Multiple sequence alignment - TraesCS4A01G302500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G302500 chr4A 100.000 4434 0 0 1 4434 598811145 598806712 0.000000e+00 8189.0
1 TraesCS4A01G302500 chr4A 83.128 812 76 24 740 1520 599126057 599125276 0.000000e+00 684.0
2 TraesCS4A01G302500 chr4A 82.759 812 80 19 740 1520 599248097 599247315 0.000000e+00 669.0
3 TraesCS4A01G302500 chr4A 82.780 813 77 22 740 1520 599159018 599158237 0.000000e+00 667.0
4 TraesCS4A01G302500 chr4A 97.619 378 3 1 1 378 658181007 658181378 1.040000e-180 643.0
5 TraesCS4A01G302500 chr4A 96.842 380 11 1 1 379 728814462 728814083 6.260000e-178 634.0
6 TraesCS4A01G302500 chr4A 81.886 806 90 23 740 1520 599084843 599084069 2.910000e-176 628.0
7 TraesCS4A01G302500 chr4A 81.615 805 90 20 740 1518 599102566 599101794 8.150000e-172 614.0
8 TraesCS4A01G302500 chr4A 81.491 805 90 22 740 1518 599146785 599146014 1.360000e-169 606.0
9 TraesCS4A01G302500 chr4A 78.280 686 93 32 828 1497 598910483 598909838 1.500000e-104 390.0
10 TraesCS4A01G302500 chr4A 77.574 709 103 35 828 1518 598960854 598960184 1.160000e-100 377.0
11 TraesCS4A01G302500 chr4A 81.100 291 48 6 1624 1910 598786963 598786676 4.460000e-55 226.0
12 TraesCS4A01G302500 chr4A 87.940 199 9 7 740 928 599202336 599202143 2.080000e-53 220.0
13 TraesCS4A01G302500 chr4D 95.220 2845 111 15 1594 4433 4465102 4467926 0.000000e+00 4477.0
14 TraesCS4A01G302500 chr4D 78.327 2044 345 61 1908 3914 4418189 4420171 0.000000e+00 1230.0
15 TraesCS4A01G302500 chr4D 85.130 733 50 26 834 1545 4464302 4464996 0.000000e+00 695.0
16 TraesCS4A01G302500 chr4D 82.936 797 99 12 740 1520 4416883 4417658 0.000000e+00 684.0
17 TraesCS4A01G302500 chr4D 81.337 793 108 22 740 1520 4458750 4459514 3.790000e-170 608.0
18 TraesCS4A01G302500 chr4D 83.947 380 25 15 378 734 4463882 4464248 9.190000e-87 331.0
19 TraesCS4A01G302500 chr4B 92.351 2850 148 23 1594 4433 7382279 7385068 0.000000e+00 3991.0
20 TraesCS4A01G302500 chr4B 78.299 2046 343 61 1912 3914 7354659 7356646 0.000000e+00 1225.0
21 TraesCS4A01G302500 chr4B 78.203 2014 338 54 1908 3880 7171683 7173636 0.000000e+00 1194.0
22 TraesCS4A01G302500 chr4B 78.075 2016 337 59 1908 3880 7309749 7311702 0.000000e+00 1177.0
23 TraesCS4A01G302500 chr4B 77.998 2018 337 61 1908 3880 7218642 7220597 0.000000e+00 1168.0
24 TraesCS4A01G302500 chr4B 77.866 2015 343 56 1908 3880 7264259 7266212 0.000000e+00 1155.0
25 TraesCS4A01G302500 chr4B 88.844 744 36 23 835 1545 7381436 7382165 0.000000e+00 870.0
26 TraesCS4A01G302500 chr4B 83.127 806 89 19 740 1520 7170361 7171144 0.000000e+00 691.0
27 TraesCS4A01G302500 chr4B 83.147 807 87 23 740 1520 7217320 7218103 0.000000e+00 691.0
28 TraesCS4A01G302500 chr4B 83.127 806 89 19 740 1520 7308427 7309210 0.000000e+00 691.0
29 TraesCS4A01G302500 chr4B 82.652 807 91 25 740 1520 7262936 7263719 0.000000e+00 669.0
30 TraesCS4A01G302500 chr4B 81.774 823 99 20 722 1520 7353332 7354127 3.740000e-180 641.0
31 TraesCS4A01G302500 chr4B 87.588 427 37 6 378 789 7381019 7381444 8.630000e-132 481.0
32 TraesCS4A01G302500 chr4B 85.398 226 31 2 1683 1908 7469754 7469977 2.670000e-57 233.0
33 TraesCS4A01G302500 chr4B 80.528 303 29 16 676 974 7420342 7420618 5.810000e-49 206.0
34 TraesCS4A01G302500 chr4B 97.143 35 1 0 1560 1594 7382223 7382257 4.790000e-05 60.2
35 TraesCS4A01G302500 chr1B 88.612 1405 143 13 2512 3907 46554010 46552614 0.000000e+00 1692.0
36 TraesCS4A01G302500 chr7B 96.834 379 12 0 1 379 729408567 729408945 6.260000e-178 634.0
37 TraesCS4A01G302500 chr7B 96.570 379 13 0 1 379 707648268 707647890 2.910000e-176 628.0
38 TraesCS4A01G302500 chr6B 96.817 377 12 0 1 377 34860273 34859897 8.090000e-177 630.0
39 TraesCS4A01G302500 chr6A 96.817 377 12 0 1 377 9572342 9571966 8.090000e-177 630.0
40 TraesCS4A01G302500 chr6A 83.420 386 35 16 740 1107 593027233 593026859 9.190000e-87 331.0
41 TraesCS4A01G302500 chr3B 96.825 378 11 1 1 377 739840267 739840644 8.090000e-177 630.0
42 TraesCS4A01G302500 chr2A 96.817 377 12 0 1 377 22041202 22040826 8.090000e-177 630.0
43 TraesCS4A01G302500 chr5B 96.561 378 13 0 1 378 549396745 549396368 1.050000e-175 627.0
44 TraesCS4A01G302500 chrUn 81.615 805 89 22 740 1518 360633182 360632411 2.930000e-171 612.0
45 TraesCS4A01G302500 chrUn 85.536 401 46 7 1123 1520 216675825 216675434 4.130000e-110 409.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G302500 chr4A 598806712 598811145 4433 True 8189.000000 8189 100.0000 1 4434 1 chr4A.!!$R2 4433
1 TraesCS4A01G302500 chr4A 599125276 599126057 781 True 684.000000 684 83.1280 740 1520 1 chr4A.!!$R7 780
2 TraesCS4A01G302500 chr4A 599247315 599248097 782 True 669.000000 669 82.7590 740 1520 1 chr4A.!!$R11 780
3 TraesCS4A01G302500 chr4A 599158237 599159018 781 True 667.000000 667 82.7800 740 1520 1 chr4A.!!$R9 780
4 TraesCS4A01G302500 chr4A 599084069 599084843 774 True 628.000000 628 81.8860 740 1520 1 chr4A.!!$R5 780
5 TraesCS4A01G302500 chr4A 599101794 599102566 772 True 614.000000 614 81.6150 740 1518 1 chr4A.!!$R6 778
6 TraesCS4A01G302500 chr4A 599146014 599146785 771 True 606.000000 606 81.4910 740 1518 1 chr4A.!!$R8 778
7 TraesCS4A01G302500 chr4A 598909838 598910483 645 True 390.000000 390 78.2800 828 1497 1 chr4A.!!$R3 669
8 TraesCS4A01G302500 chr4A 598960184 598960854 670 True 377.000000 377 77.5740 828 1518 1 chr4A.!!$R4 690
9 TraesCS4A01G302500 chr4D 4463882 4467926 4044 False 1834.333333 4477 88.0990 378 4433 3 chr4D.!!$F3 4055
10 TraesCS4A01G302500 chr4D 4416883 4420171 3288 False 957.000000 1230 80.6315 740 3914 2 chr4D.!!$F2 3174
11 TraesCS4A01G302500 chr4D 4458750 4459514 764 False 608.000000 608 81.3370 740 1520 1 chr4D.!!$F1 780
12 TraesCS4A01G302500 chr4B 7381019 7385068 4049 False 1350.550000 3991 91.4815 378 4433 4 chr4B.!!$F8 4055
13 TraesCS4A01G302500 chr4B 7170361 7173636 3275 False 942.500000 1194 80.6650 740 3880 2 chr4B.!!$F3 3140
14 TraesCS4A01G302500 chr4B 7308427 7311702 3275 False 934.000000 1177 80.6010 740 3880 2 chr4B.!!$F6 3140
15 TraesCS4A01G302500 chr4B 7353332 7356646 3314 False 933.000000 1225 80.0365 722 3914 2 chr4B.!!$F7 3192
16 TraesCS4A01G302500 chr4B 7217320 7220597 3277 False 929.500000 1168 80.5725 740 3880 2 chr4B.!!$F4 3140
17 TraesCS4A01G302500 chr4B 7262936 7266212 3276 False 912.000000 1155 80.2590 740 3880 2 chr4B.!!$F5 3140
18 TraesCS4A01G302500 chr1B 46552614 46554010 1396 True 1692.000000 1692 88.6120 2512 3907 1 chr1B.!!$R1 1395
19 TraesCS4A01G302500 chrUn 360632411 360633182 771 True 612.000000 612 81.6150 740 1518 1 chrUn.!!$R2 778


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
345 346 0.034863 ACGCGGTAACCATGGGAAAT 60.035 50.000 18.09 1.59 0.0 2.17 F
1087 1161 0.041982 ACTCCCCTCCTCTTCAGTCC 59.958 60.000 0.00 0.00 0.0 3.85 F
1491 1590 2.175202 TCTCTCTCTTCCACCAGCTTC 58.825 52.381 0.00 0.00 0.0 3.86 F
2077 2390 0.249699 CAGCAGGGTGTGTACGTCAA 60.250 55.000 0.00 0.00 0.0 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1783 2041 0.108585 ATATGACGGCCGCCAGAAAT 59.891 50.000 28.58 13.0 0.00 2.17 R
2057 2363 1.366366 GACGTACACACCCTGCTGT 59.634 57.895 0.00 0.0 0.00 4.40 R
2875 3222 3.511146 ACACAAGGCACCTGAAATAATGG 59.489 43.478 0.00 0.0 0.00 3.16 R
3963 4331 0.757188 TTTGTGCCAACCCACGGATT 60.757 50.000 0.00 0.0 38.55 3.01 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.418047 AGGTTTTGGTTACCGAATGAGG 58.582 45.455 4.72 0.00 40.69 3.86
22 23 2.094906 GGTTTTGGTTACCGAATGAGGC 60.095 50.000 4.72 0.00 33.69 4.70
23 24 2.554893 GTTTTGGTTACCGAATGAGGCA 59.445 45.455 4.72 0.00 33.69 4.75
24 25 2.570415 TTGGTTACCGAATGAGGCAA 57.430 45.000 0.00 0.00 33.69 4.52
25 26 2.799126 TGGTTACCGAATGAGGCAAT 57.201 45.000 0.00 0.00 33.69 3.56
26 27 3.080300 TGGTTACCGAATGAGGCAATT 57.920 42.857 0.00 0.00 33.69 2.32
27 28 3.426615 TGGTTACCGAATGAGGCAATTT 58.573 40.909 0.00 0.00 33.69 1.82
28 29 3.829601 TGGTTACCGAATGAGGCAATTTT 59.170 39.130 0.00 0.00 33.69 1.82
29 30 5.010933 TGGTTACCGAATGAGGCAATTTTA 58.989 37.500 0.00 0.00 33.69 1.52
30 31 5.106078 TGGTTACCGAATGAGGCAATTTTAC 60.106 40.000 0.00 0.00 33.69 2.01
31 32 5.337554 GTTACCGAATGAGGCAATTTTACC 58.662 41.667 0.00 0.00 33.69 2.85
32 33 2.422127 ACCGAATGAGGCAATTTTACCG 59.578 45.455 0.00 0.00 33.69 4.02
33 34 2.680841 CCGAATGAGGCAATTTTACCGA 59.319 45.455 0.00 0.00 0.00 4.69
34 35 3.242739 CCGAATGAGGCAATTTTACCGAG 60.243 47.826 0.00 0.00 0.00 4.63
35 36 3.242739 CGAATGAGGCAATTTTACCGAGG 60.243 47.826 0.00 0.00 0.00 4.63
36 37 3.644966 ATGAGGCAATTTTACCGAGGA 57.355 42.857 0.00 0.00 0.00 3.71
37 38 2.985896 TGAGGCAATTTTACCGAGGAG 58.014 47.619 0.00 0.00 0.00 3.69
39 40 1.913419 AGGCAATTTTACCGAGGAGGA 59.087 47.619 0.00 0.00 45.00 3.71
40 41 2.014857 GGCAATTTTACCGAGGAGGAC 58.985 52.381 0.00 0.00 45.00 3.85
41 42 1.664151 GCAATTTTACCGAGGAGGACG 59.336 52.381 0.00 0.00 45.00 4.79
47 48 4.023137 CCGAGGAGGACGGGTAAA 57.977 61.111 0.00 0.00 45.65 2.01
48 49 2.512973 CCGAGGAGGACGGGTAAAT 58.487 57.895 0.00 0.00 45.65 1.40
49 50 0.104304 CCGAGGAGGACGGGTAAATG 59.896 60.000 0.00 0.00 45.65 2.32
50 51 0.822164 CGAGGAGGACGGGTAAATGT 59.178 55.000 0.00 0.00 0.00 2.71
51 52 1.470979 CGAGGAGGACGGGTAAATGTG 60.471 57.143 0.00 0.00 0.00 3.21
52 53 0.909623 AGGAGGACGGGTAAATGTGG 59.090 55.000 0.00 0.00 0.00 4.17
53 54 0.616891 GGAGGACGGGTAAATGTGGT 59.383 55.000 0.00 0.00 0.00 4.16
54 55 1.003928 GGAGGACGGGTAAATGTGGTT 59.996 52.381 0.00 0.00 0.00 3.67
55 56 2.236893 GGAGGACGGGTAAATGTGGTTA 59.763 50.000 0.00 0.00 0.00 2.85
56 57 3.264947 GAGGACGGGTAAATGTGGTTAC 58.735 50.000 0.00 0.00 33.91 2.50
80 81 3.508744 GGTTACCGACAAATACCGAGA 57.491 47.619 0.00 0.00 0.00 4.04
81 82 3.848726 GGTTACCGACAAATACCGAGAA 58.151 45.455 0.00 0.00 0.00 2.87
82 83 4.244862 GGTTACCGACAAATACCGAGAAA 58.755 43.478 0.00 0.00 0.00 2.52
83 84 4.872124 GGTTACCGACAAATACCGAGAAAT 59.128 41.667 0.00 0.00 0.00 2.17
84 85 6.042143 GGTTACCGACAAATACCGAGAAATA 58.958 40.000 0.00 0.00 0.00 1.40
85 86 6.019559 GGTTACCGACAAATACCGAGAAATAC 60.020 42.308 0.00 0.00 0.00 1.89
86 87 4.436332 ACCGACAAATACCGAGAAATACC 58.564 43.478 0.00 0.00 0.00 2.73
87 88 3.488310 CCGACAAATACCGAGAAATACCG 59.512 47.826 0.00 0.00 0.00 4.02
88 89 4.353737 CGACAAATACCGAGAAATACCGA 58.646 43.478 0.00 0.00 0.00 4.69
89 90 4.440103 CGACAAATACCGAGAAATACCGAG 59.560 45.833 0.00 0.00 0.00 4.63
90 91 5.585390 GACAAATACCGAGAAATACCGAGA 58.415 41.667 0.00 0.00 0.00 4.04
91 92 5.969423 ACAAATACCGAGAAATACCGAGAA 58.031 37.500 0.00 0.00 0.00 2.87
92 93 6.579865 ACAAATACCGAGAAATACCGAGAAT 58.420 36.000 0.00 0.00 0.00 2.40
93 94 7.719483 ACAAATACCGAGAAATACCGAGAATA 58.281 34.615 0.00 0.00 0.00 1.75
94 95 8.365647 ACAAATACCGAGAAATACCGAGAATAT 58.634 33.333 0.00 0.00 0.00 1.28
95 96 9.204570 CAAATACCGAGAAATACCGAGAATATT 57.795 33.333 0.00 0.00 0.00 1.28
96 97 9.774413 AAATACCGAGAAATACCGAGAATATTT 57.226 29.630 0.00 0.00 35.43 1.40
97 98 8.983307 ATACCGAGAAATACCGAGAATATTTC 57.017 34.615 8.71 8.71 44.27 2.17
98 99 5.919141 ACCGAGAAATACCGAGAATATTTCG 59.081 40.000 10.33 10.96 46.64 3.46
99 100 6.147581 CCGAGAAATACCGAGAATATTTCGA 58.852 40.000 16.51 0.00 46.64 3.71
100 101 6.305877 CCGAGAAATACCGAGAATATTTCGAG 59.694 42.308 16.51 11.24 46.64 4.04
101 102 6.183359 CGAGAAATACCGAGAATATTTCGAGC 60.183 42.308 16.51 5.50 46.64 5.03
102 103 5.629849 AGAAATACCGAGAATATTTCGAGCG 59.370 40.000 16.51 5.82 46.64 5.03
103 104 4.761235 ATACCGAGAATATTTCGAGCGA 57.239 40.909 16.51 0.00 40.36 4.93
104 105 3.431922 ACCGAGAATATTTCGAGCGAA 57.568 42.857 16.51 0.55 40.36 4.70
105 106 3.978687 ACCGAGAATATTTCGAGCGAAT 58.021 40.909 16.51 0.37 40.36 3.34
106 107 4.369182 ACCGAGAATATTTCGAGCGAATT 58.631 39.130 16.51 5.78 40.36 2.17
107 108 4.809426 ACCGAGAATATTTCGAGCGAATTT 59.191 37.500 16.51 1.59 40.36 1.82
108 109 5.293569 ACCGAGAATATTTCGAGCGAATTTT 59.706 36.000 16.51 1.26 40.36 1.82
109 110 6.477688 ACCGAGAATATTTCGAGCGAATTTTA 59.522 34.615 16.51 0.49 40.36 1.52
110 111 7.170998 ACCGAGAATATTTCGAGCGAATTTTAT 59.829 33.333 16.51 0.00 40.36 1.40
111 112 8.644619 CCGAGAATATTTCGAGCGAATTTTATA 58.355 33.333 16.51 2.20 40.36 0.98
112 113 9.663491 CGAGAATATTTCGAGCGAATTTTATAG 57.337 33.333 6.12 0.00 40.36 1.31
120 121 9.834628 TTTCGAGCGAATTTTATAGTTGAATTT 57.165 25.926 6.12 0.00 33.79 1.82
121 122 9.834628 TTCGAGCGAATTTTATAGTTGAATTTT 57.165 25.926 0.55 0.00 0.00 1.82
122 123 9.272901 TCGAGCGAATTTTATAGTTGAATTTTG 57.727 29.630 0.00 0.00 0.00 2.44
123 124 9.272901 CGAGCGAATTTTATAGTTGAATTTTGA 57.727 29.630 0.00 0.00 0.00 2.69
145 146 9.958234 TTTGAATTCAAATAAGTGAATGAACGA 57.042 25.926 26.01 1.80 45.42 3.85
146 147 9.958234 TTGAATTCAAATAAGTGAATGAACGAA 57.042 25.926 18.45 0.00 45.42 3.85
157 158 7.447374 AGTGAATGAACGAATATTCAAACCA 57.553 32.000 15.57 7.57 42.86 3.67
158 159 7.530010 AGTGAATGAACGAATATTCAAACCAG 58.470 34.615 15.57 0.72 42.86 4.00
159 160 6.747280 GTGAATGAACGAATATTCAAACCAGG 59.253 38.462 15.57 0.03 42.86 4.45
160 161 5.835113 ATGAACGAATATTCAAACCAGGG 57.165 39.130 15.57 0.00 41.78 4.45
161 162 4.912586 TGAACGAATATTCAAACCAGGGA 58.087 39.130 15.57 0.00 35.65 4.20
162 163 4.698304 TGAACGAATATTCAAACCAGGGAC 59.302 41.667 15.57 0.00 35.65 4.46
163 164 3.617284 ACGAATATTCAAACCAGGGACC 58.383 45.455 15.57 0.00 0.00 4.46
164 165 3.265995 ACGAATATTCAAACCAGGGACCT 59.734 43.478 15.57 0.00 0.00 3.85
165 166 3.877508 CGAATATTCAAACCAGGGACCTC 59.122 47.826 15.57 0.00 0.00 3.85
166 167 4.384208 CGAATATTCAAACCAGGGACCTCT 60.384 45.833 15.57 0.00 0.00 3.69
167 168 4.779993 ATATTCAAACCAGGGACCTCTC 57.220 45.455 0.00 0.00 0.00 3.20
168 169 1.814429 TTCAAACCAGGGACCTCTCA 58.186 50.000 0.00 0.00 0.00 3.27
169 170 1.814429 TCAAACCAGGGACCTCTCAA 58.186 50.000 0.00 0.00 0.00 3.02
170 171 2.131854 TCAAACCAGGGACCTCTCAAA 58.868 47.619 0.00 0.00 0.00 2.69
171 172 2.512056 TCAAACCAGGGACCTCTCAAAA 59.488 45.455 0.00 0.00 0.00 2.44
172 173 2.623416 CAAACCAGGGACCTCTCAAAAC 59.377 50.000 0.00 0.00 0.00 2.43
173 174 1.518367 ACCAGGGACCTCTCAAAACA 58.482 50.000 0.00 0.00 0.00 2.83
174 175 1.421646 ACCAGGGACCTCTCAAAACAG 59.578 52.381 0.00 0.00 0.00 3.16
175 176 1.271597 CCAGGGACCTCTCAAAACAGG 60.272 57.143 0.00 0.00 35.69 4.00
176 177 1.699634 CAGGGACCTCTCAAAACAGGA 59.300 52.381 0.00 0.00 33.52 3.86
177 178 2.106511 CAGGGACCTCTCAAAACAGGAA 59.893 50.000 0.00 0.00 33.52 3.36
178 179 2.106684 AGGGACCTCTCAAAACAGGAAC 59.893 50.000 0.00 0.00 33.52 3.62
179 180 2.106684 GGGACCTCTCAAAACAGGAACT 59.893 50.000 0.00 0.00 43.88 3.01
180 181 3.326880 GGGACCTCTCAAAACAGGAACTA 59.673 47.826 0.00 0.00 36.02 2.24
181 182 4.563786 GGGACCTCTCAAAACAGGAACTAG 60.564 50.000 0.00 0.00 36.02 2.57
182 183 4.563786 GGACCTCTCAAAACAGGAACTAGG 60.564 50.000 0.00 0.00 36.02 3.02
183 184 3.974642 ACCTCTCAAAACAGGAACTAGGT 59.025 43.478 0.00 0.00 36.02 3.08
184 185 4.412528 ACCTCTCAAAACAGGAACTAGGTT 59.587 41.667 0.00 0.00 36.02 3.50
185 186 4.757149 CCTCTCAAAACAGGAACTAGGTTG 59.243 45.833 0.00 0.00 36.02 3.77
186 187 4.134563 TCTCAAAACAGGAACTAGGTTGC 58.865 43.478 0.00 0.00 36.02 4.17
187 188 4.137543 CTCAAAACAGGAACTAGGTTGCT 58.862 43.478 0.00 0.00 44.62 3.91
188 189 5.071250 TCTCAAAACAGGAACTAGGTTGCTA 59.929 40.000 4.28 0.00 42.02 3.49
189 190 5.061179 TCAAAACAGGAACTAGGTTGCTAC 58.939 41.667 4.28 0.00 42.02 3.58
190 191 3.314541 AACAGGAACTAGGTTGCTACG 57.685 47.619 4.28 0.00 42.02 3.51
191 192 1.549170 ACAGGAACTAGGTTGCTACGG 59.451 52.381 4.28 0.00 42.02 4.02
192 193 1.822990 CAGGAACTAGGTTGCTACGGA 59.177 52.381 4.28 0.00 42.02 4.69
193 194 1.823610 AGGAACTAGGTTGCTACGGAC 59.176 52.381 2.76 0.00 42.11 4.79
194 195 1.547372 GGAACTAGGTTGCTACGGACA 59.453 52.381 0.00 0.00 31.28 4.02
195 196 2.167900 GGAACTAGGTTGCTACGGACAT 59.832 50.000 0.00 0.00 31.28 3.06
196 197 2.961526 ACTAGGTTGCTACGGACATG 57.038 50.000 0.00 0.00 0.00 3.21
197 198 1.134788 ACTAGGTTGCTACGGACATGC 60.135 52.381 0.00 0.00 0.00 4.06
198 199 0.177141 TAGGTTGCTACGGACATGCC 59.823 55.000 0.00 0.00 0.00 4.40
199 200 1.376683 GGTTGCTACGGACATGCCA 60.377 57.895 0.00 0.00 35.94 4.92
200 201 1.369091 GGTTGCTACGGACATGCCAG 61.369 60.000 0.00 0.00 35.94 4.85
201 202 0.391130 GTTGCTACGGACATGCCAGA 60.391 55.000 0.00 0.00 35.94 3.86
202 203 0.323302 TTGCTACGGACATGCCAGAA 59.677 50.000 0.00 0.00 35.94 3.02
203 204 0.391130 TGCTACGGACATGCCAGAAC 60.391 55.000 0.00 0.00 35.94 3.01
204 205 1.090052 GCTACGGACATGCCAGAACC 61.090 60.000 0.00 0.00 35.94 3.62
205 206 0.249120 CTACGGACATGCCAGAACCA 59.751 55.000 0.00 0.00 35.94 3.67
206 207 0.687920 TACGGACATGCCAGAACCAA 59.312 50.000 0.00 0.00 35.94 3.67
207 208 0.889186 ACGGACATGCCAGAACCAAC 60.889 55.000 0.00 0.00 35.94 3.77
208 209 0.606401 CGGACATGCCAGAACCAACT 60.606 55.000 0.00 0.00 35.94 3.16
209 210 1.168714 GGACATGCCAGAACCAACTC 58.831 55.000 0.00 0.00 36.34 3.01
210 211 1.271597 GGACATGCCAGAACCAACTCT 60.272 52.381 0.00 0.00 36.34 3.24
211 212 2.027192 GGACATGCCAGAACCAACTCTA 60.027 50.000 0.00 0.00 36.34 2.43
212 213 3.559171 GGACATGCCAGAACCAACTCTAA 60.559 47.826 0.00 0.00 36.34 2.10
213 214 4.265073 GACATGCCAGAACCAACTCTAAT 58.735 43.478 0.00 0.00 0.00 1.73
214 215 4.012374 ACATGCCAGAACCAACTCTAATG 58.988 43.478 0.00 0.00 0.00 1.90
215 216 3.071874 TGCCAGAACCAACTCTAATGG 57.928 47.619 0.00 0.00 43.84 3.16
216 217 1.745653 GCCAGAACCAACTCTAATGGC 59.254 52.381 0.00 0.00 44.27 4.40
217 218 3.071874 CCAGAACCAACTCTAATGGCA 57.928 47.619 0.00 0.00 41.89 4.92
218 219 3.624777 CCAGAACCAACTCTAATGGCAT 58.375 45.455 0.00 0.00 41.89 4.40
219 220 4.019174 CCAGAACCAACTCTAATGGCATT 58.981 43.478 18.01 18.01 41.89 3.56
220 221 5.192927 CCAGAACCAACTCTAATGGCATTA 58.807 41.667 18.33 18.33 41.89 1.90
221 222 5.652014 CCAGAACCAACTCTAATGGCATTAA 59.348 40.000 19.68 10.57 41.89 1.40
222 223 6.322201 CCAGAACCAACTCTAATGGCATTAAT 59.678 38.462 19.68 6.90 41.89 1.40
223 224 7.147846 CCAGAACCAACTCTAATGGCATTAATT 60.148 37.037 19.68 11.92 41.89 1.40
224 225 8.902806 CAGAACCAACTCTAATGGCATTAATTA 58.097 33.333 19.68 8.48 41.89 1.40
225 226 9.125026 AGAACCAACTCTAATGGCATTAATTAG 57.875 33.333 19.68 17.76 41.89 1.73
226 227 9.120538 GAACCAACTCTAATGGCATTAATTAGA 57.879 33.333 19.68 14.22 41.90 2.10
227 228 9.646522 AACCAACTCTAATGGCATTAATTAGAT 57.353 29.630 19.68 10.07 42.72 1.98
228 229 9.289782 ACCAACTCTAATGGCATTAATTAGATC 57.710 33.333 19.68 0.00 42.72 2.75
229 230 8.446273 CCAACTCTAATGGCATTAATTAGATCG 58.554 37.037 19.68 8.03 42.72 3.69
230 231 8.993121 CAACTCTAATGGCATTAATTAGATCGT 58.007 33.333 19.68 8.57 42.72 3.73
232 233 9.640963 ACTCTAATGGCATTAATTAGATCGTAC 57.359 33.333 19.68 0.00 42.72 3.67
233 234 8.683550 TCTAATGGCATTAATTAGATCGTACG 57.316 34.615 19.68 9.53 40.19 3.67
234 235 8.301720 TCTAATGGCATTAATTAGATCGTACGT 58.698 33.333 19.68 2.33 40.19 3.57
235 236 9.563898 CTAATGGCATTAATTAGATCGTACGTA 57.436 33.333 19.68 2.34 39.12 3.57
236 237 7.807687 ATGGCATTAATTAGATCGTACGTAC 57.192 36.000 15.90 15.90 0.00 3.67
237 238 6.973843 TGGCATTAATTAGATCGTACGTACT 58.026 36.000 22.55 16.77 0.00 2.73
238 239 7.428020 TGGCATTAATTAGATCGTACGTACTT 58.572 34.615 22.55 10.60 0.00 2.24
239 240 7.922278 TGGCATTAATTAGATCGTACGTACTTT 59.078 33.333 22.55 10.24 0.00 2.66
240 241 9.398170 GGCATTAATTAGATCGTACGTACTTTA 57.602 33.333 22.55 9.14 0.00 1.85
250 251 7.848051 AGATCGTACGTACTTTACTGTAAATCG 59.152 37.037 22.55 17.44 0.00 3.34
251 252 7.056002 TCGTACGTACTTTACTGTAAATCGA 57.944 36.000 22.55 17.19 0.00 3.59
252 253 7.173419 TCGTACGTACTTTACTGTAAATCGAG 58.827 38.462 22.55 13.80 0.00 4.04
253 254 6.955963 CGTACGTACTTTACTGTAAATCGAGT 59.044 38.462 22.55 17.31 0.00 4.18
254 255 7.045996 CGTACGTACTTTACTGTAAATCGAGTG 60.046 40.741 22.55 12.98 0.00 3.51
255 256 6.672147 ACGTACTTTACTGTAAATCGAGTGT 58.328 36.000 24.48 16.45 0.00 3.55
256 257 7.141363 ACGTACTTTACTGTAAATCGAGTGTT 58.859 34.615 24.48 10.43 0.00 3.32
257 258 7.649306 ACGTACTTTACTGTAAATCGAGTGTTT 59.351 33.333 24.48 9.99 0.00 2.83
258 259 9.117145 CGTACTTTACTGTAAATCGAGTGTTTA 57.883 33.333 12.95 0.00 0.00 2.01
304 305 3.234979 TTTTTGCTCGGTATGGCGA 57.765 47.368 0.00 0.00 0.00 5.54
305 306 1.745232 TTTTTGCTCGGTATGGCGAT 58.255 45.000 0.00 0.00 0.00 4.58
306 307 1.745232 TTTTGCTCGGTATGGCGATT 58.255 45.000 0.00 0.00 0.00 3.34
307 308 1.745232 TTTGCTCGGTATGGCGATTT 58.255 45.000 0.00 0.00 0.00 2.17
308 309 2.605837 TTGCTCGGTATGGCGATTTA 57.394 45.000 0.00 0.00 0.00 1.40
309 310 1.860676 TGCTCGGTATGGCGATTTAC 58.139 50.000 0.00 0.00 0.00 2.01
310 311 1.145803 GCTCGGTATGGCGATTTACC 58.854 55.000 0.00 0.00 35.52 2.85
314 315 1.792006 GGTATGGCGATTTACCGAGG 58.208 55.000 0.00 0.00 0.00 4.63
315 316 1.607251 GGTATGGCGATTTACCGAGGG 60.607 57.143 0.00 0.00 0.00 4.30
316 317 0.682852 TATGGCGATTTACCGAGGGG 59.317 55.000 0.00 0.00 40.11 4.79
317 318 2.590859 GGCGATTTACCGAGGGGC 60.591 66.667 0.00 0.00 36.48 5.80
318 319 2.965462 GCGATTTACCGAGGGGCG 60.965 66.667 0.00 0.00 36.48 6.13
319 320 2.965462 CGATTTACCGAGGGGCGC 60.965 66.667 0.00 0.00 39.11 6.53
320 321 2.965462 GATTTACCGAGGGGCGCG 60.965 66.667 0.00 0.00 39.11 6.86
327 328 2.965462 CGAGGGGCGCGGAAATAC 60.965 66.667 8.83 0.00 0.00 1.89
328 329 2.965462 GAGGGGCGCGGAAATACG 60.965 66.667 8.83 0.00 0.00 3.06
337 338 3.047752 CGGAAATACGCGGTAACCA 57.952 52.632 12.47 0.00 0.00 3.67
338 339 1.574134 CGGAAATACGCGGTAACCAT 58.426 50.000 12.47 0.00 0.00 3.55
339 340 1.259507 CGGAAATACGCGGTAACCATG 59.740 52.381 12.47 0.00 0.00 3.66
340 341 1.600485 GGAAATACGCGGTAACCATGG 59.400 52.381 11.19 11.19 0.00 3.66
341 342 1.600485 GAAATACGCGGTAACCATGGG 59.400 52.381 18.09 0.00 0.00 4.00
342 343 0.831966 AATACGCGGTAACCATGGGA 59.168 50.000 18.09 0.00 0.00 4.37
343 344 0.831966 ATACGCGGTAACCATGGGAA 59.168 50.000 18.09 0.00 0.00 3.97
344 345 0.612229 TACGCGGTAACCATGGGAAA 59.388 50.000 18.09 0.00 0.00 3.13
345 346 0.034863 ACGCGGTAACCATGGGAAAT 60.035 50.000 18.09 1.59 0.00 2.17
346 347 0.661020 CGCGGTAACCATGGGAAATC 59.339 55.000 18.09 0.00 0.00 2.17
347 348 1.745827 CGCGGTAACCATGGGAAATCT 60.746 52.381 18.09 0.00 0.00 2.40
348 349 2.375146 GCGGTAACCATGGGAAATCTT 58.625 47.619 18.09 2.18 0.00 2.40
349 350 2.099098 GCGGTAACCATGGGAAATCTTG 59.901 50.000 18.09 0.00 0.00 3.02
350 351 3.616219 CGGTAACCATGGGAAATCTTGA 58.384 45.455 18.09 0.00 0.00 3.02
351 352 4.013728 CGGTAACCATGGGAAATCTTGAA 58.986 43.478 18.09 0.00 0.00 2.69
352 353 4.461081 CGGTAACCATGGGAAATCTTGAAA 59.539 41.667 18.09 0.00 0.00 2.69
353 354 5.127031 CGGTAACCATGGGAAATCTTGAAAT 59.873 40.000 18.09 0.00 0.00 2.17
354 355 6.350949 CGGTAACCATGGGAAATCTTGAAATT 60.351 38.462 18.09 0.00 0.00 1.82
355 356 7.394016 GGTAACCATGGGAAATCTTGAAATTT 58.606 34.615 18.09 0.00 0.00 1.82
356 357 7.549134 GGTAACCATGGGAAATCTTGAAATTTC 59.451 37.037 18.09 11.41 42.41 2.17
357 358 6.684897 ACCATGGGAAATCTTGAAATTTCA 57.315 33.333 16.91 16.91 44.09 2.69
358 359 7.077050 ACCATGGGAAATCTTGAAATTTCAA 57.923 32.000 27.39 27.39 44.09 2.69
359 360 6.936335 ACCATGGGAAATCTTGAAATTTCAAC 59.064 34.615 26.01 16.89 44.09 3.18
360 361 7.163441 CCATGGGAAATCTTGAAATTTCAACT 58.837 34.615 26.01 15.23 44.09 3.16
361 362 7.118680 CCATGGGAAATCTTGAAATTTCAACTG 59.881 37.037 26.01 18.47 44.09 3.16
362 363 6.523840 TGGGAAATCTTGAAATTTCAACTGG 58.476 36.000 26.01 17.85 44.09 4.00
363 364 6.099557 TGGGAAATCTTGAAATTTCAACTGGT 59.900 34.615 26.01 13.52 44.09 4.00
364 365 7.288852 TGGGAAATCTTGAAATTTCAACTGGTA 59.711 33.333 26.01 11.88 44.09 3.25
365 366 8.147704 GGGAAATCTTGAAATTTCAACTGGTAA 58.852 33.333 26.01 7.76 44.09 2.85
366 367 8.978539 GGAAATCTTGAAATTTCAACTGGTAAC 58.021 33.333 26.01 14.80 44.09 2.50
367 368 8.887036 AAATCTTGAAATTTCAACTGGTAACC 57.113 30.769 26.01 0.00 41.88 2.85
368 369 7.595819 ATCTTGAAATTTCAACTGGTAACCA 57.404 32.000 26.01 5.74 41.88 3.67
369 370 7.411486 TCTTGAAATTTCAACTGGTAACCAA 57.589 32.000 26.01 5.26 41.88 3.67
370 371 7.841956 TCTTGAAATTTCAACTGGTAACCAAA 58.158 30.769 26.01 5.08 41.88 3.28
371 372 8.314751 TCTTGAAATTTCAACTGGTAACCAAAA 58.685 29.630 26.01 4.67 41.88 2.44
372 373 7.835634 TGAAATTTCAACTGGTAACCAAAAC 57.164 32.000 18.45 0.00 33.55 2.43
373 374 6.819146 TGAAATTTCAACTGGTAACCAAAACC 59.181 34.615 18.45 0.00 34.26 3.27
374 375 6.553953 AATTTCAACTGGTAACCAAAACCT 57.446 33.333 0.00 0.00 37.91 3.50
375 376 6.553953 ATTTCAACTGGTAACCAAAACCTT 57.446 33.333 0.00 0.00 37.91 3.50
376 377 4.993029 TCAACTGGTAACCAAAACCTTG 57.007 40.909 0.00 0.00 37.91 3.61
385 386 1.775385 CCAAAACCTTGGTGTGGACT 58.225 50.000 14.34 0.00 46.25 3.85
387 388 2.621526 CCAAAACCTTGGTGTGGACTAC 59.378 50.000 14.34 0.00 46.25 2.73
393 394 3.454812 ACCTTGGTGTGGACTACCATATC 59.545 47.826 0.00 0.00 46.81 1.63
397 398 5.030147 TTGGTGTGGACTACCATATCTCTT 58.970 41.667 0.00 0.00 46.81 2.85
421 422 3.641046 CCACATATGGGTTGGATTTGGA 58.359 45.455 7.80 0.00 43.04 3.53
425 426 4.170647 ACATATGGGTTGGATTTGGAGGAT 59.829 41.667 7.80 0.00 0.00 3.24
465 466 1.415672 TTTTGGAGAGTCCGCTGGGT 61.416 55.000 0.00 0.00 40.17 4.51
466 467 0.543410 TTTGGAGAGTCCGCTGGGTA 60.543 55.000 0.00 0.00 40.17 3.69
490 491 5.952947 ACCTGCTAGATATCTAAATACGCCT 59.047 40.000 13.41 0.00 0.00 5.52
512 513 5.451520 CCTGGACGTACGAGGAAGAAATAAT 60.452 44.000 24.41 0.00 45.50 1.28
513 514 5.585390 TGGACGTACGAGGAAGAAATAATC 58.415 41.667 24.41 3.61 0.00 1.75
514 515 5.359009 TGGACGTACGAGGAAGAAATAATCT 59.641 40.000 24.41 0.00 41.32 2.40
562 579 9.685276 TTATTTATATGCATTCTATCCCACAGG 57.315 33.333 3.54 0.00 0.00 4.00
588 605 4.441415 CGCTTCGGCATTCTACTAGTAAAG 59.559 45.833 3.76 3.54 41.88 1.85
596 613 7.201530 CGGCATTCTACTAGTAAAGGAAGTTTG 60.202 40.741 3.76 2.07 0.00 2.93
607 624 7.982224 AGTAAAGGAAGTTTGACAGTGTAAAC 58.018 34.615 15.04 15.04 37.12 2.01
623 640 4.448060 GTGTAAACGAAAGCTAGCAGACTT 59.552 41.667 18.83 4.25 0.00 3.01
690 713 2.472909 GCAGAGCCCATACCGCAAC 61.473 63.158 0.00 0.00 0.00 4.17
820 858 2.817258 CCGTTTCCAAGCCAACTAATGA 59.183 45.455 0.00 0.00 0.00 2.57
826 864 2.025887 CCAAGCCAACTAATGACTCCCT 60.026 50.000 0.00 0.00 0.00 4.20
1043 1117 3.987404 GCTCAACGCCCACATCTT 58.013 55.556 0.00 0.00 0.00 2.40
1081 1155 2.285743 GCCCACTCCCCTCCTCTT 60.286 66.667 0.00 0.00 0.00 2.85
1087 1161 0.041982 ACTCCCCTCCTCTTCAGTCC 59.958 60.000 0.00 0.00 0.00 3.85
1166 1252 2.860293 CGTGCGTGGTTGATGTCC 59.140 61.111 0.00 0.00 0.00 4.02
1244 1332 3.130160 GAGCTTGCCCGCCTCTTG 61.130 66.667 0.00 0.00 0.00 3.02
1491 1590 2.175202 TCTCTCTCTTCCACCAGCTTC 58.825 52.381 0.00 0.00 0.00 3.86
1540 1657 4.327357 CGCGATTCAGATCTGTTTGTACTT 59.673 41.667 21.92 0.24 0.00 2.24
1545 1662 4.065088 TCAGATCTGTTTGTACTTGGCAC 58.935 43.478 21.92 0.00 0.00 5.01
1547 1664 4.067896 AGATCTGTTTGTACTTGGCACTG 58.932 43.478 0.00 0.00 0.00 3.66
1548 1665 3.275617 TCTGTTTGTACTTGGCACTGT 57.724 42.857 0.00 0.00 0.00 3.55
1635 1841 6.910433 GTGATGATAAAGTGTTGTCGTTTTGT 59.090 34.615 0.00 0.00 0.00 2.83
1675 1928 9.995003 ATTAGTGATCTTCTATCTTGTTCATCC 57.005 33.333 0.00 0.00 0.00 3.51
1730 1986 6.040616 ACACCGATGTTGTTTTTATTTGGGTA 59.959 34.615 0.00 0.00 34.46 3.69
1799 2057 2.745884 CATTTCTGGCGGCCGTCA 60.746 61.111 33.19 33.19 0.00 4.35
1812 2070 3.887621 GGCCGTCATATAGCCATAGAA 57.112 47.619 0.00 0.00 46.34 2.10
1935 2239 3.704566 AGTGCCATTATTCTAGGTCGACA 59.295 43.478 18.91 0.00 0.00 4.35
1977 2283 7.701539 TTATAAGCATGGCTGGTATTAATGG 57.298 36.000 0.00 0.00 39.62 3.16
2057 2363 5.883115 TGTTGTTTCTATTCAGGTGTGTCAA 59.117 36.000 0.00 0.00 0.00 3.18
2075 2388 0.249741 AACAGCAGGGTGTGTACGTC 60.250 55.000 4.73 0.00 0.00 4.34
2076 2389 1.365999 CAGCAGGGTGTGTACGTCA 59.634 57.895 0.00 0.00 0.00 4.35
2077 2390 0.249699 CAGCAGGGTGTGTACGTCAA 60.250 55.000 0.00 0.00 0.00 3.18
2099 2412 2.198827 TGGGCGTCATTTGAATGTCT 57.801 45.000 3.85 0.00 37.65 3.41
2152 2465 9.906660 TTAGTTGTGTTTCATGTAATGGAATTC 57.093 29.630 0.00 0.00 45.16 2.17
2215 2529 3.126171 TGTCGTTTTGTATACATGCTGGC 59.874 43.478 6.36 0.18 0.00 4.85
2365 2694 9.955208 CAAATATGCTTATGTGTATCAACATGT 57.045 29.630 0.00 0.00 40.93 3.21
2386 2715 9.561069 ACATGTCTCACTGTTTAATAAGTTTCT 57.439 29.630 0.00 0.00 0.00 2.52
2468 2798 2.763273 CGCCTGCATGCATTTCGGA 61.763 57.895 22.97 0.00 0.00 4.55
2479 2809 5.049198 GCATGCATTTCGGAGATTTCTATGA 60.049 40.000 14.21 0.00 35.04 2.15
2668 3003 3.884693 TGCTTTGCTTTCTCACTTCATCA 59.115 39.130 0.00 0.00 0.00 3.07
2710 3048 6.524734 ACTCGGTTCATTATCTCAATATGCA 58.475 36.000 0.00 0.00 0.00 3.96
2713 3051 8.219546 TCGGTTCATTATCTCAATATGCAAAA 57.780 30.769 0.00 0.00 0.00 2.44
2751 3089 4.730966 TGTAATTTGTTGGCCCTTGTCTA 58.269 39.130 0.00 0.00 0.00 2.59
2759 3097 3.695830 TGGCCCTTGTCTACTGTTTAG 57.304 47.619 0.00 0.00 0.00 1.85
2852 3198 7.709613 TCAAGTCAGTTCTGTTAACCTCTTTAC 59.290 37.037 2.48 0.00 0.00 2.01
2871 3218 9.208022 CTCTTTACAATTTGACTGTGTGATCTA 57.792 33.333 2.79 0.00 0.00 1.98
3126 3477 5.130477 TGGAGTACTTTGTTTGAGGTCTCTT 59.870 40.000 0.00 0.00 0.00 2.85
3128 3479 7.016268 TGGAGTACTTTGTTTGAGGTCTCTTAT 59.984 37.037 0.00 0.00 0.00 1.73
3130 3481 9.924650 GAGTACTTTGTTTGAGGTCTCTTATAA 57.075 33.333 0.00 0.00 0.00 0.98
3144 3495 6.311690 GGTCTCTTATAATTTCATCTAGCCGC 59.688 42.308 0.00 0.00 0.00 6.53
3303 3659 5.114764 TGGCTGATTAGTGAAATGATGGA 57.885 39.130 0.00 0.00 0.00 3.41
3337 3693 6.658816 ACCATTATGTGCAATAGACTTGTCAA 59.341 34.615 3.49 0.00 0.00 3.18
3567 3931 3.991773 CGTGAAACCAGACGAGGATTTTA 59.008 43.478 0.00 0.00 37.81 1.52
3571 3935 1.134788 ACCAGACGAGGATTTTAGCGG 60.135 52.381 0.00 0.00 0.00 5.52
3572 3936 0.931005 CAGACGAGGATTTTAGCGGC 59.069 55.000 0.00 0.00 0.00 6.53
3601 3965 5.805728 ACTTTGGTCTCATAACCCTGTAAG 58.194 41.667 0.00 0.00 38.65 2.34
3623 3987 3.691498 CGAAACTTGTTGTCCTTTGTCC 58.309 45.455 0.00 0.00 0.00 4.02
3624 3988 3.691498 GAAACTTGTTGTCCTTTGTCCG 58.309 45.455 0.00 0.00 0.00 4.79
3765 4133 4.955811 TGTGTTGGCTTCTCTCTCTAAA 57.044 40.909 0.00 0.00 0.00 1.85
3788 4156 0.234884 GTCGTGTTGTTGGCTAGTGC 59.765 55.000 0.00 0.00 38.76 4.40
3856 4224 7.509546 TCTCTTTTTGGTCTGTAATCTTCAGT 58.490 34.615 0.00 0.00 34.86 3.41
3931 4299 6.103997 CGGCAAAGTAGAGGTGATAGTTTTA 58.896 40.000 0.00 0.00 0.00 1.52
3933 4301 7.104290 GGCAAAGTAGAGGTGATAGTTTTACT 58.896 38.462 0.00 0.00 0.00 2.24
3938 4306 3.118738 AGAGGTGATAGTTTTACTGGGCG 60.119 47.826 0.00 0.00 0.00 6.13
3959 4327 1.077930 ATGCAGGCATGACGAAGCT 60.078 52.632 0.62 0.00 35.03 3.74
3963 4331 2.747460 GGCATGACGAAGCTGGCA 60.747 61.111 0.00 0.00 35.68 4.92
4113 4481 3.196469 TCCAAATAGTCAGCTCTCCACTG 59.804 47.826 0.00 0.00 36.44 3.66
4301 4669 9.190317 AGAACTTTCATAAATGATAACCCCTTC 57.810 33.333 0.00 0.00 36.56 3.46
4309 4677 8.846211 CATAAATGATAACCCCTTCGTTACAAT 58.154 33.333 0.00 0.00 31.25 2.71
4340 4708 4.324402 GCAAGCATCACAATAAGAAAACCG 59.676 41.667 0.00 0.00 0.00 4.44
4379 4747 5.707298 AGTGTGATTTCCAACACATCTTAGG 59.293 40.000 8.48 0.00 46.20 2.69
4424 4794 9.238368 TGCAAAATATATAGGTATAAGCCAACC 57.762 33.333 0.00 0.00 35.91 3.77
4433 4803 6.530019 AGGTATAAGCCAACCTGATTTTTG 57.470 37.500 0.00 0.00 44.53 2.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.418047 CCTCATTCGGTAACCAAAACCT 58.582 45.455 0.00 0.00 34.66 3.50
1 2 2.094906 GCCTCATTCGGTAACCAAAACC 60.095 50.000 0.00 0.00 0.00 3.27
2 3 2.554893 TGCCTCATTCGGTAACCAAAAC 59.445 45.455 0.00 0.00 0.00 2.43
3 4 2.865079 TGCCTCATTCGGTAACCAAAA 58.135 42.857 0.00 0.00 0.00 2.44
4 5 2.570415 TGCCTCATTCGGTAACCAAA 57.430 45.000 0.00 0.00 0.00 3.28
5 6 2.570415 TTGCCTCATTCGGTAACCAA 57.430 45.000 0.00 0.00 0.00 3.67
6 7 2.799126 ATTGCCTCATTCGGTAACCA 57.201 45.000 0.00 0.00 31.36 3.67
7 8 4.450082 AAAATTGCCTCATTCGGTAACC 57.550 40.909 0.00 0.00 31.36 2.85
8 9 5.337554 GGTAAAATTGCCTCATTCGGTAAC 58.662 41.667 0.00 0.00 31.36 2.50
9 10 4.095185 CGGTAAAATTGCCTCATTCGGTAA 59.905 41.667 0.00 0.00 33.14 2.85
10 11 3.623960 CGGTAAAATTGCCTCATTCGGTA 59.376 43.478 0.00 0.00 0.00 4.02
11 12 2.422127 CGGTAAAATTGCCTCATTCGGT 59.578 45.455 0.00 0.00 0.00 4.69
12 13 2.680841 TCGGTAAAATTGCCTCATTCGG 59.319 45.455 0.00 0.00 0.00 4.30
13 14 3.242739 CCTCGGTAAAATTGCCTCATTCG 60.243 47.826 0.00 0.00 0.00 3.34
14 15 3.945285 TCCTCGGTAAAATTGCCTCATTC 59.055 43.478 0.00 0.00 0.00 2.67
15 16 3.947834 CTCCTCGGTAAAATTGCCTCATT 59.052 43.478 0.00 0.00 0.00 2.57
16 17 3.545703 CTCCTCGGTAAAATTGCCTCAT 58.454 45.455 0.00 0.00 0.00 2.90
17 18 2.355716 CCTCCTCGGTAAAATTGCCTCA 60.356 50.000 0.00 0.00 0.00 3.86
18 19 2.093128 TCCTCCTCGGTAAAATTGCCTC 60.093 50.000 0.00 0.00 0.00 4.70
19 20 1.913419 TCCTCCTCGGTAAAATTGCCT 59.087 47.619 0.00 0.00 0.00 4.75
20 21 2.014857 GTCCTCCTCGGTAAAATTGCC 58.985 52.381 0.00 0.00 0.00 4.52
21 22 1.664151 CGTCCTCCTCGGTAAAATTGC 59.336 52.381 0.00 0.00 0.00 3.56
22 23 2.277084 CCGTCCTCCTCGGTAAAATTG 58.723 52.381 0.00 0.00 42.62 2.32
23 24 1.208776 CCCGTCCTCCTCGGTAAAATT 59.791 52.381 3.78 0.00 45.63 1.82
24 25 0.828677 CCCGTCCTCCTCGGTAAAAT 59.171 55.000 3.78 0.00 45.63 1.82
25 26 0.542702 ACCCGTCCTCCTCGGTAAAA 60.543 55.000 3.78 0.00 45.63 1.52
26 27 0.331278 TACCCGTCCTCCTCGGTAAA 59.669 55.000 3.78 0.00 45.63 2.01
27 28 0.331278 TTACCCGTCCTCCTCGGTAA 59.669 55.000 3.78 0.00 45.63 2.85
28 29 0.331278 TTTACCCGTCCTCCTCGGTA 59.669 55.000 3.78 0.00 45.63 4.02
29 30 0.325016 ATTTACCCGTCCTCCTCGGT 60.325 55.000 3.78 0.00 45.63 4.69
30 31 0.104304 CATTTACCCGTCCTCCTCGG 59.896 60.000 0.00 0.00 46.49 4.63
31 32 0.822164 ACATTTACCCGTCCTCCTCG 59.178 55.000 0.00 0.00 0.00 4.63
32 33 1.134491 CCACATTTACCCGTCCTCCTC 60.134 57.143 0.00 0.00 0.00 3.71
33 34 0.909623 CCACATTTACCCGTCCTCCT 59.090 55.000 0.00 0.00 0.00 3.69
34 35 0.616891 ACCACATTTACCCGTCCTCC 59.383 55.000 0.00 0.00 0.00 4.30
35 36 2.484742 AACCACATTTACCCGTCCTC 57.515 50.000 0.00 0.00 0.00 3.71
36 37 2.026915 GGTAACCACATTTACCCGTCCT 60.027 50.000 1.21 0.00 43.73 3.85
37 38 2.358957 GGTAACCACATTTACCCGTCC 58.641 52.381 1.21 0.00 43.73 4.79
60 61 3.508744 TCTCGGTATTTGTCGGTAACC 57.491 47.619 0.00 0.00 0.00 2.85
61 62 6.019559 GGTATTTCTCGGTATTTGTCGGTAAC 60.020 42.308 0.00 0.00 0.00 2.50
62 63 6.042143 GGTATTTCTCGGTATTTGTCGGTAA 58.958 40.000 0.00 0.00 0.00 2.85
63 64 5.591099 GGTATTTCTCGGTATTTGTCGGTA 58.409 41.667 0.00 0.00 0.00 4.02
64 65 4.436332 GGTATTTCTCGGTATTTGTCGGT 58.564 43.478 0.00 0.00 0.00 4.69
65 66 3.488310 CGGTATTTCTCGGTATTTGTCGG 59.512 47.826 0.00 0.00 0.00 4.79
66 67 4.353737 TCGGTATTTCTCGGTATTTGTCG 58.646 43.478 0.00 0.00 0.00 4.35
67 68 5.585390 TCTCGGTATTTCTCGGTATTTGTC 58.415 41.667 0.00 0.00 0.00 3.18
68 69 5.587388 TCTCGGTATTTCTCGGTATTTGT 57.413 39.130 0.00 0.00 0.00 2.83
69 70 8.758633 ATATTCTCGGTATTTCTCGGTATTTG 57.241 34.615 0.00 0.00 0.00 2.32
70 71 9.774413 AAATATTCTCGGTATTTCTCGGTATTT 57.226 29.630 0.00 0.00 28.29 1.40
71 72 9.420551 GAAATATTCTCGGTATTTCTCGGTATT 57.579 33.333 9.99 0.00 41.76 1.89
72 73 7.754027 CGAAATATTCTCGGTATTTCTCGGTAT 59.246 37.037 13.53 0.00 42.35 2.73
73 74 7.041167 TCGAAATATTCTCGGTATTTCTCGGTA 60.041 37.037 15.30 0.00 42.35 4.02
74 75 5.919141 CGAAATATTCTCGGTATTTCTCGGT 59.081 40.000 13.53 0.00 42.35 4.69
75 76 6.147581 TCGAAATATTCTCGGTATTTCTCGG 58.852 40.000 15.30 3.07 42.35 4.63
76 77 6.183359 GCTCGAAATATTCTCGGTATTTCTCG 60.183 42.308 15.30 6.03 42.35 4.04
77 78 6.183359 CGCTCGAAATATTCTCGGTATTTCTC 60.183 42.308 15.30 5.41 42.35 2.87
78 79 5.629849 CGCTCGAAATATTCTCGGTATTTCT 59.370 40.000 15.30 0.00 42.35 2.52
79 80 5.628193 TCGCTCGAAATATTCTCGGTATTTC 59.372 40.000 15.30 8.01 41.66 2.17
80 81 5.526115 TCGCTCGAAATATTCTCGGTATTT 58.474 37.500 15.30 0.00 36.93 1.40
81 82 5.117355 TCGCTCGAAATATTCTCGGTATT 57.883 39.130 15.30 0.00 36.93 1.89
82 83 4.761235 TCGCTCGAAATATTCTCGGTAT 57.239 40.909 15.30 0.00 36.93 2.73
83 84 4.556942 TTCGCTCGAAATATTCTCGGTA 57.443 40.909 15.30 2.71 36.93 4.02
84 85 3.431922 TTCGCTCGAAATATTCTCGGT 57.568 42.857 15.30 0.00 36.93 4.69
85 86 4.974103 AATTCGCTCGAAATATTCTCGG 57.026 40.909 8.84 9.94 37.69 4.63
86 87 9.663491 CTATAAAATTCGCTCGAAATATTCTCG 57.337 33.333 8.84 11.44 37.69 4.04
94 95 9.834628 AAATTCAACTATAAAATTCGCTCGAAA 57.165 25.926 8.84 0.00 37.69 3.46
95 96 9.834628 AAAATTCAACTATAAAATTCGCTCGAA 57.165 25.926 7.19 7.19 38.59 3.71
96 97 9.272901 CAAAATTCAACTATAAAATTCGCTCGA 57.727 29.630 0.00 0.00 0.00 4.04
97 98 9.272901 TCAAAATTCAACTATAAAATTCGCTCG 57.727 29.630 0.00 0.00 0.00 5.03
120 121 9.958234 TTCGTTCATTCACTTATTTGAATTCAA 57.042 25.926 16.91 16.91 42.45 2.69
131 132 9.004717 TGGTTTGAATATTCGTTCATTCACTTA 57.995 29.630 10.80 0.00 40.06 2.24
132 133 7.881142 TGGTTTGAATATTCGTTCATTCACTT 58.119 30.769 10.80 0.00 40.06 3.16
133 134 7.362056 CCTGGTTTGAATATTCGTTCATTCACT 60.362 37.037 10.80 0.00 40.06 3.41
134 135 6.747280 CCTGGTTTGAATATTCGTTCATTCAC 59.253 38.462 10.80 0.00 40.06 3.18
135 136 6.127758 CCCTGGTTTGAATATTCGTTCATTCA 60.128 38.462 10.80 4.85 38.93 2.57
136 137 6.094881 TCCCTGGTTTGAATATTCGTTCATTC 59.905 38.462 10.80 0.00 37.88 2.67
137 138 5.949354 TCCCTGGTTTGAATATTCGTTCATT 59.051 36.000 10.80 0.00 37.88 2.57
138 139 5.357032 GTCCCTGGTTTGAATATTCGTTCAT 59.643 40.000 10.80 0.00 37.88 2.57
139 140 4.698304 GTCCCTGGTTTGAATATTCGTTCA 59.302 41.667 10.80 5.87 36.38 3.18
140 141 4.095932 GGTCCCTGGTTTGAATATTCGTTC 59.904 45.833 10.80 3.54 0.00 3.95
141 142 4.014406 GGTCCCTGGTTTGAATATTCGTT 58.986 43.478 10.80 0.00 0.00 3.85
142 143 3.265995 AGGTCCCTGGTTTGAATATTCGT 59.734 43.478 10.80 0.00 0.00 3.85
143 144 3.877508 GAGGTCCCTGGTTTGAATATTCG 59.122 47.826 10.80 0.00 0.00 3.34
144 145 5.117406 AGAGGTCCCTGGTTTGAATATTC 57.883 43.478 8.60 8.60 0.00 1.75
145 146 4.540099 TGAGAGGTCCCTGGTTTGAATATT 59.460 41.667 0.00 0.00 0.00 1.28
146 147 4.111577 TGAGAGGTCCCTGGTTTGAATAT 58.888 43.478 0.00 0.00 0.00 1.28
147 148 3.526899 TGAGAGGTCCCTGGTTTGAATA 58.473 45.455 0.00 0.00 0.00 1.75
148 149 2.348472 TGAGAGGTCCCTGGTTTGAAT 58.652 47.619 0.00 0.00 0.00 2.57
149 150 1.814429 TGAGAGGTCCCTGGTTTGAA 58.186 50.000 0.00 0.00 0.00 2.69
150 151 1.814429 TTGAGAGGTCCCTGGTTTGA 58.186 50.000 0.00 0.00 0.00 2.69
151 152 2.623416 GTTTTGAGAGGTCCCTGGTTTG 59.377 50.000 0.00 0.00 0.00 2.93
152 153 2.243736 TGTTTTGAGAGGTCCCTGGTTT 59.756 45.455 0.00 0.00 0.00 3.27
153 154 1.850345 TGTTTTGAGAGGTCCCTGGTT 59.150 47.619 0.00 0.00 0.00 3.67
154 155 1.421646 CTGTTTTGAGAGGTCCCTGGT 59.578 52.381 0.00 0.00 0.00 4.00
155 156 1.271597 CCTGTTTTGAGAGGTCCCTGG 60.272 57.143 0.00 0.00 0.00 4.45
156 157 1.699634 TCCTGTTTTGAGAGGTCCCTG 59.300 52.381 0.00 0.00 0.00 4.45
157 158 2.106684 GTTCCTGTTTTGAGAGGTCCCT 59.893 50.000 0.00 0.00 0.00 4.20
158 159 2.106684 AGTTCCTGTTTTGAGAGGTCCC 59.893 50.000 0.00 0.00 0.00 4.46
159 160 3.493767 AGTTCCTGTTTTGAGAGGTCC 57.506 47.619 0.00 0.00 0.00 4.46
160 161 4.040584 ACCTAGTTCCTGTTTTGAGAGGTC 59.959 45.833 0.00 0.00 28.54 3.85
161 162 3.974642 ACCTAGTTCCTGTTTTGAGAGGT 59.025 43.478 0.00 0.00 0.00 3.85
162 163 4.625607 ACCTAGTTCCTGTTTTGAGAGG 57.374 45.455 0.00 0.00 0.00 3.69
163 164 4.214332 GCAACCTAGTTCCTGTTTTGAGAG 59.786 45.833 0.00 0.00 0.00 3.20
164 165 4.134563 GCAACCTAGTTCCTGTTTTGAGA 58.865 43.478 0.00 0.00 0.00 3.27
165 166 4.137543 AGCAACCTAGTTCCTGTTTTGAG 58.862 43.478 0.00 0.00 0.00 3.02
166 167 4.164843 AGCAACCTAGTTCCTGTTTTGA 57.835 40.909 0.00 0.00 0.00 2.69
167 168 4.084013 CGTAGCAACCTAGTTCCTGTTTTG 60.084 45.833 0.00 0.00 0.00 2.44
168 169 4.062991 CGTAGCAACCTAGTTCCTGTTTT 58.937 43.478 0.00 0.00 0.00 2.43
169 170 3.556423 CCGTAGCAACCTAGTTCCTGTTT 60.556 47.826 0.00 0.00 0.00 2.83
170 171 2.028385 CCGTAGCAACCTAGTTCCTGTT 60.028 50.000 0.00 0.00 0.00 3.16
171 172 1.549170 CCGTAGCAACCTAGTTCCTGT 59.451 52.381 0.00 0.00 0.00 4.00
172 173 1.822990 TCCGTAGCAACCTAGTTCCTG 59.177 52.381 0.00 0.00 0.00 3.86
173 174 1.823610 GTCCGTAGCAACCTAGTTCCT 59.176 52.381 0.00 0.00 0.00 3.36
174 175 1.547372 TGTCCGTAGCAACCTAGTTCC 59.453 52.381 0.00 0.00 0.00 3.62
175 176 3.187700 CATGTCCGTAGCAACCTAGTTC 58.812 50.000 0.00 0.00 0.00 3.01
176 177 2.677037 GCATGTCCGTAGCAACCTAGTT 60.677 50.000 0.00 0.00 0.00 2.24
177 178 1.134788 GCATGTCCGTAGCAACCTAGT 60.135 52.381 0.00 0.00 0.00 2.57
178 179 1.571919 GCATGTCCGTAGCAACCTAG 58.428 55.000 0.00 0.00 0.00 3.02
179 180 0.177141 GGCATGTCCGTAGCAACCTA 59.823 55.000 0.00 0.00 0.00 3.08
180 181 1.078426 GGCATGTCCGTAGCAACCT 60.078 57.895 0.00 0.00 0.00 3.50
181 182 1.369091 CTGGCATGTCCGTAGCAACC 61.369 60.000 0.00 0.00 37.80 3.77
182 183 0.391130 TCTGGCATGTCCGTAGCAAC 60.391 55.000 0.00 0.00 37.80 4.17
183 184 0.323302 TTCTGGCATGTCCGTAGCAA 59.677 50.000 0.00 0.00 37.80 3.91
184 185 0.391130 GTTCTGGCATGTCCGTAGCA 60.391 55.000 0.00 0.00 37.80 3.49
185 186 1.090052 GGTTCTGGCATGTCCGTAGC 61.090 60.000 0.00 0.00 37.80 3.58
186 187 0.249120 TGGTTCTGGCATGTCCGTAG 59.751 55.000 0.00 0.00 37.80 3.51
187 188 0.687920 TTGGTTCTGGCATGTCCGTA 59.312 50.000 0.00 0.00 37.80 4.02
188 189 0.889186 GTTGGTTCTGGCATGTCCGT 60.889 55.000 0.00 0.00 37.80 4.69
189 190 0.606401 AGTTGGTTCTGGCATGTCCG 60.606 55.000 0.00 0.00 37.80 4.79
190 191 1.168714 GAGTTGGTTCTGGCATGTCC 58.831 55.000 0.00 0.00 0.00 4.02
191 192 2.191128 AGAGTTGGTTCTGGCATGTC 57.809 50.000 0.00 0.00 0.00 3.06
192 193 3.788227 TTAGAGTTGGTTCTGGCATGT 57.212 42.857 0.00 0.00 0.00 3.21
193 194 3.379372 CCATTAGAGTTGGTTCTGGCATG 59.621 47.826 0.00 0.00 0.00 4.06
194 195 3.624777 CCATTAGAGTTGGTTCTGGCAT 58.375 45.455 0.00 0.00 0.00 4.40
195 196 2.879756 GCCATTAGAGTTGGTTCTGGCA 60.880 50.000 5.82 0.00 35.16 4.92
196 197 1.745653 GCCATTAGAGTTGGTTCTGGC 59.254 52.381 0.00 0.00 36.57 4.85
197 198 3.071874 TGCCATTAGAGTTGGTTCTGG 57.928 47.619 0.00 0.00 36.57 3.86
198 199 6.757897 TTAATGCCATTAGAGTTGGTTCTG 57.242 37.500 0.00 0.00 36.57 3.02
199 200 7.961326 AATTAATGCCATTAGAGTTGGTTCT 57.039 32.000 0.00 0.00 36.57 3.01
200 201 9.120538 TCTAATTAATGCCATTAGAGTTGGTTC 57.879 33.333 0.00 0.00 38.01 3.62
201 202 9.646522 ATCTAATTAATGCCATTAGAGTTGGTT 57.353 29.630 8.06 0.00 43.36 3.67
202 203 9.289782 GATCTAATTAATGCCATTAGAGTTGGT 57.710 33.333 8.06 0.00 43.36 3.67
203 204 8.446273 CGATCTAATTAATGCCATTAGAGTTGG 58.554 37.037 8.06 0.00 43.36 3.77
204 205 8.993121 ACGATCTAATTAATGCCATTAGAGTTG 58.007 33.333 8.06 3.98 43.36 3.16
206 207 9.640963 GTACGATCTAATTAATGCCATTAGAGT 57.359 33.333 8.06 4.90 43.36 3.24
207 208 8.799091 CGTACGATCTAATTAATGCCATTAGAG 58.201 37.037 10.44 0.00 43.36 2.43
208 209 8.301720 ACGTACGATCTAATTAATGCCATTAGA 58.698 33.333 24.41 5.14 43.94 2.10
209 210 8.462143 ACGTACGATCTAATTAATGCCATTAG 57.538 34.615 24.41 0.00 36.08 1.73
210 211 9.345517 GTACGTACGATCTAATTAATGCCATTA 57.654 33.333 24.41 0.00 0.00 1.90
211 212 8.086522 AGTACGTACGATCTAATTAATGCCATT 58.913 33.333 24.41 0.00 0.00 3.16
212 213 7.600065 AGTACGTACGATCTAATTAATGCCAT 58.400 34.615 24.41 0.00 0.00 4.40
213 214 6.973843 AGTACGTACGATCTAATTAATGCCA 58.026 36.000 24.41 0.00 0.00 4.92
214 215 7.864307 AAGTACGTACGATCTAATTAATGCC 57.136 36.000 24.41 0.00 0.00 4.40
224 225 7.848051 CGATTTACAGTAAAGTACGTACGATCT 59.152 37.037 24.41 15.87 0.00 2.75
225 226 7.846107 TCGATTTACAGTAAAGTACGTACGATC 59.154 37.037 24.41 13.80 0.00 3.69
226 227 7.684670 TCGATTTACAGTAAAGTACGTACGAT 58.315 34.615 24.41 14.50 0.00 3.73
227 228 7.056002 TCGATTTACAGTAAAGTACGTACGA 57.944 36.000 24.41 6.97 0.00 3.43
228 229 6.955963 ACTCGATTTACAGTAAAGTACGTACG 59.044 38.462 19.49 15.01 0.00 3.67
229 230 7.746475 ACACTCGATTTACAGTAAAGTACGTAC 59.254 37.037 18.10 18.10 0.00 3.67
230 231 7.806690 ACACTCGATTTACAGTAAAGTACGTA 58.193 34.615 19.69 0.00 0.00 3.57
231 232 6.672147 ACACTCGATTTACAGTAAAGTACGT 58.328 36.000 19.69 0.00 0.00 3.57
232 233 7.558435 AACACTCGATTTACAGTAAAGTACG 57.442 36.000 11.41 14.68 0.00 3.67
286 287 1.745232 ATCGCCATACCGAGCAAAAA 58.255 45.000 0.00 0.00 40.97 1.94
287 288 1.745232 AATCGCCATACCGAGCAAAA 58.255 45.000 0.00 0.00 40.97 2.44
288 289 1.745232 AAATCGCCATACCGAGCAAA 58.255 45.000 0.00 0.00 40.97 3.68
289 290 2.206750 GTAAATCGCCATACCGAGCAA 58.793 47.619 0.00 0.00 40.97 3.91
290 291 1.539496 GGTAAATCGCCATACCGAGCA 60.539 52.381 0.00 0.00 40.97 4.26
291 292 1.145803 GGTAAATCGCCATACCGAGC 58.854 55.000 0.00 0.00 40.97 5.03
295 296 1.607251 CCCTCGGTAAATCGCCATACC 60.607 57.143 0.00 0.00 38.55 2.73
296 297 1.607251 CCCCTCGGTAAATCGCCATAC 60.607 57.143 0.00 0.00 0.00 2.39
297 298 0.682852 CCCCTCGGTAAATCGCCATA 59.317 55.000 0.00 0.00 0.00 2.74
298 299 1.450211 CCCCTCGGTAAATCGCCAT 59.550 57.895 0.00 0.00 0.00 4.40
299 300 2.904905 CCCCTCGGTAAATCGCCA 59.095 61.111 0.00 0.00 0.00 5.69
300 301 2.590859 GCCCCTCGGTAAATCGCC 60.591 66.667 0.00 0.00 0.00 5.54
301 302 2.965462 CGCCCCTCGGTAAATCGC 60.965 66.667 0.00 0.00 33.78 4.58
302 303 2.965462 GCGCCCCTCGGTAAATCG 60.965 66.667 0.00 0.00 38.94 3.34
303 304 2.965462 CGCGCCCCTCGGTAAATC 60.965 66.667 0.00 0.00 38.94 2.17
304 305 4.540735 CCGCGCCCCTCGGTAAAT 62.541 66.667 0.00 0.00 41.85 1.40
310 311 2.965462 GTATTTCCGCGCCCCTCG 60.965 66.667 0.00 0.00 42.12 4.63
311 312 2.965462 CGTATTTCCGCGCCCCTC 60.965 66.667 0.00 0.00 0.00 4.30
319 320 1.259507 CATGGTTACCGCGTATTTCCG 59.740 52.381 4.92 0.00 0.00 4.30
320 321 1.600485 CCATGGTTACCGCGTATTTCC 59.400 52.381 4.92 1.35 0.00 3.13
321 322 1.600485 CCCATGGTTACCGCGTATTTC 59.400 52.381 11.73 0.00 0.00 2.17
322 323 1.209990 TCCCATGGTTACCGCGTATTT 59.790 47.619 11.73 0.00 0.00 1.40
323 324 0.831966 TCCCATGGTTACCGCGTATT 59.168 50.000 11.73 0.00 0.00 1.89
324 325 0.831966 TTCCCATGGTTACCGCGTAT 59.168 50.000 11.73 0.00 0.00 3.06
325 326 0.612229 TTTCCCATGGTTACCGCGTA 59.388 50.000 11.73 0.00 0.00 4.42
326 327 0.034863 ATTTCCCATGGTTACCGCGT 60.035 50.000 11.73 0.00 0.00 6.01
327 328 0.661020 GATTTCCCATGGTTACCGCG 59.339 55.000 11.73 0.00 0.00 6.46
328 329 2.052782 AGATTTCCCATGGTTACCGC 57.947 50.000 11.73 0.00 0.00 5.68
329 330 3.616219 TCAAGATTTCCCATGGTTACCG 58.384 45.455 11.73 0.00 0.00 4.02
330 331 5.993748 TTTCAAGATTTCCCATGGTTACC 57.006 39.130 11.73 0.00 0.00 2.85
331 332 8.093927 TGAAATTTCAAGATTTCCCATGGTTAC 58.906 33.333 18.45 0.00 42.59 2.50
332 333 8.200024 TGAAATTTCAAGATTTCCCATGGTTA 57.800 30.769 18.45 0.00 42.59 2.85
333 334 7.077050 TGAAATTTCAAGATTTCCCATGGTT 57.923 32.000 18.45 0.00 42.59 3.67
334 335 6.684897 TGAAATTTCAAGATTTCCCATGGT 57.315 33.333 18.45 0.00 42.59 3.55
335 336 7.118680 CAGTTGAAATTTCAAGATTTCCCATGG 59.881 37.037 29.34 4.14 46.80 3.66
336 337 7.118680 CCAGTTGAAATTTCAAGATTTCCCATG 59.881 37.037 29.34 16.78 46.80 3.66
337 338 7.163441 CCAGTTGAAATTTCAAGATTTCCCAT 58.837 34.615 29.34 8.25 46.80 4.00
338 339 6.099557 ACCAGTTGAAATTTCAAGATTTCCCA 59.900 34.615 29.34 6.59 46.80 4.37
339 340 6.524734 ACCAGTTGAAATTTCAAGATTTCCC 58.475 36.000 29.34 17.49 46.80 3.97
340 341 8.978539 GTTACCAGTTGAAATTTCAAGATTTCC 58.021 33.333 29.34 18.10 46.80 3.13
341 342 8.978539 GGTTACCAGTTGAAATTTCAAGATTTC 58.021 33.333 29.34 18.72 46.80 2.17
342 343 8.482128 TGGTTACCAGTTGAAATTTCAAGATTT 58.518 29.630 29.34 17.98 46.80 2.17
343 344 8.017418 TGGTTACCAGTTGAAATTTCAAGATT 57.983 30.769 29.34 17.16 46.80 2.40
344 345 7.595819 TGGTTACCAGTTGAAATTTCAAGAT 57.404 32.000 29.34 19.71 46.80 2.40
345 346 7.411486 TTGGTTACCAGTTGAAATTTCAAGA 57.589 32.000 29.34 10.84 46.80 3.02
346 347 8.387354 GTTTTGGTTACCAGTTGAAATTTCAAG 58.613 33.333 29.34 21.04 46.80 3.02
347 348 7.334671 GGTTTTGGTTACCAGTTGAAATTTCAA 59.665 33.333 26.01 26.01 38.68 2.69
348 349 6.819146 GGTTTTGGTTACCAGTTGAAATTTCA 59.181 34.615 16.91 16.91 33.81 2.69
349 350 7.045416 AGGTTTTGGTTACCAGTTGAAATTTC 58.955 34.615 11.41 11.41 38.16 2.17
350 351 6.953101 AGGTTTTGGTTACCAGTTGAAATTT 58.047 32.000 3.65 0.00 38.16 1.82
351 352 6.553953 AGGTTTTGGTTACCAGTTGAAATT 57.446 33.333 3.65 0.00 38.16 1.82
352 353 6.345298 CAAGGTTTTGGTTACCAGTTGAAAT 58.655 36.000 3.65 0.00 38.16 2.17
353 354 5.725362 CAAGGTTTTGGTTACCAGTTGAAA 58.275 37.500 3.65 0.00 38.16 2.69
354 355 5.331876 CAAGGTTTTGGTTACCAGTTGAA 57.668 39.130 3.65 0.00 38.16 2.69
355 356 4.993029 CAAGGTTTTGGTTACCAGTTGA 57.007 40.909 3.65 0.00 38.16 3.18
367 368 2.621526 GGTAGTCCACACCAAGGTTTTG 59.378 50.000 0.00 0.00 36.01 2.44
368 369 2.242708 TGGTAGTCCACACCAAGGTTTT 59.757 45.455 0.00 0.00 43.08 2.43
369 370 1.847737 TGGTAGTCCACACCAAGGTTT 59.152 47.619 0.00 0.00 43.08 3.27
370 371 1.513858 TGGTAGTCCACACCAAGGTT 58.486 50.000 0.00 0.00 43.08 3.50
371 372 3.250816 TGGTAGTCCACACCAAGGT 57.749 52.632 0.00 0.00 43.08 3.50
421 422 1.464376 CCGTGATAGTCCGGCATCCT 61.464 60.000 0.00 0.00 37.43 3.24
465 466 7.067129 CAGGCGTATTTAGATATCTAGCAGGTA 59.933 40.741 17.75 0.65 0.00 3.08
466 467 5.952947 AGGCGTATTTAGATATCTAGCAGGT 59.047 40.000 17.75 6.51 0.00 4.00
471 472 6.093771 ACGTCCAGGCGTATTTAGATATCTAG 59.906 42.308 12.16 2.55 43.83 2.43
490 491 5.359009 AGATTATTTCTTCCTCGTACGTCCA 59.641 40.000 16.05 0.00 0.00 4.02
512 513 1.933021 TTAAGGCCGTCTCTGGAAGA 58.067 50.000 0.00 0.00 43.69 2.87
513 514 2.990066 ATTAAGGCCGTCTCTGGAAG 57.010 50.000 0.00 0.00 0.00 3.46
514 515 5.367945 AATAATTAAGGCCGTCTCTGGAA 57.632 39.130 0.00 0.00 0.00 3.53
515 516 5.367945 AAATAATTAAGGCCGTCTCTGGA 57.632 39.130 0.00 0.00 0.00 3.86
516 517 7.745620 AATAAATAATTAAGGCCGTCTCTGG 57.254 36.000 0.00 0.00 0.00 3.86
558 575 1.302511 AATGCCGAAGCGTTCCTGT 60.303 52.632 0.00 0.00 45.22 4.00
559 576 3.578456 AATGCCGAAGCGTTCCTG 58.422 55.556 0.00 0.00 45.22 3.86
570 587 5.903810 ACTTCCTTTACTAGTAGAATGCCG 58.096 41.667 3.59 0.00 0.00 5.69
588 605 5.473796 TTCGTTTACACTGTCAAACTTCC 57.526 39.130 10.90 0.00 33.43 3.46
596 613 3.739300 TGCTAGCTTTCGTTTACACTGTC 59.261 43.478 17.23 0.00 0.00 3.51
607 624 4.238514 ACAACTAAGTCTGCTAGCTTTCG 58.761 43.478 17.23 2.01 0.00 3.46
623 640 4.318192 CGTACATTGCACAACGAACAACTA 60.318 41.667 3.89 0.00 37.53 2.24
690 713 2.593436 ACGGCCGTCCAAACAAGG 60.593 61.111 28.70 0.00 0.00 3.61
795 833 4.986708 TGGCTTGGAAACGGCCCC 62.987 66.667 0.00 0.00 46.80 5.80
811 849 1.207089 TCGGCAGGGAGTCATTAGTTG 59.793 52.381 0.00 0.00 0.00 3.16
826 864 3.604494 CTGTACTGCGTCGTCGGCA 62.604 63.158 3.90 0.00 37.56 5.69
883 925 4.435970 TGGGCTCGCGAGGGTCTA 62.436 66.667 35.10 10.27 35.63 2.59
985 1059 2.270205 CATGGCAAGGCGAGGAGT 59.730 61.111 0.00 0.00 0.00 3.85
1043 1117 2.101415 CTCACCTCGGCATACATTCTGA 59.899 50.000 0.00 0.00 0.00 3.27
1081 1155 0.399949 ACCCAGAACCACAGGACTGA 60.400 55.000 6.29 0.00 34.72 3.41
1087 1161 0.389025 GCCAAAACCCAGAACCACAG 59.611 55.000 0.00 0.00 0.00 3.66
1166 1252 1.300963 CTCCACCACACCCTGGATG 59.699 63.158 0.00 0.00 43.95 3.51
1230 1318 0.677731 TTGATCAAGAGGCGGGCAAG 60.678 55.000 3.38 0.00 0.00 4.01
1232 1320 1.377202 GTTGATCAAGAGGCGGGCA 60.377 57.895 8.80 0.00 0.00 5.36
1244 1332 2.846039 TCTCGTAGGCTTCGTTGATC 57.154 50.000 13.25 0.00 0.00 2.92
1491 1590 7.201635 GGGCCAACAAGCATTATAATGAAAAAG 60.202 37.037 26.22 13.58 38.70 2.27
1545 1662 1.924524 CTAATTACGGCCACACGACAG 59.075 52.381 2.24 0.00 37.61 3.51
1547 1664 2.282701 TCTAATTACGGCCACACGAC 57.717 50.000 2.24 0.00 37.61 4.34
1548 1665 2.492881 TCTTCTAATTACGGCCACACGA 59.507 45.455 2.24 0.00 37.61 4.35
1653 1859 5.994668 GGGGATGAACAAGATAGAAGATCAC 59.005 44.000 0.00 0.00 0.00 3.06
1730 1986 2.032528 CACACCCTGTGCCGACAT 59.967 61.111 0.00 0.00 41.89 3.06
1783 2041 0.108585 ATATGACGGCCGCCAGAAAT 59.891 50.000 28.58 13.00 0.00 2.17
1787 2045 1.738099 GCTATATGACGGCCGCCAG 60.738 63.158 28.58 9.88 0.00 4.85
1799 2057 7.454380 ACTCAGCTCTTCTTTCTATGGCTATAT 59.546 37.037 0.00 0.00 0.00 0.86
1838 2096 5.819991 ACCAACAATTCTGGTACATGAGAT 58.180 37.500 0.00 0.00 45.58 2.75
1839 2097 5.241403 ACCAACAATTCTGGTACATGAGA 57.759 39.130 0.00 0.00 45.58 3.27
2057 2363 1.366366 GACGTACACACCCTGCTGT 59.634 57.895 0.00 0.00 0.00 4.40
2075 2388 2.721274 TTCAAATGACGCCCATGTTG 57.279 45.000 0.00 0.00 35.24 3.33
2076 2389 2.562298 ACATTCAAATGACGCCCATGTT 59.438 40.909 9.62 0.00 39.67 2.71
2077 2390 2.164219 GACATTCAAATGACGCCCATGT 59.836 45.455 9.62 0.00 39.67 3.21
2145 2458 5.351948 TGTCATGAATACCGAGAATTCCA 57.648 39.130 0.00 0.00 33.28 3.53
2230 2550 9.997482 GAAAAACACCATTGTCGTTATATATGT 57.003 29.630 0.00 0.00 33.55 2.29
2233 2553 8.670135 CCAGAAAAACACCATTGTCGTTATATA 58.330 33.333 0.00 0.00 33.55 0.86
2338 2667 9.955208 CATGTTGATACACATAAGCATATTTGT 57.045 29.630 6.07 6.07 35.51 2.83
2386 2715 8.039603 ACACACGCTGATCAGAAAATTAATTA 57.960 30.769 27.04 0.00 0.00 1.40
2387 2716 6.913170 ACACACGCTGATCAGAAAATTAATT 58.087 32.000 27.04 0.00 0.00 1.40
2388 2717 6.500684 ACACACGCTGATCAGAAAATTAAT 57.499 33.333 27.04 1.14 0.00 1.40
2389 2718 5.940192 ACACACGCTGATCAGAAAATTAA 57.060 34.783 27.04 0.00 0.00 1.40
2479 2809 6.825610 TCTGACCCTTGTTTGCATTTTATTT 58.174 32.000 0.00 0.00 0.00 1.40
2668 3003 6.291377 ACCGAGTAATATCAACATGATTGCT 58.709 36.000 0.00 0.00 38.26 3.91
2716 3054 9.807649 GCCAACAAATTACAAGAGAATCATAAT 57.192 29.630 0.00 0.00 37.82 1.28
2759 3097 8.250332 TGGCCATATTGAAAATTAGTTCTGTTC 58.750 33.333 0.00 0.00 0.00 3.18
2764 3102 7.547227 ACACTGGCCATATTGAAAATTAGTTC 58.453 34.615 5.51 0.00 0.00 3.01
2771 3109 5.774690 AGAAAGACACTGGCCATATTGAAAA 59.225 36.000 5.51 0.00 0.00 2.29
2852 3198 7.819644 TGGAAATAGATCACACAGTCAAATTG 58.180 34.615 0.00 0.00 0.00 2.32
2871 3218 5.484998 ACAAGGCACCTGAAATAATGGAAAT 59.515 36.000 0.00 0.00 0.00 2.17
2875 3222 3.511146 ACACAAGGCACCTGAAATAATGG 59.489 43.478 0.00 0.00 0.00 3.16
3144 3495 9.605955 TGACAAAATTACGACATAAACATTCAG 57.394 29.630 0.00 0.00 0.00 3.02
3337 3693 9.045745 ACATATGTACCTTCCCAAAAATGATTT 57.954 29.630 6.56 0.00 0.00 2.17
3571 3935 1.298859 ATGAGACCAAAGTTCCGCGC 61.299 55.000 0.00 0.00 0.00 6.86
3572 3936 2.004583 TATGAGACCAAAGTTCCGCG 57.995 50.000 0.00 0.00 0.00 6.46
3601 3965 3.105937 GACAAAGGACAACAAGTTTCGC 58.894 45.455 0.00 0.00 0.00 4.70
3623 3987 4.966850 ATAGACTTCACGAACAAACACG 57.033 40.909 0.00 0.00 0.00 4.49
3624 3988 8.684973 AGTATATAGACTTCACGAACAAACAC 57.315 34.615 0.00 0.00 0.00 3.32
3765 4133 2.210116 CTAGCCAACAACACGACTTGT 58.790 47.619 0.00 0.00 41.74 3.16
3839 4207 4.588951 AGTCACACTGAAGATTACAGACCA 59.411 41.667 0.00 0.00 38.55 4.02
3856 4224 6.505044 TCGTACTCTTATAAGCAAGTCACA 57.495 37.500 7.67 0.00 0.00 3.58
3907 4275 3.802948 ACTATCACCTCTACTTTGCCG 57.197 47.619 0.00 0.00 0.00 5.69
3933 4301 4.429522 ATGCCTGCATGTCGCCCA 62.430 61.111 3.36 0.00 41.33 5.36
3951 4319 1.741770 ACGGATTGCCAGCTTCGTC 60.742 57.895 0.00 0.00 0.00 4.20
3959 4327 2.282816 CCAACCCACGGATTGCCA 60.283 61.111 0.00 0.00 0.00 4.92
3963 4331 0.757188 TTTGTGCCAACCCACGGATT 60.757 50.000 0.00 0.00 38.55 3.01
4301 4669 6.307558 TGATGCTTGCAATGTAAATTGTAACG 59.692 34.615 5.14 4.06 33.68 3.18
4309 4677 7.600960 TCTTATTGTGATGCTTGCAATGTAAA 58.399 30.769 0.00 0.00 34.97 2.01
4340 4708 7.644157 GGAAATCACACTTTGTACTTTCTTCAC 59.356 37.037 0.00 0.00 33.79 3.18
4379 4747 4.566004 TGCACATACTCAGTGGTTAGTTC 58.434 43.478 0.00 0.00 37.46 3.01



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.