Multiple sequence alignment - TraesCS4A01G303900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G303900 chr4A 100.000 3479 0 0 1 3479 599610950 599614428 0.000000e+00 6425
1 TraesCS4A01G303900 chr4A 83.053 1369 208 18 1101 2466 24557522 24556175 0.000000e+00 1221
2 TraesCS4A01G303900 chrUn 96.019 1934 60 8 768 2685 241850236 241848304 0.000000e+00 3129
3 TraesCS4A01G303900 chrUn 87.642 704 76 7 1 699 241851713 241851016 0.000000e+00 808
4 TraesCS4A01G303900 chrUn 92.386 394 25 3 2966 3354 241848166 241847773 1.090000e-154 556
5 TraesCS4A01G303900 chr7B 88.136 1298 137 11 1189 2479 711475687 711476974 0.000000e+00 1528
6 TraesCS4A01G303900 chr7B 87.452 1291 153 5 1189 2479 711489344 711488063 0.000000e+00 1478
7 TraesCS4A01G303900 chr7B 85.479 730 97 8 2 724 707963872 707963145 0.000000e+00 752
8 TraesCS4A01G303900 chr7D 88.166 1276 137 8 1189 2460 617197430 617198695 0.000000e+00 1507
9 TraesCS4A01G303900 chr7D 87.773 1284 142 7 1189 2466 617378015 617376741 0.000000e+00 1487
10 TraesCS4A01G303900 chr7A 88.078 1275 140 6 1195 2466 710959156 710957891 0.000000e+00 1502
11 TraesCS4A01G303900 chr7A 87.355 1297 149 11 1189 2479 711172416 711171129 0.000000e+00 1472
12 TraesCS4A01G303900 chr7A 84.750 741 91 11 2 732 634328019 634327291 0.000000e+00 723
13 TraesCS4A01G303900 chr4D 82.822 1368 213 16 1101 2466 443206591 443207938 0.000000e+00 1205
14 TraesCS4A01G303900 chr2D 86.742 709 86 7 2 704 575827850 575827144 0.000000e+00 782
15 TraesCS4A01G303900 chr2D 92.800 125 7 2 3355 3479 148958404 148958526 2.760000e-41 180
16 TraesCS4A01G303900 chr3D 85.155 741 92 12 1 732 614469691 614468960 0.000000e+00 743
17 TraesCS4A01G303900 chr3D 84.869 727 101 7 2 724 123318813 123319534 0.000000e+00 725
18 TraesCS4A01G303900 chr3D 90.152 132 9 3 3348 3479 181801223 181801096 5.970000e-38 169
19 TraesCS4A01G303900 chr3B 85.027 728 102 6 2 724 753268099 753267374 0.000000e+00 734
20 TraesCS4A01G303900 chr3B 84.091 748 103 11 1 740 307223295 307224034 0.000000e+00 708
21 TraesCS4A01G303900 chr3B 94.355 124 7 0 3356 3479 736739612 736739489 1.270000e-44 191
22 TraesCS4A01G303900 chr5D 84.732 727 102 8 3 724 454726594 454725872 0.000000e+00 719
23 TraesCS4A01G303900 chr4B 96.032 126 5 0 3354 3479 520396021 520395896 4.550000e-49 206
24 TraesCS4A01G303900 chr5A 95.200 125 6 0 3355 3479 703467233 703467357 7.620000e-47 198
25 TraesCS4A01G303900 chr2A 95.122 123 6 0 3357 3479 136639080 136638958 9.850000e-46 195
26 TraesCS4A01G303900 chr5B 93.548 124 7 1 3356 3479 657434402 657434524 2.130000e-42 183
27 TraesCS4A01G303900 chr6A 92.063 126 10 0 3354 3479 63107757 63107882 9.920000e-41 178
28 TraesCS4A01G303900 chr1A 92.742 124 8 1 3356 3479 71311366 71311488 9.920000e-41 178


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G303900 chr4A 599610950 599614428 3478 False 6425.000000 6425 100.000000 1 3479 1 chr4A.!!$F1 3478
1 TraesCS4A01G303900 chr4A 24556175 24557522 1347 True 1221.000000 1221 83.053000 1101 2466 1 chr4A.!!$R1 1365
2 TraesCS4A01G303900 chrUn 241847773 241851713 3940 True 1497.666667 3129 92.015667 1 3354 3 chrUn.!!$R1 3353
3 TraesCS4A01G303900 chr7B 711475687 711476974 1287 False 1528.000000 1528 88.136000 1189 2479 1 chr7B.!!$F1 1290
4 TraesCS4A01G303900 chr7B 711488063 711489344 1281 True 1478.000000 1478 87.452000 1189 2479 1 chr7B.!!$R2 1290
5 TraesCS4A01G303900 chr7B 707963145 707963872 727 True 752.000000 752 85.479000 2 724 1 chr7B.!!$R1 722
6 TraesCS4A01G303900 chr7D 617197430 617198695 1265 False 1507.000000 1507 88.166000 1189 2460 1 chr7D.!!$F1 1271
7 TraesCS4A01G303900 chr7D 617376741 617378015 1274 True 1487.000000 1487 87.773000 1189 2466 1 chr7D.!!$R1 1277
8 TraesCS4A01G303900 chr7A 710957891 710959156 1265 True 1502.000000 1502 88.078000 1195 2466 1 chr7A.!!$R2 1271
9 TraesCS4A01G303900 chr7A 711171129 711172416 1287 True 1472.000000 1472 87.355000 1189 2479 1 chr7A.!!$R3 1290
10 TraesCS4A01G303900 chr7A 634327291 634328019 728 True 723.000000 723 84.750000 2 732 1 chr7A.!!$R1 730
11 TraesCS4A01G303900 chr4D 443206591 443207938 1347 False 1205.000000 1205 82.822000 1101 2466 1 chr4D.!!$F1 1365
12 TraesCS4A01G303900 chr2D 575827144 575827850 706 True 782.000000 782 86.742000 2 704 1 chr2D.!!$R1 702
13 TraesCS4A01G303900 chr3D 614468960 614469691 731 True 743.000000 743 85.155000 1 732 1 chr3D.!!$R2 731
14 TraesCS4A01G303900 chr3D 123318813 123319534 721 False 725.000000 725 84.869000 2 724 1 chr3D.!!$F1 722
15 TraesCS4A01G303900 chr3B 753267374 753268099 725 True 734.000000 734 85.027000 2 724 1 chr3B.!!$R2 722
16 TraesCS4A01G303900 chr3B 307223295 307224034 739 False 708.000000 708 84.091000 1 740 1 chr3B.!!$F1 739
17 TraesCS4A01G303900 chr5D 454725872 454726594 722 True 719.000000 719 84.732000 3 724 1 chr5D.!!$R1 721

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
269 274 0.035152 ACATCAGCGGCATCTGGAAA 60.035 50.0 1.45 0.0 34.91 3.13 F
788 1515 1.115467 AGGTTGCTACGCTGCTATCT 58.885 50.0 0.00 0.0 0.00 1.98 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1797 2525 1.006922 GAACAGGCAGTTTGGCAGC 60.007 57.895 5.41 0.0 46.46 5.25 R
2687 3439 0.036388 ACCTAACACGATGGCACCAG 60.036 55.000 0.00 0.0 0.00 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 64 8.551440 TGAATAAAGAATCTTCAGATCCTTCCA 58.449 33.333 0.00 0.00 27.23 3.53
114 116 3.486383 TGGATTTGGAAACCAGTCTGTC 58.514 45.455 0.00 0.00 33.81 3.51
118 120 3.374042 TTGGAAACCAGTCTGTCCAAA 57.626 42.857 17.03 5.37 45.01 3.28
126 128 6.636454 AACCAGTCTGTCCAAATAAGGATA 57.364 37.500 0.00 0.00 40.42 2.59
131 133 5.597182 AGTCTGTCCAAATAAGGATAGCGTA 59.403 40.000 2.30 0.00 44.08 4.42
165 167 0.104120 CTCGTGGTGGACTTGTGTCA 59.896 55.000 0.00 0.00 44.61 3.58
269 274 0.035152 ACATCAGCGGCATCTGGAAA 60.035 50.000 1.45 0.00 34.91 3.13
287 292 3.876914 GGAAAATGATGGATCGTGTGCTA 59.123 43.478 0.00 0.00 0.00 3.49
321 326 3.554934 GTGGATGGCAGGTATGATTTCA 58.445 45.455 0.00 0.00 0.00 2.69
352 358 1.183549 CTTAGTCGTGTAGGGGTGCT 58.816 55.000 0.00 0.00 0.00 4.40
371 377 2.887783 GCTAGATCTGGAGTTCGATGGA 59.112 50.000 10.75 0.00 0.00 3.41
414 420 3.368843 GTCCGATTCGTTCAACGGTAATT 59.631 43.478 10.69 0.00 42.81 1.40
430 439 2.888834 AATTGTTTCGCCTTTGCTGT 57.111 40.000 0.00 0.00 34.43 4.40
537 549 2.519302 GGCTGTTGTGGTGGTGCT 60.519 61.111 0.00 0.00 0.00 4.40
732 1309 9.391006 TCTACACATATTACCATGAGGAAAAAC 57.609 33.333 0.00 0.00 38.69 2.43
743 1323 6.071728 ACCATGAGGAAAAACATGAGAACATC 60.072 38.462 0.00 0.00 44.28 3.06
744 1324 6.071784 CCATGAGGAAAAACATGAGAACATCA 60.072 38.462 0.00 0.82 44.28 3.07
745 1325 6.957920 TGAGGAAAAACATGAGAACATCAA 57.042 33.333 0.00 0.00 42.53 2.57
748 1328 8.084073 TGAGGAAAAACATGAGAACATCAAATC 58.916 33.333 0.00 0.00 42.53 2.17
749 1329 8.186709 AGGAAAAACATGAGAACATCAAATCT 57.813 30.769 0.00 0.00 42.53 2.40
750 1330 9.300681 AGGAAAAACATGAGAACATCAAATCTA 57.699 29.630 0.00 0.00 42.53 1.98
752 1332 9.346725 GAAAAACATGAGAACATCAAATCTACC 57.653 33.333 0.00 0.00 42.53 3.18
753 1333 8.408043 AAAACATGAGAACATCAAATCTACCA 57.592 30.769 0.00 0.00 42.53 3.25
754 1334 8.408043 AAACATGAGAACATCAAATCTACCAA 57.592 30.769 0.00 0.00 42.53 3.67
756 1336 6.600822 ACATGAGAACATCAAATCTACCAAGG 59.399 38.462 0.00 0.00 42.53 3.61
757 1337 4.943705 TGAGAACATCAAATCTACCAAGGC 59.056 41.667 0.00 0.00 34.02 4.35
758 1338 5.184892 AGAACATCAAATCTACCAAGGCT 57.815 39.130 0.00 0.00 0.00 4.58
763 1490 7.573968 ACATCAAATCTACCAAGGCTATTTC 57.426 36.000 0.00 0.00 0.00 2.17
764 1491 6.547510 ACATCAAATCTACCAAGGCTATTTCC 59.452 38.462 0.00 0.00 0.00 3.13
766 1493 3.771577 ATCTACCAAGGCTATTTCCGG 57.228 47.619 0.00 0.00 0.00 5.14
779 1506 2.589798 TTTCCGGATAGGTTGCTACG 57.410 50.000 4.15 0.00 41.99 3.51
788 1515 1.115467 AGGTTGCTACGCTGCTATCT 58.885 50.000 0.00 0.00 0.00 1.98
801 1528 5.536916 ACGCTGCTATCTTCTTACCTCTTAT 59.463 40.000 0.00 0.00 0.00 1.73
826 1554 4.874977 GAGCGCGCTGGGAGGTAC 62.875 72.222 41.82 18.12 0.00 3.34
864 1592 3.686016 CACTTAAGTGGTTGGCTGGTAT 58.314 45.455 25.19 0.00 42.10 2.73
868 1596 3.629142 AAGTGGTTGGCTGGTATCTAC 57.371 47.619 0.00 0.00 0.00 2.59
929 1657 3.002791 ACTGCCGTTGTGATTATCAGTG 58.997 45.455 0.00 0.00 32.77 3.66
932 1660 2.476185 GCCGTTGTGATTATCAGTGCAC 60.476 50.000 9.40 9.40 0.00 4.57
945 1673 4.281525 TCAGTGCACGTTTTTCCTAAAC 57.718 40.909 12.01 0.00 0.00 2.01
946 1674 3.942748 TCAGTGCACGTTTTTCCTAAACT 59.057 39.130 12.01 0.00 0.00 2.66
1069 1797 1.841663 CGTGGACAACTTCCTTGCCG 61.842 60.000 0.00 0.00 46.10 5.69
1080 1808 4.025401 CTTGCCGTTGTCACCGCC 62.025 66.667 0.00 0.00 0.00 6.13
1182 1910 2.970974 GCCAGCGCACCTGTTCTTC 61.971 63.158 11.47 0.00 40.06 2.87
1818 2546 2.193536 GCCAAACTGCCTGTTCCGT 61.194 57.895 0.00 0.00 38.03 4.69
1884 2612 1.298859 GATTCCGCCTCAAGCACGTT 61.299 55.000 0.00 0.00 44.04 3.99
1981 2712 2.290577 GGGATCAACCTCAGCAAGAACT 60.291 50.000 0.00 0.00 38.98 3.01
2070 2801 2.891882 GAGCAGCTCCTCTTCGCT 59.108 61.111 11.84 0.00 36.83 4.93
2403 3140 0.618680 AGTGCATAGACCCTCCTGCA 60.619 55.000 0.00 0.00 41.98 4.41
2408 3145 1.680522 ATAGACCCTCCTGCACGCAG 61.681 60.000 12.17 12.17 43.26 5.18
2488 3225 3.495193 CGAAACAACTAGTACGCAGCTA 58.505 45.455 0.00 0.00 0.00 3.32
2507 3244 7.307989 CGCAGCTAGCCTACAAAATACATTATT 60.308 37.037 12.13 0.00 41.38 1.40
2562 3302 1.320344 CGGGGGAGATGTCGTGAGAA 61.320 60.000 0.00 0.00 45.01 2.87
2574 3314 0.179156 CGTGAGAATGCACATTGGGC 60.179 55.000 3.27 3.27 38.69 5.36
2589 3329 4.592778 ACATTGGGCAATTAAGGTCTGTTT 59.407 37.500 0.00 0.00 0.00 2.83
2613 3354 8.554835 TTATTGAGTTTGTAACCGAATCATCA 57.445 30.769 0.00 0.00 0.00 3.07
2634 3379 7.617329 TCATCAATCTATAAGATGGTCTCCGAT 59.383 37.037 0.00 0.00 39.59 4.18
2661 3410 2.586425 CCATTCTTGGGTTGTGTGAGT 58.414 47.619 0.00 0.00 39.56 3.41
2662 3411 2.554032 CCATTCTTGGGTTGTGTGAGTC 59.446 50.000 0.00 0.00 39.56 3.36
2663 3412 1.948104 TTCTTGGGTTGTGTGAGTCG 58.052 50.000 0.00 0.00 0.00 4.18
2685 3437 5.357878 TCGTTGTAAACCGGTGAGATATACT 59.642 40.000 8.52 0.00 46.28 2.12
2686 3438 5.684626 CGTTGTAAACCGGTGAGATATACTC 59.315 44.000 8.52 0.00 46.28 2.59
2687 3439 5.779529 TGTAAACCGGTGAGATATACTCC 57.220 43.478 8.52 0.00 44.34 3.85
2688 3440 5.452255 TGTAAACCGGTGAGATATACTCCT 58.548 41.667 8.52 0.00 44.34 3.69
2689 3441 4.939052 AAACCGGTGAGATATACTCCTG 57.061 45.455 8.52 0.00 44.34 3.86
2691 3443 2.177233 ACCGGTGAGATATACTCCTGGT 59.823 50.000 6.12 0.00 43.75 4.00
2692 3444 2.558795 CCGGTGAGATATACTCCTGGTG 59.441 54.545 0.00 0.00 44.34 4.17
2693 3445 2.029828 CGGTGAGATATACTCCTGGTGC 60.030 54.545 0.00 0.00 44.34 5.01
2695 3447 2.965831 GTGAGATATACTCCTGGTGCCA 59.034 50.000 0.00 0.00 44.34 4.92
2696 3448 3.580458 GTGAGATATACTCCTGGTGCCAT 59.420 47.826 0.00 0.00 44.34 4.40
2697 3449 3.834813 TGAGATATACTCCTGGTGCCATC 59.165 47.826 0.00 0.00 44.34 3.51
2698 3450 2.828520 AGATATACTCCTGGTGCCATCG 59.171 50.000 0.00 0.00 0.00 3.84
2699 3451 2.082140 TATACTCCTGGTGCCATCGT 57.918 50.000 0.00 0.00 0.00 3.73
2700 3452 0.465705 ATACTCCTGGTGCCATCGTG 59.534 55.000 0.00 0.00 0.00 4.35
2701 3453 0.902984 TACTCCTGGTGCCATCGTGT 60.903 55.000 0.00 0.00 0.00 4.49
2702 3454 1.003355 CTCCTGGTGCCATCGTGTT 60.003 57.895 0.00 0.00 0.00 3.32
2703 3455 0.249120 CTCCTGGTGCCATCGTGTTA 59.751 55.000 0.00 0.00 0.00 2.41
2704 3456 0.249120 TCCTGGTGCCATCGTGTTAG 59.751 55.000 0.00 0.00 0.00 2.34
2705 3457 0.744414 CCTGGTGCCATCGTGTTAGG 60.744 60.000 0.00 0.00 0.00 2.69
2706 3458 0.036388 CTGGTGCCATCGTGTTAGGT 60.036 55.000 0.00 0.00 0.00 3.08
2707 3459 0.398696 TGGTGCCATCGTGTTAGGTT 59.601 50.000 0.00 0.00 0.00 3.50
2708 3460 1.202830 TGGTGCCATCGTGTTAGGTTT 60.203 47.619 0.00 0.00 0.00 3.27
2709 3461 1.199097 GGTGCCATCGTGTTAGGTTTG 59.801 52.381 0.00 0.00 0.00 2.93
2710 3462 1.199097 GTGCCATCGTGTTAGGTTTGG 59.801 52.381 0.00 0.00 0.00 3.28
2711 3463 1.072489 TGCCATCGTGTTAGGTTTGGA 59.928 47.619 0.00 0.00 0.00 3.53
2712 3464 1.467342 GCCATCGTGTTAGGTTTGGAC 59.533 52.381 0.00 0.00 0.00 4.02
2713 3465 2.874457 GCCATCGTGTTAGGTTTGGACT 60.874 50.000 0.00 0.00 0.00 3.85
2714 3466 3.000727 CCATCGTGTTAGGTTTGGACTC 58.999 50.000 0.00 0.00 0.00 3.36
2715 3467 3.556213 CCATCGTGTTAGGTTTGGACTCA 60.556 47.826 0.00 0.00 0.00 3.41
2716 3468 4.253685 CATCGTGTTAGGTTTGGACTCAT 58.746 43.478 0.00 0.00 0.00 2.90
2717 3469 5.416083 CATCGTGTTAGGTTTGGACTCATA 58.584 41.667 0.00 0.00 0.00 2.15
2718 3470 5.471556 TCGTGTTAGGTTTGGACTCATAA 57.528 39.130 0.00 0.00 0.00 1.90
2719 3471 5.232463 TCGTGTTAGGTTTGGACTCATAAC 58.768 41.667 0.00 0.00 0.00 1.89
2720 3472 4.992319 CGTGTTAGGTTTGGACTCATAACA 59.008 41.667 0.00 0.00 32.29 2.41
2721 3473 5.642063 CGTGTTAGGTTTGGACTCATAACAT 59.358 40.000 5.89 0.00 34.70 2.71
2722 3474 6.402118 CGTGTTAGGTTTGGACTCATAACATG 60.402 42.308 5.89 6.61 34.70 3.21
2723 3475 6.430000 GTGTTAGGTTTGGACTCATAACATGT 59.570 38.462 0.00 0.00 34.70 3.21
2724 3476 7.001674 TGTTAGGTTTGGACTCATAACATGTT 58.998 34.615 16.68 16.68 31.08 2.71
2725 3477 5.964958 AGGTTTGGACTCATAACATGTTG 57.035 39.130 21.42 6.25 0.00 3.33
2726 3478 4.766891 AGGTTTGGACTCATAACATGTTGG 59.233 41.667 21.42 12.88 0.00 3.77
2727 3479 4.082245 GGTTTGGACTCATAACATGTTGGG 60.082 45.833 21.42 8.65 0.00 4.12
2728 3480 4.380843 TTGGACTCATAACATGTTGGGT 57.619 40.909 21.42 12.17 0.00 4.51
2729 3481 5.506730 TTGGACTCATAACATGTTGGGTA 57.493 39.130 21.42 0.80 0.00 3.69
2730 3482 4.839121 TGGACTCATAACATGTTGGGTAC 58.161 43.478 21.42 13.28 0.00 3.34
2751 3503 6.378848 GGTACCCCTATACAAAAAGCAATGAA 59.621 38.462 0.00 0.00 0.00 2.57
2759 3511 4.450976 ACAAAAAGCAATGAAGAAACCCC 58.549 39.130 0.00 0.00 0.00 4.95
2760 3512 3.769739 AAAAGCAATGAAGAAACCCCC 57.230 42.857 0.00 0.00 0.00 5.40
2764 3516 1.273327 GCAATGAAGAAACCCCCAGTG 59.727 52.381 0.00 0.00 0.00 3.66
2774 3526 1.762708 ACCCCCAGTGATTAATTGCG 58.237 50.000 0.00 0.00 0.00 4.85
2789 3541 0.249238 TTGCGGCGTCAAAATTGCTT 60.249 45.000 9.37 0.00 0.00 3.91
2790 3542 0.249238 TGCGGCGTCAAAATTGCTTT 60.249 45.000 9.37 0.00 0.00 3.51
2791 3543 0.858583 GCGGCGTCAAAATTGCTTTT 59.141 45.000 9.37 0.00 34.90 2.27
2792 3544 1.136639 GCGGCGTCAAAATTGCTTTTC 60.137 47.619 9.37 0.00 32.21 2.29
2793 3545 1.455408 CGGCGTCAAAATTGCTTTTCC 59.545 47.619 0.00 0.00 32.21 3.13
2794 3546 2.478831 GGCGTCAAAATTGCTTTTCCA 58.521 42.857 0.00 0.00 32.21 3.53
2795 3547 3.066380 GGCGTCAAAATTGCTTTTCCAT 58.934 40.909 0.00 0.00 32.21 3.41
2796 3548 3.120580 GGCGTCAAAATTGCTTTTCCATG 60.121 43.478 0.00 0.00 32.21 3.66
2797 3549 3.120580 GCGTCAAAATTGCTTTTCCATGG 60.121 43.478 4.97 4.97 32.21 3.66
2798 3550 4.057432 CGTCAAAATTGCTTTTCCATGGT 58.943 39.130 12.58 0.00 32.21 3.55
2799 3551 4.084433 CGTCAAAATTGCTTTTCCATGGTG 60.084 41.667 12.58 0.00 32.21 4.17
2800 3552 4.815846 GTCAAAATTGCTTTTCCATGGTGT 59.184 37.500 12.58 0.00 32.21 4.16
2801 3553 5.296531 GTCAAAATTGCTTTTCCATGGTGTT 59.703 36.000 12.58 0.00 32.21 3.32
2802 3554 5.526846 TCAAAATTGCTTTTCCATGGTGTTC 59.473 36.000 12.58 0.00 32.21 3.18
2803 3555 4.961438 AATTGCTTTTCCATGGTGTTCT 57.039 36.364 12.58 0.00 0.00 3.01
2804 3556 6.418057 AAATTGCTTTTCCATGGTGTTCTA 57.582 33.333 12.58 0.00 0.00 2.10
2805 3557 5.649782 ATTGCTTTTCCATGGTGTTCTAG 57.350 39.130 12.58 3.48 0.00 2.43
2806 3558 3.420893 TGCTTTTCCATGGTGTTCTAGG 58.579 45.455 12.58 0.00 0.00 3.02
2807 3559 2.755103 GCTTTTCCATGGTGTTCTAGGG 59.245 50.000 12.58 0.00 0.00 3.53
2808 3560 3.814316 GCTTTTCCATGGTGTTCTAGGGT 60.814 47.826 12.58 0.00 0.00 4.34
2809 3561 3.713826 TTTCCATGGTGTTCTAGGGTC 57.286 47.619 12.58 0.00 0.00 4.46
2810 3562 2.335681 TCCATGGTGTTCTAGGGTCA 57.664 50.000 12.58 0.00 0.00 4.02
2811 3563 2.187958 TCCATGGTGTTCTAGGGTCAG 58.812 52.381 12.58 0.00 0.00 3.51
2812 3564 1.407437 CCATGGTGTTCTAGGGTCAGC 60.407 57.143 2.57 0.00 0.00 4.26
2813 3565 1.556911 CATGGTGTTCTAGGGTCAGCT 59.443 52.381 11.03 0.00 0.00 4.24
2814 3566 1.729586 TGGTGTTCTAGGGTCAGCTT 58.270 50.000 11.03 0.00 0.00 3.74
2815 3567 1.347707 TGGTGTTCTAGGGTCAGCTTG 59.652 52.381 11.03 0.00 0.00 4.01
2816 3568 1.348036 GGTGTTCTAGGGTCAGCTTGT 59.652 52.381 0.00 0.00 0.00 3.16
2817 3569 2.417719 GTGTTCTAGGGTCAGCTTGTG 58.582 52.381 0.00 0.00 0.00 3.33
2818 3570 1.347707 TGTTCTAGGGTCAGCTTGTGG 59.652 52.381 0.00 0.00 0.00 4.17
2819 3571 1.348036 GTTCTAGGGTCAGCTTGTGGT 59.652 52.381 0.00 0.00 0.00 4.16
2820 3572 0.976641 TCTAGGGTCAGCTTGTGGTG 59.023 55.000 0.00 0.00 42.54 4.17
2821 3573 0.976641 CTAGGGTCAGCTTGTGGTGA 59.023 55.000 0.00 0.00 46.85 4.02
2825 3577 4.481195 TCAGCTTGTGGTGAAGGC 57.519 55.556 0.00 0.00 46.17 4.35
2826 3578 1.531259 TCAGCTTGTGGTGAAGGCA 59.469 52.632 0.00 0.00 46.17 4.75
2827 3579 0.106769 TCAGCTTGTGGTGAAGGCAA 60.107 50.000 0.00 0.00 46.17 4.52
2828 3580 0.746063 CAGCTTGTGGTGAAGGCAAA 59.254 50.000 0.00 0.00 43.76 3.68
2829 3581 0.746659 AGCTTGTGGTGAAGGCAAAC 59.253 50.000 0.00 0.00 0.00 2.93
2830 3582 0.594796 GCTTGTGGTGAAGGCAAACG 60.595 55.000 0.00 0.00 0.00 3.60
2831 3583 0.738389 CTTGTGGTGAAGGCAAACGT 59.262 50.000 0.00 0.00 0.00 3.99
2832 3584 1.944024 CTTGTGGTGAAGGCAAACGTA 59.056 47.619 0.00 0.00 0.00 3.57
2833 3585 1.588674 TGTGGTGAAGGCAAACGTAG 58.411 50.000 0.00 0.00 0.00 3.51
2834 3586 1.139256 TGTGGTGAAGGCAAACGTAGA 59.861 47.619 0.00 0.00 0.00 2.59
2835 3587 2.215196 GTGGTGAAGGCAAACGTAGAA 58.785 47.619 0.00 0.00 0.00 2.10
2836 3588 2.032290 GTGGTGAAGGCAAACGTAGAAC 60.032 50.000 0.00 0.00 0.00 3.01
2837 3589 2.215196 GGTGAAGGCAAACGTAGAACA 58.785 47.619 0.00 0.00 0.00 3.18
2838 3590 2.614983 GGTGAAGGCAAACGTAGAACAA 59.385 45.455 0.00 0.00 0.00 2.83
2839 3591 3.065648 GGTGAAGGCAAACGTAGAACAAA 59.934 43.478 0.00 0.00 0.00 2.83
2840 3592 4.279659 GTGAAGGCAAACGTAGAACAAAG 58.720 43.478 0.00 0.00 0.00 2.77
2841 3593 3.314080 TGAAGGCAAACGTAGAACAAAGG 59.686 43.478 0.00 0.00 0.00 3.11
2842 3594 2.927028 AGGCAAACGTAGAACAAAGGT 58.073 42.857 0.00 0.00 0.00 3.50
2843 3595 2.616842 AGGCAAACGTAGAACAAAGGTG 59.383 45.455 0.00 0.00 0.00 4.00
2844 3596 2.287368 GGCAAACGTAGAACAAAGGTGG 60.287 50.000 0.00 0.00 0.00 4.61
2845 3597 2.857104 GCAAACGTAGAACAAAGGTGGC 60.857 50.000 0.00 0.00 0.00 5.01
2846 3598 2.335316 AACGTAGAACAAAGGTGGCA 57.665 45.000 0.00 0.00 0.00 4.92
2847 3599 1.589803 ACGTAGAACAAAGGTGGCAC 58.410 50.000 9.70 9.70 0.00 5.01
2865 3617 0.977395 ACTCACTAGCACAAGGGTCC 59.023 55.000 0.00 0.00 0.00 4.46
2874 3626 2.348998 CAAGGGTCCTCTTGCGCT 59.651 61.111 9.73 0.00 37.84 5.92
2876 3628 3.302347 AAGGGTCCTCTTGCGCTCG 62.302 63.158 9.73 0.00 0.00 5.03
2904 3656 0.247736 ACTCCGCAGAGACCAATGAC 59.752 55.000 3.36 0.00 43.39 3.06
2918 3670 1.315257 AATGACAAGATGCGGCACCC 61.315 55.000 4.03 0.00 0.00 4.61
2919 3671 2.045926 GACAAGATGCGGCACCCT 60.046 61.111 4.03 2.42 0.00 4.34
2920 3672 1.220749 GACAAGATGCGGCACCCTA 59.779 57.895 4.03 0.00 0.00 3.53
2922 3674 1.221840 CAAGATGCGGCACCCTACT 59.778 57.895 4.03 0.00 0.00 2.57
2923 3675 0.464036 CAAGATGCGGCACCCTACTA 59.536 55.000 4.03 0.00 0.00 1.82
2924 3676 0.464452 AAGATGCGGCACCCTACTAC 59.536 55.000 4.03 0.00 0.00 2.73
2926 3678 1.682451 GATGCGGCACCCTACTACCA 61.682 60.000 4.03 0.00 0.00 3.25
2928 3680 1.297364 GCGGCACCCTACTACCAAA 59.703 57.895 0.00 0.00 0.00 3.28
2932 3684 2.811136 CGGCACCCTACTACCAAACAAA 60.811 50.000 0.00 0.00 0.00 2.83
2933 3685 2.555325 GGCACCCTACTACCAAACAAAC 59.445 50.000 0.00 0.00 0.00 2.93
2935 3687 3.824443 GCACCCTACTACCAAACAAACAT 59.176 43.478 0.00 0.00 0.00 2.71
2936 3688 4.320935 GCACCCTACTACCAAACAAACATG 60.321 45.833 0.00 0.00 0.00 3.21
2937 3689 4.825085 CACCCTACTACCAAACAAACATGT 59.175 41.667 0.00 0.00 0.00 3.21
2938 3690 5.998981 CACCCTACTACCAAACAAACATGTA 59.001 40.000 0.00 0.00 0.00 2.29
2939 3691 5.999600 ACCCTACTACCAAACAAACATGTAC 59.000 40.000 0.00 0.00 0.00 2.90
2940 3692 5.998981 CCCTACTACCAAACAAACATGTACA 59.001 40.000 0.00 0.00 0.00 2.90
2941 3693 6.148811 CCCTACTACCAAACAAACATGTACAG 59.851 42.308 0.00 0.00 0.00 2.74
2942 3694 6.148811 CCTACTACCAAACAAACATGTACAGG 59.851 42.308 5.87 5.87 0.00 4.00
2943 3695 5.442391 ACTACCAAACAAACATGTACAGGT 58.558 37.500 7.48 7.48 0.00 4.00
2944 3696 6.593807 ACTACCAAACAAACATGTACAGGTA 58.406 36.000 14.38 8.88 0.00 3.08
2945 3697 5.761165 ACCAAACAAACATGTACAGGTAC 57.239 39.130 14.38 2.66 36.63 3.34
2946 3698 4.581409 ACCAAACAAACATGTACAGGTACC 59.419 41.667 14.38 2.73 35.26 3.34
2947 3699 4.319911 CCAAACAAACATGTACAGGTACCG 60.320 45.833 14.38 7.86 35.26 4.02
2948 3700 3.756933 ACAAACATGTACAGGTACCGT 57.243 42.857 14.38 8.49 35.26 4.83
2949 3701 4.870123 ACAAACATGTACAGGTACCGTA 57.130 40.909 14.38 9.22 35.26 4.02
2950 3702 4.559153 ACAAACATGTACAGGTACCGTAC 58.441 43.478 26.55 26.55 39.75 3.67
2951 3703 4.281688 ACAAACATGTACAGGTACCGTACT 59.718 41.667 29.85 20.09 39.96 2.73
2952 3704 4.445452 AACATGTACAGGTACCGTACTG 57.555 45.455 29.85 26.67 39.96 2.74
2954 3706 3.828451 ACATGTACAGGTACCGTACTGTT 59.172 43.478 29.85 19.64 45.03 3.16
2955 3707 5.009631 ACATGTACAGGTACCGTACTGTTA 58.990 41.667 29.85 19.12 45.03 2.41
2956 3708 5.653769 ACATGTACAGGTACCGTACTGTTAT 59.346 40.000 29.85 19.99 45.03 1.89
2957 3709 5.565592 TGTACAGGTACCGTACTGTTATG 57.434 43.478 29.85 15.68 45.03 1.90
2958 3710 5.252547 TGTACAGGTACCGTACTGTTATGA 58.747 41.667 29.85 16.22 45.03 2.15
2959 3711 4.708726 ACAGGTACCGTACTGTTATGAC 57.291 45.455 6.18 0.00 45.03 3.06
2960 3712 3.127548 ACAGGTACCGTACTGTTATGACG 59.872 47.826 6.18 0.00 45.03 4.35
2961 3713 2.098117 AGGTACCGTACTGTTATGACGC 59.902 50.000 6.18 0.00 35.28 5.19
2962 3714 2.159393 GGTACCGTACTGTTATGACGCA 60.159 50.000 8.57 0.00 35.28 5.24
2963 3715 1.986698 ACCGTACTGTTATGACGCAC 58.013 50.000 0.00 0.00 35.28 5.34
2964 3716 1.274596 CCGTACTGTTATGACGCACC 58.725 55.000 0.00 0.00 35.28 5.01
2970 3722 5.916320 CGTACTGTTATGACGCACCAATATA 59.084 40.000 0.00 0.00 0.00 0.86
2999 3751 3.822192 CGGAGATGGCGTCGACCA 61.822 66.667 10.58 3.15 45.82 4.02
3007 3759 3.771160 GCGTCGACCATGGGGACT 61.771 66.667 26.18 4.63 38.05 3.85
3024 3776 3.334691 GGACTTCACAACATCCGATCAA 58.665 45.455 0.00 0.00 0.00 2.57
3025 3777 3.751175 GGACTTCACAACATCCGATCAAA 59.249 43.478 0.00 0.00 0.00 2.69
3027 3779 5.584649 GGACTTCACAACATCCGATCAAATA 59.415 40.000 0.00 0.00 0.00 1.40
3031 3783 8.204160 ACTTCACAACATCCGATCAAATATAGA 58.796 33.333 0.00 0.00 0.00 1.98
3036 3788 9.376075 ACAACATCCGATCAAATATAGATCATC 57.624 33.333 14.79 0.00 41.49 2.92
3037 3789 8.538039 CAACATCCGATCAAATATAGATCATCG 58.462 37.037 14.79 0.00 41.49 3.84
3056 3809 3.186047 GTTCACGTCCATCCGGCG 61.186 66.667 0.00 0.00 37.68 6.46
3103 3856 3.222603 CCAAGGTTATTATGACAGGCCC 58.777 50.000 0.00 0.00 0.00 5.80
3139 3896 2.393646 GAGTCCTCTAGCTTGGTGGAT 58.606 52.381 12.01 4.49 0.00 3.41
3142 3899 1.757118 TCCTCTAGCTTGGTGGATTCG 59.243 52.381 0.00 0.00 0.00 3.34
3151 3908 3.707793 CTTGGTGGATTCGAGCTACTAC 58.292 50.000 0.00 0.00 0.00 2.73
3180 3937 5.355350 CAGGTTACAATTCAGATGGAACTCC 59.645 44.000 2.03 0.00 40.70 3.85
3221 3978 5.461078 TGTGCAAGTTTCTTTACGTACTCTC 59.539 40.000 0.00 0.00 0.00 3.20
3261 4018 4.467769 AGTTACTAAGCCGGCTATCACTA 58.532 43.478 33.07 17.31 0.00 2.74
3298 4055 2.154462 AGTTCCGTCAATTCCTGCAAG 58.846 47.619 0.00 0.00 0.00 4.01
3319 4076 5.700402 AGCAAGAGGGCTTTTCTAGATAA 57.300 39.130 0.00 0.00 42.71 1.75
3320 4077 6.259346 AGCAAGAGGGCTTTTCTAGATAAT 57.741 37.500 0.00 0.00 42.71 1.28
3325 4082 5.430089 AGAGGGCTTTTCTAGATAATGGTGT 59.570 40.000 0.00 0.00 0.00 4.16
3327 4084 4.036852 GGGCTTTTCTAGATAATGGTGTGC 59.963 45.833 0.00 0.00 0.00 4.57
3332 4089 7.413657 GCTTTTCTAGATAATGGTGTGCGTAAA 60.414 37.037 0.00 0.00 0.00 2.01
3382 4139 7.903995 TTTTTGAGACAATCAGCAAAACTTT 57.096 28.000 0.00 0.00 39.20 2.66
3383 4140 8.994429 TTTTTGAGACAATCAGCAAAACTTTA 57.006 26.923 0.00 0.00 39.20 1.85
3384 4141 9.598517 TTTTTGAGACAATCAGCAAAACTTTAT 57.401 25.926 0.00 0.00 39.20 1.40
3385 4142 9.598517 TTTTGAGACAATCAGCAAAACTTTATT 57.401 25.926 0.00 0.00 39.68 1.40
3386 4143 8.578308 TTGAGACAATCAGCAAAACTTTATTG 57.422 30.769 0.00 0.00 39.68 1.90
3387 4144 7.939782 TGAGACAATCAGCAAAACTTTATTGA 58.060 30.769 0.00 0.00 34.71 2.57
3388 4145 7.862372 TGAGACAATCAGCAAAACTTTATTGAC 59.138 33.333 0.00 0.00 34.71 3.18
3389 4146 7.147976 AGACAATCAGCAAAACTTTATTGACC 58.852 34.615 0.00 0.00 34.71 4.02
3390 4147 6.223120 ACAATCAGCAAAACTTTATTGACCC 58.777 36.000 0.00 0.00 34.71 4.46
3391 4148 4.497473 TCAGCAAAACTTTATTGACCCG 57.503 40.909 0.00 0.00 0.00 5.28
3392 4149 3.886505 TCAGCAAAACTTTATTGACCCGT 59.113 39.130 0.00 0.00 0.00 5.28
3393 4150 4.023536 TCAGCAAAACTTTATTGACCCGTC 60.024 41.667 0.00 0.00 0.00 4.79
3394 4151 3.886505 AGCAAAACTTTATTGACCCGTCA 59.113 39.130 0.00 0.00 37.91 4.35
3395 4152 3.978855 GCAAAACTTTATTGACCCGTCAC 59.021 43.478 0.00 0.00 39.66 3.67
3396 4153 4.498345 GCAAAACTTTATTGACCCGTCACA 60.498 41.667 0.00 0.00 39.66 3.58
3397 4154 4.823790 AAACTTTATTGACCCGTCACAC 57.176 40.909 0.00 0.00 39.66 3.82
3398 4155 3.478857 ACTTTATTGACCCGTCACACA 57.521 42.857 0.00 0.00 39.66 3.72
3399 4156 3.399330 ACTTTATTGACCCGTCACACAG 58.601 45.455 0.00 0.00 39.66 3.66
3400 4157 3.181458 ACTTTATTGACCCGTCACACAGT 60.181 43.478 0.00 0.00 39.66 3.55
3401 4158 3.478857 TTATTGACCCGTCACACAGTT 57.521 42.857 0.00 0.00 39.66 3.16
3402 4159 2.341846 ATTGACCCGTCACACAGTTT 57.658 45.000 0.00 0.00 39.66 2.66
3403 4160 2.983907 TTGACCCGTCACACAGTTTA 57.016 45.000 0.00 0.00 39.66 2.01
3404 4161 2.228138 TGACCCGTCACACAGTTTAC 57.772 50.000 0.00 0.00 34.14 2.01
3405 4162 1.481363 TGACCCGTCACACAGTTTACA 59.519 47.619 0.00 0.00 34.14 2.41
3406 4163 2.103432 TGACCCGTCACACAGTTTACAT 59.897 45.455 0.00 0.00 34.14 2.29
3407 4164 2.478894 GACCCGTCACACAGTTTACATG 59.521 50.000 0.00 0.00 0.00 3.21
3408 4165 1.804151 CCCGTCACACAGTTTACATGG 59.196 52.381 0.00 0.00 0.00 3.66
3409 4166 2.549134 CCCGTCACACAGTTTACATGGA 60.549 50.000 0.00 0.00 0.00 3.41
3410 4167 2.478894 CCGTCACACAGTTTACATGGAC 59.521 50.000 0.00 0.00 0.00 4.02
3411 4168 2.154963 CGTCACACAGTTTACATGGACG 59.845 50.000 0.00 0.00 40.45 4.79
3412 4169 3.386486 GTCACACAGTTTACATGGACGA 58.614 45.455 0.00 0.00 0.00 4.20
3413 4170 3.805422 GTCACACAGTTTACATGGACGAA 59.195 43.478 0.00 0.00 0.00 3.85
3414 4171 4.271533 GTCACACAGTTTACATGGACGAAA 59.728 41.667 0.00 0.00 0.00 3.46
3415 4172 5.049680 GTCACACAGTTTACATGGACGAAAT 60.050 40.000 0.00 0.00 0.00 2.17
3416 4173 5.049749 TCACACAGTTTACATGGACGAAATG 60.050 40.000 0.00 0.00 0.00 2.32
3417 4174 5.049749 CACACAGTTTACATGGACGAAATGA 60.050 40.000 0.00 0.00 0.00 2.57
3418 4175 5.529430 ACACAGTTTACATGGACGAAATGAA 59.471 36.000 0.00 0.00 0.00 2.57
3419 4176 6.079763 CACAGTTTACATGGACGAAATGAAG 58.920 40.000 0.00 0.00 0.00 3.02
3420 4177 5.995282 ACAGTTTACATGGACGAAATGAAGA 59.005 36.000 0.00 0.00 0.00 2.87
3421 4178 6.655003 ACAGTTTACATGGACGAAATGAAGAT 59.345 34.615 0.00 0.00 0.00 2.40
3422 4179 7.148407 ACAGTTTACATGGACGAAATGAAGATC 60.148 37.037 0.00 0.00 0.00 2.75
3423 4180 7.065085 CAGTTTACATGGACGAAATGAAGATCT 59.935 37.037 0.00 0.00 0.00 2.75
3424 4181 7.278868 AGTTTACATGGACGAAATGAAGATCTC 59.721 37.037 0.00 0.00 0.00 2.75
3425 4182 4.446371 ACATGGACGAAATGAAGATCTCC 58.554 43.478 0.00 0.00 0.00 3.71
3426 4183 3.165058 TGGACGAAATGAAGATCTCCG 57.835 47.619 0.00 0.00 0.00 4.63
3427 4184 2.159099 TGGACGAAATGAAGATCTCCGG 60.159 50.000 0.00 0.00 0.00 5.14
3428 4185 2.474816 GACGAAATGAAGATCTCCGGG 58.525 52.381 0.00 0.00 0.00 5.73
3429 4186 1.139058 ACGAAATGAAGATCTCCGGGG 59.861 52.381 0.00 0.00 0.00 5.73
3430 4187 1.139058 CGAAATGAAGATCTCCGGGGT 59.861 52.381 0.00 0.00 0.00 4.95
3431 4188 2.565841 GAAATGAAGATCTCCGGGGTG 58.434 52.381 0.00 0.00 0.00 4.61
3432 4189 0.839946 AATGAAGATCTCCGGGGTGG 59.160 55.000 0.00 0.00 40.09 4.61
3433 4190 1.700042 ATGAAGATCTCCGGGGTGGC 61.700 60.000 0.00 0.00 37.80 5.01
3434 4191 3.090532 AAGATCTCCGGGGTGGCC 61.091 66.667 0.00 0.00 37.80 5.36
3449 4206 1.288752 GGCCCAACCAAACATGACG 59.711 57.895 0.00 0.00 38.86 4.35
3450 4207 1.175983 GGCCCAACCAAACATGACGA 61.176 55.000 0.00 0.00 38.86 4.20
3451 4208 0.039527 GCCCAACCAAACATGACGAC 60.040 55.000 0.00 0.00 0.00 4.34
3452 4209 0.596082 CCCAACCAAACATGACGACC 59.404 55.000 0.00 0.00 0.00 4.79
3453 4210 1.313772 CCAACCAAACATGACGACCA 58.686 50.000 0.00 0.00 0.00 4.02
3454 4211 1.678627 CCAACCAAACATGACGACCAA 59.321 47.619 0.00 0.00 0.00 3.67
3455 4212 2.287547 CCAACCAAACATGACGACCAAG 60.288 50.000 0.00 0.00 0.00 3.61
3456 4213 0.951558 ACCAAACATGACGACCAAGC 59.048 50.000 0.00 0.00 0.00 4.01
3457 4214 0.240945 CCAAACATGACGACCAAGCC 59.759 55.000 0.00 0.00 0.00 4.35
3458 4215 0.240945 CAAACATGACGACCAAGCCC 59.759 55.000 0.00 0.00 0.00 5.19
3459 4216 0.893727 AAACATGACGACCAAGCCCC 60.894 55.000 0.00 0.00 0.00 5.80
3460 4217 2.063015 AACATGACGACCAAGCCCCA 62.063 55.000 0.00 0.00 0.00 4.96
3461 4218 1.746615 CATGACGACCAAGCCCCAG 60.747 63.158 0.00 0.00 0.00 4.45
3462 4219 2.224159 ATGACGACCAAGCCCCAGT 61.224 57.895 0.00 0.00 0.00 4.00
3463 4220 1.779061 ATGACGACCAAGCCCCAGTT 61.779 55.000 0.00 0.00 0.00 3.16
3464 4221 1.228154 GACGACCAAGCCCCAGTTT 60.228 57.895 0.00 0.00 0.00 2.66
3465 4222 0.035739 GACGACCAAGCCCCAGTTTA 59.964 55.000 0.00 0.00 0.00 2.01
3466 4223 0.475044 ACGACCAAGCCCCAGTTTAA 59.525 50.000 0.00 0.00 0.00 1.52
3467 4224 1.165270 CGACCAAGCCCCAGTTTAAG 58.835 55.000 0.00 0.00 0.00 1.85
3468 4225 1.544759 CGACCAAGCCCCAGTTTAAGT 60.545 52.381 0.00 0.00 0.00 2.24
3469 4226 1.886542 GACCAAGCCCCAGTTTAAGTG 59.113 52.381 0.00 0.00 0.00 3.16
3470 4227 0.603065 CCAAGCCCCAGTTTAAGTGC 59.397 55.000 0.00 0.00 0.00 4.40
3471 4228 1.327303 CAAGCCCCAGTTTAAGTGCA 58.673 50.000 0.00 0.00 0.00 4.57
3472 4229 1.895131 CAAGCCCCAGTTTAAGTGCAT 59.105 47.619 0.00 0.00 0.00 3.96
3473 4230 1.549203 AGCCCCAGTTTAAGTGCATG 58.451 50.000 0.00 0.00 0.00 4.06
3474 4231 0.108662 GCCCCAGTTTAAGTGCATGC 60.109 55.000 11.82 11.82 0.00 4.06
3475 4232 1.549203 CCCCAGTTTAAGTGCATGCT 58.451 50.000 20.33 0.40 0.00 3.79
3476 4233 1.895131 CCCCAGTTTAAGTGCATGCTT 59.105 47.619 20.33 8.40 0.00 3.91
3477 4234 2.299867 CCCCAGTTTAAGTGCATGCTTT 59.700 45.455 20.33 15.29 0.00 3.51
3478 4235 3.319755 CCCAGTTTAAGTGCATGCTTTG 58.680 45.455 20.33 0.96 0.00 2.77
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 0.233332 CTTTATTCAGCGCCGCTAGC 59.767 55.000 13.03 4.06 36.40 3.42
26 27 1.852942 TCTTTATTCAGCGCCGCTAG 58.147 50.000 13.03 4.31 36.40 3.42
27 28 2.303163 TTCTTTATTCAGCGCCGCTA 57.697 45.000 13.03 0.00 36.40 4.26
62 64 3.200887 GAGCCGATCGCCTCGTCAT 62.201 63.158 10.63 0.00 46.18 3.06
81 83 3.098377 TCCAAATCCATCCACAACCATG 58.902 45.455 0.00 0.00 0.00 3.66
114 116 3.433615 GCTGCTACGCTATCCTTATTTGG 59.566 47.826 0.00 0.00 0.00 3.28
118 120 1.202582 CCGCTGCTACGCTATCCTTAT 59.797 52.381 0.00 0.00 0.00 1.73
131 133 4.521062 GAGGATGTCGCCGCTGCT 62.521 66.667 0.00 0.00 34.43 4.24
218 222 1.395826 GCATCCGCTCCTGGACTACT 61.396 60.000 0.00 0.00 41.85 2.57
269 274 2.435805 ACCTAGCACACGATCCATCATT 59.564 45.455 0.00 0.00 0.00 2.57
287 292 0.320421 CATCCACGAACCACGAACCT 60.320 55.000 0.00 0.00 45.77 3.50
352 358 3.885901 CACTCCATCGAACTCCAGATCTA 59.114 47.826 0.00 0.00 0.00 1.98
371 377 2.814835 GGACAACACCCCGGACACT 61.815 63.158 0.73 0.00 0.00 3.55
430 439 1.003839 GCGGACATCCAAGGTGACA 60.004 57.895 0.00 0.00 35.14 3.58
537 549 0.618680 ATGCCTGTCACCTGCCTCTA 60.619 55.000 0.00 0.00 0.00 2.43
707 1284 9.173021 TGTTTTTCCTCATGGTAATATGTGTAG 57.827 33.333 0.00 0.00 34.23 2.74
708 1285 9.693739 ATGTTTTTCCTCATGGTAATATGTGTA 57.306 29.630 0.00 0.00 34.23 2.90
713 1290 9.699410 TTCTCATGTTTTTCCTCATGGTAATAT 57.301 29.630 0.00 0.00 40.94 1.28
725 1302 9.346725 GTAGATTTGATGTTCTCATGTTTTTCC 57.653 33.333 0.00 0.00 34.06 3.13
726 1303 9.346725 GGTAGATTTGATGTTCTCATGTTTTTC 57.653 33.333 0.00 0.00 34.06 2.29
732 1309 6.459298 GCCTTGGTAGATTTGATGTTCTCATG 60.459 42.308 0.00 0.00 34.06 3.07
743 1323 4.275936 CCGGAAATAGCCTTGGTAGATTTG 59.724 45.833 0.00 0.00 0.00 2.32
744 1324 4.165372 TCCGGAAATAGCCTTGGTAGATTT 59.835 41.667 0.00 0.00 0.00 2.17
745 1325 3.714798 TCCGGAAATAGCCTTGGTAGATT 59.285 43.478 0.00 0.00 0.00 2.40
748 1328 3.771577 ATCCGGAAATAGCCTTGGTAG 57.228 47.619 9.01 0.00 0.00 3.18
749 1329 3.581332 CCTATCCGGAAATAGCCTTGGTA 59.419 47.826 9.01 0.00 33.16 3.25
750 1330 2.372172 CCTATCCGGAAATAGCCTTGGT 59.628 50.000 9.01 0.00 33.16 3.67
752 1332 3.771577 ACCTATCCGGAAATAGCCTTG 57.228 47.619 9.01 0.00 36.31 3.61
753 1333 3.747708 GCAACCTATCCGGAAATAGCCTT 60.748 47.826 9.01 0.00 36.31 4.35
754 1334 2.224548 GCAACCTATCCGGAAATAGCCT 60.225 50.000 9.01 0.00 36.31 4.58
756 1336 3.127425 AGCAACCTATCCGGAAATAGC 57.873 47.619 9.01 8.60 36.31 2.97
757 1337 4.235360 CGTAGCAACCTATCCGGAAATAG 58.765 47.826 9.01 6.69 36.31 1.73
758 1338 4.247267 CGTAGCAACCTATCCGGAAATA 57.753 45.455 9.01 0.00 36.31 1.40
779 1506 6.644592 CACATAAGAGGTAAGAAGATAGCAGC 59.355 42.308 0.00 0.00 0.00 5.25
820 1547 2.288640 ACAGTTAGCACAACCGTACCTC 60.289 50.000 0.00 0.00 0.00 3.85
826 1554 2.316237 TGCACAGTTAGCACAACCG 58.684 52.632 0.00 0.00 37.02 4.44
845 1573 4.222124 AGATACCAGCCAACCACTTAAG 57.778 45.455 0.00 0.00 0.00 1.85
864 1592 9.661954 AGACTTCCATTAATGATTCTAGGTAGA 57.338 33.333 17.23 0.00 0.00 2.59
929 1657 5.049680 TCTGATGAGTTTAGGAAAAACGTGC 60.050 40.000 0.00 0.00 35.42 5.34
932 1660 6.363473 GTGTCTGATGAGTTTAGGAAAAACG 58.637 40.000 0.00 0.00 35.42 3.60
945 1673 1.808945 GCTTTGTGGGTGTCTGATGAG 59.191 52.381 0.00 0.00 0.00 2.90
946 1674 1.142667 TGCTTTGTGGGTGTCTGATGA 59.857 47.619 0.00 0.00 0.00 2.92
1069 1797 4.101790 CATGGCGGCGGTGACAAC 62.102 66.667 9.78 0.00 0.00 3.32
1080 1808 2.202987 GAGAGAGTGGCCATGGCG 60.203 66.667 29.90 0.00 43.06 5.69
1239 1967 1.533338 GCATAGTCGACCAGGTACACG 60.533 57.143 13.01 0.00 0.00 4.49
1488 2216 3.108343 TCGATCGCCGAGAAGACC 58.892 61.111 11.09 0.00 43.23 3.85
1602 2330 4.083324 CGCAGGTTGTACTTGTTGATGATT 60.083 41.667 0.00 0.00 0.00 2.57
1797 2525 1.006922 GAACAGGCAGTTTGGCAGC 60.007 57.895 5.41 0.00 46.46 5.25
1903 2631 2.126580 GTAAGCGCTGTCGTCGGT 60.127 61.111 12.58 0.00 39.50 4.69
2408 3145 4.722700 ACCACGGCCCATCAGTGC 62.723 66.667 0.00 0.00 39.17 4.40
2562 3302 2.839425 ACCTTAATTGCCCAATGTGCAT 59.161 40.909 0.00 0.00 38.76 3.96
2574 3314 9.965824 ACAAACTCAATAAACAGACCTTAATTG 57.034 29.630 0.00 0.00 0.00 2.32
2589 3329 8.554835 TTGATGATTCGGTTACAAACTCAATA 57.445 30.769 0.00 0.00 0.00 1.90
2613 3354 7.546250 ACAATCGGAGACCATCTTATAGATT 57.454 36.000 0.00 0.00 42.51 2.40
2659 3408 1.682854 TCTCACCGGTTTACAACGACT 59.317 47.619 2.97 0.00 0.00 4.18
2661 3410 4.724074 ATATCTCACCGGTTTACAACGA 57.276 40.909 2.97 0.00 0.00 3.85
2662 3411 5.585390 AGTATATCTCACCGGTTTACAACG 58.415 41.667 2.97 0.00 0.00 4.10
2663 3412 5.981915 GGAGTATATCTCACCGGTTTACAAC 59.018 44.000 2.97 0.00 44.40 3.32
2685 3437 0.249120 CTAACACGATGGCACCAGGA 59.751 55.000 0.00 0.00 0.00 3.86
2686 3438 0.744414 CCTAACACGATGGCACCAGG 60.744 60.000 0.00 0.00 0.00 4.45
2687 3439 0.036388 ACCTAACACGATGGCACCAG 60.036 55.000 0.00 0.00 0.00 4.00
2688 3440 0.398696 AACCTAACACGATGGCACCA 59.601 50.000 0.00 0.00 0.00 4.17
2689 3441 1.199097 CAAACCTAACACGATGGCACC 59.801 52.381 0.00 0.00 0.00 5.01
2691 3443 1.072489 TCCAAACCTAACACGATGGCA 59.928 47.619 0.00 0.00 0.00 4.92
2692 3444 1.467342 GTCCAAACCTAACACGATGGC 59.533 52.381 0.00 0.00 0.00 4.40
2693 3445 3.000727 GAGTCCAAACCTAACACGATGG 58.999 50.000 0.00 0.00 0.00 3.51
2695 3447 4.553330 ATGAGTCCAAACCTAACACGAT 57.447 40.909 0.00 0.00 0.00 3.73
2696 3448 5.221481 TGTTATGAGTCCAAACCTAACACGA 60.221 40.000 0.00 0.00 0.00 4.35
2697 3449 4.992319 TGTTATGAGTCCAAACCTAACACG 59.008 41.667 3.11 0.00 0.00 4.49
2698 3450 6.430000 ACATGTTATGAGTCCAAACCTAACAC 59.570 38.462 0.00 0.00 33.41 3.32
2699 3451 6.539173 ACATGTTATGAGTCCAAACCTAACA 58.461 36.000 0.00 0.00 34.63 2.41
2700 3452 7.305474 CAACATGTTATGAGTCCAAACCTAAC 58.695 38.462 11.53 0.00 0.00 2.34
2701 3453 6.432783 CCAACATGTTATGAGTCCAAACCTAA 59.567 38.462 11.53 0.00 0.00 2.69
2702 3454 5.943416 CCAACATGTTATGAGTCCAAACCTA 59.057 40.000 11.53 0.00 0.00 3.08
2703 3455 4.766891 CCAACATGTTATGAGTCCAAACCT 59.233 41.667 11.53 0.00 0.00 3.50
2704 3456 4.082245 CCCAACATGTTATGAGTCCAAACC 60.082 45.833 11.53 0.00 0.00 3.27
2705 3457 4.522789 ACCCAACATGTTATGAGTCCAAAC 59.477 41.667 11.53 0.00 0.00 2.93
2706 3458 4.735369 ACCCAACATGTTATGAGTCCAAA 58.265 39.130 11.53 0.00 0.00 3.28
2707 3459 4.380843 ACCCAACATGTTATGAGTCCAA 57.619 40.909 11.53 0.00 0.00 3.53
2708 3460 4.323945 GGTACCCAACATGTTATGAGTCCA 60.324 45.833 11.53 0.00 0.00 4.02
2709 3461 4.196971 GGTACCCAACATGTTATGAGTCC 58.803 47.826 11.53 6.46 0.00 3.85
2727 3479 7.338449 TCTTCATTGCTTTTTGTATAGGGGTAC 59.662 37.037 0.00 0.00 0.00 3.34
2728 3480 7.406916 TCTTCATTGCTTTTTGTATAGGGGTA 58.593 34.615 0.00 0.00 0.00 3.69
2729 3481 6.252995 TCTTCATTGCTTTTTGTATAGGGGT 58.747 36.000 0.00 0.00 0.00 4.95
2730 3482 6.773976 TCTTCATTGCTTTTTGTATAGGGG 57.226 37.500 0.00 0.00 0.00 4.79
2731 3483 7.545615 GGTTTCTTCATTGCTTTTTGTATAGGG 59.454 37.037 0.00 0.00 0.00 3.53
2732 3484 7.545615 GGGTTTCTTCATTGCTTTTTGTATAGG 59.454 37.037 0.00 0.00 0.00 2.57
2733 3485 7.545615 GGGGTTTCTTCATTGCTTTTTGTATAG 59.454 37.037 0.00 0.00 0.00 1.31
2734 3486 7.382898 GGGGTTTCTTCATTGCTTTTTGTATA 58.617 34.615 0.00 0.00 0.00 1.47
2735 3487 6.230472 GGGGTTTCTTCATTGCTTTTTGTAT 58.770 36.000 0.00 0.00 0.00 2.29
2736 3488 5.454045 GGGGGTTTCTTCATTGCTTTTTGTA 60.454 40.000 0.00 0.00 0.00 2.41
2737 3489 4.450976 GGGGTTTCTTCATTGCTTTTTGT 58.549 39.130 0.00 0.00 0.00 2.83
2738 3490 3.814842 GGGGGTTTCTTCATTGCTTTTTG 59.185 43.478 0.00 0.00 0.00 2.44
2739 3491 3.457749 TGGGGGTTTCTTCATTGCTTTTT 59.542 39.130 0.00 0.00 0.00 1.94
2740 3492 3.044894 TGGGGGTTTCTTCATTGCTTTT 58.955 40.909 0.00 0.00 0.00 2.27
2741 3493 2.634453 CTGGGGGTTTCTTCATTGCTTT 59.366 45.455 0.00 0.00 0.00 3.51
2742 3494 2.250924 CTGGGGGTTTCTTCATTGCTT 58.749 47.619 0.00 0.00 0.00 3.91
2743 3495 1.147817 ACTGGGGGTTTCTTCATTGCT 59.852 47.619 0.00 0.00 0.00 3.91
2744 3496 1.273327 CACTGGGGGTTTCTTCATTGC 59.727 52.381 0.00 0.00 0.00 3.56
2745 3497 2.875296 TCACTGGGGGTTTCTTCATTG 58.125 47.619 0.00 0.00 0.00 2.82
2746 3498 3.833559 ATCACTGGGGGTTTCTTCATT 57.166 42.857 0.00 0.00 0.00 2.57
2747 3499 3.833559 AATCACTGGGGGTTTCTTCAT 57.166 42.857 0.00 0.00 0.00 2.57
2748 3500 4.733077 TTAATCACTGGGGGTTTCTTCA 57.267 40.909 0.00 0.00 0.00 3.02
2751 3503 3.769300 GCAATTAATCACTGGGGGTTTCT 59.231 43.478 0.00 0.00 0.00 2.52
2759 3511 0.732571 ACGCCGCAATTAATCACTGG 59.267 50.000 0.00 0.00 0.00 4.00
2760 3512 1.396648 TGACGCCGCAATTAATCACTG 59.603 47.619 0.00 0.00 0.00 3.66
2764 3516 4.778773 GCAATTTTGACGCCGCAATTAATC 60.779 41.667 0.00 0.00 0.00 1.75
2774 3526 2.478831 TGGAAAAGCAATTTTGACGCC 58.521 42.857 0.00 0.00 0.00 5.68
2789 3541 2.983192 TGACCCTAGAACACCATGGAAA 59.017 45.455 21.47 0.00 0.00 3.13
2790 3542 2.571653 CTGACCCTAGAACACCATGGAA 59.428 50.000 21.47 0.00 0.00 3.53
2791 3543 2.187958 CTGACCCTAGAACACCATGGA 58.812 52.381 21.47 0.00 0.00 3.41
2792 3544 1.407437 GCTGACCCTAGAACACCATGG 60.407 57.143 11.19 11.19 0.00 3.66
2793 3545 1.556911 AGCTGACCCTAGAACACCATG 59.443 52.381 0.00 0.00 0.00 3.66
2794 3546 1.958288 AGCTGACCCTAGAACACCAT 58.042 50.000 0.00 0.00 0.00 3.55
2795 3547 1.347707 CAAGCTGACCCTAGAACACCA 59.652 52.381 0.00 0.00 0.00 4.17
2796 3548 1.348036 ACAAGCTGACCCTAGAACACC 59.652 52.381 0.00 0.00 0.00 4.16
2797 3549 2.417719 CACAAGCTGACCCTAGAACAC 58.582 52.381 0.00 0.00 0.00 3.32
2798 3550 1.347707 CCACAAGCTGACCCTAGAACA 59.652 52.381 0.00 0.00 0.00 3.18
2799 3551 1.348036 ACCACAAGCTGACCCTAGAAC 59.652 52.381 0.00 0.00 0.00 3.01
2800 3552 1.347707 CACCACAAGCTGACCCTAGAA 59.652 52.381 0.00 0.00 0.00 2.10
2801 3553 0.976641 CACCACAAGCTGACCCTAGA 59.023 55.000 0.00 0.00 0.00 2.43
2802 3554 0.976641 TCACCACAAGCTGACCCTAG 59.023 55.000 0.00 0.00 0.00 3.02
2803 3555 1.347707 CTTCACCACAAGCTGACCCTA 59.652 52.381 0.00 0.00 0.00 3.53
2804 3556 0.109342 CTTCACCACAAGCTGACCCT 59.891 55.000 0.00 0.00 0.00 4.34
2805 3557 0.890996 CCTTCACCACAAGCTGACCC 60.891 60.000 0.00 0.00 0.00 4.46
2806 3558 1.518903 GCCTTCACCACAAGCTGACC 61.519 60.000 0.00 0.00 0.00 4.02
2807 3559 0.819259 TGCCTTCACCACAAGCTGAC 60.819 55.000 0.00 0.00 0.00 3.51
2808 3560 0.106769 TTGCCTTCACCACAAGCTGA 60.107 50.000 0.00 0.00 0.00 4.26
2809 3561 0.746063 TTTGCCTTCACCACAAGCTG 59.254 50.000 0.00 0.00 0.00 4.24
2810 3562 0.746659 GTTTGCCTTCACCACAAGCT 59.253 50.000 0.00 0.00 0.00 3.74
2811 3563 0.594796 CGTTTGCCTTCACCACAAGC 60.595 55.000 0.00 0.00 0.00 4.01
2812 3564 0.738389 ACGTTTGCCTTCACCACAAG 59.262 50.000 0.00 0.00 0.00 3.16
2813 3565 1.944024 CTACGTTTGCCTTCACCACAA 59.056 47.619 0.00 0.00 0.00 3.33
2814 3566 1.139256 TCTACGTTTGCCTTCACCACA 59.861 47.619 0.00 0.00 0.00 4.17
2815 3567 1.873698 TCTACGTTTGCCTTCACCAC 58.126 50.000 0.00 0.00 0.00 4.16
2816 3568 2.215196 GTTCTACGTTTGCCTTCACCA 58.785 47.619 0.00 0.00 0.00 4.17
2817 3569 2.215196 TGTTCTACGTTTGCCTTCACC 58.785 47.619 0.00 0.00 0.00 4.02
2818 3570 3.955771 TTGTTCTACGTTTGCCTTCAC 57.044 42.857 0.00 0.00 0.00 3.18
2819 3571 3.314080 CCTTTGTTCTACGTTTGCCTTCA 59.686 43.478 0.00 0.00 0.00 3.02
2820 3572 3.314357 ACCTTTGTTCTACGTTTGCCTTC 59.686 43.478 0.00 0.00 0.00 3.46
2821 3573 3.066203 CACCTTTGTTCTACGTTTGCCTT 59.934 43.478 0.00 0.00 0.00 4.35
2822 3574 2.616842 CACCTTTGTTCTACGTTTGCCT 59.383 45.455 0.00 0.00 0.00 4.75
2823 3575 2.287368 CCACCTTTGTTCTACGTTTGCC 60.287 50.000 0.00 0.00 0.00 4.52
2824 3576 2.857104 GCCACCTTTGTTCTACGTTTGC 60.857 50.000 0.00 0.00 0.00 3.68
2825 3577 2.356382 TGCCACCTTTGTTCTACGTTTG 59.644 45.455 0.00 0.00 0.00 2.93
2826 3578 2.356695 GTGCCACCTTTGTTCTACGTTT 59.643 45.455 0.00 0.00 0.00 3.60
2827 3579 1.944709 GTGCCACCTTTGTTCTACGTT 59.055 47.619 0.00 0.00 0.00 3.99
2828 3580 1.140252 AGTGCCACCTTTGTTCTACGT 59.860 47.619 0.00 0.00 0.00 3.57
2829 3581 1.798813 GAGTGCCACCTTTGTTCTACG 59.201 52.381 0.00 0.00 0.00 3.51
2830 3582 2.548480 GTGAGTGCCACCTTTGTTCTAC 59.452 50.000 0.00 0.00 39.86 2.59
2831 3583 2.438021 AGTGAGTGCCACCTTTGTTCTA 59.562 45.455 0.00 0.00 46.87 2.10
2832 3584 1.212935 AGTGAGTGCCACCTTTGTTCT 59.787 47.619 0.00 0.00 46.87 3.01
2833 3585 1.680338 AGTGAGTGCCACCTTTGTTC 58.320 50.000 0.00 0.00 46.87 3.18
2834 3586 2.851195 CTAGTGAGTGCCACCTTTGTT 58.149 47.619 0.00 0.00 46.87 2.83
2835 3587 1.543429 GCTAGTGAGTGCCACCTTTGT 60.543 52.381 0.00 0.00 46.87 2.83
2836 3588 1.160137 GCTAGTGAGTGCCACCTTTG 58.840 55.000 0.00 0.00 46.87 2.77
2837 3589 0.764890 TGCTAGTGAGTGCCACCTTT 59.235 50.000 0.00 0.00 46.87 3.11
2838 3590 0.035458 GTGCTAGTGAGTGCCACCTT 59.965 55.000 0.00 0.00 46.87 3.50
2839 3591 1.121407 TGTGCTAGTGAGTGCCACCT 61.121 55.000 0.00 0.00 46.87 4.00
2840 3592 0.250295 TTGTGCTAGTGAGTGCCACC 60.250 55.000 0.00 0.00 46.87 4.61
2841 3593 1.151668 CTTGTGCTAGTGAGTGCCAC 58.848 55.000 0.00 0.00 46.03 5.01
2842 3594 0.035317 CCTTGTGCTAGTGAGTGCCA 59.965 55.000 0.00 0.00 0.00 4.92
2843 3595 0.674895 CCCTTGTGCTAGTGAGTGCC 60.675 60.000 0.00 0.00 0.00 5.01
2844 3596 0.035458 ACCCTTGTGCTAGTGAGTGC 59.965 55.000 0.00 0.00 0.00 4.40
2845 3597 1.338200 GGACCCTTGTGCTAGTGAGTG 60.338 57.143 0.00 0.00 0.00 3.51
2846 3598 0.977395 GGACCCTTGTGCTAGTGAGT 59.023 55.000 0.00 0.00 0.00 3.41
2847 3599 1.205893 GAGGACCCTTGTGCTAGTGAG 59.794 57.143 0.00 0.00 43.99 3.51
2874 3626 2.112029 TGCGGAGTAATAGCAGCGA 58.888 52.632 0.00 0.00 35.81 4.93
2904 3656 0.464036 TAGTAGGGTGCCGCATCTTG 59.536 55.000 3.09 0.00 0.00 3.02
2918 3670 6.708949 ACCTGTACATGTTTGTTTGGTAGTAG 59.291 38.462 2.30 0.00 37.28 2.57
2919 3671 6.593807 ACCTGTACATGTTTGTTTGGTAGTA 58.406 36.000 2.30 0.00 37.28 1.82
2920 3672 5.442391 ACCTGTACATGTTTGTTTGGTAGT 58.558 37.500 2.30 0.00 37.28 2.73
2922 3674 5.764192 GGTACCTGTACATGTTTGTTTGGTA 59.236 40.000 2.30 5.08 37.78 3.25
2923 3675 4.581409 GGTACCTGTACATGTTTGTTTGGT 59.419 41.667 2.30 6.04 37.78 3.67
2924 3676 4.319911 CGGTACCTGTACATGTTTGTTTGG 60.320 45.833 10.90 0.00 37.78 3.28
2926 3678 4.453751 ACGGTACCTGTACATGTTTGTTT 58.546 39.130 10.90 0.00 37.78 2.83
2928 3680 3.756933 ACGGTACCTGTACATGTTTGT 57.243 42.857 10.90 3.54 37.78 2.83
2932 3684 3.424703 ACAGTACGGTACCTGTACATGT 58.575 45.455 30.79 27.46 43.61 3.21
2933 3685 4.445452 AACAGTACGGTACCTGTACATG 57.555 45.455 30.79 27.07 43.61 3.21
2935 3687 5.123820 GTCATAACAGTACGGTACCTGTACA 59.876 44.000 30.79 19.55 43.61 2.90
2936 3688 5.573146 GTCATAACAGTACGGTACCTGTAC 58.427 45.833 26.24 26.24 41.94 2.90
2937 3689 4.332543 CGTCATAACAGTACGGTACCTGTA 59.667 45.833 14.41 11.03 33.13 2.74
2938 3690 3.127548 CGTCATAACAGTACGGTACCTGT 59.872 47.826 14.41 14.08 33.13 4.00
2939 3691 3.688272 CGTCATAACAGTACGGTACCTG 58.312 50.000 14.41 13.52 33.13 4.00
2940 3692 2.098117 GCGTCATAACAGTACGGTACCT 59.902 50.000 14.41 0.00 37.12 3.08
2941 3693 2.159393 TGCGTCATAACAGTACGGTACC 60.159 50.000 14.41 0.16 37.12 3.34
2942 3694 2.848302 GTGCGTCATAACAGTACGGTAC 59.152 50.000 10.29 10.29 37.12 3.34
2943 3695 2.159393 GGTGCGTCATAACAGTACGGTA 60.159 50.000 0.00 0.00 37.12 4.02
2944 3696 1.403249 GGTGCGTCATAACAGTACGGT 60.403 52.381 0.00 0.00 37.12 4.83
2945 3697 1.274596 GGTGCGTCATAACAGTACGG 58.725 55.000 0.00 0.00 37.12 4.02
2946 3698 1.985334 TGGTGCGTCATAACAGTACG 58.015 50.000 0.00 0.00 39.55 3.67
2947 3699 7.884816 ATATATTGGTGCGTCATAACAGTAC 57.115 36.000 0.00 0.00 0.00 2.73
2948 3700 8.896320 AAATATATTGGTGCGTCATAACAGTA 57.104 30.769 0.00 0.00 0.00 2.74
2949 3701 7.801716 AAATATATTGGTGCGTCATAACAGT 57.198 32.000 0.00 0.00 0.00 3.55
2950 3702 8.227791 GGTAAATATATTGGTGCGTCATAACAG 58.772 37.037 0.00 0.00 0.00 3.16
2951 3703 7.173562 GGGTAAATATATTGGTGCGTCATAACA 59.826 37.037 0.00 0.00 0.00 2.41
2952 3704 7.389607 AGGGTAAATATATTGGTGCGTCATAAC 59.610 37.037 0.00 0.00 0.00 1.89
2953 3705 7.455058 AGGGTAAATATATTGGTGCGTCATAA 58.545 34.615 0.00 0.00 0.00 1.90
2954 3706 7.011499 AGGGTAAATATATTGGTGCGTCATA 57.989 36.000 0.00 0.00 0.00 2.15
2955 3707 5.876357 AGGGTAAATATATTGGTGCGTCAT 58.124 37.500 0.00 0.00 0.00 3.06
2956 3708 5.298989 AGGGTAAATATATTGGTGCGTCA 57.701 39.130 0.00 0.00 0.00 4.35
2957 3709 4.387862 CGAGGGTAAATATATTGGTGCGTC 59.612 45.833 0.00 0.00 0.00 5.19
2958 3710 4.039488 TCGAGGGTAAATATATTGGTGCGT 59.961 41.667 0.00 0.00 0.00 5.24
2959 3711 4.387862 GTCGAGGGTAAATATATTGGTGCG 59.612 45.833 0.00 0.00 0.00 5.34
2960 3712 4.387862 CGTCGAGGGTAAATATATTGGTGC 59.612 45.833 0.00 0.00 0.00 5.01
2961 3713 4.927425 CCGTCGAGGGTAAATATATTGGTG 59.073 45.833 16.08 0.00 35.97 4.17
2962 3714 4.834496 TCCGTCGAGGGTAAATATATTGGT 59.166 41.667 22.72 0.00 41.52 3.67
2963 3715 5.184479 TCTCCGTCGAGGGTAAATATATTGG 59.816 44.000 22.72 0.00 41.52 3.16
2964 3716 6.263516 TCTCCGTCGAGGGTAAATATATTG 57.736 41.667 22.72 3.51 41.52 1.90
2970 3722 1.687123 CCATCTCCGTCGAGGGTAAAT 59.313 52.381 22.72 12.21 41.52 1.40
2999 3751 1.340017 CGGATGTTGTGAAGTCCCCAT 60.340 52.381 0.00 0.00 0.00 4.00
3007 3759 9.208022 GATCTATATTTGATCGGATGTTGTGAA 57.792 33.333 0.00 0.00 32.29 3.18
3024 3776 5.336531 GGACGTGAACCCGATGATCTATATT 60.337 44.000 0.00 0.00 0.00 1.28
3025 3777 4.158025 GGACGTGAACCCGATGATCTATAT 59.842 45.833 0.00 0.00 0.00 0.86
3027 3779 2.296471 GGACGTGAACCCGATGATCTAT 59.704 50.000 0.00 0.00 0.00 1.98
3031 3783 0.830648 ATGGACGTGAACCCGATGAT 59.169 50.000 0.00 0.00 0.00 2.45
3036 3788 2.508439 CGGATGGACGTGAACCCG 60.508 66.667 0.00 0.00 0.00 5.28
3037 3789 2.125269 CCGGATGGACGTGAACCC 60.125 66.667 0.00 0.00 37.49 4.11
3039 3791 3.186047 CGCCGGATGGACGTGAAC 61.186 66.667 5.05 0.00 37.49 3.18
3056 3809 1.112113 TAGCCCGAGTGTTCCATCTC 58.888 55.000 0.00 0.00 0.00 2.75
3139 3896 1.822990 CCTGGTTGGTAGTAGCTCGAA 59.177 52.381 0.00 0.00 0.00 3.71
3151 3908 4.158394 CCATCTGAATTGTAACCTGGTTGG 59.842 45.833 22.04 6.85 42.93 3.77
3180 3937 2.031465 AAACCAGGCCGTACCACG 59.969 61.111 0.00 0.00 43.14 4.94
3221 3978 1.440938 CTAGAGACGTGCTCCTCCGG 61.441 65.000 0.00 0.00 45.10 5.14
3232 3989 2.286891 GCCGGCTTAGTAACTAGAGACG 60.287 54.545 22.15 0.00 40.23 4.18
3288 4045 0.969409 GCCCTCTTGCTTGCAGGAAT 60.969 55.000 8.67 0.00 0.00 3.01
3298 4055 5.240403 CCATTATCTAGAAAAGCCCTCTTGC 59.760 44.000 0.00 0.00 31.78 4.01
3318 4075 5.105957 TGCAATTCTATTTACGCACACCATT 60.106 36.000 0.00 0.00 0.00 3.16
3319 4076 4.397730 TGCAATTCTATTTACGCACACCAT 59.602 37.500 0.00 0.00 0.00 3.55
3320 4077 3.753797 TGCAATTCTATTTACGCACACCA 59.246 39.130 0.00 0.00 0.00 4.17
3325 4082 5.637006 AAGGTTGCAATTCTATTTACGCA 57.363 34.783 0.59 0.00 0.00 5.24
3327 4084 7.728895 CCAAAAAGGTTGCAATTCTATTTACG 58.271 34.615 0.59 3.82 0.00 3.18
3358 4115 7.903995 AAAGTTTTGCTGATTGTCTCAAAAA 57.096 28.000 0.00 0.00 39.26 1.94
3359 4116 9.598517 AATAAAGTTTTGCTGATTGTCTCAAAA 57.401 25.926 0.00 0.00 36.45 2.44
3360 4117 9.033481 CAATAAAGTTTTGCTGATTGTCTCAAA 57.967 29.630 0.00 0.00 32.14 2.69
3361 4118 8.412456 TCAATAAAGTTTTGCTGATTGTCTCAA 58.588 29.630 0.00 0.00 34.99 3.02
3362 4119 7.862372 GTCAATAAAGTTTTGCTGATTGTCTCA 59.138 33.333 0.00 0.00 34.99 3.27
3363 4120 7.327032 GGTCAATAAAGTTTTGCTGATTGTCTC 59.673 37.037 0.00 0.00 34.99 3.36
3364 4121 7.147976 GGTCAATAAAGTTTTGCTGATTGTCT 58.852 34.615 0.00 0.00 34.99 3.41
3365 4122 6.366061 GGGTCAATAAAGTTTTGCTGATTGTC 59.634 38.462 0.00 0.00 34.99 3.18
3366 4123 6.223120 GGGTCAATAAAGTTTTGCTGATTGT 58.777 36.000 0.00 0.00 34.99 2.71
3367 4124 5.345741 CGGGTCAATAAAGTTTTGCTGATTG 59.654 40.000 0.00 0.00 34.84 2.67
3368 4125 5.010617 ACGGGTCAATAAAGTTTTGCTGATT 59.989 36.000 0.00 0.00 0.00 2.57
3369 4126 4.522789 ACGGGTCAATAAAGTTTTGCTGAT 59.477 37.500 0.00 0.00 0.00 2.90
3370 4127 3.886505 ACGGGTCAATAAAGTTTTGCTGA 59.113 39.130 0.00 0.00 0.00 4.26
3371 4128 4.226761 GACGGGTCAATAAAGTTTTGCTG 58.773 43.478 0.00 0.00 0.00 4.41
3372 4129 3.886505 TGACGGGTCAATAAAGTTTTGCT 59.113 39.130 0.00 0.00 36.53 3.91
3373 4130 3.978855 GTGACGGGTCAATAAAGTTTTGC 59.021 43.478 2.58 0.00 41.85 3.68
3374 4131 4.973663 GTGTGACGGGTCAATAAAGTTTTG 59.026 41.667 2.58 0.00 41.85 2.44
3375 4132 4.641094 TGTGTGACGGGTCAATAAAGTTTT 59.359 37.500 2.58 0.00 41.85 2.43
3376 4133 4.200874 TGTGTGACGGGTCAATAAAGTTT 58.799 39.130 2.58 0.00 41.85 2.66
3377 4134 3.811083 TGTGTGACGGGTCAATAAAGTT 58.189 40.909 2.58 0.00 41.85 2.66
3378 4135 3.181458 ACTGTGTGACGGGTCAATAAAGT 60.181 43.478 2.58 4.07 41.85 2.66
3379 4136 3.399330 ACTGTGTGACGGGTCAATAAAG 58.601 45.455 2.58 3.48 41.85 1.85
3380 4137 3.478857 ACTGTGTGACGGGTCAATAAA 57.521 42.857 2.58 0.00 41.85 1.40
3381 4138 3.478857 AACTGTGTGACGGGTCAATAA 57.521 42.857 2.58 0.00 41.85 1.40
3382 4139 3.478857 AAACTGTGTGACGGGTCAATA 57.521 42.857 2.58 0.00 41.85 1.90
3383 4140 2.341846 AAACTGTGTGACGGGTCAAT 57.658 45.000 2.58 0.00 41.85 2.57
3384 4141 2.093606 TGTAAACTGTGTGACGGGTCAA 60.094 45.455 2.58 0.00 41.85 3.18
3385 4142 1.481363 TGTAAACTGTGTGACGGGTCA 59.519 47.619 0.00 0.00 37.24 4.02
3386 4143 2.228138 TGTAAACTGTGTGACGGGTC 57.772 50.000 0.00 0.00 0.00 4.46
3387 4144 2.489971 CATGTAAACTGTGTGACGGGT 58.510 47.619 0.00 0.00 0.00 5.28
3388 4145 1.804151 CCATGTAAACTGTGTGACGGG 59.196 52.381 0.00 0.00 0.00 5.28
3389 4146 2.478894 GTCCATGTAAACTGTGTGACGG 59.521 50.000 0.00 0.00 0.00 4.79
3390 4147 2.154963 CGTCCATGTAAACTGTGTGACG 59.845 50.000 0.00 0.00 0.00 4.35
3391 4148 3.386486 TCGTCCATGTAAACTGTGTGAC 58.614 45.455 0.00 0.00 0.00 3.67
3392 4149 3.737032 TCGTCCATGTAAACTGTGTGA 57.263 42.857 0.00 0.00 0.00 3.58
3393 4150 4.804608 TTTCGTCCATGTAAACTGTGTG 57.195 40.909 0.00 0.00 0.00 3.82
3394 4151 5.060506 TCATTTCGTCCATGTAAACTGTGT 58.939 37.500 0.00 0.00 0.00 3.72
3395 4152 5.605564 TCATTTCGTCCATGTAAACTGTG 57.394 39.130 0.00 0.00 0.00 3.66
3396 4153 5.995282 TCTTCATTTCGTCCATGTAAACTGT 59.005 36.000 0.00 0.00 0.00 3.55
3397 4154 6.480524 TCTTCATTTCGTCCATGTAAACTG 57.519 37.500 0.00 0.00 0.00 3.16
3398 4155 7.106239 AGATCTTCATTTCGTCCATGTAAACT 58.894 34.615 0.00 0.00 0.00 2.66
3399 4156 7.308782 AGATCTTCATTTCGTCCATGTAAAC 57.691 36.000 0.00 0.00 0.00 2.01
3400 4157 6.538742 GGAGATCTTCATTTCGTCCATGTAAA 59.461 38.462 0.00 0.00 0.00 2.01
3401 4158 6.049149 GGAGATCTTCATTTCGTCCATGTAA 58.951 40.000 0.00 0.00 0.00 2.41
3402 4159 5.601662 GGAGATCTTCATTTCGTCCATGTA 58.398 41.667 0.00 0.00 0.00 2.29
3403 4160 4.446371 GGAGATCTTCATTTCGTCCATGT 58.554 43.478 0.00 0.00 0.00 3.21
3404 4161 3.492383 CGGAGATCTTCATTTCGTCCATG 59.508 47.826 0.96 0.00 0.00 3.66
3405 4162 3.493350 CCGGAGATCTTCATTTCGTCCAT 60.493 47.826 0.00 0.00 0.00 3.41
3406 4163 2.159099 CCGGAGATCTTCATTTCGTCCA 60.159 50.000 0.00 0.00 0.00 4.02
3407 4164 2.474816 CCGGAGATCTTCATTTCGTCC 58.525 52.381 0.00 0.00 0.00 4.79
3408 4165 2.474816 CCCGGAGATCTTCATTTCGTC 58.525 52.381 0.73 0.00 0.00 4.20
3409 4166 1.139058 CCCCGGAGATCTTCATTTCGT 59.861 52.381 0.73 0.00 0.00 3.85
3410 4167 1.139058 ACCCCGGAGATCTTCATTTCG 59.861 52.381 0.73 0.00 0.00 3.46
3411 4168 2.565841 CACCCCGGAGATCTTCATTTC 58.434 52.381 0.73 0.00 0.00 2.17
3412 4169 1.212935 CCACCCCGGAGATCTTCATTT 59.787 52.381 0.73 0.00 36.56 2.32
3413 4170 0.839946 CCACCCCGGAGATCTTCATT 59.160 55.000 0.73 0.00 36.56 2.57
3414 4171 1.700042 GCCACCCCGGAGATCTTCAT 61.700 60.000 0.73 0.00 36.56 2.57
3415 4172 2.367202 GCCACCCCGGAGATCTTCA 61.367 63.158 0.73 0.00 36.56 3.02
3416 4173 2.506472 GCCACCCCGGAGATCTTC 59.494 66.667 0.73 0.00 36.56 2.87
3417 4174 3.090532 GGCCACCCCGGAGATCTT 61.091 66.667 0.73 0.00 36.56 2.40
3431 4188 1.175983 TCGTCATGTTTGGTTGGGCC 61.176 55.000 0.00 0.00 37.90 5.80
3432 4189 0.039527 GTCGTCATGTTTGGTTGGGC 60.040 55.000 0.00 0.00 0.00 5.36
3433 4190 0.596082 GGTCGTCATGTTTGGTTGGG 59.404 55.000 0.00 0.00 0.00 4.12
3434 4191 1.313772 TGGTCGTCATGTTTGGTTGG 58.686 50.000 0.00 0.00 0.00 3.77
3435 4192 2.858260 GCTTGGTCGTCATGTTTGGTTG 60.858 50.000 0.00 0.00 0.00 3.77
3436 4193 1.336755 GCTTGGTCGTCATGTTTGGTT 59.663 47.619 0.00 0.00 0.00 3.67
3437 4194 0.951558 GCTTGGTCGTCATGTTTGGT 59.048 50.000 0.00 0.00 0.00 3.67
3438 4195 0.240945 GGCTTGGTCGTCATGTTTGG 59.759 55.000 0.00 0.00 0.00 3.28
3439 4196 0.240945 GGGCTTGGTCGTCATGTTTG 59.759 55.000 0.00 0.00 0.00 2.93
3440 4197 0.893727 GGGGCTTGGTCGTCATGTTT 60.894 55.000 0.00 0.00 0.00 2.83
3441 4198 1.303317 GGGGCTTGGTCGTCATGTT 60.303 57.895 0.00 0.00 0.00 2.71
3442 4199 2.351276 GGGGCTTGGTCGTCATGT 59.649 61.111 0.00 0.00 0.00 3.21
3443 4200 1.746615 CTGGGGCTTGGTCGTCATG 60.747 63.158 0.00 0.00 0.00 3.07
3444 4201 1.779061 AACTGGGGCTTGGTCGTCAT 61.779 55.000 0.00 0.00 0.00 3.06
3445 4202 1.990160 AAACTGGGGCTTGGTCGTCA 61.990 55.000 0.00 0.00 0.00 4.35
3446 4203 0.035739 TAAACTGGGGCTTGGTCGTC 59.964 55.000 0.00 0.00 0.00 4.20
3447 4204 0.475044 TTAAACTGGGGCTTGGTCGT 59.525 50.000 0.00 0.00 0.00 4.34
3448 4205 1.165270 CTTAAACTGGGGCTTGGTCG 58.835 55.000 0.00 0.00 0.00 4.79
3449 4206 1.886542 CACTTAAACTGGGGCTTGGTC 59.113 52.381 0.00 0.00 0.00 4.02
3450 4207 1.995376 CACTTAAACTGGGGCTTGGT 58.005 50.000 0.00 0.00 0.00 3.67
3451 4208 0.603065 GCACTTAAACTGGGGCTTGG 59.397 55.000 0.00 0.00 0.00 3.61
3452 4209 1.327303 TGCACTTAAACTGGGGCTTG 58.673 50.000 0.00 0.00 0.00 4.01
3453 4210 1.895131 CATGCACTTAAACTGGGGCTT 59.105 47.619 0.00 0.00 0.00 4.35
3454 4211 1.549203 CATGCACTTAAACTGGGGCT 58.451 50.000 0.00 0.00 0.00 5.19
3455 4212 0.108662 GCATGCACTTAAACTGGGGC 60.109 55.000 14.21 0.00 0.00 5.80
3456 4213 1.549203 AGCATGCACTTAAACTGGGG 58.451 50.000 21.98 0.00 0.00 4.96
3457 4214 3.319755 CAAAGCATGCACTTAAACTGGG 58.680 45.455 21.98 0.00 0.00 4.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.