTTTATGAGATTGGCAAGAT 60.629 38.462 5.96 0.00 0.00 2.40
560 561 5.336690 GCAACCTTTTATGAGATTGGCAAGA 60.337 40.000 5.96 0.00 0.00 3.02
561 562 4.866486 GCAACCTTTTATGAGATTGGCAAG 59.134 41.667 5.96 0.00 0.00 4.01
562 563 4.322650 GGCAACCTTTTATGAGATTGGCAA 60.323 41.667 0.68 0.68 40.99 4.52
563 564 3.195396 GGCAACCTTTTATGAGATTGGCA 59.805 43.478 1.13 0.00 40.99 4.92
564 565 3.195396 TGGCAACCTTTTATGAGATTGGC 59.805 43.478 0.00 0.00 41.50 4.52
565 566 5.404466 TTGGCAACCTTTTATGAGATTGG 57.596 39.130 0.00 0.00 0.00 3.16
566 567 6.875195 ACAATTGGCAACCTTTTATGAGATTG 59.125 34.615 10.83 0.75 0.00 2.67
567 568 7.008021 ACAATTGGCAACCTTTTATGAGATT 57.992 32.000 10.83 0.00 0.00 2.40
568 569 6.610075 ACAATTGGCAACCTTTTATGAGAT 57.390 33.333 10.83 0.00 0.00 2.75
569 570 6.222389 CAACAATTGGCAACCTTTTATGAGA 58.778 36.000 10.83 0.00 0.00 3.27
570 571 5.409214 CCAACAATTGGCAACCTTTTATGAG 59.591 40.000 10.83 0.00 45.17 2.90
571 572 5.303971 CCAACAATTGGCAACCTTTTATGA 58.696 37.500 10.83 0.00 45.17 2.15
572 573 5.610235 CCAACAATTGGCAACCTTTTATG 57.390 39.130 10.83 0.00 45.17 1.90
585 586 3.181477 TGGACAAGACTTGCCAACAATTG 60.181 43.478 21.63 3.24 35.12 2.32
586 587 3.030291 TGGACAAGACTTGCCAACAATT 58.970 40.909 21.63 0.62 35.12 2.32
587 588 2.665165 TGGACAAGACTTGCCAACAAT 58.335 42.857 21.63 1.27 35.12 2.71
588 589 2.136298 TGGACAAGACTTGCCAACAA 57.864 45.000 21.63 5.89 35.12 2.83
589 590 2.136298 TTGGACAAGACTTGCCAACA 57.864 45.000 26.63 14.89 39.87 3.33
590 591 3.733443 ATTTGGACAAGACTTGCCAAC 57.267 42.857 28.59 14.25 42.37 3.77
591 592 7.531857 TTAATATTTGGACAAGACTTGCCAA 57.468 32.000 26.63 26.63 41.60 4.52
592 593 7.716799 ATTAATATTTGGACAAGACTTGCCA 57.283 32.000 20.62 20.62 35.86 4.92
593 594 9.120538 TCTATTAATATTTGGACAAGACTTGCC 57.879 33.333 15.24 16.30 0.00 4.52
601 602 9.920946 AGGAAGCTTCTATTAATATTTGGACAA 57.079 29.630 25.05 0.00 0.00 3.18
602 603 9.920946 AAGGAAGCTTCTATTAATATTTGGACA 57.079 29.630 25.05 0.00 0.00 4.02
604 605 9.920946 ACAAGGAAGCTTCTATTAATATTTGGA 57.079 29.630 25.05 0.00 0.00 3.53
608 609 9.905713 TGTGACAAGGAAGCTTCTATTAATATT 57.094 29.630 25.05 5.83 0.00 1.28
610 611 9.905713 AATGTGACAAGGAAGCTTCTATTAATA 57.094 29.630 25.05 7.46 0.00 0.98
611 612 8.680903 CAATGTGACAAGGAAGCTTCTATTAAT 58.319 33.333 25.05 11.98 0.00 1.40
612 613 7.362056 GCAATGTGACAAGGAAGCTTCTATTAA 60.362 37.037 25.05 5.44 0.00 1.40
613 614 6.094048 GCAATGTGACAAGGAAGCTTCTATTA 59.906 38.462 25.05 6.62 0.00 0.98
614 615 5.105997 GCAATGTGACAAGGAAGCTTCTATT 60.106 40.000 25.05 17.07 0.00 1.73
615 616 4.397417 GCAATGTGACAAGGAAGCTTCTAT 59.603 41.667 25.05 12.16 0.00 1.98
627 628 1.391577 AGTGCTGTGCAATGTGACAA 58.608 45.000 0.00 0.00 41.47 3.18
628 629 1.334556 GAAGTGCTGTGCAATGTGACA 59.665 47.619 0.00 0.00 41.47 3.58
642 643 0.663153 GTGGAGGTTGTGTGAAGTGC 59.337 55.000 0.00 0.00 0.00 4.40
646 647 1.680735 GCATTGTGGAGGTTGTGTGAA 59.319 47.619 0.00 0.00 0.00 3.18
657 658 2.897271 ATTGGTAGGTGCATTGTGGA 57.103 45.000 0.00 0.00 0.00 4.02
689 730 3.319137 ACTGCTGCTTTGAGATTCGTA 57.681 42.857 0.00 0.00 0.00 3.43
787 833 2.993264 GGAGGTGGGGACGAACGA 60.993 66.667 0.14 0.00 0.00 3.85
893 939 4.530857 GGATGACGGAGGCGGGTG 62.531 72.222 0.00 0.00 0.00 4.61
960 1015 3.971109 AAAACCCTAGCTCCGGCGC 62.971 63.158 8.80 8.80 44.37 6.53
961 1016 1.814169 GAAAACCCTAGCTCCGGCG 60.814 63.158 0.00 0.00 44.37 6.46
962 1017 1.814169 CGAAAACCCTAGCTCCGGC 60.814 63.158 0.00 0.00 39.06 6.13
1197 1522 1.635663 AAAGCCGAATTCCACGCGAG 61.636 55.000 15.93 4.16 0.00 5.03
1200 1525 1.154035 CCAAAGCCGAATTCCACGC 60.154 57.895 0.00 0.00 0.00 5.34
1203 1528 0.602562 CAAGCCAAAGCCGAATTCCA 59.397 50.000 0.00 0.00 41.25 3.53
1268 1616 5.049828 TGATGTGCACTATTTCCATCTACG 58.950 41.667 19.41 0.00 34.44 3.51
1322 1670 3.060003 GCTAATGCAGAGAACAGCGTATG 60.060 47.826 2.62 0.00 39.41 2.39
1370 1719 2.279073 CTACTCCCCTGAGCCGGA 59.721 66.667 5.05 0.00 42.74 5.14
1371 1720 2.042843 ACTACTCCCCTGAGCCGG 60.043 66.667 0.00 0.00 42.74 6.13
1482 1832 3.641906 ACGGGACAACCTATAGAATGAGG 59.358 47.826 0.00 0.00 38.92 3.86
1494 1844 1.800681 GCTTATGCACGGGACAACC 59.199 57.895 0.00 0.00 39.41 3.77
1500 1850 1.695893 CTCACACGCTTATGCACGGG 61.696 60.000 0.00 0.00 39.64 5.28
1556 1907 1.914634 AGCTTATGCAGAGAACGACG 58.085 50.000 3.16 0.00 42.74 5.12
1678 2313 8.943909 ATAACAAGTTCCTAATACTACAGCAC 57.056 34.615 0.00 0.00 0.00 4.40
1826 2502 7.811236 CAGCTATTTCGGCAAATAAATCATGAT 59.189 33.333 1.18 1.18 34.64 2.45
1827 2503 7.140705 CAGCTATTTCGGCAAATAAATCATGA 58.859 34.615 0.00 0.00 34.64 3.07
1828 2504 6.919662 ACAGCTATTTCGGCAAATAAATCATG 59.080 34.615 0.00 0.00 34.64 3.07
1829 2505 7.013655 AGACAGCTATTTCGGCAAATAAATCAT 59.986 33.333 0.00 0.00 34.64 2.45
1830 2506 6.318648 AGACAGCTATTTCGGCAAATAAATCA 59.681 34.615 0.00 0.00 34.64 2.57
1831 2507 6.634436 CAGACAGCTATTTCGGCAAATAAATC 59.366 38.462 0.00 0.00 34.64 2.17
1832 2508 6.095440 ACAGACAGCTATTTCGGCAAATAAAT 59.905 34.615 0.00 0.00 34.64 1.40
1840 2516 3.522553 ACTAACAGACAGCTATTTCGGC 58.477 45.455 0.00 0.00 0.00 5.54
1842 2518 6.706055 TTTGACTAACAGACAGCTATTTCG 57.294 37.500 0.00 0.00 0.00 3.46
1897 2573 6.437162 ACACTGCAGAACCAAACCAATATATT 59.563 34.615 23.35 0.00 0.00 1.28
1909 2585 2.346766 ACATCAACACTGCAGAACCA 57.653 45.000 23.35 0.00 0.00 3.67
1911 2587 3.698029 ACAACATCAACACTGCAGAAC 57.302 42.857 23.35 0.00 0.00 3.01
2019 2705 6.656270 AGACAAACAGATGATGATTAGCAACA 59.344 34.615 0.00 0.00 33.56 3.33
2030 2716 6.395426 TTTTGAAGCAGACAAACAGATGAT 57.605 33.333 0.00 0.00 37.05 2.45
2031 2717 5.833406 TTTTGAAGCAGACAAACAGATGA 57.167 34.783 0.00 0.00 37.05 2.92
2042 2728 3.818210 TGCGAACCTATTTTTGAAGCAGA 59.182 39.130 0.00 0.00 0.00 4.26
2045 2731 5.687285 CCATATGCGAACCTATTTTTGAAGC 59.313 40.000 0.00 0.00 0.00 3.86
2141 2827 5.408299 CACACAGTTTACTGATCCGAAATGA 59.592 40.000 16.31 0.00 46.59 2.57
2267 2953 2.441410 TCTATATCTGCAGGCTCTCCG 58.559 52.381 15.13 0.00 37.47 4.63
2496 3191 2.079925 GACTAACAAAGGCAGCTCTGG 58.920 52.381 0.00 0.00 31.12 3.86
2809 3504 7.275341 ACAAAATGGCATGAAACATAACATACG 59.725 33.333 0.00 0.00 0.00 3.06
2864 3559 4.034510 AGACTTCTCTGCAAACAAAAGACG 59.965 41.667 0.00 0.00 0.00 4.18
2906 3601 0.663153 GCTGCGGAACACAGAAAAGT 59.337 50.000 0.00 0.00 41.72 2.66
3657 4352 0.469892 CTGCAGGAACTTTTGGGGGT 60.470 55.000 5.57 0.00 34.60 4.95
3780 4475 5.830457 ACTAGATACCCGGGTAACTTTAGAC 59.170 44.000 38.87 21.20 35.72 2.59
3989 4684 7.119262 CCCTAACTCCACAATTGTTACAGTTAG 59.881 40.741 29.81 29.81 37.92 2.34
4326 5021 0.855349 CTTTTCCGGAGATGCGATCG 59.145 55.000 11.69 11.69 0.00 3.69
4557 5263 1.202903 GCTGAGGAGCCCATCATCATT 60.203 52.381 0.00 0.00 46.88 2.57
4689 5395 4.223032 TCATCTGGAGAGGTAACCAAAGAC 59.777 45.833 0.00 0.00 35.67 3.01
4720 5426 7.870445 TGTAAATGTTTTACCAGAATCTTTGGC 59.130 33.333 7.47 0.00 39.39 4.52
4739 5445 5.102953 TGAGGAAGGACTGGATGTAAATG 57.897 43.478 0.00 0.00 0.00 2.32
4756 5462 0.250467 GCAGCAAGGTGAACTGAGGA 60.250 55.000 3.05 0.00 33.10 3.71
4757 5463 0.535780 TGCAGCAAGGTGAACTGAGG 60.536 55.000 3.05 0.00 33.10 3.86
4758 5464 1.467734 GATGCAGCAAGGTGAACTGAG 59.532 52.381 0.00 0.00 33.10 3.35
4759 5465 1.072806 AGATGCAGCAAGGTGAACTGA 59.927 47.619 4.07 0.00 33.10 3.41
4778 5484 4.366586 ACATGCATCAGACACTAATCGAG 58.633 43.478 0.00 0.00 0.00 4.04
4908 5614 2.455032 CTCATGTCGTAGAGGAAAGCG 58.545 52.381 0.00 0.00 36.95 4.68
5346 6052 5.971846 AATCTGTACAGATGCGCTGAATGAT 60.972 40.000 33.48 14.32 46.75 2.45
5348 6054 3.558829 AATCTGTACAGATGCGCTGAATG 59.441 43.478 33.48 4.89 46.75 2.67
5439 6146 6.314896 AGCAAAGCATGATACTACTTCAAGAC 59.685 38.462 0.00 0.00 0.00 3.01
5678 6431 4.246458 CAGGAAGGACTGTAGCAACTAAC 58.754 47.826 0.00 0.00 33.81 2.34
5699 6467 2.701423 TGTGAAGCTGGTACCTGTAACA 59.299 45.455 18.89 14.45 0.00 2.41
5711 6479 6.981762 AATAATCTGTCTTCTGTGAAGCTG 57.018 37.500 2.71 3.48 0.00 4.24
5762 6834 8.956426 CAATGTTTCTAAGCCCTTCAGTTAATA 58.044 33.333 0.00 0.00 0.00 0.98
5822 6908 1.862806 GAAGAGCGCAACTGACACC 59.137 57.895 11.47 0.00 0.00 4.16
5844 6932 5.381757 AGTAACCACCAGCAAAGTTTATCA 58.618 37.500 0.00 0.00 0.00 2.15
5845 6933 5.959618 AGTAACCACCAGCAAAGTTTATC 57.040 39.130 0.00 0.00 0.00 1.75
5863 6951 6.097554 TGTTTCTTCATTCCCTGCAAAAGTAA 59.902 34.615 0.00 0.00 0.00 2.24
6039 7135 3.013921 GTCCATTTTATCGACCTTGGCA 58.986 45.455 0.00 0.00 0.00 4.92
6105 7201 3.220999 TTCTGTCGCGGGAGGTGTG 62.221 63.158 6.13 0.00 0.00 3.82
6133 7229 2.395367 TTTGTTTGCTACGCGGTGGC 62.395 55.000 12.47 12.20 40.44 5.01
6136 7232 1.650363 GGTTTGTTTGCTACGCGGT 59.350 52.632 12.47 0.00 0.00 5.68
6141 7237 2.699251 CGGAAGGGTTTGTTTGCTAC 57.301 50.000 0.00 0.00 0.00 3.58
6243 7341 4.336993 ACAAGCAGAATAAAACAACCACGA 59.663 37.500 0.00 0.00 0.00 4.35
6337 7436 0.388659 TACTGTTGTTACACCCGCGT 59.611 50.000 4.92 0.00 0.00 6.01
6342 7441 6.427974 GCTTTCTTTCTACTGTTGTTACACC 58.572 40.000 0.00 0.00 0.00 4.16
6378 7477 8.044908 ACGGATAAAACTGTTACAGAACCATAT 58.955 33.333 20.07 9.38 35.18 1.78
6379 7478 7.388437 ACGGATAAAACTGTTACAGAACCATA 58.612 34.615 20.07 5.20 35.18 2.74
6421 7520 0.455815 GCGCCTATGGACCCAAAAAG 59.544 55.000 0.00 0.00 0.00 2.27
6549 7665 3.314635 TCCGAGTAAAGATCGAGTAAGCC 59.685 47.826 0.00 0.00 42.76 4.35
6596 7739 0.390998 GCTTCTGCTCCACTCACCTC 60.391 60.000 0.00 0.00 36.03 3.85
6597 7740 1.123861 TGCTTCTGCTCCACTCACCT 61.124 55.000 0.00 0.00 40.48 4.00
6598 7741 0.250467 TTGCTTCTGCTCCACTCACC 60.250 55.000 0.00 0.00 40.48 4.02
6601 7744 1.471684 CCATTTGCTTCTGCTCCACTC 59.528 52.381 0.00 0.00 40.48 3.51
6642 7786 5.473066 ACAAGCAGCTTCCAAAATACAAT 57.527 34.783 4.07 0.00 0.00 2.71
6907 8061 0.976641 AGGAGAATGAGAACGGCACA 59.023 50.000 0.00 0.00 0.00 4.57
6919 8073 1.736586 CTACTGCGGCGAGGAGAAT 59.263 57.895 12.98 0.00 41.23 2.40
6921 8075 3.518998 GCTACTGCGGCGAGGAGA 61.519 66.667 12.98 0.00 41.23 3.71
6980 8134 3.797546 GAGCAGCAGCAGGTTCGC 61.798 66.667 3.17 0.00 45.49 4.70
6981 8135 1.670406 AAGAGCAGCAGCAGGTTCG 60.670 57.895 3.17 0.00 45.49 3.95
6988 8142 1.206072 CGACAACAAGAGCAGCAGC 59.794 57.895 0.00 0.00 42.56 5.25
6989 8143 0.510359 GACGACAACAAGAGCAGCAG 59.490 55.000 0.00 0.00 0.00 4.24
6992 8146 0.778815 GACGACGACAACAAGAGCAG 59.221 55.000 0.00 0.00 0.00 4.24
6996 8150 1.193644 CAACGACGACGACAACAAGA 58.806 50.000 15.32 0.00 42.66 3.02
6997 8151 1.187271 CTCAACGACGACGACAACAAG 59.813 52.381 15.32 0.00 42.66 3.16
7005 8165 0.523546 CATCCTCCTCAACGACGACG 60.524 60.000 5.58 5.58 45.75 5.12
7334 8521 4.040952 GTCAACCTACTGCCCATATCTGAT 59.959 45.833 0.00 0.00 0.00 2.90
7338 8525 3.467803 GTGTCAACCTACTGCCCATATC 58.532 50.000 0.00 0.00 0.00 1.63
7339 8526 2.172717 GGTGTCAACCTACTGCCCATAT 59.827 50.000 0.00 0.00 43.84 1.78
7340 8527 1.557832 GGTGTCAACCTACTGCCCATA 59.442 52.381 0.00 0.00 43.84 2.74
7341 8528 0.328258 GGTGTCAACCTACTGCCCAT 59.672 55.000 0.00 0.00 43.84 4.00
7342 8529 1.758592 GGTGTCAACCTACTGCCCA 59.241 57.895 0.00 0.00 43.84 5.36
7343 8530 4.716003 GGTGTCAACCTACTGCCC 57.284 61.111 0.00 0.00 43.84 5.36
7367 8560 0.871722 TCACTATGCAACAACCGCAC 59.128 50.000 0.00 0.00 43.35 5.34
7368 8561 1.155889 CTCACTATGCAACAACCGCA 58.844 50.000 0.00 0.00 44.94 5.69
7382 8595 1.602888 ACCAGCGTACGTCCTCACT 60.603 57.895 17.90 0.65 0.00 3.41
7388 8601 4.712425 ACGGCACCAGCGTACGTC 62.712 66.667 17.90 9.31 43.41 4.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.