Multiple sequence alignment - TraesCS4A01G302100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G302100 chr4A 100.000 3279 0 0 1 3279 598733038 598729760 0.000000e+00 6056.0
1 TraesCS4A01G302100 chr4B 90.210 1430 70 27 781 2172 7832111 7830714 0.000000e+00 1801.0
2 TraesCS4A01G302100 chr4B 86.578 529 29 20 2490 3010 7830298 7829804 2.220000e-151 545.0
3 TraesCS4A01G302100 chr4B 84.146 82 2 5 2382 2463 7830471 7830401 5.870000e-08 69.4
4 TraesCS4A01G302100 chr4D 92.481 1197 43 20 1091 2266 4800296 4799126 0.000000e+00 1668.0
5 TraesCS4A01G302100 chr4D 83.401 735 73 21 1 706 4802890 4802176 1.280000e-178 636.0
6 TraesCS4A01G302100 chr4D 82.184 696 46 26 2270 2920 4799091 4798429 8.060000e-146 527.0
7 TraesCS4A01G302100 chr4D 92.333 300 20 3 764 1062 4800590 4800293 1.090000e-114 424.0
8 TraesCS4A01G302100 chr4D 87.037 216 22 4 3065 3279 4798226 4798016 4.230000e-59 239.0
9 TraesCS4A01G302100 chr6B 94.444 486 23 4 1676 2161 134669898 134670379 0.000000e+00 745.0
10 TraesCS4A01G302100 chr3A 94.737 38 1 1 709 745 264718161 264718124 1.270000e-04 58.4
11 TraesCS4A01G302100 chr2A 94.595 37 2 0 709 745 10993626 10993662 1.270000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G302100 chr4A 598729760 598733038 3278 True 6056.000000 6056 100.0000 1 3279 1 chr4A.!!$R1 3278
1 TraesCS4A01G302100 chr4B 7829804 7832111 2307 True 805.133333 1801 86.9780 781 3010 3 chr4B.!!$R1 2229
2 TraesCS4A01G302100 chr4D 4798016 4802890 4874 True 698.800000 1668 87.4872 1 3279 5 chr4D.!!$R1 3278

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
466 470 0.037697 CAGGGGTGACATCGACGAAA 60.038 55.0 0.0 0.0 0.0 3.46 F
794 2352 0.178981 ACATGTGCAGCAGTCCCTTT 60.179 50.0 0.0 0.0 0.0 3.11 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2268 3937 1.003233 AGGGACGGGATCTTTGTCAAC 59.997 52.381 12.34 6.61 34.32 3.18 R
2463 4145 1.234615 CCGCCCAAACACACTACTGG 61.235 60.000 0.00 0.00 0.00 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 1.282570 CACGAAAGCGGCACACAAT 59.717 52.632 1.45 0.00 43.17 2.71
30 31 0.515127 CACGAAAGCGGCACACAATA 59.485 50.000 1.45 0.00 43.17 1.90
51 52 2.358737 GCTTAGGCGTGCACCACT 60.359 61.111 12.15 12.07 31.34 4.00
57 58 2.031163 GCGTGCACCACTTCCTCT 59.969 61.111 12.15 0.00 31.34 3.69
59 60 1.069765 CGTGCACCACTTCCTCTGT 59.930 57.895 12.15 0.00 31.34 3.41
70 71 1.833630 CTTCCTCTGTGGTGGCAGATA 59.166 52.381 0.00 0.00 43.61 1.98
71 72 2.180946 TCCTCTGTGGTGGCAGATAT 57.819 50.000 0.00 0.00 43.61 1.63
107 108 0.659427 CCCACTGCGACATTGCATAG 59.341 55.000 0.00 0.00 45.26 2.23
113 114 1.154205 GCGACATTGCATAGCTCCGT 61.154 55.000 0.00 0.00 34.15 4.69
115 116 1.802508 CGACATTGCATAGCTCCGTCA 60.803 52.381 0.00 0.00 0.00 4.35
130 131 1.380403 CGTCACAAACTTGCCCCACA 61.380 55.000 0.00 0.00 0.00 4.17
131 132 0.820871 GTCACAAACTTGCCCCACAA 59.179 50.000 0.00 0.00 36.62 3.33
132 133 0.820871 TCACAAACTTGCCCCACAAC 59.179 50.000 0.00 0.00 33.68 3.32
159 160 1.201647 CAGACGTCATGGTACTTCGGT 59.798 52.381 19.50 0.00 0.00 4.69
169 170 1.968017 TACTTCGGTGGCGACGACT 60.968 57.895 0.65 0.00 40.45 4.18
178 179 2.391821 GCGACGACTGTTGCGATG 59.608 61.111 13.51 0.37 45.17 3.84
180 181 1.886861 GCGACGACTGTTGCGATGTT 61.887 55.000 13.51 0.00 45.17 2.71
181 182 0.179275 CGACGACTGTTGCGATGTTG 60.179 55.000 0.00 0.00 0.00 3.33
182 183 0.163788 GACGACTGTTGCGATGTTGG 59.836 55.000 0.00 0.00 0.00 3.77
184 185 1.154413 GACTGTTGCGATGTTGGCG 60.154 57.895 0.00 0.00 0.00 5.69
203 204 2.737830 GGGAGCTCGGGTAGATGC 59.262 66.667 7.83 0.00 0.00 3.91
227 228 2.669569 GGCTCGAAGCTGCAACCA 60.670 61.111 1.02 0.00 41.99 3.67
228 229 2.260869 GGCTCGAAGCTGCAACCAA 61.261 57.895 1.02 0.00 41.99 3.67
245 246 0.040425 CAAGAACGAAACTTGGGGCG 60.040 55.000 0.00 0.00 40.39 6.13
256 258 2.830704 CTTGGGGCGACGGTAGTGTC 62.831 65.000 0.00 0.00 35.49 3.67
260 262 2.181021 GCGACGGTAGTGTCAGGG 59.819 66.667 0.00 0.00 38.84 4.45
294 296 3.063084 GACTCAGGGAGACGCGGT 61.063 66.667 12.47 0.00 33.32 5.68
314 316 2.471743 GTGTCGAAGTCAAAGAAGACGG 59.528 50.000 0.00 0.00 43.24 4.79
315 317 2.100252 TGTCGAAGTCAAAGAAGACGGT 59.900 45.455 0.00 0.00 43.24 4.83
316 318 2.471743 GTCGAAGTCAAAGAAGACGGTG 59.528 50.000 0.00 0.00 43.24 4.94
324 326 2.046217 GAAGACGGTGGGAAGGGC 60.046 66.667 0.00 0.00 0.00 5.19
377 379 0.107459 GGGAGATGGTGGAGCTTGAC 60.107 60.000 0.00 0.00 0.00 3.18
383 386 2.426023 GTGGAGCTTGACCGTGGT 59.574 61.111 0.00 0.00 0.00 4.16
401 404 2.086054 GTCGTGACCTCAAGCTTGAT 57.914 50.000 28.57 15.83 36.46 2.57
410 413 1.064654 CTCAAGCTTGATAAAGGCGGC 59.935 52.381 28.57 0.00 36.46 6.53
438 442 2.420043 CGAATCGGTGGCGGGTAT 59.580 61.111 0.00 0.00 0.00 2.73
440 444 2.203153 AATCGGTGGCGGGTATGC 60.203 61.111 0.00 0.00 0.00 3.14
460 464 0.530650 CCGAATCAGGGGTGACATCG 60.531 60.000 5.77 5.77 33.23 3.84
461 465 0.459899 CGAATCAGGGGTGACATCGA 59.540 55.000 6.58 0.00 34.47 3.59
463 467 0.175760 AATCAGGGGTGACATCGACG 59.824 55.000 0.00 0.00 0.00 5.12
465 469 0.896479 TCAGGGGTGACATCGACGAA 60.896 55.000 0.00 0.00 0.00 3.85
466 470 0.037697 CAGGGGTGACATCGACGAAA 60.038 55.000 0.00 0.00 0.00 3.46
467 471 0.682852 AGGGGTGACATCGACGAAAA 59.317 50.000 0.00 0.00 0.00 2.29
468 472 1.278127 AGGGGTGACATCGACGAAAAT 59.722 47.619 0.00 0.00 0.00 1.82
469 473 1.396996 GGGGTGACATCGACGAAAATG 59.603 52.381 0.00 0.00 0.00 2.32
470 474 1.396996 GGGTGACATCGACGAAAATGG 59.603 52.381 0.00 0.00 0.00 3.16
471 475 2.343101 GGTGACATCGACGAAAATGGA 58.657 47.619 0.00 0.00 0.00 3.41
472 476 2.936498 GGTGACATCGACGAAAATGGAT 59.064 45.455 0.00 0.00 0.00 3.41
473 477 3.242413 GGTGACATCGACGAAAATGGATG 60.242 47.826 0.00 0.00 39.83 3.51
474 478 2.351418 TGACATCGACGAAAATGGATGC 59.649 45.455 0.00 0.00 38.10 3.91
475 479 2.351418 GACATCGACGAAAATGGATGCA 59.649 45.455 0.00 0.00 38.10 3.96
476 480 2.095853 ACATCGACGAAAATGGATGCAC 59.904 45.455 0.00 0.00 38.10 4.57
477 481 0.718904 TCGACGAAAATGGATGCACG 59.281 50.000 0.00 0.00 0.00 5.34
478 482 0.247655 CGACGAAAATGGATGCACGG 60.248 55.000 0.00 0.00 0.00 4.94
479 483 0.523335 GACGAAAATGGATGCACGGC 60.523 55.000 0.00 0.00 0.00 5.68
480 484 1.583451 CGAAAATGGATGCACGGCG 60.583 57.895 4.80 4.80 0.00 6.46
481 485 1.226660 GAAAATGGATGCACGGCGG 60.227 57.895 13.24 0.66 0.00 6.13
482 486 3.355203 AAAATGGATGCACGGCGGC 62.355 57.895 13.24 12.77 0.00 6.53
507 512 1.303806 TAAGGTTTTGGGAGGCGGC 60.304 57.895 0.00 0.00 0.00 6.53
522 527 1.789078 GCGGCGTCGGGTTCTATAGA 61.789 60.000 13.05 0.00 36.79 1.98
567 597 1.187087 CCACAGTCAGTAGTCTCCCC 58.813 60.000 0.00 0.00 0.00 4.81
570 600 1.429687 ACAGTCAGTAGTCTCCCCACT 59.570 52.381 0.00 0.00 0.00 4.00
576 606 3.326880 TCAGTAGTCTCCCCACTTTTTCC 59.673 47.826 0.00 0.00 0.00 3.13
582 612 4.079154 AGTCTCCCCACTTTTTCCTTTTCT 60.079 41.667 0.00 0.00 0.00 2.52
598 628 9.753674 TTTCCTTTTCTAAGAATACATCACCAT 57.246 29.630 0.00 0.00 32.92 3.55
641 671 3.430042 AGAGAGCAAACATGGACACAT 57.570 42.857 0.00 0.00 37.99 3.21
644 674 4.002982 GAGAGCAAACATGGACACATACA 58.997 43.478 0.00 0.00 34.99 2.29
646 676 4.637534 AGAGCAAACATGGACACATACATC 59.362 41.667 0.00 0.00 34.99 3.06
706 736 6.426646 AGATATCAGTTAAGCCCTCGAAAT 57.573 37.500 5.32 0.00 0.00 2.17
707 737 6.831976 AGATATCAGTTAAGCCCTCGAAATT 58.168 36.000 5.32 0.00 0.00 1.82
719 766 2.418746 CCTCGAAATTCCTCCGTCACAT 60.419 50.000 0.00 0.00 0.00 3.21
730 777 9.877178 AATTCCTCCGTCACATAATATAAGATC 57.123 33.333 0.00 0.00 0.00 2.75
736 783 9.188588 TCCGTCACATAATATAAGATCGTTTTC 57.811 33.333 0.00 0.00 0.00 2.29
737 784 8.154038 CCGTCACATAATATAAGATCGTTTTCG 58.846 37.037 0.00 0.00 45.64 3.46
755 802 5.573337 TTTCGAAGCTAACTAGGGAGTAC 57.427 43.478 0.00 0.00 33.58 2.73
757 804 5.620738 TCGAAGCTAACTAGGGAGTACTA 57.379 43.478 0.00 0.00 33.58 1.82
758 805 5.609423 TCGAAGCTAACTAGGGAGTACTAG 58.391 45.833 0.00 0.00 44.71 2.57
779 2337 4.517285 AGTTTGGTACTAGCCATGACATG 58.483 43.478 8.56 8.56 38.48 3.21
794 2352 0.178981 ACATGTGCAGCAGTCCCTTT 60.179 50.000 0.00 0.00 0.00 3.11
813 2371 2.967599 TGACGTTGAGAGATCATGGG 57.032 50.000 0.00 0.00 0.00 4.00
815 2373 1.482593 GACGTTGAGAGATCATGGGGT 59.517 52.381 0.00 0.00 0.00 4.95
827 2391 5.558818 AGATCATGGGGTAGTACGTACTAG 58.441 45.833 30.82 19.62 39.29 2.57
828 2392 4.090761 TCATGGGGTAGTACGTACTAGG 57.909 50.000 30.82 16.40 39.29 3.02
829 2393 3.716353 TCATGGGGTAGTACGTACTAGGA 59.284 47.826 30.82 18.27 39.29 2.94
830 2394 3.560636 TGGGGTAGTACGTACTAGGAC 57.439 52.381 30.82 22.91 39.29 3.85
832 2396 3.206964 GGGGTAGTACGTACTAGGACAC 58.793 54.545 30.82 23.81 39.29 3.67
856 2420 6.725834 ACTGTTAATGTCATGGAAATTCCCTT 59.274 34.615 9.87 0.00 35.03 3.95
890 2454 4.640201 TGGCTGCCTCTAATCAATAAACAC 59.360 41.667 21.03 0.00 0.00 3.32
962 2526 3.127533 CGGCAGCTTTCCTTCCCG 61.128 66.667 0.00 0.00 0.00 5.14
1043 2622 4.500035 CGTGAGATTTTCTCCTAGCTACCC 60.500 50.000 2.26 0.00 42.73 3.69
1094 2675 4.577246 GCGAGTGCTAGCCTCCGG 62.577 72.222 20.71 0.00 38.39 5.14
1228 2813 4.908877 GTCTACCGGCTCGCGCTC 62.909 72.222 5.56 0.00 36.09 5.03
1287 2872 4.742201 CCGCTCCGTGGTCACCAG 62.742 72.222 0.00 0.00 32.34 4.00
1289 2874 4.314440 GCTCCGTGGTCACCAGCA 62.314 66.667 0.00 0.00 35.14 4.41
1290 2875 2.357517 CTCCGTGGTCACCAGCAC 60.358 66.667 0.00 0.00 45.94 4.40
1291 2876 3.883744 CTCCGTGGTCACCAGCACC 62.884 68.421 0.00 0.00 46.58 5.01
1357 2942 2.579738 GTCGAGGAAGTCCAGGCC 59.420 66.667 0.00 0.00 38.89 5.19
1373 2958 3.710722 CCGAGGCCTCCAGCAACT 61.711 66.667 27.20 0.00 46.50 3.16
1375 2960 2.125350 GAGGCCTCCAGCAACTCG 60.125 66.667 23.19 0.00 46.50 4.18
1906 3515 1.519455 CGTGGACGGGAAGAGCATC 60.519 63.158 0.00 0.00 35.37 3.91
2190 3820 4.634443 CCGCCAAGTTGTTATTACTAGCTT 59.366 41.667 1.45 0.00 0.00 3.74
2191 3821 5.813672 CCGCCAAGTTGTTATTACTAGCTTA 59.186 40.000 1.45 0.00 0.00 3.09
2192 3822 6.018994 CCGCCAAGTTGTTATTACTAGCTTAG 60.019 42.308 1.45 0.00 0.00 2.18
2193 3823 6.509677 CGCCAAGTTGTTATTACTAGCTTAGC 60.510 42.308 1.45 0.00 0.00 3.09
2194 3824 6.539103 GCCAAGTTGTTATTACTAGCTTAGCT 59.461 38.462 12.67 12.67 43.41 3.32
2195 3825 7.466050 GCCAAGTTGTTATTACTAGCTTAGCTG 60.466 40.741 17.97 9.36 40.10 4.24
2196 3826 7.549488 CCAAGTTGTTATTACTAGCTTAGCTGT 59.451 37.037 17.97 14.57 40.10 4.40
2197 3827 9.582431 CAAGTTGTTATTACTAGCTTAGCTGTA 57.418 33.333 17.97 13.60 40.10 2.74
2245 3880 1.379977 TCGCCGTGATTCTCCCTCT 60.380 57.895 0.00 0.00 0.00 3.69
2247 3882 1.522580 GCCGTGATTCTCCCTCTGC 60.523 63.158 0.00 0.00 0.00 4.26
2260 3898 1.021202 CCTCTGCCGAACACACAAAA 58.979 50.000 0.00 0.00 0.00 2.44
2268 3937 3.181535 GCCGAACACACAAAACAAAACAG 60.182 43.478 0.00 0.00 0.00 3.16
2299 3968 2.126189 CGTCCCTTTCCCGACGTC 60.126 66.667 5.18 5.18 45.20 4.34
2312 3985 2.223409 CCCGACGTCGATAGTTCATCAA 60.223 50.000 37.65 0.00 43.02 2.57
2319 3992 7.408395 CGACGTCGATAGTTCATCAAATCATAC 60.408 40.741 33.35 0.00 43.02 2.39
2334 4007 4.795970 ATCATACGGCGATTTGACTTTC 57.204 40.909 16.62 0.00 0.00 2.62
2335 4008 3.591023 TCATACGGCGATTTGACTTTCA 58.409 40.909 16.62 0.00 0.00 2.69
2336 4009 4.188462 TCATACGGCGATTTGACTTTCAT 58.812 39.130 16.62 0.00 0.00 2.57
2337 4010 2.900122 ACGGCGATTTGACTTTCATG 57.100 45.000 16.62 0.00 0.00 3.07
2338 4011 1.468520 ACGGCGATTTGACTTTCATGG 59.531 47.619 16.62 0.00 0.00 3.66
2340 4013 1.474077 GGCGATTTGACTTTCATGGCT 59.526 47.619 0.00 0.00 0.00 4.75
2343 4021 2.223112 CGATTTGACTTTCATGGCTCCG 60.223 50.000 0.00 0.00 0.00 4.63
2346 4024 2.787473 TGACTTTCATGGCTCCGATT 57.213 45.000 0.00 0.00 0.00 3.34
2347 4025 2.358957 TGACTTTCATGGCTCCGATTG 58.641 47.619 0.00 0.00 0.00 2.67
2360 4038 3.484229 GCTCCGATTGAATCAACAACGAG 60.484 47.826 16.14 11.46 32.50 4.18
2361 4039 3.920446 TCCGATTGAATCAACAACGAGA 58.080 40.909 16.14 10.82 32.50 4.04
2366 4044 4.668576 TTGAATCAACAACGAGATCAGC 57.331 40.909 0.00 0.00 0.00 4.26
2367 4045 3.663025 TGAATCAACAACGAGATCAGCA 58.337 40.909 0.00 0.00 0.00 4.41
2368 4046 4.256110 TGAATCAACAACGAGATCAGCAT 58.744 39.130 0.00 0.00 0.00 3.79
2369 4047 4.330894 TGAATCAACAACGAGATCAGCATC 59.669 41.667 0.00 0.00 0.00 3.91
2370 4048 3.317603 TCAACAACGAGATCAGCATCA 57.682 42.857 0.00 0.00 0.00 3.07
2371 4049 2.995939 TCAACAACGAGATCAGCATCAC 59.004 45.455 0.00 0.00 0.00 3.06
2372 4050 2.738314 CAACAACGAGATCAGCATCACA 59.262 45.455 0.00 0.00 0.00 3.58
2373 4051 2.341257 ACAACGAGATCAGCATCACAC 58.659 47.619 0.00 0.00 0.00 3.82
2374 4052 2.289010 ACAACGAGATCAGCATCACACA 60.289 45.455 0.00 0.00 0.00 3.72
2375 4053 2.934553 CAACGAGATCAGCATCACACAT 59.065 45.455 0.00 0.00 0.00 3.21
2380 4058 4.791676 CGAGATCAGCATCACACATTTTTG 59.208 41.667 0.00 0.00 0.00 2.44
2410 4088 2.692557 ACCAGATCGACAAGGAGATCAG 59.307 50.000 5.92 0.50 44.10 2.90
2424 4102 1.085091 GATCAGCATCGGCATCATCC 58.915 55.000 0.00 0.00 44.61 3.51
2463 4145 2.945668 AGCTTCCAAATGGCGTAGATTC 59.054 45.455 0.00 0.00 34.44 2.52
2464 4146 2.033424 GCTTCCAAATGGCGTAGATTCC 59.967 50.000 0.00 0.00 34.44 3.01
2465 4147 3.278574 CTTCCAAATGGCGTAGATTCCA 58.721 45.455 0.00 0.00 36.70 3.53
2466 4148 2.917933 TCCAAATGGCGTAGATTCCAG 58.082 47.619 0.00 0.00 35.57 3.86
2479 4202 4.021102 AGATTCCAGTAGTGTGTTTGGG 57.979 45.455 0.00 0.00 0.00 4.12
2509 4267 2.663196 GTTGACTGCCGGCCTACT 59.337 61.111 26.77 2.36 0.00 2.57
2510 4268 1.448013 GTTGACTGCCGGCCTACTC 60.448 63.158 26.77 13.17 0.00 2.59
2512 4270 2.760385 GACTGCCGGCCTACTCCT 60.760 66.667 26.77 0.00 0.00 3.69
2513 4271 1.455217 GACTGCCGGCCTACTCCTA 60.455 63.158 26.77 0.19 0.00 2.94
2515 4273 2.831742 TGCCGGCCTACTCCTACG 60.832 66.667 26.77 0.00 0.00 3.51
2516 4274 2.832201 GCCGGCCTACTCCTACGT 60.832 66.667 18.11 0.00 0.00 3.57
2517 4275 2.843352 GCCGGCCTACTCCTACGTC 61.843 68.421 18.11 0.00 0.00 4.34
2518 4276 2.541120 CCGGCCTACTCCTACGTCG 61.541 68.421 0.00 0.00 0.00 5.12
2519 4277 1.522355 CGGCCTACTCCTACGTCGA 60.522 63.158 0.00 0.00 0.00 4.20
2665 4429 1.010125 CGGCCGCCATTAATGAACG 60.010 57.895 14.67 17.94 0.00 3.95
2667 4431 1.098712 GGCCGCCATTAATGAACGGA 61.099 55.000 34.84 0.00 44.64 4.69
2668 4432 0.307760 GCCGCCATTAATGAACGGAG 59.692 55.000 34.84 20.06 44.64 4.63
2669 4433 0.307760 CCGCCATTAATGAACGGAGC 59.692 55.000 30.56 18.27 44.64 4.70
2670 4434 1.013596 CGCCATTAATGAACGGAGCA 58.986 50.000 17.23 0.00 0.00 4.26
2671 4435 1.003545 CGCCATTAATGAACGGAGCAG 60.004 52.381 17.23 3.94 0.00 4.24
2672 4436 1.268743 GCCATTAATGAACGGAGCAGC 60.269 52.381 17.23 4.56 0.00 5.25
2673 4437 1.334869 CCATTAATGAACGGAGCAGCC 59.665 52.381 17.23 0.00 0.00 4.85
2674 4438 2.016318 CATTAATGAACGGAGCAGCCA 58.984 47.619 10.04 0.00 35.94 4.75
2675 4439 1.737838 TTAATGAACGGAGCAGCCAG 58.262 50.000 0.00 0.00 35.94 4.85
2676 4440 0.744414 TAATGAACGGAGCAGCCAGC 60.744 55.000 0.00 0.00 46.19 4.85
2842 4622 4.057428 AGCAGACCAGACGGCGTC 62.057 66.667 31.33 31.33 36.22 5.19
2895 4675 4.657824 CGCCACGTCGGGTTCTGT 62.658 66.667 0.00 0.00 34.06 3.41
2900 4680 0.303493 CACGTCGGGTTCTGTGTTTG 59.697 55.000 0.00 0.00 0.00 2.93
2958 4834 2.027561 TCAAACCCTTCATACTGGTCCG 60.028 50.000 0.00 0.00 0.00 4.79
2976 4852 1.404477 CGAATGTTCGGGTTGTTTGC 58.596 50.000 7.24 0.00 46.30 3.68
3005 4881 3.721575 TCAAACCCAGCCCATATATCTGT 59.278 43.478 0.71 0.00 0.00 3.41
3022 4898 2.126618 TCACCACGACGATGACGC 60.127 61.111 0.00 0.00 43.96 5.19
3023 4899 3.179265 CACCACGACGATGACGCC 61.179 66.667 0.00 0.00 43.96 5.68
3024 4900 4.430765 ACCACGACGATGACGCCC 62.431 66.667 0.00 0.00 43.96 6.13
3026 4902 4.129737 CACGACGATGACGCCCCT 62.130 66.667 0.00 0.00 43.96 4.79
3027 4903 3.379445 ACGACGATGACGCCCCTT 61.379 61.111 0.00 0.00 43.96 3.95
3028 4904 2.582498 CGACGATGACGCCCCTTC 60.582 66.667 0.00 0.00 43.96 3.46
3029 4905 2.577059 GACGATGACGCCCCTTCA 59.423 61.111 0.00 0.00 43.96 3.02
3030 4906 1.519455 GACGATGACGCCCCTTCAG 60.519 63.158 0.00 0.00 43.96 3.02
3031 4907 2.892425 CGATGACGCCCCTTCAGC 60.892 66.667 0.00 0.00 0.00 4.26
3032 4908 2.514824 GATGACGCCCCTTCAGCC 60.515 66.667 0.00 0.00 0.00 4.85
3033 4909 4.473520 ATGACGCCCCTTCAGCCG 62.474 66.667 0.00 0.00 0.00 5.52
3039 4915 4.796231 CCCCTTCAGCCGTCGACG 62.796 72.222 30.33 30.33 39.44 5.12
3042 4918 4.421479 CTTCAGCCGTCGACGCCT 62.421 66.667 31.73 24.67 38.18 5.52
3043 4919 3.047718 CTTCAGCCGTCGACGCCTA 62.048 63.158 31.73 11.82 38.18 3.93
3044 4920 2.337749 CTTCAGCCGTCGACGCCTAT 62.338 60.000 31.73 13.90 38.18 2.57
3045 4921 2.607668 TTCAGCCGTCGACGCCTATG 62.608 60.000 31.73 23.59 38.18 2.23
3046 4922 3.138798 AGCCGTCGACGCCTATGT 61.139 61.111 31.73 9.07 38.18 2.29
3047 4923 2.654404 GCCGTCGACGCCTATGTC 60.654 66.667 31.73 10.43 38.18 3.06
3054 4930 4.659986 ACGCCTATGTCGAGGAGT 57.340 55.556 0.00 0.00 43.97 3.85
3055 4931 3.794737 ACGCCTATGTCGAGGAGTA 57.205 52.632 0.00 0.00 46.54 2.59
3056 4932 1.307097 ACGCCTATGTCGAGGAGTAC 58.693 55.000 0.00 0.00 46.54 2.73
3057 4933 1.134159 ACGCCTATGTCGAGGAGTACT 60.134 52.381 0.00 0.00 46.54 2.73
3058 4934 2.103771 ACGCCTATGTCGAGGAGTACTA 59.896 50.000 0.00 0.00 46.54 1.82
3059 4935 3.244491 ACGCCTATGTCGAGGAGTACTAT 60.244 47.826 0.00 0.00 46.54 2.12
3060 4936 3.752222 CGCCTATGTCGAGGAGTACTATT 59.248 47.826 0.00 0.00 39.15 1.73
3063 4939 4.762765 CCTATGTCGAGGAGTACTATTGCT 59.237 45.833 0.00 0.00 39.15 3.91
3070 4946 1.681793 GGAGTACTATTGCTGCTCCGA 59.318 52.381 0.00 0.00 36.74 4.55
3076 4952 0.178068 TATTGCTGCTCCGAAGACCC 59.822 55.000 0.00 0.00 0.00 4.46
3078 4954 4.821589 GCTGCTCCGAAGACCCCG 62.822 72.222 0.00 0.00 0.00 5.73
3099 4975 4.468689 GGAAGGAACCGGCGAGGG 62.469 72.222 9.30 0.00 46.96 4.30
3102 4978 4.772231 AGGAACCGGCGAGGGCTA 62.772 66.667 9.30 0.00 46.96 3.93
3131 5007 5.280215 CCCCTCGCTCCATCTTTTATCTATT 60.280 44.000 0.00 0.00 0.00 1.73
3132 5008 5.641209 CCCTCGCTCCATCTTTTATCTATTG 59.359 44.000 0.00 0.00 0.00 1.90
3134 5010 6.146837 CCTCGCTCCATCTTTTATCTATTGTG 59.853 42.308 0.00 0.00 0.00 3.33
3182 5058 7.064728 GTCCAATCTTTCGTTAACTTGCTATCT 59.935 37.037 3.71 0.00 0.00 1.98
3183 5059 7.277981 TCCAATCTTTCGTTAACTTGCTATCTC 59.722 37.037 3.71 0.00 0.00 2.75
3189 5065 6.208988 TCGTTAACTTGCTATCTCATGTCT 57.791 37.500 3.71 0.00 0.00 3.41
3190 5066 7.329588 TCGTTAACTTGCTATCTCATGTCTA 57.670 36.000 3.71 0.00 0.00 2.59
3192 5068 7.067129 TCGTTAACTTGCTATCTCATGTCTAGT 59.933 37.037 3.71 0.00 0.00 2.57
3193 5069 7.702772 CGTTAACTTGCTATCTCATGTCTAGTT 59.297 37.037 3.71 0.00 0.00 2.24
3194 5070 9.372369 GTTAACTTGCTATCTCATGTCTAGTTT 57.628 33.333 0.00 0.00 0.00 2.66
3228 5104 7.959689 AACTTGCTGTGTATGATCTATGATC 57.040 36.000 0.00 0.98 0.00 2.92
3231 5107 8.522003 ACTTGCTGTGTATGATCTATGATCTAG 58.478 37.037 8.71 0.00 0.00 2.43
3252 5128 9.862371 ATCTAGGCTATGTTGAATTTATCTACG 57.138 33.333 0.00 0.00 36.69 3.51
3275 5152 6.072508 ACGTACTCTTTTGATCATGTTGCATT 60.073 34.615 0.00 0.00 0.00 3.56
3278 5155 4.823157 TCTTTTGATCATGTTGCATTGGG 58.177 39.130 0.00 0.00 0.00 4.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 1.602191 CGTTATTGTGTGCCGCTTTC 58.398 50.000 0.00 0.00 0.00 2.62
29 30 1.738830 GTGCACGCCTAAGCCGTTA 60.739 57.895 0.00 0.00 34.57 3.18
30 31 3.047877 GTGCACGCCTAAGCCGTT 61.048 61.111 0.00 0.00 34.57 4.44
42 43 2.621763 CACAGAGGAAGTGGTGCAC 58.378 57.895 8.80 8.80 33.43 4.57
51 52 4.311700 TCTGCCACCACAGAGGAA 57.688 55.556 0.00 0.00 41.72 3.36
96 97 1.594862 GTGACGGAGCTATGCAATGTC 59.405 52.381 0.00 0.00 0.00 3.06
97 98 1.066215 TGTGACGGAGCTATGCAATGT 60.066 47.619 0.00 0.00 0.00 2.71
99 100 2.401583 TTGTGACGGAGCTATGCAAT 57.598 45.000 0.00 0.00 0.00 3.56
101 102 1.001974 AGTTTGTGACGGAGCTATGCA 59.998 47.619 0.00 0.00 0.00 3.96
107 108 1.282875 GGCAAGTTTGTGACGGAGC 59.717 57.895 0.00 0.00 0.00 4.70
113 114 0.820871 GTTGTGGGGCAAGTTTGTGA 59.179 50.000 0.00 0.00 37.83 3.58
115 116 0.823460 CAGTTGTGGGGCAAGTTTGT 59.177 50.000 0.00 0.00 38.60 2.83
130 131 2.367567 ACCATGACGTCTGTTACCAGTT 59.632 45.455 17.92 0.00 39.82 3.16
131 132 1.968493 ACCATGACGTCTGTTACCAGT 59.032 47.619 17.92 2.51 39.82 4.00
132 133 2.743636 ACCATGACGTCTGTTACCAG 57.256 50.000 17.92 1.95 40.25 4.00
146 147 1.082117 GTCGCCACCGAAGTACCATG 61.082 60.000 0.00 0.00 46.34 3.66
147 148 1.217244 GTCGCCACCGAAGTACCAT 59.783 57.895 0.00 0.00 46.34 3.55
159 160 3.567478 ATCGCAACAGTCGTCGCCA 62.567 57.895 0.00 0.00 0.00 5.69
169 170 3.361158 CCCGCCAACATCGCAACA 61.361 61.111 0.00 0.00 0.00 3.33
184 185 2.201771 ATCTACCCGAGCTCCCCC 59.798 66.667 8.47 0.00 0.00 5.40
214 215 0.384725 CGTTCTTGGTTGCAGCTTCG 60.385 55.000 0.00 0.00 0.00 3.79
227 228 0.179040 TCGCCCCAAGTTTCGTTCTT 60.179 50.000 0.00 0.00 0.00 2.52
228 229 0.883370 GTCGCCCCAAGTTTCGTTCT 60.883 55.000 0.00 0.00 0.00 3.01
245 246 1.542492 TCTTCCCTGACACTACCGTC 58.458 55.000 0.00 0.00 36.40 4.79
273 275 2.795297 CGTCTCCCTGAGTCGCTC 59.205 66.667 0.00 0.58 35.02 5.03
294 296 2.100252 ACCGTCTTCTTTGACTTCGACA 59.900 45.455 0.00 0.00 35.00 4.35
314 316 4.778143 ACGCGATGCCCTTCCCAC 62.778 66.667 15.93 0.00 0.00 4.61
315 317 4.776322 CACGCGATGCCCTTCCCA 62.776 66.667 15.93 0.00 0.00 4.37
316 318 3.757248 ATCACGCGATGCCCTTCCC 62.757 63.158 15.93 0.00 0.00 3.97
340 342 1.966451 CGAGCCAAACACCACCTCC 60.966 63.158 0.00 0.00 0.00 4.30
383 386 3.953712 TTATCAAGCTTGAGGTCACGA 57.046 42.857 31.14 8.89 41.08 4.35
438 442 2.609299 TCACCCCTGATTCGGGCA 60.609 61.111 5.96 0.00 45.37 5.36
443 447 1.802880 CGTCGATGTCACCCCTGATTC 60.803 57.143 0.00 0.00 0.00 2.52
447 451 0.037697 TTTCGTCGATGTCACCCCTG 60.038 55.000 4.21 0.00 0.00 4.45
457 461 1.327460 CGTGCATCCATTTTCGTCGAT 59.673 47.619 0.00 0.00 0.00 3.59
458 462 0.718904 CGTGCATCCATTTTCGTCGA 59.281 50.000 0.00 0.00 0.00 4.20
460 464 0.523335 GCCGTGCATCCATTTTCGTC 60.523 55.000 0.00 0.00 0.00 4.20
461 465 1.506262 GCCGTGCATCCATTTTCGT 59.494 52.632 0.00 0.00 0.00 3.85
463 467 1.226660 CCGCCGTGCATCCATTTTC 60.227 57.895 0.00 0.00 0.00 2.29
465 469 3.825611 GCCGCCGTGCATCCATTT 61.826 61.111 0.00 0.00 0.00 2.32
479 483 1.969589 AAAACCTTAGCCCACGCCG 60.970 57.895 0.00 0.00 34.57 6.46
480 484 1.584495 CAAAACCTTAGCCCACGCC 59.416 57.895 0.00 0.00 34.57 5.68
481 485 1.584495 CCAAAACCTTAGCCCACGC 59.416 57.895 0.00 0.00 0.00 5.34
482 486 0.250989 TCCCAAAACCTTAGCCCACG 60.251 55.000 0.00 0.00 0.00 4.94
507 512 1.530293 CTCCGTCTATAGAACCCGACG 59.470 57.143 3.40 3.55 46.21 5.12
508 513 2.570135 ACTCCGTCTATAGAACCCGAC 58.430 52.381 3.40 0.00 0.00 4.79
509 514 2.947652 CAACTCCGTCTATAGAACCCGA 59.052 50.000 3.40 0.00 0.00 5.14
516 521 1.410004 TGGCCCAACTCCGTCTATAG 58.590 55.000 0.00 0.00 0.00 1.31
522 527 2.046314 CGATTGGCCCAACTCCGT 60.046 61.111 0.00 0.00 0.00 4.69
593 623 9.824534 GCCTATTTTTAATTGTTGAAAATGGTG 57.175 29.630 12.57 7.32 38.68 4.17
676 706 7.065324 CGAGGGCTTAACTGATATCTACTCTAG 59.935 44.444 3.98 0.00 0.00 2.43
706 736 7.176165 ACGATCTTATATTATGTGACGGAGGAA 59.824 37.037 0.00 0.00 0.00 3.36
707 737 6.657966 ACGATCTTATATTATGTGACGGAGGA 59.342 38.462 0.00 0.00 0.00 3.71
730 777 3.841643 TCCCTAGTTAGCTTCGAAAACG 58.158 45.455 0.00 0.00 0.00 3.60
736 783 5.367302 ACTAGTACTCCCTAGTTAGCTTCG 58.633 45.833 0.00 0.00 44.01 3.79
757 804 4.019321 ACATGTCATGGCTAGTACCAAACT 60.019 41.667 17.08 0.00 44.65 2.66
758 805 4.094887 CACATGTCATGGCTAGTACCAAAC 59.905 45.833 17.08 0.00 44.65 2.93
759 806 4.260985 CACATGTCATGGCTAGTACCAAA 58.739 43.478 17.08 0.00 44.65 3.28
760 807 3.872696 CACATGTCATGGCTAGTACCAA 58.127 45.455 17.08 0.00 44.65 3.67
761 808 2.419990 GCACATGTCATGGCTAGTACCA 60.420 50.000 17.08 0.00 45.82 3.25
769 2327 1.138883 CTGCTGCACATGTCATGGC 59.861 57.895 17.08 16.15 33.60 4.40
779 2337 1.845809 CGTCAAAGGGACTGCTGCAC 61.846 60.000 0.00 0.00 44.68 4.57
794 2352 1.482182 CCCCATGATCTCTCAACGTCA 59.518 52.381 0.00 0.00 34.37 4.35
813 2371 4.508662 ACAGTGTCCTAGTACGTACTACC 58.491 47.826 27.51 18.87 37.73 3.18
815 2373 7.824289 ACATTAACAGTGTCCTAGTACGTACTA 59.176 37.037 28.76 28.76 37.73 1.82
827 2391 5.957842 TTTCCATGACATTAACAGTGTCC 57.042 39.130 0.00 0.00 44.10 4.02
828 2392 7.029563 GGAATTTCCATGACATTAACAGTGTC 58.970 38.462 10.67 1.47 40.33 3.67
829 2393 6.071391 GGGAATTTCCATGACATTAACAGTGT 60.071 38.462 17.08 0.00 38.64 3.55
830 2394 6.153340 AGGGAATTTCCATGACATTAACAGTG 59.847 38.462 17.08 0.00 38.64 3.66
832 2396 6.780457 AGGGAATTTCCATGACATTAACAG 57.220 37.500 17.08 0.00 38.64 3.16
1043 2622 0.874607 GCGAATGCGTAGGGTAGGTG 60.875 60.000 0.00 0.00 40.36 4.00
1094 2675 1.078143 AGAAGTCCTTCCGCATGGC 60.078 57.895 3.47 0.00 40.33 4.40
1357 2942 2.125350 GAGTTGCTGGAGGCCTCG 60.125 66.667 26.36 14.76 40.92 4.63
1368 2953 4.135493 GCGTCGGCTTCGAGTTGC 62.135 66.667 0.00 0.00 44.17 4.17
1495 3098 4.796231 CCGCCCTCCGTGACGAAG 62.796 72.222 6.54 0.00 34.38 3.79
2168 3777 5.796350 AAGCTAGTAATAACAACTTGGCG 57.204 39.130 0.00 0.00 33.04 5.69
2169 3778 6.539103 AGCTAAGCTAGTAATAACAACTTGGC 59.461 38.462 0.00 0.00 36.99 4.52
2174 3804 9.530633 ACATACAGCTAAGCTAGTAATAACAAC 57.469 33.333 0.00 0.00 36.40 3.32
2191 3821 8.740906 GGAGTACATACATACATACATACAGCT 58.259 37.037 0.00 0.00 0.00 4.24
2192 3822 7.696872 CGGAGTACATACATACATACATACAGC 59.303 40.741 0.00 0.00 0.00 4.40
2193 3823 8.943002 TCGGAGTACATACATACATACATACAG 58.057 37.037 0.00 0.00 0.00 2.74
2194 3824 8.724229 GTCGGAGTACATACATACATACATACA 58.276 37.037 0.00 0.00 0.00 2.29
2195 3825 8.180267 GGTCGGAGTACATACATACATACATAC 58.820 40.741 0.00 0.00 0.00 2.39
2196 3826 8.105197 AGGTCGGAGTACATACATACATACATA 58.895 37.037 0.00 0.00 0.00 2.29
2197 3827 6.946583 AGGTCGGAGTACATACATACATACAT 59.053 38.462 0.00 0.00 0.00 2.29
2245 3880 2.724977 TTTGTTTTGTGTGTTCGGCA 57.275 40.000 0.00 0.00 0.00 5.69
2247 3882 3.984633 ACTGTTTTGTTTTGTGTGTTCGG 59.015 39.130 0.00 0.00 0.00 4.30
2260 3898 4.202010 CGGGATCTTTGTCAACTGTTTTGT 60.202 41.667 0.00 0.00 0.00 2.83
2268 3937 1.003233 AGGGACGGGATCTTTGTCAAC 59.997 52.381 12.34 6.61 34.32 3.18
2299 3968 5.443301 CGCCGTATGATTTGATGAACTATCG 60.443 44.000 0.00 0.00 38.71 2.92
2312 3985 4.634004 TGAAAGTCAAATCGCCGTATGATT 59.366 37.500 0.00 0.00 37.65 2.57
2319 3992 1.795162 GCCATGAAAGTCAAATCGCCG 60.795 52.381 0.00 0.00 0.00 6.46
2334 4007 2.684374 TGTTGATTCAATCGGAGCCATG 59.316 45.455 1.78 0.00 0.00 3.66
2335 4008 3.003394 TGTTGATTCAATCGGAGCCAT 57.997 42.857 1.78 0.00 0.00 4.40
2336 4009 2.487762 GTTGTTGATTCAATCGGAGCCA 59.512 45.455 1.78 0.00 0.00 4.75
2337 4010 2.476185 CGTTGTTGATTCAATCGGAGCC 60.476 50.000 1.78 0.00 0.00 4.70
2338 4011 2.415168 TCGTTGTTGATTCAATCGGAGC 59.585 45.455 1.78 0.00 0.00 4.70
2340 4013 3.920446 TCTCGTTGTTGATTCAATCGGA 58.080 40.909 1.78 5.83 0.00 4.55
2343 4021 5.163824 TGCTGATCTCGTTGTTGATTCAATC 60.164 40.000 1.78 0.00 0.00 2.67
2346 4024 3.663025 TGCTGATCTCGTTGTTGATTCA 58.337 40.909 0.00 0.00 0.00 2.57
2347 4025 4.330894 TGATGCTGATCTCGTTGTTGATTC 59.669 41.667 0.00 0.00 0.00 2.52
2360 4038 7.591006 AAATCAAAAATGTGTGATGCTGATC 57.409 32.000 0.00 0.00 34.70 2.92
2361 4039 7.972832 AAAATCAAAAATGTGTGATGCTGAT 57.027 28.000 0.00 0.00 34.70 2.90
2463 4145 1.234615 CCGCCCAAACACACTACTGG 61.235 60.000 0.00 0.00 0.00 4.00
2464 4146 1.852067 GCCGCCCAAACACACTACTG 61.852 60.000 0.00 0.00 0.00 2.74
2465 4147 1.599797 GCCGCCCAAACACACTACT 60.600 57.895 0.00 0.00 0.00 2.57
2466 4148 2.622962 GGCCGCCCAAACACACTAC 61.623 63.158 0.00 0.00 0.00 2.73
2509 4267 3.274586 CGGCCGATCGACGTAGGA 61.275 66.667 24.07 0.00 40.78 2.94
2510 4268 4.977126 GCGGCCGATCGACGTAGG 62.977 72.222 33.48 7.97 40.78 3.18
2515 4273 2.028484 TAATGGCGGCCGATCGAC 59.972 61.111 33.48 10.82 38.91 4.20
2516 4274 2.028484 GTAATGGCGGCCGATCGA 59.972 61.111 33.48 10.09 0.00 3.59
2517 4275 2.029073 AGTAATGGCGGCCGATCG 59.971 61.111 33.48 8.51 0.00 3.69
2518 4276 2.607892 GCAGTAATGGCGGCCGATC 61.608 63.158 33.48 20.75 0.00 3.69
2519 4277 2.591715 GCAGTAATGGCGGCCGAT 60.592 61.111 33.48 12.32 0.00 4.18
2668 4432 4.166888 TCCGATGGAGCTGGCTGC 62.167 66.667 8.47 8.47 43.29 5.25
2669 4433 2.108566 CTCCGATGGAGCTGGCTG 59.891 66.667 0.00 0.00 43.29 4.85
2677 4441 3.822192 CACGCCGTCTCCGATGGA 61.822 66.667 6.30 0.00 40.94 3.41
2679 4443 4.794439 TGCACGCCGTCTCCGATG 62.794 66.667 0.00 0.00 35.63 3.84
2680 4444 3.838271 ATGCACGCCGTCTCCGAT 61.838 61.111 0.00 0.00 35.63 4.18
2756 4536 2.186826 CCGCCTTAAATGCCCCGAG 61.187 63.158 0.00 0.00 0.00 4.63
2761 4541 2.494445 GTGGCCGCCTTAAATGCC 59.506 61.111 11.61 0.00 44.27 4.40
2890 4670 1.456705 GTGGGGCCCAAACACAGAA 60.457 57.895 30.70 0.00 34.18 3.02
2923 4799 0.109919 GTTTGATCGGTTGCGGGTTC 60.110 55.000 0.00 0.00 0.00 3.62
2926 4802 2.696759 GGGTTTGATCGGTTGCGGG 61.697 63.158 0.00 0.00 0.00 6.13
2958 4834 1.067821 TGGCAAACAACCCGAACATTC 59.932 47.619 0.00 0.00 0.00 2.67
2976 4852 3.365265 GCTGGGTTTGAGGCGTGG 61.365 66.667 0.00 0.00 0.00 4.94
3005 4881 2.126618 GCGTCATCGTCGTGGTGA 60.127 61.111 0.00 0.00 39.49 4.02
3022 4898 4.796231 CGTCGACGGCTGAAGGGG 62.796 72.222 29.70 0.00 35.37 4.79
3036 4912 1.263752 GTACTCCTCGACATAGGCGTC 59.736 57.143 0.00 0.00 36.09 5.19
3037 4913 1.134159 AGTACTCCTCGACATAGGCGT 60.134 52.381 0.00 0.00 38.18 5.68
3038 4914 1.595466 AGTACTCCTCGACATAGGCG 58.405 55.000 0.00 0.00 36.51 5.52
3039 4915 4.616373 GCAATAGTACTCCTCGACATAGGC 60.616 50.000 0.00 0.00 36.51 3.93
3040 4916 4.762765 AGCAATAGTACTCCTCGACATAGG 59.237 45.833 0.00 0.00 38.06 2.57
3041 4917 5.694816 CAGCAATAGTACTCCTCGACATAG 58.305 45.833 0.00 0.00 0.00 2.23
3042 4918 4.023107 GCAGCAATAGTACTCCTCGACATA 60.023 45.833 0.00 0.00 0.00 2.29
3043 4919 3.243569 GCAGCAATAGTACTCCTCGACAT 60.244 47.826 0.00 0.00 0.00 3.06
3044 4920 2.099263 GCAGCAATAGTACTCCTCGACA 59.901 50.000 0.00 0.00 0.00 4.35
3045 4921 2.359531 AGCAGCAATAGTACTCCTCGAC 59.640 50.000 0.00 0.00 0.00 4.20
3046 4922 2.619177 GAGCAGCAATAGTACTCCTCGA 59.381 50.000 0.00 0.00 0.00 4.04
3047 4923 2.287909 GGAGCAGCAATAGTACTCCTCG 60.288 54.545 0.00 0.00 42.99 4.63
3048 4924 2.287909 CGGAGCAGCAATAGTACTCCTC 60.288 54.545 0.00 0.00 43.92 3.71
3049 4925 1.683917 CGGAGCAGCAATAGTACTCCT 59.316 52.381 0.00 0.00 43.92 3.69
3050 4926 1.681793 TCGGAGCAGCAATAGTACTCC 59.318 52.381 0.00 0.00 42.89 3.85
3051 4927 3.066900 TCTTCGGAGCAGCAATAGTACTC 59.933 47.826 0.00 0.00 0.00 2.59
3052 4928 3.024547 TCTTCGGAGCAGCAATAGTACT 58.975 45.455 0.00 0.00 0.00 2.73
3053 4929 3.117046 GTCTTCGGAGCAGCAATAGTAC 58.883 50.000 0.00 0.00 0.00 2.73
3054 4930 2.100916 GGTCTTCGGAGCAGCAATAGTA 59.899 50.000 0.00 0.00 41.61 1.82
3055 4931 1.134670 GGTCTTCGGAGCAGCAATAGT 60.135 52.381 0.00 0.00 41.61 2.12
3056 4932 1.576356 GGTCTTCGGAGCAGCAATAG 58.424 55.000 0.00 0.00 41.61 1.73
3057 4933 0.178068 GGGTCTTCGGAGCAGCAATA 59.822 55.000 0.00 0.00 43.55 1.90
3058 4934 1.078143 GGGTCTTCGGAGCAGCAAT 60.078 57.895 0.00 0.00 43.55 3.56
3059 4935 2.347490 GGGTCTTCGGAGCAGCAA 59.653 61.111 0.00 0.00 43.55 3.91
3060 4936 3.706373 GGGGTCTTCGGAGCAGCA 61.706 66.667 0.00 0.00 43.55 4.41
3063 4939 3.068691 CTCGGGGTCTTCGGAGCA 61.069 66.667 0.00 0.00 43.55 4.26
3076 4952 3.782443 CCGGTTCCTTCCCCTCGG 61.782 72.222 0.00 0.00 0.00 4.63
3078 4954 4.468689 CGCCGGTTCCTTCCCCTC 62.469 72.222 1.90 0.00 0.00 4.30
3086 4962 3.777910 TTAGCCCTCGCCGGTTCC 61.778 66.667 1.90 0.00 34.57 3.62
3087 4963 2.510918 GTTAGCCCTCGCCGGTTC 60.511 66.667 1.90 0.00 34.57 3.62
3099 4975 4.893601 GAGCGAGGGGGCGTTAGC 62.894 72.222 0.00 0.00 44.18 3.09
3131 5007 2.616376 CCAAGTTCATCGAAACACCACA 59.384 45.455 3.01 0.00 0.00 4.17
3132 5008 2.616842 ACCAAGTTCATCGAAACACCAC 59.383 45.455 3.01 0.00 0.00 4.16
3134 5010 2.616842 ACACCAAGTTCATCGAAACACC 59.383 45.455 3.01 0.00 0.00 4.16
3167 5043 7.197017 ACTAGACATGAGATAGCAAGTTAACG 58.803 38.462 0.00 0.00 0.00 3.18
3190 5066 8.996024 ACACAGCAAGTTTAATTACAAAAACT 57.004 26.923 0.00 0.00 45.44 2.66
3212 5088 9.130661 ACATAGCCTAGATCATAGATCATACAC 57.869 37.037 9.43 0.00 0.00 2.90
3231 5107 8.813643 AGTACGTAGATAAATTCAACATAGCC 57.186 34.615 0.00 0.00 0.00 3.93
3250 5126 4.754618 TGCAACATGATCAAAAGAGTACGT 59.245 37.500 0.00 0.00 0.00 3.57
3252 5128 6.529125 CCAATGCAACATGATCAAAAGAGTAC 59.471 38.462 0.00 0.00 0.00 2.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.