Multiple sequence alignment - TraesCS4A01G302300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G302300 chr4A 100.000 2983 0 0 1990 4972 598780546 598777564 0.000000e+00 5509.0
1 TraesCS4A01G302300 chr4A 100.000 1534 0 0 1 1534 598782535 598781002 0.000000e+00 2833.0
2 TraesCS4A01G302300 chr4A 76.710 687 134 22 2900 3572 599351184 599351858 4.730000e-95 359.0
3 TraesCS4A01G302300 chr4A 92.754 69 4 1 2509 2577 598779912 598779845 1.140000e-16 99.0
4 TraesCS4A01G302300 chr4A 92.754 69 4 1 2624 2691 598780027 598779959 1.140000e-16 99.0
5 TraesCS4A01G302300 chr4D 94.546 2347 79 10 2621 4952 4489869 4492181 0.000000e+00 3579.0
6 TraesCS4A01G302300 chr4D 92.495 1026 33 17 544 1534 4488333 4489349 0.000000e+00 1428.0
7 TraesCS4A01G302300 chr4D 90.631 523 23 7 1997 2519 4489360 4489856 0.000000e+00 671.0
8 TraesCS4A01G302300 chr4D 73.022 556 104 32 975 1519 4471991 4472511 2.400000e-33 154.0
9 TraesCS4A01G302300 chr4B 85.938 2297 214 41 2668 4920 7464000 7466231 0.000000e+00 2351.0
10 TraesCS4A01G302300 chr4B 85.895 2297 215 41 2668 4920 7477838 7480069 0.000000e+00 2346.0
11 TraesCS4A01G302300 chr4B 81.884 1391 180 42 2913 4278 7485080 7486423 0.000000e+00 1107.0
12 TraesCS4A01G302300 chr4B 87.139 762 63 17 367 1101 7462246 7462999 0.000000e+00 832.0
13 TraesCS4A01G302300 chr4B 92.481 532 37 3 1990 2519 7463399 7463929 0.000000e+00 758.0
14 TraesCS4A01G302300 chr4B 92.481 532 37 3 1990 2519 7477237 7477767 0.000000e+00 758.0
15 TraesCS4A01G302300 chr4B 91.467 375 25 2 1164 1534 7463006 7463377 4.440000e-140 508.0
16 TraesCS4A01G302300 chr4B 91.467 375 25 2 1164 1534 7476844 7477215 4.440000e-140 508.0
17 TraesCS4A01G302300 chr4B 80.055 722 76 25 3 687 7483961 7484651 1.620000e-129 473.0
18 TraesCS4A01G302300 chr4B 91.463 328 20 2 774 1101 7476518 7476837 1.270000e-120 444.0
19 TraesCS4A01G302300 chr4B 89.429 350 33 3 367 713 7475896 7476244 5.910000e-119 438.0
20 TraesCS4A01G302300 chr4B 72.468 632 113 37 2921 3538 7032645 7032061 4.010000e-31 147.0
21 TraesCS4A01G302300 chr4B 100.000 38 0 0 704 741 7476426 7476463 2.480000e-08 71.3
22 TraesCS4A01G302300 chr1B 91.662 1703 103 19 2886 4558 46002549 46004242 0.000000e+00 2322.0
23 TraesCS4A01G302300 chr1B 91.714 1400 85 15 3183 4558 46061713 46063105 0.000000e+00 1914.0
24 TraesCS4A01G302300 chr1B 86.393 1411 126 33 175 1534 46000348 46001743 0.000000e+00 1482.0
25 TraesCS4A01G302300 chr1B 86.089 1409 131 32 176 1534 46059259 46060652 0.000000e+00 1456.0
26 TraesCS4A01G302300 chr1B 87.523 545 44 12 1990 2519 46060673 46061208 4.260000e-170 608.0
27 TraesCS4A01G302300 chr1B 87.339 545 45 12 1990 2519 46001764 46002299 1.980000e-168 603.0
28 TraesCS4A01G302300 chr1B 92.911 395 26 1 4558 4952 46017800 46018192 1.550000e-159 573.0
29 TraesCS4A01G302300 chr1B 88.861 395 25 6 4558 4952 46087812 46088187 7.540000e-128 468.0
30 TraesCS4A01G302300 chr1B 93.511 262 14 3 2886 3146 46061458 46061717 2.170000e-103 387.0
31 TraesCS4A01G302300 chr1B 90.661 257 20 3 2621 2876 46061221 46061474 6.170000e-89 339.0
32 TraesCS4A01G302300 chr1B 90.272 257 21 3 2621 2876 46002312 46002565 2.870000e-87 333.0
33 TraesCS4A01G302300 chrUn 79.778 722 78 25 3 687 412637845 412638535 3.510000e-126 462.0
34 TraesCS4A01G302300 chrUn 100.000 231 0 0 4742 4972 47268154 47267924 1.280000e-115 427.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G302300 chr4A 598777564 598782535 4971 True 2135.000000 5509 96.377000 1 4972 4 chr4A.!!$R1 4971
1 TraesCS4A01G302300 chr4A 599351184 599351858 674 False 359.000000 359 76.710000 2900 3572 1 chr4A.!!$F1 672
2 TraesCS4A01G302300 chr4D 4488333 4492181 3848 False 1892.666667 3579 92.557333 544 4952 3 chr4D.!!$F2 4408
3 TraesCS4A01G302300 chr4B 7462246 7466231 3985 False 1112.250000 2351 89.256250 367 4920 4 chr4B.!!$F1 4553
4 TraesCS4A01G302300 chr4B 7475896 7486423 10527 False 768.162500 2346 89.084250 3 4920 8 chr4B.!!$F2 4917
5 TraesCS4A01G302300 chr1B 46000348 46004242 3894 False 1185.000000 2322 88.916500 175 4558 4 chr1B.!!$F3 4383
6 TraesCS4A01G302300 chr1B 46059259 46063105 3846 False 940.800000 1914 89.899600 176 4558 5 chr1B.!!$F4 4382
7 TraesCS4A01G302300 chrUn 412637845 412638535 690 False 462.000000 462 79.778000 3 687 1 chrUn.!!$F1 684

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
941 1228 1.032657 ACTCCTCATCCACTCCGACG 61.033 60.0 0.00 0.00 0.00 5.12 F
1344 1639 0.107456 GACATCACCGGCCTGATGAT 59.893 55.0 31.34 20.29 36.13 2.45 F
2574 2885 0.035152 AGCCATCGACAATCCTGCAA 60.035 50.0 0.00 0.00 0.00 4.08 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2555 2866 0.035152 TTGCAGGATTGTCGATGGCT 60.035 50.000 0.00 0.0 0.00 4.75 R
2592 2903 0.179054 GCCAACCTATCGGGGTTCTC 60.179 60.000 5.62 0.0 46.58 2.87 R
4423 4841 1.068741 CCTCCGCCTCCACACTTATAC 59.931 57.143 0.00 0.0 0.00 1.47 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
85 86 7.691213 TGTGTACTTTAATAAGGTTGATCCCA 58.309 34.615 0.00 0.00 35.61 4.37
104 106 8.998814 TGATCCCATACTAAGAAAATTAGTCCA 58.001 33.333 3.67 0.00 36.67 4.02
123 125 6.151691 AGTCCATGTTCAAAAATGTTCATCG 58.848 36.000 0.00 0.00 0.00 3.84
169 171 9.498176 CATGTATCTTGAAACTATCCATCATGA 57.502 33.333 0.00 0.00 33.51 3.07
457 489 7.746526 AGAATTTTTAAATTGAGCGATCAGC 57.253 32.000 2.57 0.00 41.46 4.26
474 506 6.507456 GCGATCAGCTTTTAAATTGCATGAAG 60.507 38.462 13.69 12.31 44.04 3.02
475 507 6.529125 CGATCAGCTTTTAAATTGCATGAAGT 59.471 34.615 13.69 0.00 0.00 3.01
537 572 8.339714 TGACAATTTTTACGAAGTTACAGGAAG 58.660 33.333 0.00 0.00 37.78 3.46
615 660 1.626686 TTCCATGGGTGCGTTGATTT 58.373 45.000 13.02 0.00 0.00 2.17
750 1000 3.375922 CACACACAACTTTCTTTACCGGT 59.624 43.478 13.98 13.98 0.00 5.28
751 1001 4.011698 ACACACAACTTTCTTTACCGGTT 58.988 39.130 15.04 0.00 0.00 4.44
941 1228 1.032657 ACTCCTCATCCACTCCGACG 61.033 60.000 0.00 0.00 0.00 5.12
942 1229 2.105128 CCTCATCCACTCCGACGC 59.895 66.667 0.00 0.00 0.00 5.19
943 1230 2.105128 CTCATCCACTCCGACGCC 59.895 66.667 0.00 0.00 0.00 5.68
975 1262 3.391665 CTCCGATTTCCCCAGCGCT 62.392 63.158 2.64 2.64 0.00 5.92
989 1280 3.710722 CGCTCCCTGCCTCCAGTT 61.711 66.667 0.00 0.00 37.38 3.16
1162 1453 2.524148 GGTTTTGGCCTGGCTGGT 60.524 61.111 19.68 0.00 38.35 4.00
1302 1597 1.407437 GGTCATGAACCGCTTCCTCAT 60.407 52.381 0.00 0.00 38.58 2.90
1343 1638 1.522092 GACATCACCGGCCTGATGA 59.478 57.895 31.34 19.12 36.13 2.92
1344 1639 0.107456 GACATCACCGGCCTGATGAT 59.893 55.000 31.34 20.29 36.13 2.45
1345 1640 2.625375 CATCACCGGCCTGATGATG 58.375 57.895 24.13 21.94 42.18 3.07
1395 1690 3.089284 TGCTCTCGTTATTCTGGTCTCA 58.911 45.455 0.00 0.00 0.00 3.27
1439 1734 4.398988 GTCTCTTCTCTGCTCTGAGATTCA 59.601 45.833 9.28 0.00 41.98 2.57
1447 1742 2.235402 TGCTCTGAGATTCACATGCAGA 59.765 45.455 9.28 0.00 34.71 4.26
1486 1781 2.358737 GACAAGGTGGACGGCCTG 60.359 66.667 9.82 0.00 36.30 4.85
1505 1800 1.598962 GTGCAGCAGCTGAAGGTGA 60.599 57.895 27.39 0.00 45.66 4.02
2038 2333 2.433970 TCCATGTTGTGCGATCCAGATA 59.566 45.455 0.00 0.00 0.00 1.98
2100 2399 3.119101 CCTGTCGTGTAGCCATAAGTTCT 60.119 47.826 0.00 0.00 0.00 3.01
2167 2467 1.296056 GCCAACAGCGATGTTACGGT 61.296 55.000 19.96 0.00 44.63 4.83
2173 2473 0.319083 AGCGATGTTACGGTTCCACA 59.681 50.000 0.00 0.00 41.08 4.17
2243 2543 7.761409 TGCTATTCTGCTAATGGTAGTTTTTG 58.239 34.615 0.00 0.00 0.00 2.44
2258 2559 1.088306 TTTTGTGGTGTGTCCGTGTC 58.912 50.000 0.00 0.00 39.52 3.67
2375 2676 1.022451 TTTCCTACCAACGCGATGCC 61.022 55.000 15.93 0.00 0.00 4.40
2445 2746 0.109723 CCTTTTCGGGGTTCTCCACA 59.890 55.000 0.00 0.00 36.84 4.17
2486 2797 0.742990 TTTCGATAGGTTGGCGCAGG 60.743 55.000 10.83 0.00 0.00 4.85
2514 2825 1.005037 GTCACGACCATGTGGCTCA 60.005 57.895 0.00 0.00 41.22 4.26
2527 2838 4.327982 TGTGGCTCATGTCTAGAATAGC 57.672 45.455 0.00 1.16 38.99 2.97
2528 2839 3.963374 TGTGGCTCATGTCTAGAATAGCT 59.037 43.478 13.44 0.00 38.99 3.32
2529 2840 4.202192 TGTGGCTCATGTCTAGAATAGCTG 60.202 45.833 13.44 1.22 38.99 4.24
2530 2841 4.038522 GTGGCTCATGTCTAGAATAGCTGA 59.961 45.833 13.44 4.64 38.99 4.26
2531 2842 4.651045 TGGCTCATGTCTAGAATAGCTGAA 59.349 41.667 13.44 0.00 38.99 3.02
2532 2843 5.306419 TGGCTCATGTCTAGAATAGCTGAAT 59.694 40.000 13.44 0.00 38.99 2.57
2533 2844 6.183361 TGGCTCATGTCTAGAATAGCTGAATT 60.183 38.462 13.44 0.00 38.99 2.17
2534 2845 6.709846 GGCTCATGTCTAGAATAGCTGAATTT 59.290 38.462 13.44 0.00 38.99 1.82
2535 2846 7.875041 GGCTCATGTCTAGAATAGCTGAATTTA 59.125 37.037 13.44 0.00 38.99 1.40
2536 2847 8.707839 GCTCATGTCTAGAATAGCTGAATTTAC 58.292 37.037 0.00 0.00 38.99 2.01
2537 2848 9.979578 CTCATGTCTAGAATAGCTGAATTTACT 57.020 33.333 0.00 0.00 38.99 2.24
2541 2852 9.371136 TGTCTAGAATAGCTGAATTTACTTGTG 57.629 33.333 0.00 0.00 38.99 3.33
2542 2853 9.372369 GTCTAGAATAGCTGAATTTACTTGTGT 57.628 33.333 0.00 0.00 38.99 3.72
2543 2854 9.944376 TCTAGAATAGCTGAATTTACTTGTGTT 57.056 29.630 0.00 0.00 38.99 3.32
2546 2857 8.230486 AGAATAGCTGAATTTACTTGTGTTTCG 58.770 33.333 0.00 0.00 0.00 3.46
2547 2858 5.108385 AGCTGAATTTACTTGTGTTTCGG 57.892 39.130 0.00 0.00 0.00 4.30
2548 2859 4.023193 AGCTGAATTTACTTGTGTTTCGGG 60.023 41.667 0.00 0.00 0.00 5.14
2549 2860 4.261447 GCTGAATTTACTTGTGTTTCGGGT 60.261 41.667 0.00 0.00 0.00 5.28
2550 2861 5.049267 GCTGAATTTACTTGTGTTTCGGGTA 60.049 40.000 0.00 0.00 0.00 3.69
2551 2862 6.513720 GCTGAATTTACTTGTGTTTCGGGTAA 60.514 38.462 0.00 0.00 0.00 2.85
2552 2863 7.513371 TGAATTTACTTGTGTTTCGGGTAAT 57.487 32.000 0.00 0.00 0.00 1.89
2553 2864 7.364200 TGAATTTACTTGTGTTTCGGGTAATG 58.636 34.615 0.00 0.00 0.00 1.90
2554 2865 5.692613 TTTACTTGTGTTTCGGGTAATGG 57.307 39.130 0.00 0.00 0.00 3.16
2555 2866 3.495434 ACTTGTGTTTCGGGTAATGGA 57.505 42.857 0.00 0.00 0.00 3.41
2556 2867 3.408634 ACTTGTGTTTCGGGTAATGGAG 58.591 45.455 0.00 0.00 0.00 3.86
2557 2868 1.816074 TGTGTTTCGGGTAATGGAGC 58.184 50.000 0.00 0.00 0.00 4.70
2558 2869 1.092348 GTGTTTCGGGTAATGGAGCC 58.908 55.000 0.00 0.00 42.83 4.70
2564 2875 3.307379 GGGTAATGGAGCCATCGAC 57.693 57.895 1.88 4.47 45.84 4.20
2565 2876 0.468226 GGGTAATGGAGCCATCGACA 59.532 55.000 1.88 0.00 45.84 4.35
2566 2877 1.134220 GGGTAATGGAGCCATCGACAA 60.134 52.381 1.88 0.00 45.84 3.18
2567 2878 2.487265 GGGTAATGGAGCCATCGACAAT 60.487 50.000 1.88 0.00 45.84 2.71
2568 2879 2.808543 GGTAATGGAGCCATCGACAATC 59.191 50.000 1.88 0.00 35.31 2.67
2569 2880 1.972872 AATGGAGCCATCGACAATCC 58.027 50.000 1.88 0.00 35.31 3.01
2570 2881 1.135094 ATGGAGCCATCGACAATCCT 58.865 50.000 0.00 0.00 29.42 3.24
2571 2882 0.178767 TGGAGCCATCGACAATCCTG 59.821 55.000 8.68 0.00 0.00 3.86
2572 2883 1.162800 GGAGCCATCGACAATCCTGC 61.163 60.000 0.00 0.00 0.00 4.85
2573 2884 0.462581 GAGCCATCGACAATCCTGCA 60.463 55.000 0.00 0.00 0.00 4.41
2574 2885 0.035152 AGCCATCGACAATCCTGCAA 60.035 50.000 0.00 0.00 0.00 4.08
2575 2886 0.810648 GCCATCGACAATCCTGCAAA 59.189 50.000 0.00 0.00 0.00 3.68
2576 2887 1.406539 GCCATCGACAATCCTGCAAAT 59.593 47.619 0.00 0.00 0.00 2.32
2577 2888 2.159198 GCCATCGACAATCCTGCAAATT 60.159 45.455 0.00 0.00 0.00 1.82
2578 2889 3.699067 CCATCGACAATCCTGCAAATTC 58.301 45.455 0.00 0.00 0.00 2.17
2579 2890 3.129113 CCATCGACAATCCTGCAAATTCA 59.871 43.478 0.00 0.00 0.00 2.57
2580 2891 4.348656 CATCGACAATCCTGCAAATTCAG 58.651 43.478 0.00 0.00 0.00 3.02
2581 2892 2.162208 TCGACAATCCTGCAAATTCAGC 59.838 45.455 0.00 0.00 32.87 4.26
2582 2893 2.163010 CGACAATCCTGCAAATTCAGCT 59.837 45.455 4.71 0.00 32.87 4.24
2583 2894 3.374988 CGACAATCCTGCAAATTCAGCTA 59.625 43.478 4.71 0.00 32.87 3.32
2584 2895 4.036027 CGACAATCCTGCAAATTCAGCTAT 59.964 41.667 4.71 0.00 32.87 2.97
2585 2896 5.449588 CGACAATCCTGCAAATTCAGCTATT 60.450 40.000 4.71 0.00 32.87 1.73
2586 2897 5.899299 ACAATCCTGCAAATTCAGCTATTC 58.101 37.500 4.71 0.00 32.87 1.75
2587 2898 5.655532 ACAATCCTGCAAATTCAGCTATTCT 59.344 36.000 4.71 0.00 32.87 2.40
2588 2899 6.830324 ACAATCCTGCAAATTCAGCTATTCTA 59.170 34.615 4.71 0.00 32.87 2.10
2589 2900 7.013083 ACAATCCTGCAAATTCAGCTATTCTAG 59.987 37.037 4.71 0.00 32.87 2.43
2590 2901 5.994250 TCCTGCAAATTCAGCTATTCTAGT 58.006 37.500 4.71 0.00 32.87 2.57
2591 2902 5.819379 TCCTGCAAATTCAGCTATTCTAGTG 59.181 40.000 4.71 0.00 32.87 2.74
2592 2903 5.008415 CCTGCAAATTCAGCTATTCTAGTGG 59.992 44.000 4.71 0.00 32.87 4.00
2593 2904 5.744171 TGCAAATTCAGCTATTCTAGTGGA 58.256 37.500 4.71 0.00 0.00 4.02
2594 2905 5.819379 TGCAAATTCAGCTATTCTAGTGGAG 59.181 40.000 4.71 0.00 0.00 3.86
2595 2906 6.051717 GCAAATTCAGCTATTCTAGTGGAGA 58.948 40.000 0.00 0.00 0.00 3.71
2603 2914 2.544844 TTCTAGTGGAGAACCCCGAT 57.455 50.000 0.00 0.00 39.36 4.18
2604 2915 3.675348 TTCTAGTGGAGAACCCCGATA 57.325 47.619 0.00 0.00 39.36 2.92
2605 2916 3.225177 TCTAGTGGAGAACCCCGATAG 57.775 52.381 0.00 0.00 34.81 2.08
2617 2928 2.499205 CGATAGGTTGGCGCAGGA 59.501 61.111 10.83 0.00 0.00 3.86
2618 2929 1.069765 CGATAGGTTGGCGCAGGAT 59.930 57.895 10.83 0.00 0.00 3.24
2619 2930 0.532862 CGATAGGTTGGCGCAGGATT 60.533 55.000 10.83 0.00 0.00 3.01
2642 2953 6.935240 TGTATGGCCATAACTAGAATAGCT 57.065 37.500 27.04 0.00 44.39 3.32
2646 2957 5.611374 TGGCCATAACTAGAATAGCTGAAC 58.389 41.667 0.00 0.00 44.39 3.18
2666 2988 6.056884 TGAACTTACTTGTGTTTCGGGTAAT 58.943 36.000 0.00 0.00 0.00 1.89
2683 3005 3.495100 GGTAATGGAGCCATCGACAATCT 60.495 47.826 1.88 0.00 35.31 2.40
2700 3022 6.803320 CGACAATCTTGCAAATGTTATGTCTT 59.197 34.615 17.60 0.00 34.12 3.01
2704 3026 6.194796 TCTTGCAAATGTTATGTCTTAGCC 57.805 37.500 0.00 0.00 0.00 3.93
2765 3087 5.063564 TCAGTACTACATATGCTCTATCGCG 59.936 44.000 0.00 0.00 0.00 5.87
2817 3139 5.860941 ACCATTTATTGTGTTGACAACCA 57.139 34.783 15.59 10.10 44.90 3.67
2833 3155 4.906618 ACAACCATGATAGGAAACGACTT 58.093 39.130 0.00 0.00 0.00 3.01
3305 3657 7.520451 TGTAACTTGTGAGCTCTAGACTTAA 57.480 36.000 16.19 0.00 0.00 1.85
3412 3768 9.035890 TCAGTTCACTTAATCTCTCCAGATTTA 57.964 33.333 2.66 0.00 45.68 1.40
3514 3874 5.564259 GCATGTTCAAGATCATAATGGAGGC 60.564 44.000 0.00 0.00 0.00 4.70
3647 4008 9.745880 TGTCGTTGAAATTTATATAGAGAGGTC 57.254 33.333 0.00 0.00 0.00 3.85
3684 4045 2.303311 AGCACTTTAGTTCCAGGTCTCC 59.697 50.000 0.00 0.00 0.00 3.71
3712 4073 3.578716 TCCAATTGGGCCGTTGAATTTTA 59.421 39.130 24.29 0.00 36.21 1.52
4081 4442 1.029681 GTGTTTGGCTTTCGAGGGTT 58.970 50.000 0.00 0.00 0.00 4.11
4127 4488 3.377656 GGGAGTCCAGTCTCGCAA 58.622 61.111 12.30 0.00 43.67 4.85
4186 4547 9.803315 GATGTGTCAACTCTATACATGTTTCTA 57.197 33.333 2.30 0.00 32.58 2.10
4221 4588 4.181309 TGGTTGTTGGTGACTTTTGTTC 57.819 40.909 0.00 0.00 0.00 3.18
4382 4799 4.259690 GCGACTCACAATATTTGGACGTAC 60.260 45.833 0.00 0.00 34.12 3.67
4391 4809 9.485591 CACAATATTTGGACGTACTAAACATTC 57.514 33.333 0.00 0.00 32.18 2.67
4423 4841 4.219070 TCTGAAATCTTCAATGTGGCTTGG 59.781 41.667 0.00 0.00 39.58 3.61
4463 4881 3.265479 AGGCAATAGCAGGAGAAAGAAGT 59.735 43.478 0.00 0.00 44.61 3.01
4575 5007 5.876357 TCTGGGCTTTAGTATGAAACAGTT 58.124 37.500 0.00 0.00 0.00 3.16
4687 5119 3.985019 ATGAAAGAAAATGCATGGCCA 57.015 38.095 8.56 8.56 0.00 5.36
4688 5120 3.985019 TGAAAGAAAATGCATGGCCAT 57.015 38.095 14.09 14.09 0.00 4.40
4695 5127 4.406326 AGAAAATGCATGGCCATATGTTCA 59.594 37.500 24.33 15.94 0.00 3.18
4775 5207 4.670227 GCATTCGCTCTTCTAAAGTTGT 57.330 40.909 0.00 0.00 34.30 3.32
4798 5230 1.487452 CCATACGGCCATGTTCGTCG 61.487 60.000 12.71 3.59 40.31 5.12
4799 5231 0.804544 CATACGGCCATGTTCGTCGT 60.805 55.000 12.71 9.19 40.31 4.34
4843 5275 6.831868 GGTAATTAGAAGGTGGCCTCAAATTA 59.168 38.462 3.32 4.71 30.89 1.40
4925 5357 0.179181 CACACAACTCGGCATGATGC 60.179 55.000 9.33 9.33 44.08 3.91
4960 5399 7.751732 GGAATTTTTCCTTCATGCAAATAACC 58.248 34.615 0.00 0.00 46.57 2.85
4961 5400 7.607607 GGAATTTTTCCTTCATGCAAATAACCT 59.392 33.333 0.00 0.00 46.57 3.50
4963 5402 5.659440 TTTCCTTCATGCAAATAACCTCC 57.341 39.130 0.00 0.00 0.00 4.30
4964 5403 4.314522 TCCTTCATGCAAATAACCTCCA 57.685 40.909 0.00 0.00 0.00 3.86
4966 5405 5.271598 TCCTTCATGCAAATAACCTCCATT 58.728 37.500 0.00 0.00 0.00 3.16
4967 5406 5.721000 TCCTTCATGCAAATAACCTCCATTT 59.279 36.000 0.00 0.00 0.00 2.32
4969 5408 7.398618 TCCTTCATGCAAATAACCTCCATTTTA 59.601 33.333 0.00 0.00 0.00 1.52
4970 5409 8.206189 CCTTCATGCAAATAACCTCCATTTTAT 58.794 33.333 0.00 0.00 0.00 1.40
4971 5410 9.603921 CTTCATGCAAATAACCTCCATTTTATT 57.396 29.630 0.00 0.00 30.69 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 57 8.836268 ATCAACCTTATTAAAGTACACAACGA 57.164 30.769 0.00 0.00 0.00 3.85
58 59 8.456471 GGGATCAACCTTATTAAAGTACACAAC 58.544 37.037 0.00 0.00 38.98 3.32
60 61 7.691213 TGGGATCAACCTTATTAAAGTACACA 58.309 34.615 0.00 0.00 38.98 3.72
61 62 8.747538 ATGGGATCAACCTTATTAAAGTACAC 57.252 34.615 0.00 0.00 38.98 2.90
393 425 7.917505 ACAGAAGTTCAGATTGAAAAACATGTC 59.082 33.333 5.50 0.00 38.22 3.06
587 624 1.102978 CACCCATGGAATTCGAACCC 58.897 55.000 15.22 5.68 0.00 4.11
593 630 1.173043 TCAACGCACCCATGGAATTC 58.827 50.000 15.22 0.00 0.00 2.17
615 660 1.533219 CATAGCCCATCCACCAGCA 59.467 57.895 0.00 0.00 0.00 4.41
750 1000 0.039437 GGAGTGACGCTGACGAGAAA 60.039 55.000 0.00 0.00 43.93 2.52
751 1001 1.170290 TGGAGTGACGCTGACGAGAA 61.170 55.000 0.00 0.00 43.93 2.87
975 1262 2.538760 AGGAACTGGAGGCAGGGA 59.461 61.111 0.00 0.00 37.18 4.20
988 1279 3.063704 CGCCATGGCTTGCAGGAA 61.064 61.111 33.07 0.00 39.32 3.36
1073 1364 1.522569 GGACGTTGATGGGAGGAGG 59.477 63.158 0.00 0.00 0.00 4.30
1124 1415 3.257561 CCAAGACGGCGATGCTCG 61.258 66.667 16.62 0.00 43.89 5.03
1162 1453 0.874390 GCAAACGTCAGATCAGCCAA 59.126 50.000 0.00 0.00 0.00 4.52
1302 1597 1.507974 GATGATCCTCTCGGCGTCGA 61.508 60.000 13.29 13.29 43.86 4.20
1343 1638 1.125711 GGGGGCTGGTATACGGACAT 61.126 60.000 0.00 0.00 33.96 3.06
1344 1639 1.763256 GGGGGCTGGTATACGGACA 60.763 63.158 0.00 0.00 33.96 4.02
1345 1640 1.458967 AGGGGGCTGGTATACGGAC 60.459 63.158 0.00 0.00 0.00 4.79
1395 1690 4.274147 ACAAGATGAGTCTGTATCCGACT 58.726 43.478 0.00 0.00 43.97 4.18
1439 1734 2.034879 CGGGCTCGTTTCTGCATGT 61.035 57.895 0.00 0.00 0.00 3.21
1447 1742 2.920912 TCCACCTCGGGCTCGTTT 60.921 61.111 5.57 0.00 37.69 3.60
1486 1781 2.282040 ACCTTCAGCTGCTGCACC 60.282 61.111 24.38 0.00 42.74 5.01
2038 2333 4.848357 CATACTCCTGACAAGGGAAACAT 58.152 43.478 0.00 0.00 44.62 2.71
2100 2399 7.642194 CACGAAACAAAACTAAATTCAGCACTA 59.358 33.333 0.00 0.00 0.00 2.74
2173 2473 3.432252 CGCGAGACAACAAAGTATTCCTT 59.568 43.478 0.00 0.00 33.79 3.36
2226 2526 4.890581 ACACCACAAAAACTACCATTAGCA 59.109 37.500 0.00 0.00 0.00 3.49
2243 2543 0.956633 TAGAGACACGGACACACCAC 59.043 55.000 0.00 0.00 38.90 4.16
2258 2559 3.170791 ACACGGCATGTCTGAATAGAG 57.829 47.619 0.00 0.00 36.54 2.43
2422 2723 1.520494 GAGAACCCCGAAAAGGACAC 58.480 55.000 0.00 0.00 45.00 3.67
2520 2831 8.230486 CGAAACACAAGTAAATTCAGCTATTCT 58.770 33.333 0.00 0.00 0.00 2.40
2521 2832 7.481798 CCGAAACACAAGTAAATTCAGCTATTC 59.518 37.037 0.00 0.00 0.00 1.75
2522 2833 7.305474 CCGAAACACAAGTAAATTCAGCTATT 58.695 34.615 0.00 0.00 0.00 1.73
2523 2834 6.128007 CCCGAAACACAAGTAAATTCAGCTAT 60.128 38.462 0.00 0.00 0.00 2.97
2525 2836 4.023193 CCCGAAACACAAGTAAATTCAGCT 60.023 41.667 0.00 0.00 0.00 4.24
2526 2837 4.226761 CCCGAAACACAAGTAAATTCAGC 58.773 43.478 0.00 0.00 0.00 4.26
2527 2838 5.432885 ACCCGAAACACAAGTAAATTCAG 57.567 39.130 0.00 0.00 0.00 3.02
2528 2839 6.939132 TTACCCGAAACACAAGTAAATTCA 57.061 33.333 0.00 0.00 0.00 2.57
2529 2840 6.804783 CCATTACCCGAAACACAAGTAAATTC 59.195 38.462 0.00 0.00 0.00 2.17
2530 2841 6.490721 TCCATTACCCGAAACACAAGTAAATT 59.509 34.615 0.00 0.00 0.00 1.82
2531 2842 6.005198 TCCATTACCCGAAACACAAGTAAAT 58.995 36.000 0.00 0.00 0.00 1.40
2532 2843 5.374921 TCCATTACCCGAAACACAAGTAAA 58.625 37.500 0.00 0.00 0.00 2.01
2533 2844 4.970711 TCCATTACCCGAAACACAAGTAA 58.029 39.130 0.00 0.00 0.00 2.24
2534 2845 4.571919 CTCCATTACCCGAAACACAAGTA 58.428 43.478 0.00 0.00 0.00 2.24
2535 2846 3.408634 CTCCATTACCCGAAACACAAGT 58.591 45.455 0.00 0.00 0.00 3.16
2536 2847 2.161609 GCTCCATTACCCGAAACACAAG 59.838 50.000 0.00 0.00 0.00 3.16
2537 2848 2.156098 GCTCCATTACCCGAAACACAA 58.844 47.619 0.00 0.00 0.00 3.33
2538 2849 1.612199 GGCTCCATTACCCGAAACACA 60.612 52.381 0.00 0.00 0.00 3.72
2539 2850 1.092348 GGCTCCATTACCCGAAACAC 58.908 55.000 0.00 0.00 0.00 3.32
2540 2851 0.693622 TGGCTCCATTACCCGAAACA 59.306 50.000 0.00 0.00 0.00 2.83
2541 2852 1.947456 GATGGCTCCATTACCCGAAAC 59.053 52.381 2.53 0.00 36.70 2.78
2542 2853 1.474320 CGATGGCTCCATTACCCGAAA 60.474 52.381 2.53 0.00 36.70 3.46
2543 2854 0.105964 CGATGGCTCCATTACCCGAA 59.894 55.000 2.53 0.00 36.70 4.30
2544 2855 0.757561 TCGATGGCTCCATTACCCGA 60.758 55.000 2.53 4.79 36.70 5.14
2545 2856 0.600255 GTCGATGGCTCCATTACCCG 60.600 60.000 2.53 2.48 36.70 5.28
2546 2857 0.468226 TGTCGATGGCTCCATTACCC 59.532 55.000 2.53 0.00 36.70 3.69
2547 2858 2.325583 TTGTCGATGGCTCCATTACC 57.674 50.000 2.53 0.00 36.70 2.85
2548 2859 2.808543 GGATTGTCGATGGCTCCATTAC 59.191 50.000 2.53 5.77 36.70 1.89
2549 2860 2.705658 AGGATTGTCGATGGCTCCATTA 59.294 45.455 2.53 0.00 36.70 1.90
2550 2861 1.492176 AGGATTGTCGATGGCTCCATT 59.508 47.619 2.53 0.00 36.70 3.16
2551 2862 1.135094 AGGATTGTCGATGGCTCCAT 58.865 50.000 0.14 0.14 39.69 3.41
2552 2863 0.178767 CAGGATTGTCGATGGCTCCA 59.821 55.000 8.41 0.00 0.00 3.86
2553 2864 1.162800 GCAGGATTGTCGATGGCTCC 61.163 60.000 0.00 0.00 0.00 4.70
2554 2865 0.462581 TGCAGGATTGTCGATGGCTC 60.463 55.000 0.00 0.00 0.00 4.70
2555 2866 0.035152 TTGCAGGATTGTCGATGGCT 60.035 50.000 0.00 0.00 0.00 4.75
2556 2867 0.810648 TTTGCAGGATTGTCGATGGC 59.189 50.000 0.00 0.00 0.00 4.40
2557 2868 3.129113 TGAATTTGCAGGATTGTCGATGG 59.871 43.478 2.52 0.00 0.00 3.51
2558 2869 4.348656 CTGAATTTGCAGGATTGTCGATG 58.651 43.478 2.52 0.00 32.26 3.84
2559 2870 3.181493 GCTGAATTTGCAGGATTGTCGAT 60.181 43.478 2.52 0.00 36.41 3.59
2560 2871 2.162208 GCTGAATTTGCAGGATTGTCGA 59.838 45.455 2.52 0.00 36.41 4.20
2561 2872 2.163010 AGCTGAATTTGCAGGATTGTCG 59.837 45.455 2.52 0.00 36.41 4.35
2562 2873 3.863142 AGCTGAATTTGCAGGATTGTC 57.137 42.857 2.52 0.00 36.41 3.18
2563 2874 5.655532 AGAATAGCTGAATTTGCAGGATTGT 59.344 36.000 0.00 1.14 36.41 2.71
2564 2875 6.145338 AGAATAGCTGAATTTGCAGGATTG 57.855 37.500 0.00 0.00 36.41 2.67
2565 2876 7.013083 CACTAGAATAGCTGAATTTGCAGGATT 59.987 37.037 0.00 0.00 44.39 3.01
2566 2877 6.485984 CACTAGAATAGCTGAATTTGCAGGAT 59.514 38.462 0.00 0.00 44.39 3.24
2567 2878 5.819379 CACTAGAATAGCTGAATTTGCAGGA 59.181 40.000 0.00 0.00 44.39 3.86
2568 2879 5.008415 CCACTAGAATAGCTGAATTTGCAGG 59.992 44.000 0.00 0.00 44.39 4.85
2569 2880 5.819379 TCCACTAGAATAGCTGAATTTGCAG 59.181 40.000 0.00 0.00 44.39 4.41
2570 2881 5.744171 TCCACTAGAATAGCTGAATTTGCA 58.256 37.500 0.00 0.00 44.39 4.08
2571 2882 6.051717 TCTCCACTAGAATAGCTGAATTTGC 58.948 40.000 0.00 0.00 44.39 3.68
2572 2883 7.011857 GGTTCTCCACTAGAATAGCTGAATTTG 59.988 40.741 0.00 0.00 45.84 2.32
2573 2884 7.051000 GGTTCTCCACTAGAATAGCTGAATTT 58.949 38.462 0.00 0.00 45.84 1.82
2574 2885 6.408662 GGGTTCTCCACTAGAATAGCTGAATT 60.409 42.308 0.00 0.00 45.84 2.17
2575 2886 5.071115 GGGTTCTCCACTAGAATAGCTGAAT 59.929 44.000 0.00 0.00 45.84 2.57
2576 2887 4.406003 GGGTTCTCCACTAGAATAGCTGAA 59.594 45.833 0.00 0.00 45.84 3.02
2577 2888 3.961408 GGGTTCTCCACTAGAATAGCTGA 59.039 47.826 0.00 0.00 45.84 4.26
2578 2889 3.070302 GGGGTTCTCCACTAGAATAGCTG 59.930 52.174 0.00 0.00 45.84 4.24
2579 2890 3.310193 GGGGTTCTCCACTAGAATAGCT 58.690 50.000 0.00 0.00 45.84 3.32
2580 2891 2.036089 CGGGGTTCTCCACTAGAATAGC 59.964 54.545 0.00 0.00 45.84 2.97
2581 2892 3.563223 TCGGGGTTCTCCACTAGAATAG 58.437 50.000 0.00 0.00 45.84 1.73
2582 2893 3.675348 TCGGGGTTCTCCACTAGAATA 57.325 47.619 0.00 0.00 45.84 1.75
2583 2894 2.544844 TCGGGGTTCTCCACTAGAAT 57.455 50.000 0.00 0.00 45.84 2.40
2584 2895 2.544844 ATCGGGGTTCTCCACTAGAA 57.455 50.000 0.00 0.00 42.07 2.10
2585 2896 2.158505 CCTATCGGGGTTCTCCACTAGA 60.159 54.545 0.00 0.00 34.37 2.43
2586 2897 2.240279 CCTATCGGGGTTCTCCACTAG 58.760 57.143 0.00 0.00 34.37 2.57
2587 2898 1.572415 ACCTATCGGGGTTCTCCACTA 59.428 52.381 0.00 0.00 40.03 2.74
2588 2899 0.338814 ACCTATCGGGGTTCTCCACT 59.661 55.000 0.00 0.00 40.03 4.00
2589 2900 1.134491 CAACCTATCGGGGTTCTCCAC 60.134 57.143 5.62 0.00 46.58 4.02
2590 2901 1.200519 CAACCTATCGGGGTTCTCCA 58.799 55.000 5.62 0.00 46.58 3.86
2591 2902 0.468648 CCAACCTATCGGGGTTCTCC 59.531 60.000 5.62 0.00 46.58 3.71
2592 2903 0.179054 GCCAACCTATCGGGGTTCTC 60.179 60.000 5.62 0.00 46.58 2.87
2593 2904 1.912971 GCCAACCTATCGGGGTTCT 59.087 57.895 5.62 0.00 46.58 3.01
2594 2905 1.523032 CGCCAACCTATCGGGGTTC 60.523 63.158 5.62 0.00 46.58 3.62
2596 2907 4.171103 GCGCCAACCTATCGGGGT 62.171 66.667 0.00 0.00 42.05 4.95
2597 2908 4.169696 TGCGCCAACCTATCGGGG 62.170 66.667 4.18 0.00 40.03 5.73
2598 2909 2.588877 CTGCGCCAACCTATCGGG 60.589 66.667 4.18 0.00 41.89 5.14
2599 2910 2.383245 ATCCTGCGCCAACCTATCGG 62.383 60.000 4.18 0.00 0.00 4.18
2600 2911 0.532862 AATCCTGCGCCAACCTATCG 60.533 55.000 4.18 0.00 0.00 2.92
2601 2912 0.947244 CAATCCTGCGCCAACCTATC 59.053 55.000 4.18 0.00 0.00 2.08
2602 2913 0.255890 ACAATCCTGCGCCAACCTAT 59.744 50.000 4.18 0.00 0.00 2.57
2603 2914 0.906066 TACAATCCTGCGCCAACCTA 59.094 50.000 4.18 0.00 0.00 3.08
2604 2915 0.255890 ATACAATCCTGCGCCAACCT 59.744 50.000 4.18 0.00 0.00 3.50
2605 2916 0.381801 CATACAATCCTGCGCCAACC 59.618 55.000 4.18 0.00 0.00 3.77
2606 2917 0.381801 CCATACAATCCTGCGCCAAC 59.618 55.000 4.18 0.00 0.00 3.77
2607 2918 1.383456 GCCATACAATCCTGCGCCAA 61.383 55.000 4.18 0.00 0.00 4.52
2608 2919 1.823470 GCCATACAATCCTGCGCCA 60.823 57.895 4.18 0.00 0.00 5.69
2609 2920 2.555547 GGCCATACAATCCTGCGCC 61.556 63.158 4.18 0.00 0.00 6.53
2610 2921 1.174712 ATGGCCATACAATCCTGCGC 61.175 55.000 19.18 0.00 0.00 6.09
2611 2922 2.183478 TATGGCCATACAATCCTGCG 57.817 50.000 21.94 0.00 0.00 5.18
2612 2923 3.490348 AGTTATGGCCATACAATCCTGC 58.510 45.455 25.39 8.00 0.00 4.85
2613 2924 6.114187 TCTAGTTATGGCCATACAATCCTG 57.886 41.667 25.39 11.43 0.00 3.86
2614 2925 6.763715 TTCTAGTTATGGCCATACAATCCT 57.236 37.500 25.39 16.50 0.00 3.24
2615 2926 7.281100 GCTATTCTAGTTATGGCCATACAATCC 59.719 40.741 25.39 10.56 0.00 3.01
2616 2927 8.043710 AGCTATTCTAGTTATGGCCATACAATC 58.956 37.037 25.39 14.91 30.60 2.67
2617 2928 7.826252 CAGCTATTCTAGTTATGGCCATACAAT 59.174 37.037 25.39 17.88 30.60 2.71
2618 2929 7.016170 TCAGCTATTCTAGTTATGGCCATACAA 59.984 37.037 25.39 11.09 30.60 2.41
2619 2930 6.496911 TCAGCTATTCTAGTTATGGCCATACA 59.503 38.462 25.39 13.42 30.60 2.29
2642 2953 3.876341 ACCCGAAACACAAGTAAGTTCA 58.124 40.909 0.00 0.00 0.00 3.18
2646 2957 4.998672 TCCATTACCCGAAACACAAGTAAG 59.001 41.667 0.00 0.00 0.00 2.34
2666 2988 2.013563 GCAAGATTGTCGATGGCTCCA 61.014 52.381 0.00 0.00 0.00 3.86
2683 3005 5.476599 ACTGGCTAAGACATAACATTTGCAA 59.523 36.000 0.00 0.00 0.00 4.08
2700 3022 3.188159 ACGACAAAGTTTCACTGGCTA 57.812 42.857 0.00 0.00 0.00 3.93
2704 3026 4.600012 ACAGAACGACAAAGTTTCACTG 57.400 40.909 0.00 0.00 34.00 3.66
2751 3073 4.684703 GGTTTTACACGCGATAGAGCATAT 59.315 41.667 15.93 0.00 40.72 1.78
2817 3139 6.531503 TCTCAAGAAGTCGTTTCCTATCAT 57.468 37.500 0.02 0.00 36.40 2.45
2833 3155 7.013178 TGCGATGCCATAAAAATATTCTCAAGA 59.987 33.333 0.00 0.00 0.00 3.02
2885 3234 8.978539 CGCATGTTGATACACATAAGTATACTT 58.021 33.333 21.35 21.35 35.51 2.24
2886 3235 7.598869 CCGCATGTTGATACACATAAGTATACT 59.401 37.037 0.00 0.00 35.51 2.12
2887 3236 7.621426 GCCGCATGTTGATACACATAAGTATAC 60.621 40.741 0.00 0.00 35.51 1.47
2888 3237 6.367695 GCCGCATGTTGATACACATAAGTATA 59.632 38.462 0.00 0.00 35.51 1.47
2889 3238 5.179368 GCCGCATGTTGATACACATAAGTAT 59.821 40.000 0.00 0.00 35.51 2.12
2890 3239 4.509970 GCCGCATGTTGATACACATAAGTA 59.490 41.667 0.00 0.00 35.51 2.24
2891 3240 3.312421 GCCGCATGTTGATACACATAAGT 59.688 43.478 0.00 0.00 35.51 2.24
2892 3241 3.312146 TGCCGCATGTTGATACACATAAG 59.688 43.478 0.00 0.00 35.51 1.73
2893 3242 3.274288 TGCCGCATGTTGATACACATAA 58.726 40.909 0.00 0.00 35.51 1.90
2894 3243 2.871633 CTGCCGCATGTTGATACACATA 59.128 45.455 0.00 0.00 35.51 2.29
2895 3244 1.672363 CTGCCGCATGTTGATACACAT 59.328 47.619 0.00 0.00 37.93 3.21
2896 3245 1.085893 CTGCCGCATGTTGATACACA 58.914 50.000 0.00 0.00 37.03 3.72
2897 3246 1.086696 ACTGCCGCATGTTGATACAC 58.913 50.000 0.00 0.00 37.03 2.90
2898 3247 1.085893 CACTGCCGCATGTTGATACA 58.914 50.000 0.00 0.00 38.95 2.29
2944 3293 6.585322 GTCAAAAAGAGCAAGATCAGGAAATG 59.415 38.462 0.00 0.00 0.00 2.32
3412 3768 7.998383 TGGAATAATGCAAATATACCTGTGTCT 59.002 33.333 0.00 0.00 0.00 3.41
3514 3874 2.975489 AGCATAGGGACATAAGGGACTG 59.025 50.000 0.00 0.00 40.86 3.51
3603 3963 9.440784 TCAACGACAACAAAGAATACAATTAAC 57.559 29.630 0.00 0.00 0.00 2.01
3647 4008 2.614057 AGTGCTCGAGAAACAAAACAGG 59.386 45.455 18.75 0.00 0.00 4.00
3684 4045 2.573340 GGCCCAATTGGACTTGCG 59.427 61.111 26.60 8.90 40.11 4.85
3712 4073 8.514594 ACATGTGATGACGAAATTAAGAACAAT 58.485 29.630 0.00 0.00 0.00 2.71
3952 4313 1.837439 CCTACTTAGGACCACATGCCA 59.163 52.381 0.00 0.00 46.63 4.92
4186 4547 4.450053 CAACAACCAACCAACATCCAAAT 58.550 39.130 0.00 0.00 0.00 2.32
4188 4549 2.169352 CCAACAACCAACCAACATCCAA 59.831 45.455 0.00 0.00 0.00 3.53
4221 4588 9.482627 GAGAGAGAGAGAGAGAGAATAACTTAG 57.517 40.741 0.00 0.00 0.00 2.18
4382 4799 5.947228 TCAGACTGCAAAGGAATGTTTAG 57.053 39.130 0.00 0.00 0.00 1.85
4391 4809 5.443185 TTGAAGATTTCAGACTGCAAAGG 57.557 39.130 0.00 0.00 41.38 3.11
4423 4841 1.068741 CCTCCGCCTCCACACTTATAC 59.931 57.143 0.00 0.00 0.00 1.47
4451 4869 3.310288 CCCCTCCTCTACTTCTTTCTCCT 60.310 52.174 0.00 0.00 0.00 3.69
4463 4881 2.382305 TCTCTGTTTCACCCCTCCTCTA 59.618 50.000 0.00 0.00 0.00 2.43
4606 5038 6.013379 CCTAGAGAATCAGGTTCCAGCTATA 58.987 44.000 0.00 0.00 37.56 1.31
4687 5119 8.499162 GCAACTATAAAAGAGCGATGAACATAT 58.501 33.333 0.00 0.00 0.00 1.78
4688 5120 7.494298 TGCAACTATAAAAGAGCGATGAACATA 59.506 33.333 0.00 0.00 34.11 2.29
4695 5127 5.447279 CGGTTTGCAACTATAAAAGAGCGAT 60.447 40.000 0.00 0.00 34.11 4.58
4769 5201 1.351683 TGGCCGTATGGGTTACAACTT 59.648 47.619 2.41 0.00 38.44 2.66
4775 5207 1.473610 CGAACATGGCCGTATGGGTTA 60.474 52.381 0.00 0.00 38.44 2.85
4798 5230 1.928706 TTGGCGGCCGATAAAAGCAC 61.929 55.000 33.48 7.28 0.00 4.40
4799 5231 1.653094 CTTGGCGGCCGATAAAAGCA 61.653 55.000 33.48 1.36 0.00 3.91
4843 5275 3.140144 TGGAAAAACAAGGAGACCAGGAT 59.860 43.478 0.00 0.00 0.00 3.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.