Multiple sequence alignment - TraesCS4A01G301100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G301100 chr4A 100.000 4005 0 0 1 4005 598438212 598434208 0.000000e+00 7396.0
1 TraesCS4A01G301100 chr4A 81.165 515 89 7 1048 1561 632989712 632990219 1.340000e-109 407.0
2 TraesCS4A01G301100 chr4A 80.218 551 101 7 1048 1597 632999846 632999303 1.340000e-109 407.0
3 TraesCS4A01G301100 chr4A 73.886 1122 232 47 1048 2149 685834820 685835900 3.750000e-105 392.0
4 TraesCS4A01G301100 chr4B 93.581 2913 136 24 143 3025 9384942 9387833 0.000000e+00 4296.0
5 TraesCS4A01G301100 chr4B 86.008 243 17 6 3333 3558 9357612 9357370 1.110000e-60 244.0
6 TraesCS4A01G301100 chr4B 90.526 190 10 1 3824 4005 9388557 9388746 1.110000e-60 244.0
7 TraesCS4A01G301100 chr4B 89.205 176 16 2 3409 3581 9388209 9388384 2.420000e-52 217.0
8 TraesCS4A01G301100 chr4B 88.525 183 5 6 3153 3333 9387870 9388038 1.460000e-49 207.0
9 TraesCS4A01G301100 chr4B 87.273 110 14 0 1681 1790 624862334 624862225 4.200000e-25 126.0
10 TraesCS4A01G301100 chr4B 100.000 31 0 0 3919 3949 9357279 9357249 1.550000e-04 58.4
11 TraesCS4A01G301100 chr4D 96.581 2106 50 11 74 2168 5291322 5289228 0.000000e+00 3470.0
12 TraesCS4A01G301100 chr4D 93.293 656 26 8 2431 3076 5288750 5288103 0.000000e+00 952.0
13 TraesCS4A01G301100 chr4D 93.333 225 2 6 3116 3333 5288110 5287892 1.800000e-83 320.0
14 TraesCS4A01G301100 chr4D 90.456 241 20 3 3581 3820 435195107 435194869 8.360000e-82 315.0
15 TraesCS4A01G301100 chr4D 87.179 195 17 1 3811 3997 5287243 5287049 8.720000e-52 215.0
16 TraesCS4A01G301100 chr4D 77.848 158 10 11 3816 3960 5236153 5236008 1.540000e-09 75.0
17 TraesCS4A01G301100 chr4D 93.878 49 3 0 112 160 435008540 435008492 1.540000e-09 75.0
18 TraesCS4A01G301100 chr5B 82.136 515 84 7 1048 1561 677537460 677537967 6.150000e-118 435.0
19 TraesCS4A01G301100 chr5B 81.942 515 85 7 1084 1597 677545001 677544494 2.860000e-116 429.0
20 TraesCS4A01G301100 chr5B 79.820 555 96 12 1048 1597 643460763 643461306 1.350000e-104 390.0
21 TraesCS4A01G301100 chr5B 95.122 41 2 0 113 153 659763668 659763708 9.290000e-07 65.8
22 TraesCS4A01G301100 chr5D 81.748 515 86 7 1048 1561 537088083 537088590 1.330000e-114 424.0
23 TraesCS4A01G301100 chr5D 81.274 518 88 8 1048 1564 537162868 537162359 1.040000e-110 411.0
24 TraesCS4A01G301100 chr5D 79.820 555 96 12 1048 1597 512534366 512534909 1.350000e-104 390.0
25 TraesCS4A01G301100 chr5D 90.688 247 18 3 3577 3820 504155247 504155003 1.390000e-84 324.0
26 TraesCS4A01G301100 chr2D 93.617 235 13 2 3576 3810 532188173 532187941 2.290000e-92 350.0
27 TraesCS4A01G301100 chr2D 91.632 239 17 3 3581 3819 347816313 347816078 1.070000e-85 327.0
28 TraesCS4A01G301100 chr2D 84.167 120 18 1 2165 2283 398096228 398096347 9.100000e-22 115.0
29 TraesCS4A01G301100 chr3D 92.946 241 13 3 3578 3818 84502837 84502601 8.240000e-92 348.0
30 TraesCS4A01G301100 chr7D 93.133 233 15 1 3581 3813 267558150 267557919 1.380000e-89 340.0
31 TraesCS4A01G301100 chr7D 78.439 269 28 17 2163 2407 334860313 334860575 8.970000e-32 148.0
32 TraesCS4A01G301100 chr3B 93.421 228 14 1 3583 3810 828797060 828797286 1.780000e-88 337.0
33 TraesCS4A01G301100 chr3B 85.000 120 17 1 2165 2283 96960657 96960776 1.950000e-23 121.0
34 TraesCS4A01G301100 chr3B 85.714 112 16 0 2165 2276 129138282 129138171 7.030000e-23 119.0
35 TraesCS4A01G301100 chr3B 91.837 49 4 0 109 157 766065113 766065161 7.180000e-08 69.4
36 TraesCS4A01G301100 chr7B 91.416 233 19 1 3581 3813 33381068 33380837 6.460000e-83 318.0
37 TraesCS4A01G301100 chr5A 91.667 228 19 0 3583 3810 83638578 83638805 2.320000e-82 316.0
38 TraesCS4A01G301100 chr5A 87.121 132 15 2 2154 2283 464193670 464193801 8.970000e-32 148.0
39 TraesCS4A01G301100 chr5A 93.478 46 3 0 112 157 562412582 562412537 7.180000e-08 69.4
40 TraesCS4A01G301100 chr3A 87.611 113 14 0 2164 2276 568577622 568577734 9.030000e-27 132.0
41 TraesCS4A01G301100 chr1D 86.842 114 14 1 2163 2276 388315315 388315203 4.200000e-25 126.0
42 TraesCS4A01G301100 chr1D 93.878 49 3 0 112 160 467932715 467932667 1.540000e-09 75.0
43 TraesCS4A01G301100 chr7A 83.929 112 18 0 2172 2283 136772337 136772226 1.520000e-19 108.0
44 TraesCS4A01G301100 chr6D 93.878 49 3 0 112 160 457553177 457553129 1.540000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G301100 chr4A 598434208 598438212 4004 True 7396.00 7396 100.00000 1 4005 1 chr4A.!!$R1 4004
1 TraesCS4A01G301100 chr4A 632989712 632990219 507 False 407.00 407 81.16500 1048 1561 1 chr4A.!!$F1 513
2 TraesCS4A01G301100 chr4A 632999303 632999846 543 True 407.00 407 80.21800 1048 1597 1 chr4A.!!$R2 549
3 TraesCS4A01G301100 chr4A 685834820 685835900 1080 False 392.00 392 73.88600 1048 2149 1 chr4A.!!$F2 1101
4 TraesCS4A01G301100 chr4B 9384942 9388746 3804 False 1241.00 4296 90.45925 143 4005 4 chr4B.!!$F1 3862
5 TraesCS4A01G301100 chr4D 5287049 5291322 4273 True 1239.25 3470 92.59650 74 3997 4 chr4D.!!$R4 3923
6 TraesCS4A01G301100 chr5B 677537460 677537967 507 False 435.00 435 82.13600 1048 1561 1 chr5B.!!$F3 513
7 TraesCS4A01G301100 chr5B 677544494 677545001 507 True 429.00 429 81.94200 1084 1597 1 chr5B.!!$R1 513
8 TraesCS4A01G301100 chr5B 643460763 643461306 543 False 390.00 390 79.82000 1048 1597 1 chr5B.!!$F1 549
9 TraesCS4A01G301100 chr5D 537088083 537088590 507 False 424.00 424 81.74800 1048 1561 1 chr5D.!!$F2 513
10 TraesCS4A01G301100 chr5D 537162359 537162868 509 True 411.00 411 81.27400 1048 1564 1 chr5D.!!$R2 516
11 TraesCS4A01G301100 chr5D 512534366 512534909 543 False 390.00 390 79.82000 1048 1597 1 chr5D.!!$F1 549

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
636 652 0.179015 TGGGAACGGCTGCTTGTTTA 60.179 50.000 11.04 1.47 0.00 2.01 F
915 936 0.810823 GCAAGCAGCAAAGCACCAAA 60.811 50.000 0.00 0.00 44.79 3.28 F
2118 2147 1.377333 CCTCTTCGGCACTTTCCCC 60.377 63.158 0.00 0.00 0.00 4.81 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2044 2073 0.320334 TCTTTGAGCGCGTTCATGGA 60.320 50.0 26.28 21.77 0.0 3.41 R
2608 3124 1.914634 AGAAGAATGTGAGCGCGTAG 58.085 50.0 8.43 0.00 0.0 3.51 R
3581 4210 0.029300 CCACTGAACCAAACACGCTG 59.971 55.0 0.00 0.00 0.0 5.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.755266 ACCGACAAAATATGGCTCTACT 57.245 40.909 0.00 0.00 33.51 2.57
22 23 5.099042 ACCGACAAAATATGGCTCTACTT 57.901 39.130 0.00 0.00 33.51 2.24
23 24 6.229936 ACCGACAAAATATGGCTCTACTTA 57.770 37.500 0.00 0.00 33.51 2.24
24 25 6.827727 ACCGACAAAATATGGCTCTACTTAT 58.172 36.000 0.00 0.00 33.51 1.73
25 26 6.929606 ACCGACAAAATATGGCTCTACTTATC 59.070 38.462 0.00 0.00 33.51 1.75
26 27 6.929049 CCGACAAAATATGGCTCTACTTATCA 59.071 38.462 0.00 0.00 33.51 2.15
27 28 7.116948 CCGACAAAATATGGCTCTACTTATCAG 59.883 40.741 0.00 0.00 33.51 2.90
28 29 7.359598 CGACAAAATATGGCTCTACTTATCAGC 60.360 40.741 0.00 0.00 33.51 4.26
29 30 7.512992 ACAAAATATGGCTCTACTTATCAGCT 58.487 34.615 0.00 0.00 33.38 4.24
30 31 7.995488 ACAAAATATGGCTCTACTTATCAGCTT 59.005 33.333 0.00 0.00 33.38 3.74
31 32 9.494271 CAAAATATGGCTCTACTTATCAGCTTA 57.506 33.333 0.00 0.00 33.38 3.09
35 36 6.274157 TGGCTCTACTTATCAGCTTATAGC 57.726 41.667 0.00 0.00 42.84 2.97
36 37 5.775195 TGGCTCTACTTATCAGCTTATAGCA 59.225 40.000 1.09 0.00 45.56 3.49
37 38 6.267699 TGGCTCTACTTATCAGCTTATAGCAA 59.732 38.462 1.09 0.00 45.56 3.91
38 39 7.038729 TGGCTCTACTTATCAGCTTATAGCAAT 60.039 37.037 1.09 0.00 45.56 3.56
39 40 8.470805 GGCTCTACTTATCAGCTTATAGCAATA 58.529 37.037 1.09 0.00 45.56 1.90
40 41 9.296400 GCTCTACTTATCAGCTTATAGCAATAC 57.704 37.037 1.09 0.00 45.56 1.89
41 42 9.796120 CTCTACTTATCAGCTTATAGCAATACC 57.204 37.037 1.09 0.00 45.56 2.73
42 43 9.535170 TCTACTTATCAGCTTATAGCAATACCT 57.465 33.333 1.09 0.00 45.56 3.08
45 46 9.090103 ACTTATCAGCTTATAGCAATACCTACA 57.910 33.333 1.09 0.00 45.56 2.74
46 47 9.929180 CTTATCAGCTTATAGCAATACCTACAA 57.071 33.333 1.09 0.00 45.56 2.41
49 50 8.833231 TCAGCTTATAGCAATACCTACAATTC 57.167 34.615 1.09 0.00 45.56 2.17
50 51 8.651389 TCAGCTTATAGCAATACCTACAATTCT 58.349 33.333 1.09 0.00 45.56 2.40
51 52 9.929180 CAGCTTATAGCAATACCTACAATTCTA 57.071 33.333 1.09 0.00 45.56 2.10
59 60 9.257651 AGCAATACCTACAATTCTATCGTAAAC 57.742 33.333 0.00 0.00 0.00 2.01
60 61 9.037737 GCAATACCTACAATTCTATCGTAAACA 57.962 33.333 0.00 0.00 0.00 2.83
63 64 9.706691 ATACCTACAATTCTATCGTAAACATGG 57.293 33.333 0.00 0.00 0.00 3.66
64 65 7.788026 ACCTACAATTCTATCGTAAACATGGA 58.212 34.615 0.00 0.00 0.00 3.41
65 66 7.709613 ACCTACAATTCTATCGTAAACATGGAC 59.290 37.037 0.00 0.00 0.00 4.02
66 67 6.583912 ACAATTCTATCGTAAACATGGACG 57.416 37.500 9.92 9.92 40.43 4.79
70 71 3.024423 TCGTAAACATGGACGAGCG 57.976 52.632 13.64 3.68 42.80 5.03
71 72 0.241749 TCGTAAACATGGACGAGCGT 59.758 50.000 13.64 0.00 42.80 5.07
72 73 0.365523 CGTAAACATGGACGAGCGTG 59.634 55.000 10.50 0.00 41.60 5.34
73 74 0.719465 GTAAACATGGACGAGCGTGG 59.281 55.000 0.00 0.00 0.00 4.94
74 75 1.017177 TAAACATGGACGAGCGTGGC 61.017 55.000 0.00 0.00 0.00 5.01
75 76 3.529341 AACATGGACGAGCGTGGCA 62.529 57.895 0.00 0.00 0.00 4.92
76 77 2.741985 CATGGACGAGCGTGGCAA 60.742 61.111 0.00 0.00 0.00 4.52
77 78 2.108514 CATGGACGAGCGTGGCAAT 61.109 57.895 0.00 0.00 0.00 3.56
78 79 2.108514 ATGGACGAGCGTGGCAATG 61.109 57.895 0.00 0.00 0.00 2.82
79 80 2.742372 GGACGAGCGTGGCAATGT 60.742 61.111 0.00 0.00 0.00 2.71
80 81 2.476051 GACGAGCGTGGCAATGTG 59.524 61.111 0.00 0.00 0.00 3.21
81 82 3.651480 GACGAGCGTGGCAATGTGC 62.651 63.158 0.00 0.00 44.08 4.57
82 83 4.799473 CGAGCGTGGCAATGTGCG 62.799 66.667 0.00 0.00 46.21 5.34
92 93 1.514657 CAATGTGCGCCATCAACGG 60.515 57.895 4.18 0.00 31.75 4.44
94 95 0.675208 AATGTGCGCCATCAACGGTA 60.675 50.000 4.18 0.00 31.75 4.02
115 116 1.037493 AGTACTCGTTGACAGTGGCA 58.963 50.000 0.00 0.00 0.00 4.92
124 125 1.739562 GACAGTGGCAGAGCTTCGG 60.740 63.158 0.00 0.00 0.00 4.30
162 163 3.966543 CCCGCCCAGGTCAGGTTT 61.967 66.667 0.00 0.00 38.74 3.27
277 278 1.221414 GCTAGTGATCGAATGGCCAC 58.779 55.000 8.16 0.00 0.00 5.01
304 305 0.831307 ACCGGGACTCTGCTAAATCC 59.169 55.000 6.32 0.00 0.00 3.01
588 604 4.903638 TTCACGAGAGACAAAATAAGCG 57.096 40.909 0.00 0.00 0.00 4.68
635 651 0.827507 ATGGGAACGGCTGCTTGTTT 60.828 50.000 11.04 0.00 0.00 2.83
636 652 0.179015 TGGGAACGGCTGCTTGTTTA 60.179 50.000 11.04 1.47 0.00 2.01
637 653 1.173913 GGGAACGGCTGCTTGTTTAT 58.826 50.000 11.04 0.00 0.00 1.40
638 654 1.544246 GGGAACGGCTGCTTGTTTATT 59.456 47.619 11.04 0.00 0.00 1.40
639 655 2.029380 GGGAACGGCTGCTTGTTTATTT 60.029 45.455 11.04 0.00 0.00 1.40
694 715 1.533731 GTGTATGTTTGTCCCGGTGTG 59.466 52.381 0.00 0.00 0.00 3.82
730 751 0.881118 ATGCCCGTGTGTGTTCAATC 59.119 50.000 0.00 0.00 0.00 2.67
890 911 3.865745 CGGAGCACAGTTATAAGAACCAG 59.134 47.826 0.00 0.00 0.00 4.00
893 914 3.587506 AGCACAGTTATAAGAACCAGGGT 59.412 43.478 0.00 0.00 0.00 4.34
915 936 0.810823 GCAAGCAGCAAAGCACCAAA 60.811 50.000 0.00 0.00 44.79 3.28
916 937 1.873698 CAAGCAGCAAAGCACCAAAT 58.126 45.000 0.00 0.00 36.85 2.32
917 938 2.215196 CAAGCAGCAAAGCACCAAATT 58.785 42.857 0.00 0.00 36.85 1.82
918 939 3.391965 CAAGCAGCAAAGCACCAAATTA 58.608 40.909 0.00 0.00 36.85 1.40
982 1003 3.799366 TCATAAAAGCGCCCTTTATCGA 58.201 40.909 17.70 15.59 40.30 3.59
2118 2147 1.377333 CCTCTTCGGCACTTTCCCC 60.377 63.158 0.00 0.00 0.00 4.81
2121 2150 3.546714 CTTCGGCACTTTCCCCGGT 62.547 63.158 0.00 0.00 44.45 5.28
2184 2213 2.225343 TGTACTCCCTCCGGTCCTTTTA 60.225 50.000 0.00 0.00 0.00 1.52
2207 2236 9.820229 TTTAAGTCAGCATATAAGTTTTGTTCG 57.180 29.630 0.00 0.00 0.00 3.95
2208 2237 7.667043 AAGTCAGCATATAAGTTTTGTTCGA 57.333 32.000 0.00 0.00 0.00 3.71
2210 2239 7.743104 AGTCAGCATATAAGTTTTGTTCGAAG 58.257 34.615 0.00 0.00 0.00 3.79
2215 2245 8.015658 AGCATATAAGTTTTGTTCGAAGTCAAC 58.984 33.333 0.00 1.51 0.00 3.18
2226 2256 5.179929 TGTTCGAAGTCAACGTATCTCTACA 59.820 40.000 0.00 0.00 0.00 2.74
2240 2270 8.784994 ACGTATCTCTACATTCATCGAACTTAT 58.215 33.333 0.00 0.00 0.00 1.73
2273 2305 9.807649 AAGTATCAATATTCACAAAGCCAAATC 57.192 29.630 0.00 0.00 0.00 2.17
2285 2317 9.638239 TCACAAAGCCAAATCAATATAGTTTTC 57.362 29.630 0.00 0.00 0.00 2.29
2286 2318 8.872845 CACAAAGCCAAATCAATATAGTTTTCC 58.127 33.333 0.00 0.00 0.00 3.13
2371 2424 5.083533 TGCAAAGTTTGACTGGACAAAAT 57.916 34.783 19.82 0.00 40.62 1.82
2372 2425 5.108517 TGCAAAGTTTGACTGGACAAAATC 58.891 37.500 19.82 0.00 40.62 2.17
2455 2967 2.027688 CGCGATCGACTTGGTTAGTTTC 59.972 50.000 21.57 0.00 37.17 2.78
2608 3124 2.514824 GCCCTGTTCGCCATCCTC 60.515 66.667 0.00 0.00 0.00 3.71
2863 3379 0.114560 TCTTCACCTTCCTCGTCCCT 59.885 55.000 0.00 0.00 0.00 4.20
2947 3463 0.962356 CTGGGCATGTGGACAAGGAC 60.962 60.000 0.00 0.00 0.00 3.85
2953 3469 0.677288 ATGTGGACAAGGACGTCGAA 59.323 50.000 9.92 0.00 36.73 3.71
3005 3521 3.003689 GCCACCATCGTCCATGAATTAAG 59.996 47.826 0.00 0.00 33.80 1.85
3006 3522 4.199310 CCACCATCGTCCATGAATTAAGT 58.801 43.478 0.00 0.00 33.80 2.24
3007 3523 5.364778 CCACCATCGTCCATGAATTAAGTA 58.635 41.667 0.00 0.00 33.80 2.24
3011 3527 6.017109 ACCATCGTCCATGAATTAAGTAATGC 60.017 38.462 0.00 0.00 33.80 3.56
3012 3528 6.017192 CCATCGTCCATGAATTAAGTAATGCA 60.017 38.462 0.00 0.00 35.77 3.96
3022 3542 7.463544 TGAATTAAGTAATGCATGAGAACACG 58.536 34.615 0.00 0.00 0.00 4.49
3029 3549 0.518636 GCATGAGAACACGCACACAT 59.481 50.000 0.00 0.00 35.20 3.21
3041 3561 3.581156 ACACATGCACGCACGCAA 61.581 55.556 0.60 0.00 46.87 4.85
3192 3716 2.749076 TGCATGCTACTTAAGTTGCCAG 59.251 45.455 30.38 24.36 44.16 4.85
3193 3717 2.098117 GCATGCTACTTAAGTTGCCAGG 59.902 50.000 30.38 22.31 44.16 4.45
3194 3718 3.347216 CATGCTACTTAAGTTGCCAGGT 58.653 45.455 30.38 16.13 44.16 4.00
3330 3855 2.947652 AGTGTGGATGTATGAGCATTGC 59.052 45.455 0.00 0.00 0.00 3.56
3331 3856 2.947652 GTGTGGATGTATGAGCATTGCT 59.052 45.455 11.79 11.79 43.88 3.91
3332 3857 4.129380 GTGTGGATGTATGAGCATTGCTA 58.871 43.478 11.96 0.75 39.88 3.49
3333 3858 4.024556 GTGTGGATGTATGAGCATTGCTAC 60.025 45.833 11.96 7.12 39.88 3.58
3334 3859 4.141642 TGTGGATGTATGAGCATTGCTACT 60.142 41.667 11.96 4.43 39.88 2.57
3335 3860 4.818546 GTGGATGTATGAGCATTGCTACTT 59.181 41.667 11.96 4.71 39.88 2.24
3336 3861 5.297776 GTGGATGTATGAGCATTGCTACTTT 59.702 40.000 11.96 0.00 39.88 2.66
3339 3864 8.374743 TGGATGTATGAGCATTGCTACTTTATA 58.625 33.333 11.96 3.52 39.88 0.98
3340 3865 9.219603 GGATGTATGAGCATTGCTACTTTATAA 57.780 33.333 11.96 0.00 39.88 0.98
3343 3868 9.777297 TGTATGAGCATTGCTACTTTATAATCA 57.223 29.630 11.96 1.73 39.88 2.57
3346 3871 8.681486 TGAGCATTGCTACTTTATAATCATGT 57.319 30.769 11.96 0.00 39.88 3.21
3386 4012 9.800433 TTAAATAACCATGTCAAATATGTGCTG 57.200 29.630 0.00 0.00 0.00 4.41
3392 4018 6.424509 ACCATGTCAAATATGTGCTGTTTTTG 59.575 34.615 0.00 0.00 0.00 2.44
3393 4019 6.424509 CCATGTCAAATATGTGCTGTTTTTGT 59.575 34.615 0.00 0.00 0.00 2.83
3397 4023 6.628461 GTCAAATATGTGCTGTTTTTGTTTGC 59.372 34.615 0.00 0.00 0.00 3.68
3398 4024 4.970472 ATATGTGCTGTTTTTGTTTGCG 57.030 36.364 0.00 0.00 0.00 4.85
3400 4026 0.649993 GTGCTGTTTTTGTTTGCGGG 59.350 50.000 0.00 0.00 0.00 6.13
3402 4028 1.137872 TGCTGTTTTTGTTTGCGGGAT 59.862 42.857 0.00 0.00 0.00 3.85
3406 4032 4.226761 CTGTTTTTGTTTGCGGGATAGAC 58.773 43.478 0.00 0.00 0.00 2.59
3407 4033 3.632604 TGTTTTTGTTTGCGGGATAGACA 59.367 39.130 0.00 0.00 0.00 3.41
3413 4039 7.867305 TTTGTTTGCGGGATAGACATAAATA 57.133 32.000 0.00 0.00 0.00 1.40
3475 4104 1.905637 ACCAAATCTCCAACCGAACC 58.094 50.000 0.00 0.00 0.00 3.62
3495 4124 4.952460 ACCGCTAGAAAGAACAAACTACA 58.048 39.130 0.00 0.00 0.00 2.74
3500 4129 7.707035 CCGCTAGAAAGAACAAACTACATAGAT 59.293 37.037 0.00 0.00 0.00 1.98
3523 4152 9.075678 AGATCATATAATCCTGCTTTTTGGAAG 57.924 33.333 0.00 0.00 35.81 3.46
3527 4156 4.607293 AATCCTGCTTTTTGGAAGGAAC 57.393 40.909 0.00 0.00 43.66 3.62
3528 4157 3.025322 TCCTGCTTTTTGGAAGGAACA 57.975 42.857 0.00 0.00 38.06 3.18
3529 4158 3.370104 TCCTGCTTTTTGGAAGGAACAA 58.630 40.909 0.00 0.00 38.06 2.83
3549 4178 6.569179 ACAATTAAGCTGGTAAACATTCGT 57.431 33.333 0.00 0.00 0.00 3.85
3574 4203 6.600882 TTAAATCGAGTGGGTTTAGACTCT 57.399 37.500 0.00 0.00 37.12 3.24
3581 4210 4.083565 AGTGGGTTTAGACTCTCTCTGAC 58.916 47.826 0.00 0.00 0.00 3.51
3582 4211 3.827302 GTGGGTTTAGACTCTCTCTGACA 59.173 47.826 0.00 0.00 0.00 3.58
3585 4214 3.426963 GGTTTAGACTCTCTCTGACAGCG 60.427 52.174 0.00 0.00 0.00 5.18
3586 4215 2.772077 TAGACTCTCTCTGACAGCGT 57.228 50.000 0.00 0.00 0.00 5.07
3587 4216 1.164411 AGACTCTCTCTGACAGCGTG 58.836 55.000 0.00 0.00 0.00 5.34
3591 4220 2.057316 CTCTCTCTGACAGCGTGTTTG 58.943 52.381 0.00 0.00 0.00 2.93
3592 4221 1.143305 CTCTCTGACAGCGTGTTTGG 58.857 55.000 0.00 0.00 0.00 3.28
3595 4224 1.261619 CTCTGACAGCGTGTTTGGTTC 59.738 52.381 0.00 0.00 0.00 3.62
3596 4225 1.013596 CTGACAGCGTGTTTGGTTCA 58.986 50.000 0.00 0.00 0.00 3.18
3598 4227 1.014352 GACAGCGTGTTTGGTTCAGT 58.986 50.000 0.00 0.00 0.00 3.41
3599 4228 0.732571 ACAGCGTGTTTGGTTCAGTG 59.267 50.000 0.00 0.00 0.00 3.66
3600 4229 0.029300 CAGCGTGTTTGGTTCAGTGG 59.971 55.000 0.00 0.00 0.00 4.00
3605 4234 3.371168 CGTGTTTGGTTCAGTGGAATTG 58.629 45.455 0.00 0.00 35.05 2.32
3606 4235 3.066064 CGTGTTTGGTTCAGTGGAATTGA 59.934 43.478 0.00 0.00 35.05 2.57
3608 4237 5.043248 GTGTTTGGTTCAGTGGAATTGAAG 58.957 41.667 0.00 0.00 43.49 3.02
3609 4238 4.952957 TGTTTGGTTCAGTGGAATTGAAGA 59.047 37.500 0.00 0.00 43.49 2.87
3610 4239 5.067674 TGTTTGGTTCAGTGGAATTGAAGAG 59.932 40.000 0.00 0.00 43.49 2.85
3611 4240 4.705110 TGGTTCAGTGGAATTGAAGAGA 57.295 40.909 0.00 0.00 43.49 3.10
3612 4241 4.645535 TGGTTCAGTGGAATTGAAGAGAG 58.354 43.478 0.00 0.00 43.49 3.20
3613 4242 4.006319 GGTTCAGTGGAATTGAAGAGAGG 58.994 47.826 0.00 0.00 43.49 3.69
3614 4243 3.988976 TCAGTGGAATTGAAGAGAGGG 57.011 47.619 0.00 0.00 25.66 4.30
3615 4244 3.520696 TCAGTGGAATTGAAGAGAGGGA 58.479 45.455 0.00 0.00 25.66 4.20
3617 4246 4.537688 TCAGTGGAATTGAAGAGAGGGAAT 59.462 41.667 0.00 0.00 25.66 3.01
3618 4247 4.639310 CAGTGGAATTGAAGAGAGGGAATG 59.361 45.833 0.00 0.00 0.00 2.67
3625 4254 3.260205 TGAAGAGAGGGAATGGGAGTTT 58.740 45.455 0.00 0.00 0.00 2.66
3626 4255 3.009473 TGAAGAGAGGGAATGGGAGTTTG 59.991 47.826 0.00 0.00 0.00 2.93
3627 4256 2.921221 AGAGAGGGAATGGGAGTTTGA 58.079 47.619 0.00 0.00 0.00 2.69
3629 4258 1.918957 AGAGGGAATGGGAGTTTGAGG 59.081 52.381 0.00 0.00 0.00 3.86
3630 4259 0.332972 AGGGAATGGGAGTTTGAGGC 59.667 55.000 0.00 0.00 0.00 4.70
3633 4262 2.091885 GGGAATGGGAGTTTGAGGCATA 60.092 50.000 0.00 0.00 0.00 3.14
3634 4263 3.217626 GGAATGGGAGTTTGAGGCATAG 58.782 50.000 0.00 0.00 0.00 2.23
3635 4264 3.117888 GGAATGGGAGTTTGAGGCATAGA 60.118 47.826 0.00 0.00 0.00 1.98
3636 4265 3.853355 ATGGGAGTTTGAGGCATAGAG 57.147 47.619 0.00 0.00 0.00 2.43
3637 4266 2.832838 TGGGAGTTTGAGGCATAGAGA 58.167 47.619 0.00 0.00 0.00 3.10
3638 4267 2.768527 TGGGAGTTTGAGGCATAGAGAG 59.231 50.000 0.00 0.00 0.00 3.20
3639 4268 2.769095 GGGAGTTTGAGGCATAGAGAGT 59.231 50.000 0.00 0.00 0.00 3.24
3641 4270 4.323868 GGGAGTTTGAGGCATAGAGAGTTT 60.324 45.833 0.00 0.00 0.00 2.66
3642 4271 5.249420 GGAGTTTGAGGCATAGAGAGTTTT 58.751 41.667 0.00 0.00 0.00 2.43
3643 4272 6.407202 GGAGTTTGAGGCATAGAGAGTTTTA 58.593 40.000 0.00 0.00 0.00 1.52
3644 4273 7.051000 GGAGTTTGAGGCATAGAGAGTTTTAT 58.949 38.462 0.00 0.00 0.00 1.40
3647 4276 7.554476 AGTTTGAGGCATAGAGAGTTTTATTCC 59.446 37.037 0.00 0.00 0.00 3.01
3648 4277 6.814954 TGAGGCATAGAGAGTTTTATTCCT 57.185 37.500 0.00 0.00 0.00 3.36
3649 4278 7.200434 TGAGGCATAGAGAGTTTTATTCCTT 57.800 36.000 0.00 0.00 0.00 3.36
3650 4279 7.633789 TGAGGCATAGAGAGTTTTATTCCTTT 58.366 34.615 0.00 0.00 0.00 3.11
3652 4281 7.406104 AGGCATAGAGAGTTTTATTCCTTTGT 58.594 34.615 0.00 0.00 0.00 2.83
3653 4282 7.890655 AGGCATAGAGAGTTTTATTCCTTTGTT 59.109 33.333 0.00 0.00 0.00 2.83
3654 4283 8.523658 GGCATAGAGAGTTTTATTCCTTTGTTT 58.476 33.333 0.00 0.00 0.00 2.83
3661 4290 7.768582 AGAGTTTTATTCCTTTGTTTGTTTGGG 59.231 33.333 0.00 0.00 0.00 4.12
3662 4291 7.398829 AGTTTTATTCCTTTGTTTGTTTGGGT 58.601 30.769 0.00 0.00 0.00 4.51
3663 4292 7.335673 AGTTTTATTCCTTTGTTTGTTTGGGTG 59.664 33.333 0.00 0.00 0.00 4.61
3664 4293 3.618690 TTCCTTTGTTTGTTTGGGTGG 57.381 42.857 0.00 0.00 0.00 4.61
3665 4294 2.821437 TCCTTTGTTTGTTTGGGTGGA 58.179 42.857 0.00 0.00 0.00 4.02
3666 4295 3.173965 TCCTTTGTTTGTTTGGGTGGAA 58.826 40.909 0.00 0.00 0.00 3.53
3667 4296 3.777522 TCCTTTGTTTGTTTGGGTGGAAT 59.222 39.130 0.00 0.00 0.00 3.01
3668 4297 3.876320 CCTTTGTTTGTTTGGGTGGAATG 59.124 43.478 0.00 0.00 0.00 2.67
3669 4298 4.383552 CCTTTGTTTGTTTGGGTGGAATGA 60.384 41.667 0.00 0.00 0.00 2.57
3670 4299 4.399004 TTGTTTGTTTGGGTGGAATGAG 57.601 40.909 0.00 0.00 0.00 2.90
3672 4301 4.026744 TGTTTGTTTGGGTGGAATGAGAA 58.973 39.130 0.00 0.00 0.00 2.87
3674 4303 5.130145 TGTTTGTTTGGGTGGAATGAGAATT 59.870 36.000 0.00 0.00 0.00 2.17
3675 4304 5.467035 TTGTTTGGGTGGAATGAGAATTC 57.533 39.130 0.00 0.00 0.00 2.17
3679 4308 6.723515 TGTTTGGGTGGAATGAGAATTCAATA 59.276 34.615 8.44 0.00 36.78 1.90
3680 4309 7.093814 TGTTTGGGTGGAATGAGAATTCAATAG 60.094 37.037 8.44 0.00 36.78 1.73
3681 4310 5.448654 TGGGTGGAATGAGAATTCAATAGG 58.551 41.667 8.44 0.00 36.78 2.57
3682 4311 4.829492 GGGTGGAATGAGAATTCAATAGGG 59.171 45.833 8.44 0.00 36.78 3.53
3683 4312 5.399038 GGGTGGAATGAGAATTCAATAGGGA 60.399 44.000 8.44 0.00 36.78 4.20
3684 4313 5.767168 GGTGGAATGAGAATTCAATAGGGAG 59.233 44.000 8.44 0.00 36.78 4.30
3686 4315 7.230027 GTGGAATGAGAATTCAATAGGGAGAT 58.770 38.462 8.44 0.00 36.78 2.75
3687 4316 7.174599 GTGGAATGAGAATTCAATAGGGAGATG 59.825 40.741 8.44 0.00 36.78 2.90
3688 4317 6.658391 GGAATGAGAATTCAATAGGGAGATGG 59.342 42.308 8.44 0.00 36.78 3.51
3691 4320 6.835174 TGAGAATTCAATAGGGAGATGGAAG 58.165 40.000 8.44 0.00 0.00 3.46
3692 4321 6.183361 TGAGAATTCAATAGGGAGATGGAAGG 60.183 42.308 8.44 0.00 0.00 3.46
3693 4322 5.074239 AGAATTCAATAGGGAGATGGAAGGG 59.926 44.000 8.44 0.00 0.00 3.95
3694 4323 2.706350 TCAATAGGGAGATGGAAGGGG 58.294 52.381 0.00 0.00 0.00 4.79
3695 4324 2.252676 TCAATAGGGAGATGGAAGGGGA 59.747 50.000 0.00 0.00 0.00 4.81
3696 4325 3.056080 CAATAGGGAGATGGAAGGGGAA 58.944 50.000 0.00 0.00 0.00 3.97
3697 4326 3.659686 CAATAGGGAGATGGAAGGGGAAT 59.340 47.826 0.00 0.00 0.00 3.01
3698 4327 2.310413 AGGGAGATGGAAGGGGAATT 57.690 50.000 0.00 0.00 0.00 2.17
3699 4328 2.139382 AGGGAGATGGAAGGGGAATTC 58.861 52.381 0.00 0.00 0.00 2.17
3700 4329 1.852965 GGGAGATGGAAGGGGAATTCA 59.147 52.381 7.93 0.00 0.00 2.57
3702 4331 2.565841 GAGATGGAAGGGGAATTCACG 58.434 52.381 7.93 0.00 0.00 4.35
3704 4333 2.017049 GATGGAAGGGGAATTCACGTG 58.983 52.381 9.94 9.94 0.00 4.49
3705 4334 0.768622 TGGAAGGGGAATTCACGTGT 59.231 50.000 16.51 0.00 0.00 4.49
3707 4336 2.027561 TGGAAGGGGAATTCACGTGTAG 60.028 50.000 16.51 0.00 0.00 2.74
3710 4339 3.611766 AGGGGAATTCACGTGTAGAAG 57.388 47.619 16.51 0.00 0.00 2.85
3711 4340 2.904434 AGGGGAATTCACGTGTAGAAGT 59.096 45.455 16.51 1.27 0.00 3.01
3713 4342 3.683340 GGGGAATTCACGTGTAGAAGTTC 59.317 47.826 16.51 8.41 0.00 3.01
3716 4345 4.151867 GGAATTCACGTGTAGAAGTTCCAC 59.848 45.833 16.51 0.00 35.33 4.02
3717 4346 3.804786 TTCACGTGTAGAAGTTCCACA 57.195 42.857 16.51 0.00 0.00 4.17
3718 4347 4.330944 TTCACGTGTAGAAGTTCCACAT 57.669 40.909 16.51 0.00 0.00 3.21
3721 4350 5.647589 TCACGTGTAGAAGTTCCACATATC 58.352 41.667 16.51 0.00 0.00 1.63
3723 4352 6.600427 TCACGTGTAGAAGTTCCACATATCTA 59.400 38.462 16.51 0.00 0.00 1.98
3728 4357 9.694137 GTGTAGAAGTTCCACATATCTATTACC 57.306 37.037 7.41 0.00 0.00 2.85
3729 4358 9.656323 TGTAGAAGTTCCACATATCTATTACCT 57.344 33.333 0.00 0.00 0.00 3.08
3733 4362 8.437274 AAGTTCCACATATCTATTACCTAGGG 57.563 38.462 14.81 0.00 0.00 3.53
3734 4363 6.960542 AGTTCCACATATCTATTACCTAGGGG 59.039 42.308 14.81 0.00 38.88 4.79
3746 4375 0.104409 CCTAGGGGAGGGCTGGTAAT 60.104 60.000 0.00 0.00 42.39 1.89
3749 4378 0.253630 AGGGGAGGGCTGGTAATTGA 60.254 55.000 0.00 0.00 0.00 2.57
3750 4379 0.183731 GGGGAGGGCTGGTAATTGAG 59.816 60.000 0.00 0.00 0.00 3.02
3751 4380 1.213296 GGGAGGGCTGGTAATTGAGA 58.787 55.000 0.00 0.00 0.00 3.27
3752 4381 1.777272 GGGAGGGCTGGTAATTGAGAT 59.223 52.381 0.00 0.00 0.00 2.75
3754 4383 2.487986 GGAGGGCTGGTAATTGAGATGG 60.488 54.545 0.00 0.00 0.00 3.51
3755 4384 1.496429 AGGGCTGGTAATTGAGATGGG 59.504 52.381 0.00 0.00 0.00 4.00
3756 4385 1.479389 GGGCTGGTAATTGAGATGGGG 60.479 57.143 0.00 0.00 0.00 4.96
3761 4390 4.210331 CTGGTAATTGAGATGGGGAAAGG 58.790 47.826 0.00 0.00 0.00 3.11
3762 4391 3.052944 TGGTAATTGAGATGGGGAAAGGG 60.053 47.826 0.00 0.00 0.00 3.95
3771 4400 4.384465 AGATGGGGAAAGGGAATTAGAGT 58.616 43.478 0.00 0.00 0.00 3.24
3772 4401 4.796265 AGATGGGGAAAGGGAATTAGAGTT 59.204 41.667 0.00 0.00 0.00 3.01
3775 4404 6.471942 TGGGGAAAGGGAATTAGAGTTAAA 57.528 37.500 0.00 0.00 0.00 1.52
3777 4406 6.046286 TGGGGAAAGGGAATTAGAGTTAAACT 59.954 38.462 0.00 0.00 0.00 2.66
3792 4421 2.789409 AAACTCTCATTCCCCTTCCG 57.211 50.000 0.00 0.00 0.00 4.30
3793 4422 0.912486 AACTCTCATTCCCCTTCCGG 59.088 55.000 0.00 0.00 0.00 5.14
3795 4424 0.912486 CTCTCATTCCCCTTCCGGTT 59.088 55.000 0.00 0.00 0.00 4.44
3796 4425 2.116238 CTCTCATTCCCCTTCCGGTTA 58.884 52.381 0.00 0.00 0.00 2.85
3797 4426 2.103263 CTCTCATTCCCCTTCCGGTTAG 59.897 54.545 0.00 0.00 0.00 2.34
3799 4428 2.238898 CTCATTCCCCTTCCGGTTAGTT 59.761 50.000 0.00 0.00 0.00 2.24
3800 4429 2.645797 TCATTCCCCTTCCGGTTAGTTT 59.354 45.455 0.00 0.00 0.00 2.66
3802 4431 0.037160 TCCCCTTCCGGTTAGTTTGC 59.963 55.000 0.00 0.00 0.00 3.68
3803 4432 0.963856 CCCCTTCCGGTTAGTTTGCC 60.964 60.000 0.00 0.00 0.00 4.52
3805 4434 1.611519 CCTTCCGGTTAGTTTGCCAA 58.388 50.000 0.00 0.00 0.00 4.52
3807 4436 2.287970 CCTTCCGGTTAGTTTGCCAAAC 60.288 50.000 12.37 12.37 41.69 2.93
3809 4438 1.950909 TCCGGTTAGTTTGCCAAACAG 59.049 47.619 21.45 7.67 43.79 3.16
3813 4552 3.810941 CGGTTAGTTTGCCAAACAGACTA 59.189 43.478 21.45 3.01 41.70 2.59
3878 4617 0.032678 CTGCAGGAACACGACAGAGT 59.967 55.000 5.57 0.00 0.00 3.24
3951 4698 5.687780 ACACAATAGCATCATCCTCATCAA 58.312 37.500 0.00 0.00 0.00 2.57
3962 4709 0.539051 CCTCATCAAGCCTCCTCGTT 59.461 55.000 0.00 0.00 0.00 3.85
3963 4710 1.065854 CCTCATCAAGCCTCCTCGTTT 60.066 52.381 0.00 0.00 0.00 3.60
3975 4722 1.068748 TCCTCGTTTGTGAGCGACTAC 60.069 52.381 0.00 0.00 34.71 2.73
3987 4734 0.454620 GCGACTACGACTGTGACAGG 60.455 60.000 17.92 2.26 42.66 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.755266 AGTAGAGCCATATTTTGTCGGT 57.245 40.909 0.00 0.00 0.00 4.69
2 3 7.359598 GCTGATAAGTAGAGCCATATTTTGTCG 60.360 40.741 0.00 0.00 0.00 4.35
3 4 7.659390 AGCTGATAAGTAGAGCCATATTTTGTC 59.341 37.037 0.00 0.00 32.86 3.18
4 5 7.512992 AGCTGATAAGTAGAGCCATATTTTGT 58.487 34.615 0.00 0.00 32.86 2.83
5 6 7.976135 AGCTGATAAGTAGAGCCATATTTTG 57.024 36.000 0.00 0.00 32.86 2.44
9 10 8.637986 GCTATAAGCTGATAAGTAGAGCCATAT 58.362 37.037 0.00 0.00 38.45 1.78
11 12 6.438741 TGCTATAAGCTGATAAGTAGAGCCAT 59.561 38.462 5.32 0.00 42.97 4.40
12 13 5.775195 TGCTATAAGCTGATAAGTAGAGCCA 59.225 40.000 5.32 0.00 42.97 4.75
13 14 6.274157 TGCTATAAGCTGATAAGTAGAGCC 57.726 41.667 5.32 0.00 42.97 4.70
14 15 9.296400 GTATTGCTATAAGCTGATAAGTAGAGC 57.704 37.037 0.03 1.41 42.97 4.09
15 16 9.796120 GGTATTGCTATAAGCTGATAAGTAGAG 57.204 37.037 0.03 0.00 42.97 2.43
16 17 9.535170 AGGTATTGCTATAAGCTGATAAGTAGA 57.465 33.333 0.03 0.00 42.97 2.59
19 20 9.090103 TGTAGGTATTGCTATAAGCTGATAAGT 57.910 33.333 0.03 0.00 42.97 2.24
20 21 9.929180 TTGTAGGTATTGCTATAAGCTGATAAG 57.071 33.333 0.03 0.00 42.97 1.73
23 24 9.442047 GAATTGTAGGTATTGCTATAAGCTGAT 57.558 33.333 0.03 0.00 42.97 2.90
24 25 8.651389 AGAATTGTAGGTATTGCTATAAGCTGA 58.349 33.333 0.03 0.00 42.97 4.26
25 26 8.839310 AGAATTGTAGGTATTGCTATAAGCTG 57.161 34.615 0.03 0.00 42.97 4.24
33 34 9.257651 GTTTACGATAGAATTGTAGGTATTGCT 57.742 33.333 0.00 0.00 41.38 3.91
34 35 9.037737 TGTTTACGATAGAATTGTAGGTATTGC 57.962 33.333 0.00 0.00 41.38 3.56
37 38 9.706691 CCATGTTTACGATAGAATTGTAGGTAT 57.293 33.333 0.00 0.00 41.38 2.73
38 39 8.916062 TCCATGTTTACGATAGAATTGTAGGTA 58.084 33.333 0.00 0.00 41.38 3.08
39 40 7.709613 GTCCATGTTTACGATAGAATTGTAGGT 59.290 37.037 0.00 0.00 41.38 3.08
40 41 7.096189 CGTCCATGTTTACGATAGAATTGTAGG 60.096 40.741 6.64 0.00 41.55 3.18
41 42 7.646526 TCGTCCATGTTTACGATAGAATTGTAG 59.353 37.037 10.13 0.00 42.74 2.74
42 43 7.482474 TCGTCCATGTTTACGATAGAATTGTA 58.518 34.615 10.13 0.00 42.74 2.41
43 44 6.334989 TCGTCCATGTTTACGATAGAATTGT 58.665 36.000 10.13 0.00 42.74 2.71
44 45 6.562270 GCTCGTCCATGTTTACGATAGAATTG 60.562 42.308 13.43 4.38 46.05 2.32
45 46 5.462398 GCTCGTCCATGTTTACGATAGAATT 59.538 40.000 13.43 0.00 46.05 2.17
46 47 4.982916 GCTCGTCCATGTTTACGATAGAAT 59.017 41.667 13.43 0.00 46.05 2.40
47 48 4.357142 GCTCGTCCATGTTTACGATAGAA 58.643 43.478 13.43 0.00 46.05 2.10
48 49 3.547413 CGCTCGTCCATGTTTACGATAGA 60.547 47.826 13.43 0.00 46.05 1.98
49 50 2.719556 CGCTCGTCCATGTTTACGATAG 59.280 50.000 13.43 8.44 46.05 2.08
50 51 2.097954 ACGCTCGTCCATGTTTACGATA 59.902 45.455 13.43 0.00 46.05 2.92
51 52 1.135199 ACGCTCGTCCATGTTTACGAT 60.135 47.619 13.43 0.26 46.05 3.73
52 53 0.241749 ACGCTCGTCCATGTTTACGA 59.758 50.000 12.69 12.69 45.17 3.43
53 54 0.365523 CACGCTCGTCCATGTTTACG 59.634 55.000 6.24 6.24 40.40 3.18
54 55 0.719465 CCACGCTCGTCCATGTTTAC 59.281 55.000 0.00 0.00 0.00 2.01
55 56 1.017177 GCCACGCTCGTCCATGTTTA 61.017 55.000 0.00 0.00 0.00 2.01
56 57 2.325082 GCCACGCTCGTCCATGTTT 61.325 57.895 0.00 0.00 0.00 2.83
57 58 2.742372 GCCACGCTCGTCCATGTT 60.742 61.111 0.00 0.00 0.00 2.71
58 59 2.803155 ATTGCCACGCTCGTCCATGT 62.803 55.000 0.00 0.00 0.00 3.21
59 60 2.108514 ATTGCCACGCTCGTCCATG 61.109 57.895 0.00 0.00 0.00 3.66
60 61 2.108514 CATTGCCACGCTCGTCCAT 61.109 57.895 0.00 0.00 0.00 3.41
61 62 2.741985 CATTGCCACGCTCGTCCA 60.742 61.111 0.00 0.00 0.00 4.02
62 63 2.742372 ACATTGCCACGCTCGTCC 60.742 61.111 0.00 0.00 0.00 4.79
63 64 2.476051 CACATTGCCACGCTCGTC 59.524 61.111 0.00 0.00 0.00 4.20
64 65 3.726517 GCACATTGCCACGCTCGT 61.727 61.111 0.00 0.00 37.42 4.18
65 66 4.799473 CGCACATTGCCACGCTCG 62.799 66.667 0.00 0.00 41.12 5.03
73 74 2.153945 CGTTGATGGCGCACATTGC 61.154 57.895 10.83 0.33 40.72 3.56
74 75 1.514657 CCGTTGATGGCGCACATTG 60.515 57.895 10.83 2.03 40.72 2.82
75 76 0.675208 TACCGTTGATGGCGCACATT 60.675 50.000 10.83 0.00 40.72 2.71
76 77 0.463654 ATACCGTTGATGGCGCACAT 60.464 50.000 10.83 10.68 44.18 3.21
77 78 0.175989 TATACCGTTGATGGCGCACA 59.824 50.000 10.83 5.20 0.00 4.57
78 79 0.859232 CTATACCGTTGATGGCGCAC 59.141 55.000 10.83 0.00 0.00 5.34
79 80 0.462375 ACTATACCGTTGATGGCGCA 59.538 50.000 10.83 0.00 0.00 6.09
80 81 2.056577 GTACTATACCGTTGATGGCGC 58.943 52.381 0.00 0.00 0.00 6.53
81 82 3.562505 GAGTACTATACCGTTGATGGCG 58.437 50.000 0.00 0.00 0.00 5.69
82 83 3.004106 ACGAGTACTATACCGTTGATGGC 59.996 47.826 0.00 0.00 33.83 4.40
83 84 4.825546 ACGAGTACTATACCGTTGATGG 57.174 45.455 0.00 0.00 33.83 3.51
92 93 4.142534 TGCCACTGTCAACGAGTACTATAC 60.143 45.833 0.00 0.00 0.00 1.47
94 95 2.823747 TGCCACTGTCAACGAGTACTAT 59.176 45.455 0.00 0.00 0.00 2.12
176 177 1.956170 CATGGGATGCGCTCCGTAC 60.956 63.158 9.73 1.64 46.01 3.67
277 278 0.388649 CAGAGTCCCGGTCAAGTTCG 60.389 60.000 0.00 0.00 0.00 3.95
304 305 0.246086 GACCTCACTCAGTCAGCTGG 59.754 60.000 15.13 0.00 42.78 4.85
345 350 0.389817 ATCATCGGTCGTGTGTGGTG 60.390 55.000 0.00 0.00 0.00 4.17
635 651 9.685828 CCCTTGACAAAGACGAAAAATAAAATA 57.314 29.630 0.00 0.00 35.19 1.40
636 652 8.201464 ACCCTTGACAAAGACGAAAAATAAAAT 58.799 29.630 0.00 0.00 35.19 1.82
637 653 7.548967 ACCCTTGACAAAGACGAAAAATAAAA 58.451 30.769 0.00 0.00 35.19 1.52
638 654 7.102847 ACCCTTGACAAAGACGAAAAATAAA 57.897 32.000 0.00 0.00 35.19 1.40
639 655 6.702716 ACCCTTGACAAAGACGAAAAATAA 57.297 33.333 0.00 0.00 35.19 1.40
694 715 5.640783 ACGGGCATACTTCTACAAGTTTAAC 59.359 40.000 0.00 0.00 40.16 2.01
730 751 3.977427 TCGGATCATACATTTCTCACCG 58.023 45.455 0.00 0.00 39.30 4.94
847 868 2.093973 GGCCGGAGATTATGACGATGAT 60.094 50.000 5.05 0.00 0.00 2.45
890 911 1.288127 CTTTGCTGCTTGCTCACCC 59.712 57.895 0.00 0.00 43.37 4.61
893 914 1.361271 GTGCTTTGCTGCTTGCTCA 59.639 52.632 0.00 0.00 43.37 4.26
915 936 4.039973 TCTCAACTCAACTCCCGTGTTAAT 59.960 41.667 0.00 0.00 0.00 1.40
916 937 3.385433 TCTCAACTCAACTCCCGTGTTAA 59.615 43.478 0.00 0.00 0.00 2.01
917 938 2.960384 TCTCAACTCAACTCCCGTGTTA 59.040 45.455 0.00 0.00 0.00 2.41
918 939 1.760613 TCTCAACTCAACTCCCGTGTT 59.239 47.619 0.00 0.00 0.00 3.32
1646 1672 2.158559 CCATTTGACCATCAACCGTCA 58.841 47.619 0.00 0.00 35.89 4.35
2044 2073 0.320334 TCTTTGAGCGCGTTCATGGA 60.320 50.000 26.28 21.77 0.00 3.41
2121 2150 2.141448 TGCCACGGTGACCCAGTAA 61.141 57.895 10.28 0.00 0.00 2.24
2184 2213 7.667043 TCGAACAAAACTTATATGCTGACTT 57.333 32.000 0.00 0.00 0.00 3.01
2203 2232 5.625251 TGTAGAGATACGTTGACTTCGAAC 58.375 41.667 0.00 0.00 0.00 3.95
2204 2233 5.868043 TGTAGAGATACGTTGACTTCGAA 57.132 39.130 0.00 0.00 0.00 3.71
2207 2236 7.112287 CGATGAATGTAGAGATACGTTGACTTC 59.888 40.741 0.00 0.00 30.06 3.01
2208 2237 6.913132 CGATGAATGTAGAGATACGTTGACTT 59.087 38.462 0.00 0.00 30.06 3.01
2210 2239 6.427974 TCGATGAATGTAGAGATACGTTGAC 58.572 40.000 0.00 0.00 30.06 3.18
2249 2279 9.585099 TTGATTTGGCTTTGTGAATATTGATAC 57.415 29.630 0.00 0.00 0.00 2.24
2346 2399 4.108699 TGTCCAGTCAAACTTTGCAAAG 57.891 40.909 32.53 32.53 41.73 2.77
2347 2400 4.527509 TTGTCCAGTCAAACTTTGCAAA 57.472 36.364 12.14 12.14 0.00 3.68
2348 2401 4.527509 TTTGTCCAGTCAAACTTTGCAA 57.472 36.364 0.00 0.00 33.23 4.08
2349 2402 4.527509 TTTTGTCCAGTCAAACTTTGCA 57.472 36.364 0.00 0.00 37.10 4.08
2350 2403 4.507756 GGATTTTGTCCAGTCAAACTTTGC 59.492 41.667 0.00 0.00 46.96 3.68
2392 2445 2.683465 TACGTACTCCCTCCGGCCT 61.683 63.158 0.00 0.00 0.00 5.19
2396 2449 2.557920 ATAGGTACGTACTCCCTCCG 57.442 55.000 24.07 0.00 0.00 4.63
2439 2951 4.739716 GTGTAACGAAACTAACCAAGTCGA 59.260 41.667 0.00 0.00 37.50 4.20
2455 2967 6.959311 GCTCAAATTAATGTGTAGGTGTAACG 59.041 38.462 5.52 0.00 38.12 3.18
2608 3124 1.914634 AGAAGAATGTGAGCGCGTAG 58.085 50.000 8.43 0.00 0.00 3.51
2812 3328 3.244353 ACATGTTGGTGACAGAGAGAAGG 60.244 47.826 0.00 0.00 42.62 3.46
2815 3331 3.552890 CGAACATGTTGGTGACAGAGAGA 60.553 47.826 17.58 0.00 42.62 3.10
2863 3379 2.845550 CGATCGGCCCATCGTCTCA 61.846 63.158 22.88 0.00 40.72 3.27
2947 3463 2.436115 GGAGGGGCCTTTTCGACG 60.436 66.667 0.84 0.00 0.00 5.12
3011 3527 1.726892 GCATGTGTGCGTGTTCTCATG 60.727 52.381 0.00 0.00 42.28 3.07
3012 3528 0.518636 GCATGTGTGCGTGTTCTCAT 59.481 50.000 0.00 0.00 42.28 2.90
3024 3544 3.525844 CTTGCGTGCGTGCATGTGT 62.526 57.895 14.92 0.00 45.78 3.72
3035 3555 6.395089 AGATGATATTATTACGCTTGCGTG 57.605 37.500 27.59 0.00 0.00 5.34
3036 3556 8.703604 ATAAGATGATATTATTACGCTTGCGT 57.296 30.769 23.71 23.71 0.00 5.24
3037 3557 9.025020 AGATAAGATGATATTATTACGCTTGCG 57.975 33.333 13.70 13.70 0.00 4.85
3114 3634 9.539825 CTTTCCAATTCGCTAGCTGATATATAT 57.460 33.333 13.93 0.00 0.00 0.86
3115 3635 7.981789 CCTTTCCAATTCGCTAGCTGATATATA 59.018 37.037 13.93 0.00 0.00 0.86
3116 3636 6.820656 CCTTTCCAATTCGCTAGCTGATATAT 59.179 38.462 13.93 0.39 0.00 0.86
3117 3637 6.166279 CCTTTCCAATTCGCTAGCTGATATA 58.834 40.000 13.93 0.00 0.00 0.86
3118 3638 4.999950 CCTTTCCAATTCGCTAGCTGATAT 59.000 41.667 13.93 5.96 0.00 1.63
3192 3716 0.954452 CTCTCAAACCAAGTGCCACC 59.046 55.000 0.00 0.00 0.00 4.61
3193 3717 1.680338 ACTCTCAAACCAAGTGCCAC 58.320 50.000 0.00 0.00 0.00 5.01
3194 3718 2.426738 CAAACTCTCAAACCAAGTGCCA 59.573 45.455 0.00 0.00 0.00 4.92
3373 3977 6.509199 CGCAAACAAAAACAGCACATATTTGA 60.509 34.615 3.81 0.00 35.52 2.69
3374 3978 5.616383 CGCAAACAAAAACAGCACATATTTG 59.384 36.000 0.00 0.00 37.10 2.32
3375 3979 5.277250 CCGCAAACAAAAACAGCACATATTT 60.277 36.000 0.00 0.00 0.00 1.40
3376 3980 4.210955 CCGCAAACAAAAACAGCACATATT 59.789 37.500 0.00 0.00 0.00 1.28
3377 3981 3.740321 CCGCAAACAAAAACAGCACATAT 59.260 39.130 0.00 0.00 0.00 1.78
3378 3982 3.119291 CCGCAAACAAAAACAGCACATA 58.881 40.909 0.00 0.00 0.00 2.29
3379 3983 1.932511 CCGCAAACAAAAACAGCACAT 59.067 42.857 0.00 0.00 0.00 3.21
3380 3984 1.354040 CCGCAAACAAAAACAGCACA 58.646 45.000 0.00 0.00 0.00 4.57
3383 3987 1.864565 ATCCCGCAAACAAAAACAGC 58.135 45.000 0.00 0.00 0.00 4.40
3384 3988 4.226761 GTCTATCCCGCAAACAAAAACAG 58.773 43.478 0.00 0.00 0.00 3.16
3386 4012 4.231718 TGTCTATCCCGCAAACAAAAAC 57.768 40.909 0.00 0.00 0.00 2.43
3392 4018 8.656849 CATACTATTTATGTCTATCCCGCAAAC 58.343 37.037 0.00 0.00 0.00 2.93
3393 4019 7.333423 GCATACTATTTATGTCTATCCCGCAAA 59.667 37.037 0.00 0.00 0.00 3.68
3397 4023 8.417106 AGATGCATACTATTTATGTCTATCCCG 58.583 37.037 0.00 0.00 0.00 5.14
3398 4024 9.757227 GAGATGCATACTATTTATGTCTATCCC 57.243 37.037 0.00 0.00 0.00 3.85
3413 4039 7.050970 TCGTTACCTTATTGAGATGCATACT 57.949 36.000 0.00 0.00 0.00 2.12
3431 4058 5.844301 TGAGAAAAATACCCGTTCGTTAC 57.156 39.130 0.00 0.00 0.00 2.50
3475 4104 8.635877 ATCTATGTAGTTTGTTCTTTCTAGCG 57.364 34.615 0.00 0.00 0.00 4.26
3500 4129 7.353525 TCCTTCCAAAAAGCAGGATTATATGA 58.646 34.615 0.00 0.00 33.10 2.15
3505 4134 5.144100 TGTTCCTTCCAAAAAGCAGGATTA 58.856 37.500 0.00 0.00 35.30 1.75
3523 4152 6.526674 CGAATGTTTACCAGCTTAATTGTTCC 59.473 38.462 0.00 0.00 0.00 3.62
3527 4156 7.867445 AAACGAATGTTTACCAGCTTAATTG 57.133 32.000 0.00 0.00 46.22 2.32
3549 4178 7.447594 AGAGTCTAAACCCACTCGATTTAAAA 58.552 34.615 0.00 0.00 43.37 1.52
3574 4203 0.464036 ACCAAACACGCTGTCAGAGA 59.536 50.000 10.86 0.00 0.00 3.10
3581 4210 0.029300 CCACTGAACCAAACACGCTG 59.971 55.000 0.00 0.00 0.00 5.18
3582 4211 0.107410 TCCACTGAACCAAACACGCT 60.107 50.000 0.00 0.00 0.00 5.07
3585 4214 4.647424 TCAATTCCACTGAACCAAACAC 57.353 40.909 0.00 0.00 32.13 3.32
3586 4215 4.952957 TCTTCAATTCCACTGAACCAAACA 59.047 37.500 0.00 0.00 32.13 2.83
3587 4216 5.299279 TCTCTTCAATTCCACTGAACCAAAC 59.701 40.000 0.00 0.00 32.13 2.93
3591 4220 4.006319 CCTCTCTTCAATTCCACTGAACC 58.994 47.826 0.00 0.00 32.13 3.62
3592 4221 4.006319 CCCTCTCTTCAATTCCACTGAAC 58.994 47.826 0.00 0.00 32.13 3.18
3595 4224 3.988976 TCCCTCTCTTCAATTCCACTG 57.011 47.619 0.00 0.00 0.00 3.66
3596 4225 4.324874 CCATTCCCTCTCTTCAATTCCACT 60.325 45.833 0.00 0.00 0.00 4.00
3598 4227 3.053395 CCCATTCCCTCTCTTCAATTCCA 60.053 47.826 0.00 0.00 0.00 3.53
3599 4228 3.203040 TCCCATTCCCTCTCTTCAATTCC 59.797 47.826 0.00 0.00 0.00 3.01
3600 4229 4.080072 ACTCCCATTCCCTCTCTTCAATTC 60.080 45.833 0.00 0.00 0.00 2.17
3605 4234 3.264450 TCAAACTCCCATTCCCTCTCTTC 59.736 47.826 0.00 0.00 0.00 2.87
3606 4235 3.260205 TCAAACTCCCATTCCCTCTCTT 58.740 45.455 0.00 0.00 0.00 2.85
3608 4237 2.092699 CCTCAAACTCCCATTCCCTCTC 60.093 54.545 0.00 0.00 0.00 3.20
3609 4238 1.918957 CCTCAAACTCCCATTCCCTCT 59.081 52.381 0.00 0.00 0.00 3.69
3610 4239 1.683319 GCCTCAAACTCCCATTCCCTC 60.683 57.143 0.00 0.00 0.00 4.30
3611 4240 0.332972 GCCTCAAACTCCCATTCCCT 59.667 55.000 0.00 0.00 0.00 4.20
3612 4241 0.039618 TGCCTCAAACTCCCATTCCC 59.960 55.000 0.00 0.00 0.00 3.97
3613 4242 2.149973 ATGCCTCAAACTCCCATTCC 57.850 50.000 0.00 0.00 0.00 3.01
3614 4243 4.133078 CTCTATGCCTCAAACTCCCATTC 58.867 47.826 0.00 0.00 0.00 2.67
3615 4244 3.782523 TCTCTATGCCTCAAACTCCCATT 59.217 43.478 0.00 0.00 0.00 3.16
3617 4246 2.768527 CTCTCTATGCCTCAAACTCCCA 59.231 50.000 0.00 0.00 0.00 4.37
3618 4247 2.769095 ACTCTCTATGCCTCAAACTCCC 59.231 50.000 0.00 0.00 0.00 4.30
3625 4254 6.814954 AGGAATAAAACTCTCTATGCCTCA 57.185 37.500 0.00 0.00 28.48 3.86
3626 4255 7.554476 ACAAAGGAATAAAACTCTCTATGCCTC 59.446 37.037 0.00 0.00 33.01 4.70
3627 4256 7.406104 ACAAAGGAATAAAACTCTCTATGCCT 58.594 34.615 0.00 0.00 35.34 4.75
3629 4258 9.346725 CAAACAAAGGAATAAAACTCTCTATGC 57.653 33.333 0.00 0.00 0.00 3.14
3633 4262 9.586435 CAAACAAACAAAGGAATAAAACTCTCT 57.414 29.630 0.00 0.00 0.00 3.10
3634 4263 8.817100 CCAAACAAACAAAGGAATAAAACTCTC 58.183 33.333 0.00 0.00 0.00 3.20
3635 4264 7.768582 CCCAAACAAACAAAGGAATAAAACTCT 59.231 33.333 0.00 0.00 0.00 3.24
3636 4265 7.551262 ACCCAAACAAACAAAGGAATAAAACTC 59.449 33.333 0.00 0.00 0.00 3.01
3637 4266 7.335673 CACCCAAACAAACAAAGGAATAAAACT 59.664 33.333 0.00 0.00 0.00 2.66
3638 4267 7.414651 CCACCCAAACAAACAAAGGAATAAAAC 60.415 37.037 0.00 0.00 0.00 2.43
3639 4268 6.599638 CCACCCAAACAAACAAAGGAATAAAA 59.400 34.615 0.00 0.00 0.00 1.52
3641 4270 5.425539 TCCACCCAAACAAACAAAGGAATAA 59.574 36.000 0.00 0.00 0.00 1.40
3642 4271 4.962995 TCCACCCAAACAAACAAAGGAATA 59.037 37.500 0.00 0.00 0.00 1.75
3643 4272 3.777522 TCCACCCAAACAAACAAAGGAAT 59.222 39.130 0.00 0.00 0.00 3.01
3644 4273 3.173965 TCCACCCAAACAAACAAAGGAA 58.826 40.909 0.00 0.00 0.00 3.36
3647 4276 4.764172 TCATTCCACCCAAACAAACAAAG 58.236 39.130 0.00 0.00 0.00 2.77
3648 4277 4.467795 TCTCATTCCACCCAAACAAACAAA 59.532 37.500 0.00 0.00 0.00 2.83
3649 4278 4.026744 TCTCATTCCACCCAAACAAACAA 58.973 39.130 0.00 0.00 0.00 2.83
3650 4279 3.636679 TCTCATTCCACCCAAACAAACA 58.363 40.909 0.00 0.00 0.00 2.83
3652 4281 5.365025 TGAATTCTCATTCCACCCAAACAAA 59.635 36.000 7.05 0.00 38.50 2.83
3653 4282 4.898265 TGAATTCTCATTCCACCCAAACAA 59.102 37.500 7.05 0.00 38.50 2.83
3654 4283 4.478203 TGAATTCTCATTCCACCCAAACA 58.522 39.130 7.05 0.00 38.50 2.83
3656 4285 6.380846 CCTATTGAATTCTCATTCCACCCAAA 59.619 38.462 7.05 0.00 38.50 3.28
3657 4286 5.893255 CCTATTGAATTCTCATTCCACCCAA 59.107 40.000 7.05 0.00 38.50 4.12
3658 4287 5.448654 CCTATTGAATTCTCATTCCACCCA 58.551 41.667 7.05 0.00 38.50 4.51
3661 4290 6.595682 TCTCCCTATTGAATTCTCATTCCAC 58.404 40.000 7.05 0.00 38.50 4.02
3662 4291 6.829985 TCTCCCTATTGAATTCTCATTCCA 57.170 37.500 7.05 0.00 38.50 3.53
3663 4292 6.658391 CCATCTCCCTATTGAATTCTCATTCC 59.342 42.308 7.05 0.00 38.50 3.01
3664 4293 7.456725 TCCATCTCCCTATTGAATTCTCATTC 58.543 38.462 7.05 0.00 39.58 2.67
3665 4294 7.398289 TCCATCTCCCTATTGAATTCTCATT 57.602 36.000 7.05 0.00 0.00 2.57
3666 4295 7.398289 TTCCATCTCCCTATTGAATTCTCAT 57.602 36.000 7.05 1.71 0.00 2.90
3667 4296 6.183361 CCTTCCATCTCCCTATTGAATTCTCA 60.183 42.308 7.05 0.00 0.00 3.27
3668 4297 6.237154 CCTTCCATCTCCCTATTGAATTCTC 58.763 44.000 7.05 0.00 0.00 2.87
3669 4298 5.074239 CCCTTCCATCTCCCTATTGAATTCT 59.926 44.000 7.05 0.00 0.00 2.40
3670 4299 5.320277 CCCTTCCATCTCCCTATTGAATTC 58.680 45.833 0.00 0.00 0.00 2.17
3672 4301 3.659686 CCCCTTCCATCTCCCTATTGAAT 59.340 47.826 0.00 0.00 0.00 2.57
3674 4303 2.252676 TCCCCTTCCATCTCCCTATTGA 59.747 50.000 0.00 0.00 0.00 2.57
3675 4304 2.706350 TCCCCTTCCATCTCCCTATTG 58.294 52.381 0.00 0.00 0.00 1.90
3679 4308 2.139382 GAATTCCCCTTCCATCTCCCT 58.861 52.381 0.00 0.00 0.00 4.20
3680 4309 1.852965 TGAATTCCCCTTCCATCTCCC 59.147 52.381 2.27 0.00 0.00 4.30
3681 4310 2.746472 CGTGAATTCCCCTTCCATCTCC 60.746 54.545 2.27 0.00 0.00 3.71
3682 4311 2.092914 ACGTGAATTCCCCTTCCATCTC 60.093 50.000 2.27 0.00 0.00 2.75
3683 4312 1.916181 ACGTGAATTCCCCTTCCATCT 59.084 47.619 2.27 0.00 0.00 2.90
3684 4313 2.017049 CACGTGAATTCCCCTTCCATC 58.983 52.381 10.90 0.00 0.00 3.51
3686 4315 0.768622 ACACGTGAATTCCCCTTCCA 59.231 50.000 25.01 0.00 0.00 3.53
3687 4316 2.235402 TCTACACGTGAATTCCCCTTCC 59.765 50.000 25.01 0.00 0.00 3.46
3688 4317 3.604875 TCTACACGTGAATTCCCCTTC 57.395 47.619 25.01 0.00 0.00 3.46
3691 4320 3.329929 ACTTCTACACGTGAATTCCCC 57.670 47.619 25.01 0.00 0.00 4.81
3692 4321 3.683340 GGAACTTCTACACGTGAATTCCC 59.317 47.826 25.01 8.65 32.03 3.97
3693 4322 4.151867 GTGGAACTTCTACACGTGAATTCC 59.848 45.833 25.01 21.70 34.93 3.01
3694 4323 4.748102 TGTGGAACTTCTACACGTGAATTC 59.252 41.667 25.01 14.43 32.78 2.17
3695 4324 4.699637 TGTGGAACTTCTACACGTGAATT 58.300 39.130 25.01 1.74 32.78 2.17
3696 4325 4.330944 TGTGGAACTTCTACACGTGAAT 57.669 40.909 25.01 2.62 32.78 2.57
3697 4326 3.804786 TGTGGAACTTCTACACGTGAA 57.195 42.857 25.01 5.15 32.78 3.18
3698 4327 5.417894 AGATATGTGGAACTTCTACACGTGA 59.582 40.000 25.01 4.97 40.65 4.35
3699 4328 5.651530 AGATATGTGGAACTTCTACACGTG 58.348 41.667 15.48 15.48 40.65 4.49
3700 4329 5.916661 AGATATGTGGAACTTCTACACGT 57.083 39.130 9.92 4.56 40.65 4.49
3702 4331 9.694137 GGTAATAGATATGTGGAACTTCTACAC 57.306 37.037 9.92 1.36 40.65 2.90
3707 4336 8.532819 CCCTAGGTAATAGATATGTGGAACTTC 58.467 40.741 8.29 0.00 33.04 3.01
3710 4339 6.958192 TCCCCTAGGTAATAGATATGTGGAAC 59.042 42.308 8.29 0.00 32.76 3.62
3711 4340 7.123560 TCCCCTAGGTAATAGATATGTGGAA 57.876 40.000 8.29 0.00 32.76 3.53
3713 4342 5.900123 CCTCCCCTAGGTAATAGATATGTGG 59.100 48.000 8.29 0.00 40.94 4.17
3716 4345 4.902448 GCCCTCCCCTAGGTAATAGATATG 59.098 50.000 8.29 0.00 44.90 1.78
3717 4346 4.807965 AGCCCTCCCCTAGGTAATAGATAT 59.192 45.833 8.29 0.00 44.90 1.63
3718 4347 4.016479 CAGCCCTCCCCTAGGTAATAGATA 60.016 50.000 8.29 0.00 44.90 1.98
3721 4350 2.541466 CAGCCCTCCCCTAGGTAATAG 58.459 57.143 8.29 0.00 44.90 1.73
3723 4352 0.104409 CCAGCCCTCCCCTAGGTAAT 60.104 60.000 8.29 0.00 44.90 1.89
3728 4357 1.421646 CAATTACCAGCCCTCCCCTAG 59.578 57.143 0.00 0.00 0.00 3.02
3729 4358 1.010294 TCAATTACCAGCCCTCCCCTA 59.990 52.381 0.00 0.00 0.00 3.53
3730 4359 0.253630 TCAATTACCAGCCCTCCCCT 60.254 55.000 0.00 0.00 0.00 4.79
3733 4362 2.487986 CCATCTCAATTACCAGCCCTCC 60.488 54.545 0.00 0.00 0.00 4.30
3734 4363 2.487986 CCCATCTCAATTACCAGCCCTC 60.488 54.545 0.00 0.00 0.00 4.30
3737 4366 1.494721 TCCCCATCTCAATTACCAGCC 59.505 52.381 0.00 0.00 0.00 4.85
3741 4370 3.204382 TCCCTTTCCCCATCTCAATTACC 59.796 47.826 0.00 0.00 0.00 2.85
3743 4372 5.749422 ATTCCCTTTCCCCATCTCAATTA 57.251 39.130 0.00 0.00 0.00 1.40
3746 4375 4.793520 TCTAATTCCCTTTCCCCATCTCAA 59.206 41.667 0.00 0.00 0.00 3.02
3749 4378 4.384465 ACTCTAATTCCCTTTCCCCATCT 58.616 43.478 0.00 0.00 0.00 2.90
3750 4379 4.797912 ACTCTAATTCCCTTTCCCCATC 57.202 45.455 0.00 0.00 0.00 3.51
3751 4380 6.668133 TTAACTCTAATTCCCTTTCCCCAT 57.332 37.500 0.00 0.00 0.00 4.00
3752 4381 6.046286 AGTTTAACTCTAATTCCCTTTCCCCA 59.954 38.462 0.00 0.00 0.00 4.96
3754 4383 7.627298 GAGTTTAACTCTAATTCCCTTTCCC 57.373 40.000 16.96 0.00 41.88 3.97
3771 4400 4.216411 CGGAAGGGGAATGAGAGTTTAA 57.784 45.455 0.00 0.00 0.00 1.52
3772 4401 3.906720 CGGAAGGGGAATGAGAGTTTA 57.093 47.619 0.00 0.00 0.00 2.01
3785 4414 5.408650 GTTTGGCAAACTAACCGGAAGGG 62.409 52.174 30.54 0.00 46.61 3.95
3787 4416 2.359531 TGTTTGGCAAACTAACCGGAAG 59.640 45.455 35.03 7.88 41.90 3.46
3788 4417 2.359531 CTGTTTGGCAAACTAACCGGAA 59.640 45.455 35.03 17.15 41.90 4.30
3789 4418 1.950909 CTGTTTGGCAAACTAACCGGA 59.049 47.619 35.03 17.78 41.90 5.14
3790 4419 1.950909 TCTGTTTGGCAAACTAACCGG 59.049 47.619 35.03 18.99 41.90 5.28
3792 4421 5.472137 TCATAGTCTGTTTGGCAAACTAACC 59.528 40.000 35.03 22.64 41.90 2.85
3793 4422 6.554334 TCATAGTCTGTTTGGCAAACTAAC 57.446 37.500 35.03 30.37 41.90 2.34
3795 4424 5.705441 CCTTCATAGTCTGTTTGGCAAACTA 59.295 40.000 35.03 23.36 41.90 2.24
3796 4425 4.520492 CCTTCATAGTCTGTTTGGCAAACT 59.480 41.667 35.03 22.13 41.90 2.66
3797 4426 4.798574 CCTTCATAGTCTGTTTGGCAAAC 58.201 43.478 30.99 30.99 41.73 2.93
3799 4428 2.819608 GCCTTCATAGTCTGTTTGGCAA 59.180 45.455 0.00 0.00 36.41 4.52
3800 4429 2.040278 AGCCTTCATAGTCTGTTTGGCA 59.960 45.455 0.00 0.00 37.72 4.92
3802 4431 4.872691 CAGTAGCCTTCATAGTCTGTTTGG 59.127 45.833 0.00 0.00 0.00 3.28
3803 4432 4.872691 CCAGTAGCCTTCATAGTCTGTTTG 59.127 45.833 0.00 0.00 0.00 2.93
3805 4434 4.097418 ACCAGTAGCCTTCATAGTCTGTT 58.903 43.478 0.00 0.00 0.00 3.16
3807 4436 3.243234 CGACCAGTAGCCTTCATAGTCTG 60.243 52.174 0.00 0.00 0.00 3.51
3809 4438 2.950309 TCGACCAGTAGCCTTCATAGTC 59.050 50.000 0.00 0.00 0.00 2.59
3813 4552 2.180276 AGTTCGACCAGTAGCCTTCAT 58.820 47.619 0.00 0.00 0.00 2.57
3867 4606 1.068194 GCTTCTGCTACTCTGTCGTGT 60.068 52.381 0.00 0.00 36.03 4.49
3878 4617 0.461548 CCACCTCGATGCTTCTGCTA 59.538 55.000 0.00 0.00 40.48 3.49
3911 4650 2.171659 TGTGTTACCTTGTCTTGCAGGA 59.828 45.455 0.00 0.00 0.00 3.86
3951 4698 1.004440 GCTCACAAACGAGGAGGCT 60.004 57.895 0.00 0.00 33.36 4.58
3962 4709 0.949397 ACAGTCGTAGTCGCTCACAA 59.051 50.000 0.00 0.00 36.96 3.33
3963 4710 0.237498 CACAGTCGTAGTCGCTCACA 59.763 55.000 0.00 0.00 36.96 3.58
3975 4722 2.126307 CCTCGCCTGTCACAGTCG 60.126 66.667 0.67 0.67 34.03 4.18
3987 4734 3.291611 TCCTTCCGTAACCCTCGC 58.708 61.111 0.00 0.00 0.00 5.03


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.