Multiple sequence alignment - TraesCS4A01G301900
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS4A01G301900 | chr4A | 100.000 | 5579 | 0 | 0 | 1 | 5579 | 598717142 | 598711564 | 0.000000e+00 | 10303 |
1 | TraesCS4A01G301900 | chr4A | 94.839 | 155 | 6 | 2 | 5253 | 5406 | 597929381 | 597929534 | 2.010000e-59 | 241 |
2 | TraesCS4A01G301900 | chr4A | 95.333 | 150 | 6 | 1 | 5253 | 5401 | 37605412 | 37605561 | 2.600000e-58 | 237 |
3 | TraesCS4A01G301900 | chr4D | 94.783 | 4926 | 174 | 31 | 339 | 5227 | 4764689 | 4759810 | 0.000000e+00 | 7596 |
4 | TraesCS4A01G301900 | chr4D | 87.755 | 294 | 22 | 9 | 7 | 289 | 4765064 | 4764774 | 1.160000e-86 | 331 |
5 | TraesCS4A01G301900 | chr4D | 93.532 | 201 | 10 | 1 | 3814 | 4014 | 5034844 | 5035041 | 4.230000e-76 | 296 |
6 | TraesCS4A01G301900 | chr4D | 88.889 | 153 | 13 | 3 | 5401 | 5551 | 4759461 | 4759311 | 9.540000e-43 | 185 |
7 | TraesCS4A01G301900 | chr4B | 94.770 | 4474 | 175 | 28 | 715 | 5155 | 7812471 | 7808024 | 0.000000e+00 | 6911 |
8 | TraesCS4A01G301900 | chr4B | 93.968 | 315 | 15 | 2 | 4901 | 5215 | 8411966 | 8412276 | 1.820000e-129 | 473 |
9 | TraesCS4A01G301900 | chr4B | 86.911 | 382 | 31 | 4 | 289 | 669 | 7812817 | 7812454 | 1.450000e-110 | 411 |
10 | TraesCS4A01G301900 | chr1A | 95.364 | 151 | 5 | 2 | 5253 | 5401 | 241680342 | 241680492 | 7.220000e-59 | 239 |
11 | TraesCS4A01G301900 | chr1A | 94.079 | 152 | 7 | 2 | 5253 | 5403 | 541703642 | 541703792 | 4.350000e-56 | 230 |
12 | TraesCS4A01G301900 | chr7A | 95.918 | 147 | 4 | 2 | 5253 | 5397 | 23346926 | 23346780 | 2.600000e-58 | 237 |
13 | TraesCS4A01G301900 | chr6A | 95.918 | 147 | 4 | 2 | 5253 | 5397 | 76526006 | 76526152 | 2.600000e-58 | 237 |
14 | TraesCS4A01G301900 | chr2A | 94.268 | 157 | 5 | 4 | 5253 | 5406 | 66217108 | 66217263 | 2.600000e-58 | 237 |
15 | TraesCS4A01G301900 | chr5A | 94.156 | 154 | 8 | 1 | 5253 | 5405 | 463798451 | 463798298 | 3.360000e-57 | 233 |
16 | TraesCS4A01G301900 | chr5A | 94.702 | 151 | 7 | 1 | 5253 | 5402 | 464193305 | 464193455 | 3.360000e-57 | 233 |
17 | TraesCS4A01G301900 | chr3D | 83.495 | 206 | 26 | 6 | 1454 | 1654 | 147821782 | 147821984 | 9.540000e-43 | 185 |
18 | TraesCS4A01G301900 | chr3B | 82.843 | 204 | 29 | 4 | 1454 | 1654 | 214559682 | 214559482 | 1.600000e-40 | 178 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS4A01G301900 | chr4A | 598711564 | 598717142 | 5578 | True | 10303 | 10303 | 100.000000 | 1 | 5579 | 1 | chr4A.!!$R1 | 5578 |
1 | TraesCS4A01G301900 | chr4D | 4759311 | 4765064 | 5753 | True | 2704 | 7596 | 90.475667 | 7 | 5551 | 3 | chr4D.!!$R1 | 5544 |
2 | TraesCS4A01G301900 | chr4B | 7808024 | 7812817 | 4793 | True | 3661 | 6911 | 90.840500 | 289 | 5155 | 2 | chr4B.!!$R1 | 4866 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
239 | 250 | 0.674534 | CCCCTCTTCCCGTATCTTCG | 59.325 | 60.000 | 0.0 | 0.0 | 0.00 | 3.79 | F |
284 | 295 | 1.068474 | GTTCGCTGCTTGTGTACGAT | 58.932 | 50.000 | 0.0 | 0.0 | 32.13 | 3.73 | F |
729 | 787 | 1.208293 | GAACCCTGGACCTCTGATGTC | 59.792 | 57.143 | 4.7 | 4.7 | 0.00 | 3.06 | F |
2069 | 2149 | 1.480954 | GATAAAGGCACAGGGAGACGA | 59.519 | 52.381 | 0.0 | 0.0 | 0.00 | 4.20 | F |
3897 | 3983 | 0.037697 | CTTCACCGTCCACCGATTCA | 60.038 | 55.000 | 0.0 | 0.0 | 39.56 | 2.57 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1908 | 1988 | 0.179029 | ACGGTGTTCAACAGAAGGGG | 60.179 | 55.000 | 0.00 | 0.00 | 0.00 | 4.79 | R |
2252 | 2336 | 1.692042 | AGGGCCCCTCACATCTCTG | 60.692 | 63.158 | 21.43 | 0.00 | 0.00 | 3.35 | R |
2417 | 2501 | 0.319211 | TGTCCAAACGTACAGAGCCG | 60.319 | 55.000 | 0.00 | 0.00 | 0.00 | 5.52 | R |
3969 | 4055 | 0.036010 | CTGAAGGCTGGACGATTGGT | 60.036 | 55.000 | 0.00 | 0.00 | 0.00 | 3.67 | R |
5559 | 5839 | 0.032952 | ATGCCTTGCAAACACAGCTG | 59.967 | 50.000 | 13.48 | 13.48 | 43.62 | 4.24 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
30 | 32 | 8.267894 | ACATGAATGAATGGTAGCTAGTTAGTT | 58.732 | 33.333 | 0.00 | 0.00 | 31.46 | 2.24 |
72 | 74 | 4.555709 | TGTCAAGGGCGGCGTTGT | 62.556 | 61.111 | 33.93 | 7.15 | 0.00 | 3.32 |
113 | 115 | 4.379813 | CGAGAGTAAATTTGCAGTGCCAAT | 60.380 | 41.667 | 13.72 | 10.90 | 0.00 | 3.16 |
137 | 139 | 7.243604 | TGGCATTGGAAAAATAGAGTGAATT | 57.756 | 32.000 | 0.00 | 0.00 | 0.00 | 2.17 |
157 | 159 | 1.064003 | TGCTTTGCCCAGTCTCCTTA | 58.936 | 50.000 | 0.00 | 0.00 | 0.00 | 2.69 |
162 | 164 | 1.153549 | GCCCAGTCTCCTTACGCAG | 60.154 | 63.158 | 0.00 | 0.00 | 0.00 | 5.18 |
163 | 165 | 1.605058 | GCCCAGTCTCCTTACGCAGA | 61.605 | 60.000 | 0.00 | 0.00 | 0.00 | 4.26 |
177 | 179 | 1.446272 | GCAGAGTGTACGGTGCCTC | 60.446 | 63.158 | 6.61 | 6.61 | 0.00 | 4.70 |
198 | 209 | 2.280971 | CGTTCTGATTCTGTCGATGCTG | 59.719 | 50.000 | 0.00 | 0.00 | 0.00 | 4.41 |
210 | 221 | 4.445453 | TGTCGATGCTGATGAATAAAGCT | 58.555 | 39.130 | 0.00 | 0.00 | 37.82 | 3.74 |
212 | 223 | 5.203370 | GTCGATGCTGATGAATAAAGCTTG | 58.797 | 41.667 | 0.00 | 0.00 | 37.82 | 4.01 |
213 | 224 | 3.973135 | CGATGCTGATGAATAAAGCTTGC | 59.027 | 43.478 | 0.00 | 0.00 | 37.82 | 4.01 |
217 | 228 | 3.294214 | CTGATGAATAAAGCTTGCCCCT | 58.706 | 45.455 | 0.00 | 0.00 | 0.00 | 4.79 |
218 | 229 | 3.290710 | TGATGAATAAAGCTTGCCCCTC | 58.709 | 45.455 | 0.00 | 0.00 | 0.00 | 4.30 |
239 | 250 | 0.674534 | CCCCTCTTCCCGTATCTTCG | 59.325 | 60.000 | 0.00 | 0.00 | 0.00 | 3.79 |
264 | 275 | 3.864686 | CGGTGCCTGTGTATGCGC | 61.865 | 66.667 | 0.00 | 0.00 | 37.27 | 6.09 |
283 | 294 | 2.513159 | GTTCGCTGCTTGTGTACGA | 58.487 | 52.632 | 0.00 | 0.00 | 0.00 | 3.43 |
284 | 295 | 1.068474 | GTTCGCTGCTTGTGTACGAT | 58.932 | 50.000 | 0.00 | 0.00 | 32.13 | 3.73 |
294 | 305 | 4.875536 | TGCTTGTGTACGATGCTATCATTT | 59.124 | 37.500 | 0.00 | 0.00 | 31.96 | 2.32 |
295 | 306 | 5.200454 | GCTTGTGTACGATGCTATCATTTG | 58.800 | 41.667 | 0.00 | 0.00 | 31.96 | 2.32 |
310 | 366 | 7.226325 | TGCTATCATTTGTTTTTCTTTTGGGTG | 59.774 | 33.333 | 0.00 | 0.00 | 0.00 | 4.61 |
331 | 387 | 2.212900 | TACGAGTGCTGCAGCGATGT | 62.213 | 55.000 | 32.11 | 26.90 | 45.83 | 3.06 |
332 | 388 | 2.385875 | CGAGTGCTGCAGCGATGTT | 61.386 | 57.895 | 32.11 | 16.03 | 45.83 | 2.71 |
350 | 406 | 3.386486 | TGTTCAGTCACGCTAAATCGTT | 58.614 | 40.909 | 0.00 | 0.00 | 41.21 | 3.85 |
368 | 424 | 2.156117 | CGTTGAAAGATTACCGTTGCGA | 59.844 | 45.455 | 0.00 | 0.00 | 0.00 | 5.10 |
407 | 463 | 2.740981 | GACTGTCTCATTCCTGCTGTTG | 59.259 | 50.000 | 0.00 | 0.00 | 0.00 | 3.33 |
424 | 480 | 5.764686 | TGCTGTTGAGTCACACTAAATCATT | 59.235 | 36.000 | 0.00 | 0.00 | 0.00 | 2.57 |
441 | 498 | 7.789273 | AAATCATTGAAAGATTGTTGTTGCA | 57.211 | 28.000 | 0.00 | 0.00 | 35.96 | 4.08 |
442 | 499 | 7.789273 | AATCATTGAAAGATTGTTGTTGCAA | 57.211 | 28.000 | 0.00 | 0.00 | 34.59 | 4.08 |
453 | 510 | 4.139183 | TGTTGTTGCAAAAACAAACAGC | 57.861 | 36.364 | 28.81 | 11.85 | 41.23 | 4.40 |
457 | 514 | 3.152232 | GTTGCAAAAACAAACAGCGTTG | 58.848 | 40.909 | 0.00 | 0.00 | 34.52 | 4.10 |
469 | 526 | 1.308998 | CAGCGTTGGGAACTGTTTCT | 58.691 | 50.000 | 0.00 | 0.00 | 31.71 | 2.52 |
541 | 598 | 5.688621 | CCTGCACGGAAAAATGATTCATATG | 59.311 | 40.000 | 0.00 | 0.00 | 33.16 | 1.78 |
549 | 606 | 6.703165 | GGAAAAATGATTCATATGCCTGAACC | 59.297 | 38.462 | 0.00 | 0.00 | 37.93 | 3.62 |
571 | 629 | 7.385778 | ACCGCTTATCTATATCTGAACTCTC | 57.614 | 40.000 | 0.00 | 0.00 | 0.00 | 3.20 |
586 | 644 | 4.627035 | TGAACTCTCTGATATGTTTGCACG | 59.373 | 41.667 | 0.00 | 0.00 | 0.00 | 5.34 |
658 | 716 | 3.135530 | CCTCTTTTATAGCTGGGCTCTGT | 59.864 | 47.826 | 0.00 | 0.00 | 40.44 | 3.41 |
679 | 737 | 8.795786 | TCTGTTATGTTTGCACAAAGATTAAC | 57.204 | 30.769 | 10.55 | 12.03 | 36.05 | 2.01 |
683 | 741 | 9.040939 | GTTATGTTTGCACAAAGATTAACCTTT | 57.959 | 29.630 | 10.55 | 0.00 | 36.05 | 3.11 |
729 | 787 | 1.208293 | GAACCCTGGACCTCTGATGTC | 59.792 | 57.143 | 4.70 | 4.70 | 0.00 | 3.06 |
795 | 853 | 6.945435 | TCTGGCACTTAAATCACTTCCATTTA | 59.055 | 34.615 | 0.00 | 0.00 | 0.00 | 1.40 |
923 | 981 | 3.690139 | TCGTTAGACTTCTACAGAGGCAG | 59.310 | 47.826 | 0.00 | 0.00 | 0.00 | 4.85 |
1016 | 1074 | 5.476599 | TGTAAAACATGCAGCTATTGGTTCT | 59.523 | 36.000 | 0.00 | 0.00 | 0.00 | 3.01 |
1017 | 1075 | 4.708726 | AAACATGCAGCTATTGGTTCTC | 57.291 | 40.909 | 0.00 | 0.00 | 0.00 | 2.87 |
1029 | 1087 | 4.640771 | ATTGGTTCTCCTTTGTCTAGCA | 57.359 | 40.909 | 0.00 | 0.00 | 34.23 | 3.49 |
1078 | 1136 | 6.313905 | CCGAAAGAATTAGTGTAGCAGATTGT | 59.686 | 38.462 | 0.00 | 0.00 | 0.00 | 2.71 |
1079 | 1137 | 7.148407 | CCGAAAGAATTAGTGTAGCAGATTGTT | 60.148 | 37.037 | 0.00 | 0.00 | 0.00 | 2.83 |
1080 | 1138 | 8.230486 | CGAAAGAATTAGTGTAGCAGATTGTTT | 58.770 | 33.333 | 0.00 | 0.00 | 0.00 | 2.83 |
1146 | 1221 | 2.959030 | GGGCCTCTGAAAGTTTTTGAGT | 59.041 | 45.455 | 0.84 | 0.00 | 33.76 | 3.41 |
1299 | 1374 | 4.593206 | TGTAGGTTCCAAGTGATCAGAAGT | 59.407 | 41.667 | 0.00 | 0.00 | 0.00 | 3.01 |
1301 | 1376 | 4.392940 | AGGTTCCAAGTGATCAGAAGTTG | 58.607 | 43.478 | 0.00 | 0.00 | 0.00 | 3.16 |
1432 | 1507 | 4.115516 | CGACATAACCCTCTTCATGACAG | 58.884 | 47.826 | 0.00 | 0.00 | 0.00 | 3.51 |
1499 | 1577 | 4.899457 | TGACATCCTAATGACGTTATCCCT | 59.101 | 41.667 | 0.00 | 0.00 | 36.67 | 4.20 |
1641 | 1719 | 5.072055 | TCACTGCAAATGATTGAGAAGGAA | 58.928 | 37.500 | 0.00 | 0.00 | 38.94 | 3.36 |
1668 | 1746 | 7.880160 | TGGTTTTCAATCATCTACTAATGGG | 57.120 | 36.000 | 0.00 | 0.00 | 0.00 | 4.00 |
1789 | 1867 | 3.494048 | CCAACAACCAAATAAGGCAAGCA | 60.494 | 43.478 | 0.00 | 0.00 | 0.00 | 3.91 |
1908 | 1988 | 3.708563 | TGGTGTTGTAGCTGCTTTTTC | 57.291 | 42.857 | 7.79 | 0.00 | 0.00 | 2.29 |
2045 | 2125 | 4.300345 | TCGAAAGGGGTAATAGGATTGGA | 58.700 | 43.478 | 0.00 | 0.00 | 0.00 | 3.53 |
2069 | 2149 | 1.480954 | GATAAAGGCACAGGGAGACGA | 59.519 | 52.381 | 0.00 | 0.00 | 0.00 | 4.20 |
2252 | 2336 | 2.167075 | CCCCATTCATGAAAAGCCAGAC | 59.833 | 50.000 | 13.09 | 0.00 | 0.00 | 3.51 |
2330 | 2414 | 1.560505 | GCCAAGATGGAATTGTGGGT | 58.439 | 50.000 | 0.00 | 0.00 | 40.96 | 4.51 |
2331 | 2415 | 1.901833 | GCCAAGATGGAATTGTGGGTT | 59.098 | 47.619 | 0.00 | 0.00 | 40.96 | 4.11 |
2397 | 2481 | 2.754552 | AGACGCAACCATTTGTATGCAT | 59.245 | 40.909 | 3.79 | 3.79 | 38.69 | 3.96 |
2417 | 2501 | 3.802948 | TCTAAGGATGTTCGCTCTTCC | 57.197 | 47.619 | 4.34 | 4.34 | 33.54 | 3.46 |
2456 | 2540 | 0.951040 | GTGCACTTCTCCCAACTCCG | 60.951 | 60.000 | 10.32 | 0.00 | 0.00 | 4.63 |
2484 | 2568 | 9.607333 | TCAGTAATTCTGATAGGATTGGTAGAT | 57.393 | 33.333 | 4.18 | 0.00 | 46.77 | 1.98 |
2726 | 2810 | 1.541588 | GGACATCCAACAAGCCAAGAC | 59.458 | 52.381 | 0.00 | 0.00 | 35.64 | 3.01 |
2740 | 2824 | 1.528586 | CCAAGACAGAAGACTTGCACG | 59.471 | 52.381 | 0.00 | 0.00 | 43.23 | 5.34 |
2872 | 2956 | 8.586570 | TTCAACTTTGCAACCTATAATGTTTG | 57.413 | 30.769 | 0.00 | 0.00 | 0.00 | 2.93 |
2875 | 2959 | 8.487176 | CAACTTTGCAACCTATAATGTTTGTTC | 58.513 | 33.333 | 0.00 | 0.00 | 0.00 | 3.18 |
2891 | 2976 | 8.871686 | ATGTTTGTTCTAAACCTTGTGATTTC | 57.128 | 30.769 | 0.00 | 0.00 | 0.00 | 2.17 |
2911 | 2996 | 6.678568 | TTTCCCATGTACCATGTTGAATTT | 57.321 | 33.333 | 3.75 | 0.00 | 0.00 | 1.82 |
2918 | 3003 | 7.329226 | CCATGTACCATGTTGAATTTTCTTCAC | 59.671 | 37.037 | 3.75 | 0.00 | 0.00 | 3.18 |
2934 | 3019 | 5.437289 | TCTTCACACATGCCTTTAAACTG | 57.563 | 39.130 | 0.00 | 0.00 | 0.00 | 3.16 |
3123 | 3209 | 3.178611 | GGGCGGGATCCCAGGATT | 61.179 | 66.667 | 30.42 | 0.00 | 45.82 | 3.01 |
3141 | 3227 | 7.039082 | CCCAGGATTTCAAGGTTTTCTAATCAA | 60.039 | 37.037 | 0.00 | 0.00 | 0.00 | 2.57 |
3182 | 3268 | 5.023533 | TCTGTACCTGTTGGATTATCAGC | 57.976 | 43.478 | 0.00 | 0.00 | 37.04 | 4.26 |
3184 | 3270 | 1.668419 | ACCTGTTGGATTATCAGCGC | 58.332 | 50.000 | 0.00 | 0.00 | 37.04 | 5.92 |
3306 | 3392 | 3.973657 | GCATGACATTTATGCTTCCAGG | 58.026 | 45.455 | 0.00 | 0.00 | 45.64 | 4.45 |
3329 | 3415 | 3.244491 | CCATTTCTGCCATTGGGTCAAAA | 60.244 | 43.478 | 4.53 | 0.45 | 36.17 | 2.44 |
3378 | 3464 | 4.400567 | GCTCATACCTTGCCTCAAAATTCT | 59.599 | 41.667 | 0.00 | 0.00 | 0.00 | 2.40 |
3412 | 3498 | 1.812922 | CGGCCTAGTCTGCAAGCAG | 60.813 | 63.158 | 15.67 | 15.67 | 44.86 | 4.24 |
3451 | 3537 | 0.595095 | GCAGACTCAAAAGCACCCTG | 59.405 | 55.000 | 0.00 | 0.00 | 0.00 | 4.45 |
3519 | 3605 | 5.487433 | TCACAAGAAAATTCCTCATCGCTA | 58.513 | 37.500 | 0.00 | 0.00 | 0.00 | 4.26 |
3568 | 3654 | 1.482593 | CTACCGGAATGGAAGAGCAGT | 59.517 | 52.381 | 9.46 | 0.00 | 42.00 | 4.40 |
3595 | 3681 | 1.152756 | GTGTCCTTGCCCAGTGGTT | 60.153 | 57.895 | 8.74 | 0.00 | 0.00 | 3.67 |
3642 | 3728 | 4.783764 | AAGTGCTAGTAATTTGTTGGCC | 57.216 | 40.909 | 0.00 | 0.00 | 0.00 | 5.36 |
3684 | 3770 | 5.940192 | TCATACCAAACACAAGTGATCAC | 57.060 | 39.130 | 18.47 | 18.47 | 0.00 | 3.06 |
3729 | 3815 | 2.705127 | GGCATCTCTTCCATCTTCCTCT | 59.295 | 50.000 | 0.00 | 0.00 | 0.00 | 3.69 |
3749 | 3835 | 1.512694 | CCAGCGAAAATGCCCCTTC | 59.487 | 57.895 | 0.00 | 0.00 | 34.65 | 3.46 |
3870 | 3956 | 0.315251 | GTTCTCTGGTTGCAAAGGGC | 59.685 | 55.000 | 0.00 | 0.00 | 45.13 | 5.19 |
3897 | 3983 | 0.037697 | CTTCACCGTCCACCGATTCA | 60.038 | 55.000 | 0.00 | 0.00 | 39.56 | 2.57 |
3919 | 4005 | 1.741525 | GCTGTTGCAAGAAAGCCCA | 59.258 | 52.632 | 14.81 | 1.25 | 39.41 | 5.36 |
3932 | 4018 | 5.248380 | AGAAAGCCCAGTAAATCAAGTCT | 57.752 | 39.130 | 0.00 | 0.00 | 0.00 | 3.24 |
3969 | 4055 | 1.842920 | TGCTTCAGCTCCACCTCCA | 60.843 | 57.895 | 0.00 | 0.00 | 42.66 | 3.86 |
4040 | 4126 | 0.032615 | TTGTTGCCCAAACCTCCTGT | 60.033 | 50.000 | 0.00 | 0.00 | 38.06 | 4.00 |
4151 | 4237 | 1.065102 | CCAAAGCCATCGATGCAGAAG | 59.935 | 52.381 | 20.25 | 7.05 | 0.00 | 2.85 |
4269 | 4355 | 1.227292 | GTACCCTAGCAAGAGCCGC | 60.227 | 63.158 | 0.00 | 0.00 | 43.56 | 6.53 |
4349 | 4435 | 2.436824 | GGGAACCGCAGAGGAAGC | 60.437 | 66.667 | 0.00 | 0.00 | 45.00 | 3.86 |
4463 | 4549 | 1.672881 | GTGGATGTACAAGGATGCTGC | 59.327 | 52.381 | 0.00 | 0.00 | 0.00 | 5.25 |
4503 | 4598 | 2.156098 | AGAAGGTGGCAGCTCCCAA | 61.156 | 57.895 | 20.86 | 0.00 | 36.46 | 4.12 |
4567 | 4662 | 2.542411 | GGAATCTCAAACGATGGCATGC | 60.542 | 50.000 | 9.90 | 9.90 | 0.00 | 4.06 |
4584 | 4679 | 3.415212 | CATGCAGGTGGATTAGTATGGG | 58.585 | 50.000 | 0.00 | 0.00 | 0.00 | 4.00 |
4682 | 4777 | 2.338785 | GCCCAGCAGAGCCTCAAAC | 61.339 | 63.158 | 0.00 | 0.00 | 0.00 | 2.93 |
4795 | 4891 | 0.991920 | GGTCCCTTGATCTCCACCAA | 59.008 | 55.000 | 0.00 | 0.00 | 0.00 | 3.67 |
4809 | 4905 | 5.875224 | TCTCCACCAATTGTCATGTAGAAA | 58.125 | 37.500 | 4.43 | 0.00 | 0.00 | 2.52 |
4853 | 4949 | 3.093717 | ACATACCGAGCCAATTAGTCG | 57.906 | 47.619 | 0.00 | 0.00 | 0.00 | 4.18 |
4886 | 4984 | 1.879380 | CAGCGAGTCAACATTTTGGGA | 59.121 | 47.619 | 0.00 | 0.00 | 33.06 | 4.37 |
5000 | 5103 | 3.479269 | GCGAGCGAAACGGGTGAG | 61.479 | 66.667 | 0.00 | 0.00 | 0.00 | 3.51 |
5122 | 5226 | 4.114015 | ACTTCATCATGGATGGATGCAT | 57.886 | 40.909 | 0.00 | 0.00 | 41.46 | 3.96 |
5164 | 5268 | 0.950116 | GCTCTTGCTTGCTTGTCTGT | 59.050 | 50.000 | 0.00 | 0.00 | 36.03 | 3.41 |
5166 | 5270 | 2.492012 | CTCTTGCTTGCTTGTCTGTCT | 58.508 | 47.619 | 0.00 | 0.00 | 0.00 | 3.41 |
5167 | 5271 | 2.216046 | TCTTGCTTGCTTGTCTGTCTG | 58.784 | 47.619 | 0.00 | 0.00 | 0.00 | 3.51 |
5168 | 5272 | 1.945394 | CTTGCTTGCTTGTCTGTCTGT | 59.055 | 47.619 | 0.00 | 0.00 | 0.00 | 3.41 |
5169 | 5273 | 1.586422 | TGCTTGCTTGTCTGTCTGTC | 58.414 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
5170 | 5274 | 1.134431 | TGCTTGCTTGTCTGTCTGTCA | 60.134 | 47.619 | 0.00 | 0.00 | 0.00 | 3.58 |
5171 | 5275 | 2.149578 | GCTTGCTTGTCTGTCTGTCAT | 58.850 | 47.619 | 0.00 | 0.00 | 0.00 | 3.06 |
5172 | 5276 | 2.551459 | GCTTGCTTGTCTGTCTGTCATT | 59.449 | 45.455 | 0.00 | 0.00 | 0.00 | 2.57 |
5173 | 5277 | 3.608707 | GCTTGCTTGTCTGTCTGTCATTG | 60.609 | 47.826 | 0.00 | 0.00 | 0.00 | 2.82 |
5174 | 5278 | 3.198409 | TGCTTGTCTGTCTGTCATTGT | 57.802 | 42.857 | 0.00 | 0.00 | 0.00 | 2.71 |
5175 | 5279 | 4.335400 | TGCTTGTCTGTCTGTCATTGTA | 57.665 | 40.909 | 0.00 | 0.00 | 0.00 | 2.41 |
5176 | 5280 | 4.898320 | TGCTTGTCTGTCTGTCATTGTAT | 58.102 | 39.130 | 0.00 | 0.00 | 0.00 | 2.29 |
5177 | 5281 | 4.931601 | TGCTTGTCTGTCTGTCATTGTATC | 59.068 | 41.667 | 0.00 | 0.00 | 0.00 | 2.24 |
5178 | 5282 | 5.174395 | GCTTGTCTGTCTGTCATTGTATCT | 58.826 | 41.667 | 0.00 | 0.00 | 0.00 | 1.98 |
5179 | 5283 | 5.063186 | GCTTGTCTGTCTGTCATTGTATCTG | 59.937 | 44.000 | 0.00 | 0.00 | 0.00 | 2.90 |
5180 | 5284 | 4.498241 | TGTCTGTCTGTCATTGTATCTGC | 58.502 | 43.478 | 0.00 | 0.00 | 0.00 | 4.26 |
5181 | 5285 | 3.868077 | GTCTGTCTGTCATTGTATCTGCC | 59.132 | 47.826 | 0.00 | 0.00 | 0.00 | 4.85 |
5182 | 5286 | 3.515104 | TCTGTCTGTCATTGTATCTGCCA | 59.485 | 43.478 | 0.00 | 0.00 | 0.00 | 4.92 |
5183 | 5287 | 3.599343 | TGTCTGTCATTGTATCTGCCAC | 58.401 | 45.455 | 0.00 | 0.00 | 0.00 | 5.01 |
5227 | 5331 | 9.590451 | CCATTCTGTTATTTCTGTTATTTGCAT | 57.410 | 29.630 | 0.00 | 0.00 | 0.00 | 3.96 |
5246 | 5350 | 7.637631 | TTGCATACATTCTTTAATAGTGGCA | 57.362 | 32.000 | 0.00 | 0.00 | 0.00 | 4.92 |
5247 | 5351 | 7.637631 | TGCATACATTCTTTAATAGTGGCAA | 57.362 | 32.000 | 0.00 | 0.00 | 0.00 | 4.52 |
5248 | 5352 | 8.060931 | TGCATACATTCTTTAATAGTGGCAAA | 57.939 | 30.769 | 0.00 | 0.00 | 0.00 | 3.68 |
5249 | 5353 | 8.526978 | TGCATACATTCTTTAATAGTGGCAAAA | 58.473 | 29.630 | 0.00 | 0.00 | 0.00 | 2.44 |
5250 | 5354 | 9.364989 | GCATACATTCTTTAATAGTGGCAAAAA | 57.635 | 29.630 | 0.00 | 0.00 | 0.00 | 1.94 |
5255 | 5359 | 9.585099 | CATTCTTTAATAGTGGCAAAAATAGCA | 57.415 | 29.630 | 0.00 | 0.00 | 0.00 | 3.49 |
5256 | 5360 | 8.980143 | TTCTTTAATAGTGGCAAAAATAGCAC | 57.020 | 30.769 | 0.00 | 0.00 | 0.00 | 4.40 |
5257 | 5361 | 8.348285 | TCTTTAATAGTGGCAAAAATAGCACT | 57.652 | 30.769 | 0.00 | 0.00 | 0.00 | 4.40 |
5258 | 5362 | 8.243426 | TCTTTAATAGTGGCAAAAATAGCACTG | 58.757 | 33.333 | 0.00 | 0.00 | 0.00 | 3.66 |
5259 | 5363 | 2.730550 | AGTGGCAAAAATAGCACTGC | 57.269 | 45.000 | 0.00 | 0.00 | 0.00 | 4.40 |
5262 | 5366 | 3.763360 | AGTGGCAAAAATAGCACTGCATA | 59.237 | 39.130 | 3.30 | 0.00 | 36.50 | 3.14 |
5264 | 5368 | 5.593909 | AGTGGCAAAAATAGCACTGCATATA | 59.406 | 36.000 | 3.30 | 0.00 | 36.50 | 0.86 |
5265 | 5369 | 6.266103 | AGTGGCAAAAATAGCACTGCATATAT | 59.734 | 34.615 | 3.30 | 0.00 | 36.50 | 0.86 |
5268 | 5372 | 6.306356 | GGCAAAAATAGCACTGCATATATTCG | 59.694 | 38.462 | 3.30 | 0.00 | 36.50 | 3.34 |
5270 | 5374 | 8.015087 | GCAAAAATAGCACTGCATATATTCGTA | 58.985 | 33.333 | 3.30 | 0.00 | 34.87 | 3.43 |
5273 | 5377 | 8.777865 | AAATAGCACTGCATATATTCGTATGT | 57.222 | 30.769 | 3.30 | 0.00 | 35.09 | 2.29 |
5274 | 5378 | 7.761651 | ATAGCACTGCATATATTCGTATGTG | 57.238 | 36.000 | 3.30 | 0.00 | 35.09 | 3.21 |
5276 | 5380 | 6.223120 | AGCACTGCATATATTCGTATGTGAA | 58.777 | 36.000 | 3.30 | 0.00 | 35.09 | 3.18 |
5277 | 5381 | 6.705825 | AGCACTGCATATATTCGTATGTGAAA | 59.294 | 34.615 | 3.30 | 0.00 | 35.09 | 2.69 |
5278 | 5382 | 7.011773 | GCACTGCATATATTCGTATGTGAAAG | 58.988 | 38.462 | 0.00 | 0.00 | 35.09 | 2.62 |
5279 | 5383 | 7.513132 | CACTGCATATATTCGTATGTGAAAGG | 58.487 | 38.462 | 0.00 | 0.00 | 35.09 | 3.11 |
5280 | 5384 | 7.384932 | CACTGCATATATTCGTATGTGAAAGGA | 59.615 | 37.037 | 0.00 | 0.00 | 35.09 | 3.36 |
5281 | 5385 | 7.600375 | ACTGCATATATTCGTATGTGAAAGGAG | 59.400 | 37.037 | 0.00 | 0.00 | 35.09 | 3.69 |
5282 | 5386 | 6.368791 | TGCATATATTCGTATGTGAAAGGAGC | 59.631 | 38.462 | 0.00 | 0.00 | 35.09 | 4.70 |
5285 | 5389 | 8.993121 | CATATATTCGTATGTGAAAGGAGCTTT | 58.007 | 33.333 | 0.00 | 0.00 | 36.29 | 3.51 |
5321 | 5425 | 9.524106 | AATTTTCACATTATGCATGTCATGTAG | 57.476 | 29.630 | 10.16 | 9.56 | 43.17 | 2.74 |
5322 | 5426 | 7.628769 | TTTCACATTATGCATGTCATGTAGT | 57.371 | 32.000 | 10.16 | 1.63 | 43.17 | 2.73 |
5323 | 5427 | 8.729805 | TTTCACATTATGCATGTCATGTAGTA | 57.270 | 30.769 | 10.16 | 2.89 | 43.17 | 1.82 |
5325 | 5429 | 8.907222 | TCACATTATGCATGTCATGTAGTATT | 57.093 | 30.769 | 10.16 | 0.00 | 43.17 | 1.89 |
5326 | 5430 | 9.995003 | TCACATTATGCATGTCATGTAGTATTA | 57.005 | 29.630 | 10.16 | 0.00 | 43.17 | 0.98 |
5349 | 5453 | 9.965824 | ATTAATTTTATCAATAGTCAAAGGCGG | 57.034 | 29.630 | 0.00 | 0.00 | 0.00 | 6.13 |
5350 | 5454 | 7.404671 | AATTTTATCAATAGTCAAAGGCGGT | 57.595 | 32.000 | 0.00 | 0.00 | 0.00 | 5.68 |
5351 | 5455 | 6.431198 | TTTTATCAATAGTCAAAGGCGGTC | 57.569 | 37.500 | 0.00 | 0.00 | 0.00 | 4.79 |
5352 | 5456 | 3.914426 | ATCAATAGTCAAAGGCGGTCT | 57.086 | 42.857 | 0.00 | 0.00 | 0.00 | 3.85 |
5354 | 5458 | 3.334691 | TCAATAGTCAAAGGCGGTCTTG | 58.665 | 45.455 | 0.00 | 0.00 | 35.55 | 3.02 |
5355 | 5459 | 3.007506 | TCAATAGTCAAAGGCGGTCTTGA | 59.992 | 43.478 | 0.00 | 0.00 | 35.55 | 3.02 |
5356 | 5460 | 2.450609 | TAGTCAAAGGCGGTCTTGAC | 57.549 | 50.000 | 13.46 | 13.46 | 35.55 | 3.18 |
5357 | 5461 | 0.468226 | AGTCAAAGGCGGTCTTGACA | 59.532 | 50.000 | 19.55 | 0.00 | 36.68 | 3.58 |
5358 | 5462 | 1.134220 | AGTCAAAGGCGGTCTTGACAA | 60.134 | 47.619 | 19.55 | 0.00 | 36.68 | 3.18 |
5359 | 5463 | 1.673920 | GTCAAAGGCGGTCTTGACAAA | 59.326 | 47.619 | 15.31 | 0.00 | 35.52 | 2.83 |
5360 | 5464 | 1.673920 | TCAAAGGCGGTCTTGACAAAC | 59.326 | 47.619 | 0.00 | 0.00 | 35.55 | 2.93 |
5361 | 5465 | 0.661020 | AAAGGCGGTCTTGACAAACG | 59.339 | 50.000 | 0.00 | 0.00 | 35.55 | 3.60 |
5367 | 5471 | 3.103793 | CGGTCTTGACAAACGCATTAG | 57.896 | 47.619 | 3.08 | 0.00 | 0.00 | 1.73 |
5369 | 5473 | 2.414161 | GGTCTTGACAAACGCATTAGGC | 60.414 | 50.000 | 3.08 | 0.00 | 39.90 | 3.93 |
5370 | 5474 | 1.810151 | TCTTGACAAACGCATTAGGCC | 59.190 | 47.619 | 0.00 | 0.00 | 40.31 | 5.19 |
5371 | 5475 | 0.885196 | TTGACAAACGCATTAGGCCC | 59.115 | 50.000 | 0.00 | 0.00 | 40.31 | 5.80 |
5372 | 5476 | 0.037590 | TGACAAACGCATTAGGCCCT | 59.962 | 50.000 | 0.00 | 0.00 | 40.31 | 5.19 |
5373 | 5477 | 1.279558 | TGACAAACGCATTAGGCCCTA | 59.720 | 47.619 | 0.00 | 0.00 | 40.31 | 3.53 |
5374 | 5478 | 2.092646 | TGACAAACGCATTAGGCCCTAT | 60.093 | 45.455 | 0.00 | 0.00 | 40.31 | 2.57 |
5375 | 5479 | 3.134985 | TGACAAACGCATTAGGCCCTATA | 59.865 | 43.478 | 0.00 | 0.00 | 40.31 | 1.31 |
5376 | 5480 | 4.202419 | TGACAAACGCATTAGGCCCTATAT | 60.202 | 41.667 | 0.00 | 0.00 | 40.31 | 0.86 |
5377 | 5481 | 5.012251 | TGACAAACGCATTAGGCCCTATATA | 59.988 | 40.000 | 0.00 | 0.00 | 40.31 | 0.86 |
5379 | 5483 | 5.247564 | ACAAACGCATTAGGCCCTATATAGA | 59.752 | 40.000 | 11.53 | 0.00 | 40.31 | 1.98 |
5380 | 5484 | 6.070194 | ACAAACGCATTAGGCCCTATATAGAT | 60.070 | 38.462 | 11.53 | 0.00 | 40.31 | 1.98 |
5381 | 5485 | 5.537300 | ACGCATTAGGCCCTATATAGATG | 57.463 | 43.478 | 11.53 | 6.87 | 40.31 | 2.90 |
5382 | 5486 | 4.345257 | ACGCATTAGGCCCTATATAGATGG | 59.655 | 45.833 | 11.53 | 6.04 | 40.31 | 3.51 |
5384 | 5488 | 5.070446 | CGCATTAGGCCCTATATAGATGGAA | 59.930 | 44.000 | 11.53 | 0.00 | 40.31 | 3.53 |
5386 | 5490 | 6.465035 | GCATTAGGCCCTATATAGATGGAAGG | 60.465 | 46.154 | 11.53 | 3.94 | 36.11 | 3.46 |
5388 | 5492 | 4.889780 | AGGCCCTATATAGATGGAAGGAG | 58.110 | 47.826 | 11.53 | 0.00 | 0.00 | 3.69 |
5389 | 5493 | 3.970640 | GGCCCTATATAGATGGAAGGAGG | 59.029 | 52.174 | 11.53 | 1.87 | 0.00 | 4.30 |
5390 | 5494 | 3.970640 | GCCCTATATAGATGGAAGGAGGG | 59.029 | 52.174 | 11.53 | 3.52 | 44.52 | 4.30 |
5391 | 5495 | 4.327010 | GCCCTATATAGATGGAAGGAGGGA | 60.327 | 50.000 | 11.53 | 0.00 | 44.48 | 4.20 |
5392 | 5496 | 5.463154 | CCCTATATAGATGGAAGGAGGGAG | 58.537 | 50.000 | 11.53 | 0.00 | 44.48 | 4.30 |
5393 | 5497 | 5.042979 | CCCTATATAGATGGAAGGAGGGAGT | 60.043 | 48.000 | 11.53 | 0.00 | 44.48 | 3.85 |
5394 | 5498 | 5.896678 | CCTATATAGATGGAAGGAGGGAGTG | 59.103 | 48.000 | 11.53 | 0.00 | 0.00 | 3.51 |
5397 | 5677 | 0.179936 | GATGGAAGGAGGGAGTGCTG | 59.820 | 60.000 | 0.00 | 0.00 | 0.00 | 4.41 |
5403 | 5683 | 0.853530 | AGGAGGGAGTGCTGGTTTTT | 59.146 | 50.000 | 0.00 | 0.00 | 0.00 | 1.94 |
5404 | 5684 | 0.961753 | GGAGGGAGTGCTGGTTTTTG | 59.038 | 55.000 | 0.00 | 0.00 | 0.00 | 2.44 |
5409 | 5689 | 1.341209 | GGAGTGCTGGTTTTTGAAGGG | 59.659 | 52.381 | 0.00 | 0.00 | 0.00 | 3.95 |
5412 | 5692 | 3.103742 | AGTGCTGGTTTTTGAAGGGAAA | 58.896 | 40.909 | 0.00 | 0.00 | 0.00 | 3.13 |
5416 | 5696 | 5.007626 | GTGCTGGTTTTTGAAGGGAAATTTC | 59.992 | 40.000 | 9.83 | 9.83 | 0.00 | 2.17 |
5417 | 5697 | 4.515191 | GCTGGTTTTTGAAGGGAAATTTCC | 59.485 | 41.667 | 26.41 | 26.41 | 46.82 | 3.13 |
5436 | 5716 | 1.283029 | CCATCCACCTCAACCTCATGT | 59.717 | 52.381 | 0.00 | 0.00 | 0.00 | 3.21 |
5461 | 5741 | 7.707035 | GTGAAGAATCCTACGTATTGAAGATGT | 59.293 | 37.037 | 0.00 | 0.00 | 0.00 | 3.06 |
5467 | 5747 | 5.049828 | CCTACGTATTGAAGATGTCATGCA | 58.950 | 41.667 | 0.00 | 0.00 | 35.70 | 3.96 |
5477 | 5757 | 4.978083 | AGATGTCATGCAACTCCATTTC | 57.022 | 40.909 | 0.00 | 0.00 | 0.00 | 2.17 |
5482 | 5762 | 3.254166 | GTCATGCAACTCCATTTCTGTGT | 59.746 | 43.478 | 0.00 | 0.00 | 0.00 | 3.72 |
5495 | 5775 | 8.924511 | TCCATTTCTGTGTTTTTCTCTATTCT | 57.075 | 30.769 | 0.00 | 0.00 | 0.00 | 2.40 |
5525 | 5805 | 6.757897 | TTACAAATCCTGCGAATCAAAGAT | 57.242 | 33.333 | 0.00 | 0.00 | 0.00 | 2.40 |
5526 | 5806 | 4.990257 | ACAAATCCTGCGAATCAAAGATG | 58.010 | 39.130 | 0.00 | 0.00 | 0.00 | 2.90 |
5528 | 5808 | 1.382522 | TCCTGCGAATCAAAGATGCC | 58.617 | 50.000 | 0.00 | 0.00 | 0.00 | 4.40 |
5544 | 5824 | 3.382546 | AGATGCCCTGAATGTTTGTATGC | 59.617 | 43.478 | 0.00 | 0.00 | 0.00 | 3.14 |
5551 | 5831 | 4.930405 | CCTGAATGTTTGTATGCATGCAAA | 59.070 | 37.500 | 31.20 | 31.20 | 39.48 | 3.68 |
5552 | 5832 | 5.583061 | CCTGAATGTTTGTATGCATGCAAAT | 59.417 | 36.000 | 35.09 | 24.29 | 42.66 | 2.32 |
5553 | 5833 | 6.757478 | CCTGAATGTTTGTATGCATGCAAATA | 59.243 | 34.615 | 35.09 | 32.92 | 42.66 | 1.40 |
5554 | 5834 | 7.278203 | CCTGAATGTTTGTATGCATGCAAATAA | 59.722 | 33.333 | 35.09 | 27.99 | 42.66 | 1.40 |
5555 | 5835 | 8.187354 | TGAATGTTTGTATGCATGCAAATAAG | 57.813 | 30.769 | 35.09 | 0.00 | 42.66 | 1.73 |
5556 | 5836 | 7.818446 | TGAATGTTTGTATGCATGCAAATAAGT | 59.182 | 29.630 | 35.09 | 27.20 | 42.66 | 2.24 |
5557 | 5837 | 6.947903 | TGTTTGTATGCATGCAAATAAGTG | 57.052 | 33.333 | 35.09 | 0.00 | 42.66 | 3.16 |
5558 | 5838 | 6.685657 | TGTTTGTATGCATGCAAATAAGTGA | 58.314 | 32.000 | 35.09 | 16.50 | 42.66 | 3.41 |
5559 | 5839 | 6.585702 | TGTTTGTATGCATGCAAATAAGTGAC | 59.414 | 34.615 | 35.09 | 24.84 | 42.66 | 3.67 |
5560 | 5840 | 5.893897 | TGTATGCATGCAAATAAGTGACA | 57.106 | 34.783 | 26.68 | 14.60 | 0.00 | 3.58 |
5561 | 5841 | 5.882553 | TGTATGCATGCAAATAAGTGACAG | 58.117 | 37.500 | 26.68 | 0.00 | 0.00 | 3.51 |
5562 | 5842 | 3.220507 | TGCATGCAAATAAGTGACAGC | 57.779 | 42.857 | 20.30 | 0.00 | 0.00 | 4.40 |
5563 | 5843 | 2.821378 | TGCATGCAAATAAGTGACAGCT | 59.179 | 40.909 | 20.30 | 0.00 | 0.00 | 4.24 |
5564 | 5844 | 3.176708 | GCATGCAAATAAGTGACAGCTG | 58.823 | 45.455 | 14.21 | 13.48 | 0.00 | 4.24 |
5565 | 5845 | 3.366679 | GCATGCAAATAAGTGACAGCTGT | 60.367 | 43.478 | 21.88 | 21.88 | 0.00 | 4.40 |
5566 | 5846 | 3.902261 | TGCAAATAAGTGACAGCTGTG | 57.098 | 42.857 | 27.27 | 7.50 | 0.00 | 3.66 |
5567 | 5847 | 3.213506 | TGCAAATAAGTGACAGCTGTGT | 58.786 | 40.909 | 27.27 | 9.11 | 40.71 | 3.72 |
5568 | 5848 | 3.631686 | TGCAAATAAGTGACAGCTGTGTT | 59.368 | 39.130 | 27.27 | 16.65 | 36.88 | 3.32 |
5569 | 5849 | 4.097741 | TGCAAATAAGTGACAGCTGTGTTT | 59.902 | 37.500 | 27.27 | 17.00 | 36.88 | 2.83 |
5570 | 5850 | 4.442073 | GCAAATAAGTGACAGCTGTGTTTG | 59.558 | 41.667 | 27.27 | 21.85 | 36.88 | 2.93 |
5571 | 5851 | 3.904136 | ATAAGTGACAGCTGTGTTTGC | 57.096 | 42.857 | 27.27 | 10.06 | 36.88 | 3.68 |
5572 | 5852 | 1.462616 | AAGTGACAGCTGTGTTTGCA | 58.537 | 45.000 | 27.27 | 12.96 | 36.88 | 4.08 |
5573 | 5853 | 1.462616 | AGTGACAGCTGTGTTTGCAA | 58.537 | 45.000 | 27.27 | 0.00 | 36.88 | 4.08 |
5574 | 5854 | 1.402968 | AGTGACAGCTGTGTTTGCAAG | 59.597 | 47.619 | 27.27 | 0.00 | 36.88 | 4.01 |
5575 | 5855 | 0.740149 | TGACAGCTGTGTTTGCAAGG | 59.260 | 50.000 | 27.27 | 0.00 | 36.88 | 3.61 |
5576 | 5856 | 0.595825 | GACAGCTGTGTTTGCAAGGC | 60.596 | 55.000 | 27.27 | 0.95 | 36.88 | 4.35 |
5577 | 5857 | 1.321805 | ACAGCTGTGTTTGCAAGGCA | 61.322 | 50.000 | 20.97 | 0.00 | 36.47 | 4.75 |
5578 | 5858 | 0.032952 | CAGCTGTGTTTGCAAGGCAT | 59.967 | 50.000 | 5.25 | 0.00 | 38.76 | 4.40 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
0 | 1 | 3.949754 | AGCTACCATTCATTCATGTGGTG | 59.050 | 43.478 | 12.42 | 5.30 | 44.27 | 4.17 |
1 | 2 | 4.240881 | AGCTACCATTCATTCATGTGGT | 57.759 | 40.909 | 8.33 | 8.33 | 46.16 | 4.16 |
2 | 3 | 5.371526 | ACTAGCTACCATTCATTCATGTGG | 58.628 | 41.667 | 0.00 | 0.00 | 37.74 | 4.17 |
3 | 4 | 6.932356 | AACTAGCTACCATTCATTCATGTG | 57.068 | 37.500 | 0.00 | 0.00 | 0.00 | 3.21 |
4 | 5 | 7.796054 | ACTAACTAGCTACCATTCATTCATGT | 58.204 | 34.615 | 0.00 | 0.00 | 0.00 | 3.21 |
5 | 6 | 8.668510 | AACTAACTAGCTACCATTCATTCATG | 57.331 | 34.615 | 0.00 | 0.00 | 0.00 | 3.07 |
17 | 18 | 5.469084 | ACAGCAAACCAAACTAACTAGCTAC | 59.531 | 40.000 | 0.00 | 0.00 | 0.00 | 3.58 |
54 | 56 | 3.726517 | CAACGCCGCCCTTGACAG | 61.727 | 66.667 | 0.00 | 0.00 | 0.00 | 3.51 |
83 | 85 | 5.124457 | ACTGCAAATTTACTCTCGCAATGAT | 59.876 | 36.000 | 0.00 | 0.00 | 0.00 | 2.45 |
113 | 115 | 6.855763 | ATTCACTCTATTTTTCCAATGCCA | 57.144 | 33.333 | 0.00 | 0.00 | 0.00 | 4.92 |
122 | 124 | 6.427853 | GGGCAAAGCAAATTCACTCTATTTTT | 59.572 | 34.615 | 0.00 | 0.00 | 0.00 | 1.94 |
137 | 139 | 0.185901 | AAGGAGACTGGGCAAAGCAA | 59.814 | 50.000 | 0.00 | 0.00 | 42.68 | 3.91 |
157 | 159 | 2.049433 | GCACCGTACACTCTGCGT | 60.049 | 61.111 | 0.00 | 0.00 | 0.00 | 5.24 |
162 | 164 | 0.731855 | GAACGAGGCACCGTACACTC | 60.732 | 60.000 | 5.44 | 0.00 | 42.54 | 3.51 |
163 | 165 | 1.177256 | AGAACGAGGCACCGTACACT | 61.177 | 55.000 | 5.44 | 3.94 | 42.54 | 3.55 |
177 | 179 | 2.280971 | CAGCATCGACAGAATCAGAACG | 59.719 | 50.000 | 0.00 | 0.00 | 0.00 | 3.95 |
198 | 209 | 2.625314 | GGAGGGGCAAGCTTTATTCATC | 59.375 | 50.000 | 0.00 | 0.00 | 0.00 | 2.92 |
224 | 235 | 2.681848 | GAGACACGAAGATACGGGAAGA | 59.318 | 50.000 | 0.00 | 0.00 | 39.16 | 2.87 |
225 | 236 | 2.683867 | AGAGACACGAAGATACGGGAAG | 59.316 | 50.000 | 0.00 | 0.00 | 39.16 | 3.46 |
226 | 237 | 2.681848 | GAGAGACACGAAGATACGGGAA | 59.318 | 50.000 | 0.00 | 0.00 | 39.16 | 3.97 |
231 | 242 | 2.791849 | GCACCGAGAGACACGAAGATAC | 60.792 | 54.545 | 0.00 | 0.00 | 0.00 | 2.24 |
232 | 243 | 1.400846 | GCACCGAGAGACACGAAGATA | 59.599 | 52.381 | 0.00 | 0.00 | 0.00 | 1.98 |
233 | 244 | 0.171455 | GCACCGAGAGACACGAAGAT | 59.829 | 55.000 | 0.00 | 0.00 | 0.00 | 2.40 |
234 | 245 | 1.579932 | GCACCGAGAGACACGAAGA | 59.420 | 57.895 | 0.00 | 0.00 | 0.00 | 2.87 |
236 | 247 | 1.901948 | AGGCACCGAGAGACACGAA | 60.902 | 57.895 | 0.00 | 0.00 | 0.00 | 3.85 |
239 | 250 | 1.373497 | CACAGGCACCGAGAGACAC | 60.373 | 63.158 | 0.00 | 0.00 | 0.00 | 3.67 |
264 | 275 | 1.127817 | CGTACACAAGCAGCGAACG | 59.872 | 57.895 | 0.00 | 0.00 | 0.00 | 3.95 |
283 | 294 | 7.938490 | ACCCAAAAGAAAAACAAATGATAGCAT | 59.062 | 29.630 | 0.00 | 0.00 | 35.92 | 3.79 |
284 | 295 | 7.226325 | CACCCAAAAGAAAAACAAATGATAGCA | 59.774 | 33.333 | 0.00 | 0.00 | 0.00 | 3.49 |
294 | 305 | 5.591067 | ACTCGTATCACCCAAAAGAAAAACA | 59.409 | 36.000 | 0.00 | 0.00 | 0.00 | 2.83 |
295 | 306 | 5.912955 | CACTCGTATCACCCAAAAGAAAAAC | 59.087 | 40.000 | 0.00 | 0.00 | 0.00 | 2.43 |
310 | 366 | 0.596083 | ATCGCTGCAGCACTCGTATC | 60.596 | 55.000 | 36.03 | 5.81 | 42.21 | 2.24 |
331 | 387 | 3.644823 | TCAACGATTTAGCGTGACTGAA | 58.355 | 40.909 | 0.00 | 0.00 | 44.86 | 3.02 |
332 | 388 | 3.291809 | TCAACGATTTAGCGTGACTGA | 57.708 | 42.857 | 0.00 | 0.00 | 44.86 | 3.41 |
350 | 406 | 4.035324 | TGTTTTCGCAACGGTAATCTTTCA | 59.965 | 37.500 | 0.00 | 0.00 | 0.00 | 2.69 |
368 | 424 | 2.024369 | AGTCCCAAACCCTGTCTGTTTT | 60.024 | 45.455 | 0.00 | 0.00 | 33.82 | 2.43 |
407 | 463 | 9.552114 | CAATCTTTCAATGATTTAGTGTGACTC | 57.448 | 33.333 | 0.00 | 0.00 | 32.47 | 3.36 |
424 | 480 | 6.791887 | TGTTTTTGCAACAACAATCTTTCA | 57.208 | 29.167 | 24.84 | 3.25 | 29.81 | 2.69 |
441 | 498 | 2.997303 | GTTCCCAACGCTGTTTGTTTTT | 59.003 | 40.909 | 0.00 | 0.00 | 0.00 | 1.94 |
442 | 499 | 2.232696 | AGTTCCCAACGCTGTTTGTTTT | 59.767 | 40.909 | 0.00 | 0.00 | 36.23 | 2.43 |
453 | 510 | 3.349488 | GGAAAGAAACAGTTCCCAACG | 57.651 | 47.619 | 0.00 | 0.00 | 37.87 | 4.10 |
469 | 526 | 2.159014 | CGGATAGTGGAACATCGGGAAA | 60.159 | 50.000 | 0.00 | 0.00 | 44.52 | 3.13 |
476 | 533 | 2.236146 | TGCTGAACGGATAGTGGAACAT | 59.764 | 45.455 | 0.00 | 0.00 | 44.52 | 2.71 |
541 | 598 | 5.105716 | TCAGATATAGATAAGCGGTTCAGGC | 60.106 | 44.000 | 1.59 | 0.00 | 0.00 | 4.85 |
549 | 606 | 8.262715 | TCAGAGAGTTCAGATATAGATAAGCG | 57.737 | 38.462 | 0.00 | 0.00 | 0.00 | 4.68 |
571 | 629 | 4.627035 | TCAGTCTTCGTGCAAACATATCAG | 59.373 | 41.667 | 0.00 | 0.00 | 0.00 | 2.90 |
586 | 644 | 7.117812 | TCGTTCCATTCATAAAGTTCAGTCTTC | 59.882 | 37.037 | 0.00 | 0.00 | 0.00 | 2.87 |
679 | 737 | 8.229253 | TCCACTCATCATTCAATTCATAAAGG | 57.771 | 34.615 | 0.00 | 0.00 | 0.00 | 3.11 |
683 | 741 | 6.717997 | CCCATCCACTCATCATTCAATTCATA | 59.282 | 38.462 | 0.00 | 0.00 | 0.00 | 2.15 |
717 | 775 | 0.528017 | TGTCTGCGACATCAGAGGTC | 59.472 | 55.000 | 5.06 | 5.06 | 43.10 | 3.85 |
795 | 853 | 6.942532 | TGTTACAGAGAAGAAGCAAACAAT | 57.057 | 33.333 | 0.00 | 0.00 | 0.00 | 2.71 |
883 | 941 | 7.431668 | GTCTAACGACGTTTCTCTTATAAGCAT | 59.568 | 37.037 | 19.71 | 0.00 | 0.00 | 3.79 |
884 | 942 | 6.744537 | GTCTAACGACGTTTCTCTTATAAGCA | 59.255 | 38.462 | 19.71 | 0.00 | 0.00 | 3.91 |
900 | 958 | 3.439476 | TGCCTCTGTAGAAGTCTAACGAC | 59.561 | 47.826 | 0.00 | 0.00 | 40.54 | 4.34 |
923 | 981 | 3.835395 | CTGATATCAGGAGGAGTTACCCC | 59.165 | 52.174 | 22.89 | 0.00 | 40.20 | 4.95 |
961 | 1019 | 3.761218 | TCTGGACACAACAACACAATGTT | 59.239 | 39.130 | 0.00 | 0.00 | 44.08 | 2.71 |
962 | 1020 | 3.351740 | TCTGGACACAACAACACAATGT | 58.648 | 40.909 | 0.00 | 0.00 | 34.24 | 2.71 |
1004 | 1062 | 4.917906 | AGACAAAGGAGAACCAATAGCT | 57.082 | 40.909 | 0.00 | 0.00 | 38.94 | 3.32 |
1029 | 1087 | 7.260603 | GGCAAGAGTAATCAACAGCAAATATT | 58.739 | 34.615 | 0.00 | 0.00 | 0.00 | 1.28 |
1078 | 1136 | 6.589523 | CCATTGACAACAGAACAAACAGAAAA | 59.410 | 34.615 | 0.00 | 0.00 | 0.00 | 2.29 |
1079 | 1137 | 6.071672 | TCCATTGACAACAGAACAAACAGAAA | 60.072 | 34.615 | 0.00 | 0.00 | 0.00 | 2.52 |
1080 | 1138 | 5.417266 | TCCATTGACAACAGAACAAACAGAA | 59.583 | 36.000 | 0.00 | 0.00 | 0.00 | 3.02 |
1146 | 1221 | 8.748412 | CAAGGAAATGGTATCATAAGGAAACAA | 58.252 | 33.333 | 0.00 | 0.00 | 32.44 | 2.83 |
1299 | 1374 | 4.637534 | GTCAAGCAGATAAAGAGATGGCAA | 59.362 | 41.667 | 0.00 | 0.00 | 0.00 | 4.52 |
1301 | 1376 | 4.194640 | TGTCAAGCAGATAAAGAGATGGC | 58.805 | 43.478 | 0.00 | 0.00 | 0.00 | 4.40 |
1372 | 1447 | 5.395435 | GGGTCAAGACTAACCTCAGGTAATC | 60.395 | 48.000 | 0.00 | 0.00 | 33.12 | 1.75 |
1410 | 1485 | 4.115516 | CTGTCATGAAGAGGGTTATGTCG | 58.884 | 47.826 | 0.00 | 0.00 | 0.00 | 4.35 |
1420 | 1495 | 5.529060 | GGGTTTATTAGGCTGTCATGAAGAG | 59.471 | 44.000 | 0.00 | 0.00 | 0.00 | 2.85 |
1432 | 1507 | 3.977312 | AGGAAACTGGGGTTTATTAGGC | 58.023 | 45.455 | 0.00 | 0.00 | 44.58 | 3.93 |
1530 | 1608 | 1.765314 | ACCTGTCTATAGGCCTTGCAG | 59.235 | 52.381 | 12.58 | 12.21 | 41.75 | 4.41 |
1614 | 1692 | 3.192001 | TCTCAATCATTTGCAGTGAAGCC | 59.808 | 43.478 | 7.79 | 0.00 | 32.61 | 4.35 |
1641 | 1719 | 8.960591 | CCATTAGTAGATGATTGAAAACCAAGT | 58.039 | 33.333 | 0.00 | 0.00 | 38.31 | 3.16 |
1660 | 1738 | 2.092753 | CAGCACCTGATGACCCATTAGT | 60.093 | 50.000 | 0.00 | 0.00 | 32.44 | 2.24 |
1716 | 1794 | 4.207165 | GGTTTACATGTATGCTGTGGGAT | 58.793 | 43.478 | 6.36 | 0.00 | 0.00 | 3.85 |
1908 | 1988 | 0.179029 | ACGGTGTTCAACAGAAGGGG | 60.179 | 55.000 | 0.00 | 0.00 | 0.00 | 4.79 |
2045 | 2125 | 4.273318 | GTCTCCCTGTGCCTTTATCAATT | 58.727 | 43.478 | 0.00 | 0.00 | 0.00 | 2.32 |
2069 | 2149 | 4.211920 | GCCTAGAGTTCAGAGTATCCAGT | 58.788 | 47.826 | 0.00 | 0.00 | 33.66 | 4.00 |
2132 | 2216 | 5.423931 | AGAAAAACAAAGGAGGCCAAGTAAA | 59.576 | 36.000 | 5.01 | 0.00 | 0.00 | 2.01 |
2140 | 2224 | 9.489084 | AAATACATAAAGAAAAACAAAGGAGGC | 57.511 | 29.630 | 0.00 | 0.00 | 0.00 | 4.70 |
2182 | 2266 | 4.260375 | GCTGTAAGTTTGGCAGATCATACG | 60.260 | 45.833 | 0.00 | 0.00 | 35.30 | 3.06 |
2252 | 2336 | 1.692042 | AGGGCCCCTCACATCTCTG | 60.692 | 63.158 | 21.43 | 0.00 | 0.00 | 3.35 |
2397 | 2481 | 2.099263 | CGGAAGAGCGAACATCCTTAGA | 59.901 | 50.000 | 0.00 | 0.00 | 0.00 | 2.10 |
2407 | 2491 | 0.963856 | TACAGAGCCGGAAGAGCGAA | 60.964 | 55.000 | 5.05 | 0.00 | 34.64 | 4.70 |
2417 | 2501 | 0.319211 | TGTCCAAACGTACAGAGCCG | 60.319 | 55.000 | 0.00 | 0.00 | 0.00 | 5.52 |
2484 | 2568 | 6.417258 | TCCAGCTTTTATCAGATGATGACAA | 58.583 | 36.000 | 5.58 | 0.00 | 41.91 | 3.18 |
2656 | 2740 | 2.214216 | TCAGGGTCCAACGGGTCTG | 61.214 | 63.158 | 0.00 | 0.00 | 34.93 | 3.51 |
2726 | 2810 | 2.148916 | TGTACCGTGCAAGTCTTCTG | 57.851 | 50.000 | 0.00 | 0.00 | 0.00 | 3.02 |
2740 | 2824 | 3.275617 | TTGCTCCACATACCATGTACC | 57.724 | 47.619 | 0.00 | 0.00 | 42.70 | 3.34 |
2780 | 2864 | 2.496871 | TCCCATGGCAAAAATAGCACTG | 59.503 | 45.455 | 6.09 | 0.00 | 0.00 | 3.66 |
2827 | 2911 | 2.381911 | AGGCATCCCAGCAGTTAAATG | 58.618 | 47.619 | 0.00 | 0.00 | 35.83 | 2.32 |
2872 | 2956 | 6.015434 | ACATGGGAAATCACAAGGTTTAGAAC | 60.015 | 38.462 | 0.00 | 0.00 | 30.29 | 3.01 |
2875 | 2959 | 5.982890 | ACATGGGAAATCACAAGGTTTAG | 57.017 | 39.130 | 0.00 | 0.00 | 30.29 | 1.85 |
2911 | 2996 | 5.359576 | ACAGTTTAAAGGCATGTGTGAAGAA | 59.640 | 36.000 | 0.00 | 0.00 | 0.00 | 2.52 |
2918 | 3003 | 9.507280 | CATAGAAATACAGTTTAAAGGCATGTG | 57.493 | 33.333 | 0.00 | 0.00 | 0.00 | 3.21 |
2959 | 3044 | 3.341823 | ACTCTGCATGATCCTGAACAAC | 58.658 | 45.455 | 0.00 | 0.00 | 0.00 | 3.32 |
3000 | 3086 | 2.158460 | CCTATCAATTCTTGGGTCCCCC | 60.158 | 54.545 | 5.13 | 0.00 | 45.71 | 5.40 |
3044 | 3130 | 1.898154 | CCACGAGATTCCGGGAACT | 59.102 | 57.895 | 12.53 | 11.23 | 34.30 | 3.01 |
3123 | 3209 | 7.831691 | TGGTGATTGATTAGAAAACCTTGAA | 57.168 | 32.000 | 0.00 | 0.00 | 0.00 | 2.69 |
3141 | 3227 | 3.945921 | CAGATGAAGTGATGCTTGGTGAT | 59.054 | 43.478 | 0.00 | 0.00 | 37.59 | 3.06 |
3184 | 3270 | 1.875576 | GCTTGATCGTCCAGCATAGGG | 60.876 | 57.143 | 6.31 | 0.00 | 0.00 | 3.53 |
3306 | 3392 | 0.176449 | GACCCAATGGCAGAAATGGC | 59.824 | 55.000 | 0.00 | 0.00 | 33.59 | 4.40 |
3329 | 3415 | 1.777272 | GGTTATGCTCTTCCTGGGGAT | 59.223 | 52.381 | 0.00 | 0.00 | 0.00 | 3.85 |
3361 | 3447 | 1.270550 | CGCAGAATTTTGAGGCAAGGT | 59.729 | 47.619 | 0.00 | 0.00 | 0.00 | 3.50 |
3378 | 3464 | 1.218047 | CCGACCCTGAGAATTCGCA | 59.782 | 57.895 | 11.56 | 11.56 | 0.00 | 5.10 |
3412 | 3498 | 0.319728 | TGAGAAGCCTGTGACAGAGC | 59.680 | 55.000 | 15.33 | 15.30 | 32.44 | 4.09 |
3451 | 3537 | 1.008079 | GTGGCTTTGACTGCACAGC | 60.008 | 57.895 | 0.00 | 0.00 | 44.97 | 4.40 |
3510 | 3596 | 4.222886 | CAGACGGTCTAAATAGCGATGAG | 58.777 | 47.826 | 10.87 | 0.00 | 42.76 | 2.90 |
3519 | 3605 | 3.430929 | GCAGATGGACAGACGGTCTAAAT | 60.431 | 47.826 | 10.87 | 2.32 | 46.16 | 1.40 |
3568 | 3654 | 0.687354 | GGCAAGGACACCTCTTCAGA | 59.313 | 55.000 | 0.00 | 0.00 | 30.89 | 3.27 |
3595 | 3681 | 0.250252 | TCTGACTTTGCATGTGCGGA | 60.250 | 50.000 | 0.01 | 0.00 | 45.83 | 5.54 |
3642 | 3728 | 4.076394 | TGAATCCACCCTTAAAAAGACCG | 58.924 | 43.478 | 0.00 | 0.00 | 0.00 | 4.79 |
3684 | 3770 | 0.448990 | CATGTGAATGTGGGACAGCG | 59.551 | 55.000 | 0.00 | 0.00 | 41.80 | 5.18 |
3729 | 3815 | 3.381136 | GGGGCATTTTCGCTGGCA | 61.381 | 61.111 | 0.00 | 0.00 | 40.70 | 4.92 |
3749 | 3835 | 0.109597 | GTTTGGTGCATGAGGCTTCG | 60.110 | 55.000 | 0.00 | 0.00 | 45.15 | 3.79 |
3870 | 3956 | 3.007635 | GGTGGACGGTGAAGAAATTAGG | 58.992 | 50.000 | 0.00 | 0.00 | 0.00 | 2.69 |
3897 | 3983 | 1.271656 | GGCTTTCTTGCAACAGCAGAT | 59.728 | 47.619 | 17.91 | 0.00 | 39.82 | 2.90 |
3919 | 4005 | 5.798132 | TGATGTGCTCAGACTTGATTTACT | 58.202 | 37.500 | 0.00 | 0.00 | 31.68 | 2.24 |
3932 | 4018 | 2.968675 | CACTGACATCTGATGTGCTCA | 58.031 | 47.619 | 26.71 | 17.03 | 45.03 | 4.26 |
3969 | 4055 | 0.036010 | CTGAAGGCTGGACGATTGGT | 60.036 | 55.000 | 0.00 | 0.00 | 0.00 | 3.67 |
4040 | 4126 | 3.292492 | TTAGGTCAGCCATCTCGACTA | 57.708 | 47.619 | 0.00 | 0.00 | 37.19 | 2.59 |
4068 | 4154 | 1.845809 | GCACCACTGGCTTGAACTCG | 61.846 | 60.000 | 0.00 | 0.00 | 0.00 | 4.18 |
4142 | 4228 | 6.690194 | ATCTTAAACCACATCTTCTGCATC | 57.310 | 37.500 | 0.00 | 0.00 | 0.00 | 3.91 |
4151 | 4237 | 7.672983 | TCAAGTCTGAATCTTAAACCACATC | 57.327 | 36.000 | 0.00 | 0.00 | 0.00 | 3.06 |
4269 | 4355 | 4.878397 | GGTTCAGGTAATCTGTCAATCCAG | 59.122 | 45.833 | 0.00 | 0.00 | 43.76 | 3.86 |
4349 | 4435 | 2.749621 | GCAGGGACCATAAACTCACAAG | 59.250 | 50.000 | 0.00 | 0.00 | 0.00 | 3.16 |
4463 | 4549 | 3.740832 | TGCCTTTGAGCGATCATAATACG | 59.259 | 43.478 | 3.25 | 0.00 | 34.65 | 3.06 |
4503 | 4598 | 0.685097 | TGGGTGCGAGCTCTTTACTT | 59.315 | 50.000 | 12.85 | 0.00 | 0.00 | 2.24 |
4515 | 4610 | 0.747644 | TTGCATGGACTATGGGTGCG | 60.748 | 55.000 | 0.57 | 0.00 | 39.22 | 5.34 |
4567 | 4662 | 4.080582 | TGACAACCCATACTAATCCACCTG | 60.081 | 45.833 | 0.00 | 0.00 | 0.00 | 4.00 |
4584 | 4679 | 5.052481 | TCTGCTGCTATATGACATGACAAC | 58.948 | 41.667 | 0.00 | 0.00 | 0.00 | 3.32 |
4682 | 4777 | 1.314534 | TGTTTGCCTCCATGCCATCG | 61.315 | 55.000 | 0.00 | 0.00 | 0.00 | 3.84 |
4795 | 4891 | 7.823745 | AAGAACACCTTTTCTACATGACAAT | 57.176 | 32.000 | 0.00 | 0.00 | 34.60 | 2.71 |
4853 | 4949 | 0.383231 | CTCGCTGGGATCAAAATGCC | 59.617 | 55.000 | 0.00 | 0.00 | 43.46 | 4.40 |
4886 | 4984 | 0.253347 | ATGTCATCTGACCCCACCCT | 60.253 | 55.000 | 7.81 | 0.00 | 44.15 | 4.34 |
5122 | 5226 | 7.221450 | AGCTAACAACACTGGTAGTTCAAATA | 58.779 | 34.615 | 0.00 | 0.00 | 43.74 | 1.40 |
5164 | 5268 | 3.261643 | ACAGTGGCAGATACAATGACAGA | 59.738 | 43.478 | 0.00 | 0.00 | 36.02 | 3.41 |
5166 | 5270 | 3.701205 | ACAGTGGCAGATACAATGACA | 57.299 | 42.857 | 0.00 | 0.00 | 37.37 | 3.58 |
5167 | 5271 | 6.316140 | TGAATAACAGTGGCAGATACAATGAC | 59.684 | 38.462 | 0.00 | 0.00 | 37.37 | 3.06 |
5168 | 5272 | 6.413892 | TGAATAACAGTGGCAGATACAATGA | 58.586 | 36.000 | 0.00 | 0.00 | 37.37 | 2.57 |
5169 | 5273 | 6.682423 | TGAATAACAGTGGCAGATACAATG | 57.318 | 37.500 | 0.00 | 0.00 | 39.58 | 2.82 |
5170 | 5274 | 6.932356 | CTGAATAACAGTGGCAGATACAAT | 57.068 | 37.500 | 0.00 | 0.00 | 41.30 | 2.71 |
5229 | 5333 | 9.585099 | TGCTATTTTTGCCACTATTAAAGAATG | 57.415 | 29.630 | 0.00 | 0.00 | 0.00 | 2.67 |
5230 | 5334 | 9.586435 | GTGCTATTTTTGCCACTATTAAAGAAT | 57.414 | 29.630 | 0.00 | 0.00 | 0.00 | 2.40 |
5232 | 5336 | 8.243426 | CAGTGCTATTTTTGCCACTATTAAAGA | 58.757 | 33.333 | 0.00 | 0.00 | 0.00 | 2.52 |
5233 | 5337 | 7.009540 | GCAGTGCTATTTTTGCCACTATTAAAG | 59.990 | 37.037 | 8.18 | 0.00 | 0.00 | 1.85 |
5234 | 5338 | 6.811170 | GCAGTGCTATTTTTGCCACTATTAAA | 59.189 | 34.615 | 8.18 | 0.00 | 0.00 | 1.52 |
5236 | 5340 | 5.417266 | TGCAGTGCTATTTTTGCCACTATTA | 59.583 | 36.000 | 17.60 | 0.00 | 35.75 | 0.98 |
5237 | 5341 | 4.220382 | TGCAGTGCTATTTTTGCCACTATT | 59.780 | 37.500 | 17.60 | 0.00 | 35.75 | 1.73 |
5239 | 5343 | 3.153130 | TGCAGTGCTATTTTTGCCACTA | 58.847 | 40.909 | 17.60 | 0.00 | 35.75 | 2.74 |
5241 | 5345 | 2.437200 | TGCAGTGCTATTTTTGCCAC | 57.563 | 45.000 | 17.60 | 0.00 | 35.75 | 5.01 |
5242 | 5346 | 6.653526 | ATATATGCAGTGCTATTTTTGCCA | 57.346 | 33.333 | 17.60 | 0.00 | 35.75 | 4.92 |
5247 | 5351 | 9.219603 | ACATACGAATATATGCAGTGCTATTTT | 57.780 | 29.630 | 17.60 | 11.98 | 36.21 | 1.82 |
5248 | 5352 | 8.659491 | CACATACGAATATATGCAGTGCTATTT | 58.341 | 33.333 | 17.60 | 6.25 | 36.21 | 1.40 |
5249 | 5353 | 8.034804 | TCACATACGAATATATGCAGTGCTATT | 58.965 | 33.333 | 17.60 | 11.89 | 36.21 | 1.73 |
5250 | 5354 | 7.547227 | TCACATACGAATATATGCAGTGCTAT | 58.453 | 34.615 | 17.60 | 13.31 | 36.21 | 2.97 |
5252 | 5356 | 5.783111 | TCACATACGAATATATGCAGTGCT | 58.217 | 37.500 | 17.60 | 4.48 | 36.21 | 4.40 |
5253 | 5357 | 6.466308 | TTCACATACGAATATATGCAGTGC | 57.534 | 37.500 | 8.58 | 8.58 | 36.21 | 4.40 |
5255 | 5359 | 7.441836 | TCCTTTCACATACGAATATATGCAGT | 58.558 | 34.615 | 0.00 | 0.00 | 36.21 | 4.40 |
5256 | 5360 | 7.412346 | GCTCCTTTCACATACGAATATATGCAG | 60.412 | 40.741 | 0.00 | 0.00 | 36.21 | 4.41 |
5257 | 5361 | 6.368791 | GCTCCTTTCACATACGAATATATGCA | 59.631 | 38.462 | 0.00 | 0.00 | 36.21 | 3.96 |
5258 | 5362 | 6.591834 | AGCTCCTTTCACATACGAATATATGC | 59.408 | 38.462 | 0.00 | 0.00 | 36.21 | 3.14 |
5259 | 5363 | 8.539770 | AAGCTCCTTTCACATACGAATATATG | 57.460 | 34.615 | 0.00 | 0.00 | 38.34 | 1.78 |
5262 | 5366 | 7.484035 | GAAAGCTCCTTTCACATACGAATAT | 57.516 | 36.000 | 11.65 | 0.00 | 46.23 | 1.28 |
5264 | 5368 | 5.803020 | GAAAGCTCCTTTCACATACGAAT | 57.197 | 39.130 | 11.65 | 0.00 | 46.23 | 3.34 |
5323 | 5427 | 9.965824 | CCGCCTTTGACTATTGATAAAATTAAT | 57.034 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
5325 | 5429 | 8.514330 | ACCGCCTTTGACTATTGATAAAATTA | 57.486 | 30.769 | 0.00 | 0.00 | 0.00 | 1.40 |
5326 | 5430 | 7.339466 | AGACCGCCTTTGACTATTGATAAAATT | 59.661 | 33.333 | 0.00 | 0.00 | 0.00 | 1.82 |
5330 | 5434 | 5.353394 | AGACCGCCTTTGACTATTGATAA | 57.647 | 39.130 | 0.00 | 0.00 | 0.00 | 1.75 |
5331 | 5435 | 5.105106 | TCAAGACCGCCTTTGACTATTGATA | 60.105 | 40.000 | 0.00 | 0.00 | 31.42 | 2.15 |
5334 | 5438 | 3.125316 | GTCAAGACCGCCTTTGACTATTG | 59.875 | 47.826 | 13.50 | 0.00 | 33.79 | 1.90 |
5335 | 5439 | 3.244422 | TGTCAAGACCGCCTTTGACTATT | 60.244 | 43.478 | 18.47 | 0.00 | 35.67 | 1.73 |
5337 | 5441 | 1.689813 | TGTCAAGACCGCCTTTGACTA | 59.310 | 47.619 | 18.47 | 8.06 | 35.67 | 2.59 |
5339 | 5443 | 1.305201 | TTGTCAAGACCGCCTTTGAC | 58.695 | 50.000 | 13.75 | 13.75 | 35.45 | 3.18 |
5340 | 5444 | 1.673920 | GTTTGTCAAGACCGCCTTTGA | 59.326 | 47.619 | 0.00 | 0.00 | 31.42 | 2.69 |
5341 | 5445 | 1.596954 | CGTTTGTCAAGACCGCCTTTG | 60.597 | 52.381 | 0.00 | 0.00 | 31.42 | 2.77 |
5342 | 5446 | 0.661020 | CGTTTGTCAAGACCGCCTTT | 59.339 | 50.000 | 0.00 | 0.00 | 31.42 | 3.11 |
5343 | 5447 | 1.782028 | GCGTTTGTCAAGACCGCCTT | 61.782 | 55.000 | 12.60 | 0.00 | 34.84 | 4.35 |
5344 | 5448 | 2.251642 | GCGTTTGTCAAGACCGCCT | 61.252 | 57.895 | 12.60 | 0.00 | 34.84 | 5.52 |
5345 | 5449 | 1.852067 | ATGCGTTTGTCAAGACCGCC | 61.852 | 55.000 | 17.90 | 6.46 | 38.24 | 6.13 |
5346 | 5450 | 0.040425 | AATGCGTTTGTCAAGACCGC | 60.040 | 50.000 | 15.32 | 15.32 | 39.04 | 5.68 |
5347 | 5451 | 2.159707 | CCTAATGCGTTTGTCAAGACCG | 60.160 | 50.000 | 0.00 | 0.00 | 0.00 | 4.79 |
5348 | 5452 | 2.414161 | GCCTAATGCGTTTGTCAAGACC | 60.414 | 50.000 | 0.00 | 0.00 | 0.00 | 3.85 |
5349 | 5453 | 2.414161 | GGCCTAATGCGTTTGTCAAGAC | 60.414 | 50.000 | 0.00 | 0.00 | 42.61 | 3.01 |
5350 | 5454 | 1.810151 | GGCCTAATGCGTTTGTCAAGA | 59.190 | 47.619 | 0.00 | 0.00 | 42.61 | 3.02 |
5351 | 5455 | 1.135402 | GGGCCTAATGCGTTTGTCAAG | 60.135 | 52.381 | 0.84 | 0.00 | 42.61 | 3.02 |
5352 | 5456 | 0.885196 | GGGCCTAATGCGTTTGTCAA | 59.115 | 50.000 | 0.84 | 0.00 | 42.61 | 3.18 |
5354 | 5458 | 2.032680 | TAGGGCCTAATGCGTTTGTC | 57.967 | 50.000 | 11.78 | 0.00 | 42.61 | 3.18 |
5355 | 5459 | 2.729028 | ATAGGGCCTAATGCGTTTGT | 57.271 | 45.000 | 18.91 | 0.00 | 42.61 | 2.83 |
5356 | 5460 | 5.730550 | TCTATATAGGGCCTAATGCGTTTG | 58.269 | 41.667 | 18.91 | 3.25 | 42.61 | 2.93 |
5357 | 5461 | 6.349300 | CATCTATATAGGGCCTAATGCGTTT | 58.651 | 40.000 | 18.91 | 1.12 | 42.61 | 3.60 |
5358 | 5462 | 5.163301 | CCATCTATATAGGGCCTAATGCGTT | 60.163 | 44.000 | 18.91 | 1.94 | 42.61 | 4.84 |
5359 | 5463 | 4.345257 | CCATCTATATAGGGCCTAATGCGT | 59.655 | 45.833 | 18.91 | 2.76 | 42.61 | 5.24 |
5360 | 5464 | 4.588951 | TCCATCTATATAGGGCCTAATGCG | 59.411 | 45.833 | 18.91 | 10.04 | 42.61 | 4.73 |
5361 | 5465 | 6.465035 | CCTTCCATCTATATAGGGCCTAATGC | 60.465 | 46.154 | 18.91 | 0.00 | 40.16 | 3.56 |
5362 | 5466 | 6.846505 | TCCTTCCATCTATATAGGGCCTAATG | 59.153 | 42.308 | 18.91 | 15.42 | 0.00 | 1.90 |
5363 | 5467 | 7.009960 | TCCTTCCATCTATATAGGGCCTAAT | 57.990 | 40.000 | 18.91 | 14.19 | 0.00 | 1.73 |
5364 | 5468 | 6.432190 | TCCTTCCATCTATATAGGGCCTAA | 57.568 | 41.667 | 18.91 | 7.61 | 0.00 | 2.69 |
5366 | 5470 | 4.327332 | CCTCCTTCCATCTATATAGGGCCT | 60.327 | 50.000 | 12.58 | 12.58 | 0.00 | 5.19 |
5367 | 5471 | 3.970640 | CCTCCTTCCATCTATATAGGGCC | 59.029 | 52.174 | 9.89 | 0.00 | 0.00 | 5.80 |
5369 | 5473 | 5.042979 | ACTCCCTCCTTCCATCTATATAGGG | 60.043 | 48.000 | 9.89 | 4.49 | 43.23 | 3.53 |
5370 | 5474 | 5.896678 | CACTCCCTCCTTCCATCTATATAGG | 59.103 | 48.000 | 9.89 | 0.00 | 0.00 | 2.57 |
5371 | 5475 | 5.362430 | GCACTCCCTCCTTCCATCTATATAG | 59.638 | 48.000 | 3.10 | 3.10 | 0.00 | 1.31 |
5372 | 5476 | 5.016782 | AGCACTCCCTCCTTCCATCTATATA | 59.983 | 44.000 | 0.00 | 0.00 | 0.00 | 0.86 |
5373 | 5477 | 4.100373 | GCACTCCCTCCTTCCATCTATAT | 58.900 | 47.826 | 0.00 | 0.00 | 0.00 | 0.86 |
5374 | 5478 | 3.142977 | AGCACTCCCTCCTTCCATCTATA | 59.857 | 47.826 | 0.00 | 0.00 | 0.00 | 1.31 |
5375 | 5479 | 2.090267 | AGCACTCCCTCCTTCCATCTAT | 60.090 | 50.000 | 0.00 | 0.00 | 0.00 | 1.98 |
5376 | 5480 | 1.292242 | AGCACTCCCTCCTTCCATCTA | 59.708 | 52.381 | 0.00 | 0.00 | 0.00 | 1.98 |
5377 | 5481 | 0.043940 | AGCACTCCCTCCTTCCATCT | 59.956 | 55.000 | 0.00 | 0.00 | 0.00 | 2.90 |
5379 | 5483 | 1.277580 | CCAGCACTCCCTCCTTCCAT | 61.278 | 60.000 | 0.00 | 0.00 | 0.00 | 3.41 |
5380 | 5484 | 1.920325 | CCAGCACTCCCTCCTTCCA | 60.920 | 63.158 | 0.00 | 0.00 | 0.00 | 3.53 |
5381 | 5485 | 1.492993 | AACCAGCACTCCCTCCTTCC | 61.493 | 60.000 | 0.00 | 0.00 | 0.00 | 3.46 |
5382 | 5486 | 0.402121 | AAACCAGCACTCCCTCCTTC | 59.598 | 55.000 | 0.00 | 0.00 | 0.00 | 3.46 |
5384 | 5488 | 0.853530 | AAAAACCAGCACTCCCTCCT | 59.146 | 50.000 | 0.00 | 0.00 | 0.00 | 3.69 |
5386 | 5490 | 1.981256 | TCAAAAACCAGCACTCCCTC | 58.019 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
5388 | 5492 | 1.341209 | CCTTCAAAAACCAGCACTCCC | 59.659 | 52.381 | 0.00 | 0.00 | 0.00 | 4.30 |
5389 | 5493 | 1.341209 | CCCTTCAAAAACCAGCACTCC | 59.659 | 52.381 | 0.00 | 0.00 | 0.00 | 3.85 |
5390 | 5494 | 2.306847 | TCCCTTCAAAAACCAGCACTC | 58.693 | 47.619 | 0.00 | 0.00 | 0.00 | 3.51 |
5391 | 5495 | 2.452600 | TCCCTTCAAAAACCAGCACT | 57.547 | 45.000 | 0.00 | 0.00 | 0.00 | 4.40 |
5392 | 5496 | 3.535280 | TTTCCCTTCAAAAACCAGCAC | 57.465 | 42.857 | 0.00 | 0.00 | 0.00 | 4.40 |
5393 | 5497 | 4.769345 | AATTTCCCTTCAAAAACCAGCA | 57.231 | 36.364 | 0.00 | 0.00 | 0.00 | 4.41 |
5394 | 5498 | 4.515191 | GGAAATTTCCCTTCAAAAACCAGC | 59.485 | 41.667 | 24.44 | 0.00 | 41.62 | 4.85 |
5409 | 5689 | 4.089361 | AGGTTGAGGTGGATGGAAATTTC | 58.911 | 43.478 | 9.83 | 9.83 | 0.00 | 2.17 |
5412 | 5692 | 2.649312 | TGAGGTTGAGGTGGATGGAAAT | 59.351 | 45.455 | 0.00 | 0.00 | 0.00 | 2.17 |
5416 | 5696 | 1.283029 | ACATGAGGTTGAGGTGGATGG | 59.717 | 52.381 | 0.00 | 0.00 | 0.00 | 3.51 |
5417 | 5697 | 2.026915 | TCACATGAGGTTGAGGTGGATG | 60.027 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
5418 | 5698 | 2.269023 | TCACATGAGGTTGAGGTGGAT | 58.731 | 47.619 | 0.00 | 0.00 | 0.00 | 3.41 |
5419 | 5699 | 1.728323 | TCACATGAGGTTGAGGTGGA | 58.272 | 50.000 | 0.00 | 0.00 | 0.00 | 4.02 |
5420 | 5700 | 2.038952 | TCTTCACATGAGGTTGAGGTGG | 59.961 | 50.000 | 0.00 | 0.00 | 0.00 | 4.61 |
5422 | 5702 | 4.566488 | GGATTCTTCACATGAGGTTGAGGT | 60.566 | 45.833 | 0.00 | 0.00 | 0.00 | 3.85 |
5423 | 5703 | 3.944015 | GGATTCTTCACATGAGGTTGAGG | 59.056 | 47.826 | 0.00 | 0.00 | 0.00 | 3.86 |
5427 | 5707 | 4.223032 | ACGTAGGATTCTTCACATGAGGTT | 59.777 | 41.667 | 0.00 | 0.00 | 0.00 | 3.50 |
5436 | 5716 | 7.782049 | ACATCTTCAATACGTAGGATTCTTCA | 58.218 | 34.615 | 0.08 | 0.00 | 0.00 | 3.02 |
5461 | 5741 | 3.489355 | ACACAGAAATGGAGTTGCATGA | 58.511 | 40.909 | 0.00 | 0.00 | 0.00 | 3.07 |
5467 | 5747 | 8.697507 | ATAGAGAAAAACACAGAAATGGAGTT | 57.302 | 30.769 | 0.00 | 0.00 | 0.00 | 3.01 |
5495 | 5775 | 8.219546 | TGATTCGCAGGATTTGTAAAATATGA | 57.780 | 30.769 | 0.00 | 0.00 | 0.00 | 2.15 |
5525 | 5805 | 2.523245 | TGCATACAAACATTCAGGGCA | 58.477 | 42.857 | 0.00 | 0.00 | 0.00 | 5.36 |
5526 | 5806 | 3.450578 | CATGCATACAAACATTCAGGGC | 58.549 | 45.455 | 0.00 | 0.00 | 0.00 | 5.19 |
5528 | 5808 | 4.112716 | TGCATGCATACAAACATTCAGG | 57.887 | 40.909 | 18.46 | 0.00 | 0.00 | 3.86 |
5544 | 5824 | 4.163552 | CACAGCTGTCACTTATTTGCATG | 58.836 | 43.478 | 18.64 | 0.00 | 0.00 | 4.06 |
5551 | 5831 | 3.213506 | TGCAAACACAGCTGTCACTTAT | 58.786 | 40.909 | 18.64 | 0.00 | 0.00 | 1.73 |
5552 | 5832 | 2.637947 | TGCAAACACAGCTGTCACTTA | 58.362 | 42.857 | 18.64 | 0.00 | 0.00 | 2.24 |
5553 | 5833 | 1.462616 | TGCAAACACAGCTGTCACTT | 58.537 | 45.000 | 18.64 | 7.59 | 0.00 | 3.16 |
5554 | 5834 | 1.402968 | CTTGCAAACACAGCTGTCACT | 59.597 | 47.619 | 18.64 | 0.56 | 0.00 | 3.41 |
5555 | 5835 | 1.534595 | CCTTGCAAACACAGCTGTCAC | 60.535 | 52.381 | 18.64 | 5.28 | 0.00 | 3.67 |
5556 | 5836 | 0.740149 | CCTTGCAAACACAGCTGTCA | 59.260 | 50.000 | 18.64 | 8.91 | 0.00 | 3.58 |
5557 | 5837 | 0.595825 | GCCTTGCAAACACAGCTGTC | 60.596 | 55.000 | 18.64 | 5.91 | 0.00 | 3.51 |
5558 | 5838 | 1.321805 | TGCCTTGCAAACACAGCTGT | 61.322 | 50.000 | 15.25 | 15.25 | 34.76 | 4.40 |
5559 | 5839 | 0.032952 | ATGCCTTGCAAACACAGCTG | 59.967 | 50.000 | 13.48 | 13.48 | 43.62 | 4.24 |
5560 | 5840 | 2.433217 | ATGCCTTGCAAACACAGCT | 58.567 | 47.368 | 0.00 | 0.00 | 43.62 | 4.24 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.