Multiple sequence alignment - TraesCS4A01G300900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G300900 chr4A 100.000 3816 0 0 1 3816 598297479 598293664 0.000000e+00 7047
1 TraesCS4A01G300900 chr1B 91.047 3496 222 37 321 3778 656181686 656185128 0.000000e+00 4638
2 TraesCS4A01G300900 chr1B 93.939 132 8 0 110 241 656179847 656179978 2.320000e-47 200


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G300900 chr4A 598293664 598297479 3815 True 7047 7047 100.000 1 3816 1 chr4A.!!$R1 3815
1 TraesCS4A01G300900 chr1B 656179847 656185128 5281 False 2419 4638 92.493 110 3778 2 chr1B.!!$F1 3668

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
61 62 0.106318 GTCCTACCCGGCTTAGGAGA 60.106 60.0 23.88 7.29 44.79 3.71 F
237 238 0.179040 GGTCCAGACGAACCACCAAA 60.179 55.0 0.00 0.00 35.53 3.28 F
2089 3762 0.388659 TGGTCAAGCCACAATTGTGC 59.611 50.0 29.42 23.70 43.61 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1634 3300 0.035820 GAAATCCGTGGTGCACCCTA 60.036 55.0 32.62 13.10 34.29 3.53 R
2185 3858 1.607801 CGGTGATGCTGACCTCCTCA 61.608 60.0 0.00 0.00 0.00 3.86 R
3624 5331 0.321210 TTGGGTATCACGTGGCACAG 60.321 55.0 19.09 12.74 41.80 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.630894 GCAGATAGAGATATGGAGTCGG 57.369 50.000 0.00 0.00 0.00 4.79
22 23 4.265893 GCAGATAGAGATATGGAGTCGGA 58.734 47.826 0.00 0.00 0.00 4.55
23 24 4.095782 GCAGATAGAGATATGGAGTCGGAC 59.904 50.000 0.00 0.00 0.00 4.79
24 25 5.496556 CAGATAGAGATATGGAGTCGGACT 58.503 45.833 11.09 11.09 0.00 3.85
25 26 5.943416 CAGATAGAGATATGGAGTCGGACTT 59.057 44.000 12.67 0.00 0.00 3.01
26 27 6.432783 CAGATAGAGATATGGAGTCGGACTTT 59.567 42.308 12.67 3.51 0.00 2.66
27 28 6.657541 AGATAGAGATATGGAGTCGGACTTTC 59.342 42.308 12.67 8.58 0.00 2.62
28 29 3.566322 AGAGATATGGAGTCGGACTTTCG 59.434 47.826 12.67 0.00 0.00 3.46
29 30 2.034812 AGATATGGAGTCGGACTTTCGC 59.965 50.000 12.67 0.00 0.00 4.70
30 31 1.179152 TATGGAGTCGGACTTTCGCA 58.821 50.000 12.67 2.25 0.00 5.10
31 32 0.537188 ATGGAGTCGGACTTTCGCAT 59.463 50.000 12.67 4.31 0.00 4.73
32 33 1.179152 TGGAGTCGGACTTTCGCATA 58.821 50.000 12.67 0.00 0.00 3.14
33 34 1.134367 TGGAGTCGGACTTTCGCATAG 59.866 52.381 12.67 0.00 0.00 2.23
34 35 1.404391 GGAGTCGGACTTTCGCATAGA 59.596 52.381 12.67 0.00 0.00 1.98
35 36 2.159282 GGAGTCGGACTTTCGCATAGAA 60.159 50.000 12.67 0.00 37.01 2.10
36 37 3.508762 GAGTCGGACTTTCGCATAGAAA 58.491 45.455 12.67 0.00 45.76 2.52
37 38 3.251571 AGTCGGACTTTCGCATAGAAAC 58.748 45.455 4.45 0.00 43.35 2.78
38 39 2.347755 GTCGGACTTTCGCATAGAAACC 59.652 50.000 0.00 0.00 43.35 3.27
39 40 1.323534 CGGACTTTCGCATAGAAACCG 59.676 52.381 7.79 7.79 45.49 4.44
40 41 2.613691 GGACTTTCGCATAGAAACCGA 58.386 47.619 0.00 0.00 43.35 4.69
41 42 3.195661 GGACTTTCGCATAGAAACCGAT 58.804 45.455 0.00 0.00 43.35 4.18
42 43 3.001330 GGACTTTCGCATAGAAACCGATG 59.999 47.826 0.00 0.00 43.35 3.84
43 44 3.596214 ACTTTCGCATAGAAACCGATGT 58.404 40.909 0.00 0.00 43.35 3.06
44 45 3.617263 ACTTTCGCATAGAAACCGATGTC 59.383 43.478 0.00 0.00 43.35 3.06
45 46 2.218953 TCGCATAGAAACCGATGTCC 57.781 50.000 0.00 0.00 0.00 4.02
46 47 1.754803 TCGCATAGAAACCGATGTCCT 59.245 47.619 0.00 0.00 0.00 3.85
47 48 2.953648 TCGCATAGAAACCGATGTCCTA 59.046 45.455 0.00 0.00 0.00 2.94
48 49 3.050619 CGCATAGAAACCGATGTCCTAC 58.949 50.000 0.00 0.00 0.00 3.18
49 50 3.391049 GCATAGAAACCGATGTCCTACC 58.609 50.000 0.00 0.00 0.00 3.18
50 51 3.802675 GCATAGAAACCGATGTCCTACCC 60.803 52.174 0.00 0.00 0.00 3.69
51 52 0.822164 AGAAACCGATGTCCTACCCG 59.178 55.000 0.00 0.00 0.00 5.28
52 53 0.179092 GAAACCGATGTCCTACCCGG 60.179 60.000 0.00 0.00 46.65 5.73
53 54 2.248086 AAACCGATGTCCTACCCGGC 62.248 60.000 0.00 0.00 45.29 6.13
54 55 2.838225 CCGATGTCCTACCCGGCT 60.838 66.667 0.00 0.00 35.29 5.52
55 56 2.432300 CCGATGTCCTACCCGGCTT 61.432 63.158 0.00 0.00 35.29 4.35
56 57 1.111116 CCGATGTCCTACCCGGCTTA 61.111 60.000 0.00 0.00 35.29 3.09
57 58 0.314302 CGATGTCCTACCCGGCTTAG 59.686 60.000 0.00 0.00 0.00 2.18
58 59 0.680061 GATGTCCTACCCGGCTTAGG 59.320 60.000 17.61 17.61 37.99 2.69
59 60 0.263765 ATGTCCTACCCGGCTTAGGA 59.736 55.000 20.90 20.90 42.46 2.94
60 61 0.396695 TGTCCTACCCGGCTTAGGAG 60.397 60.000 23.88 5.60 44.79 3.69
61 62 0.106318 GTCCTACCCGGCTTAGGAGA 60.106 60.000 23.88 7.29 44.79 3.71
62 63 0.858369 TCCTACCCGGCTTAGGAGAT 59.142 55.000 20.90 0.00 40.26 2.75
63 64 1.219724 TCCTACCCGGCTTAGGAGATT 59.780 52.381 20.90 0.00 40.26 2.40
64 65 2.047830 CCTACCCGGCTTAGGAGATTT 58.952 52.381 18.52 0.00 38.84 2.17
65 66 2.037381 CCTACCCGGCTTAGGAGATTTC 59.963 54.545 18.52 0.00 38.84 2.17
66 67 1.880941 ACCCGGCTTAGGAGATTTCT 58.119 50.000 0.00 0.00 0.00 2.52
67 68 1.763545 ACCCGGCTTAGGAGATTTCTC 59.236 52.381 0.00 0.00 42.14 2.87
82 83 6.642733 AGATTTCTCCTTACTTGGGAATCA 57.357 37.500 0.00 0.00 31.92 2.57
83 84 7.218314 AGATTTCTCCTTACTTGGGAATCAT 57.782 36.000 0.00 0.00 31.92 2.45
84 85 8.337118 AGATTTCTCCTTACTTGGGAATCATA 57.663 34.615 0.00 0.00 31.92 2.15
85 86 8.953665 AGATTTCTCCTTACTTGGGAATCATAT 58.046 33.333 0.00 0.00 31.92 1.78
86 87 8.930846 ATTTCTCCTTACTTGGGAATCATATG 57.069 34.615 0.00 0.00 31.92 1.78
87 88 5.869579 TCTCCTTACTTGGGAATCATATGC 58.130 41.667 0.00 0.00 31.92 3.14
88 89 5.369404 TCTCCTTACTTGGGAATCATATGCA 59.631 40.000 0.00 0.00 31.92 3.96
89 90 5.376625 TCCTTACTTGGGAATCATATGCAC 58.623 41.667 0.00 0.00 0.00 4.57
90 91 5.104151 TCCTTACTTGGGAATCATATGCACA 60.104 40.000 0.00 0.00 0.00 4.57
91 92 5.593909 CCTTACTTGGGAATCATATGCACAA 59.406 40.000 0.00 0.00 0.00 3.33
92 93 6.238842 CCTTACTTGGGAATCATATGCACAAG 60.239 42.308 17.37 17.37 39.60 3.16
93 94 3.382546 ACTTGGGAATCATATGCACAAGC 59.617 43.478 18.36 0.00 37.84 4.01
94 95 2.309613 TGGGAATCATATGCACAAGCC 58.690 47.619 0.00 0.00 41.13 4.35
95 96 1.615392 GGGAATCATATGCACAAGCCC 59.385 52.381 0.00 0.00 41.13 5.19
96 97 2.309613 GGAATCATATGCACAAGCCCA 58.690 47.619 0.00 0.00 41.13 5.36
97 98 2.694628 GGAATCATATGCACAAGCCCAA 59.305 45.455 0.00 0.00 41.13 4.12
98 99 3.491447 GGAATCATATGCACAAGCCCAAC 60.491 47.826 0.00 0.00 41.13 3.77
99 100 2.512692 TCATATGCACAAGCCCAACT 57.487 45.000 0.00 0.00 41.13 3.16
100 101 2.806434 TCATATGCACAAGCCCAACTT 58.194 42.857 0.00 0.00 41.13 2.66
156 157 6.757317 AGGTATATATGTAAGGGGATGAGCT 58.243 40.000 0.00 0.00 0.00 4.09
159 160 4.899352 ATATGTAAGGGGATGAGCTGAC 57.101 45.455 0.00 0.00 0.00 3.51
183 184 5.122396 CCTTTGCAGAAGACCACACTATTAC 59.878 44.000 9.37 0.00 0.00 1.89
187 188 4.865365 GCAGAAGACCACACTATTACAGAC 59.135 45.833 0.00 0.00 0.00 3.51
205 206 3.057104 CAGACCATGCAATCACACATTGT 60.057 43.478 0.00 0.00 0.00 2.71
213 214 4.278919 TGCAATCACACATTGTCACATCTT 59.721 37.500 0.00 0.00 0.00 2.40
222 223 0.605319 TGTCACATCTTTGGCGGTCC 60.605 55.000 0.00 0.00 0.00 4.46
223 224 0.605319 GTCACATCTTTGGCGGTCCA 60.605 55.000 0.00 0.00 41.55 4.02
236 237 1.448497 GGTCCAGACGAACCACCAA 59.552 57.895 0.00 0.00 35.53 3.67
237 238 0.179040 GGTCCAGACGAACCACCAAA 60.179 55.000 0.00 0.00 35.53 3.28
238 239 1.226746 GTCCAGACGAACCACCAAAG 58.773 55.000 0.00 0.00 0.00 2.77
239 240 1.124780 TCCAGACGAACCACCAAAGA 58.875 50.000 0.00 0.00 0.00 2.52
240 241 1.697432 TCCAGACGAACCACCAAAGAT 59.303 47.619 0.00 0.00 0.00 2.40
241 242 1.806542 CCAGACGAACCACCAAAGATG 59.193 52.381 0.00 0.00 0.00 2.90
251 252 3.642938 CCAAAGATGGTCCGGACAA 57.357 52.632 34.40 26.34 42.18 3.18
252 253 1.904287 CCAAAGATGGTCCGGACAAA 58.096 50.000 34.40 22.79 42.18 2.83
253 254 1.539827 CCAAAGATGGTCCGGACAAAC 59.460 52.381 34.40 23.43 42.18 2.93
254 255 1.539827 CAAAGATGGTCCGGACAAACC 59.460 52.381 34.40 19.49 36.03 3.27
257 258 2.511900 TGGTCCGGACAAACCACC 59.488 61.111 34.40 17.58 40.60 4.61
258 259 2.376165 TGGTCCGGACAAACCACCA 61.376 57.895 34.40 20.08 40.60 4.17
276 277 3.941483 CACCAAAGATAGACCCACATGAC 59.059 47.826 0.00 0.00 0.00 3.06
299 300 0.842030 TCAGGTGGTGCTCCAGGAAT 60.842 55.000 7.99 0.00 45.24 3.01
300 301 0.911769 CAGGTGGTGCTCCAGGAATA 59.088 55.000 7.99 0.00 45.24 1.75
301 302 1.492176 CAGGTGGTGCTCCAGGAATAT 59.508 52.381 7.99 0.00 45.24 1.28
302 303 2.092212 CAGGTGGTGCTCCAGGAATATT 60.092 50.000 7.99 0.00 45.24 1.28
303 304 2.582636 AGGTGGTGCTCCAGGAATATTT 59.417 45.455 7.99 0.00 45.24 1.40
304 305 3.785887 AGGTGGTGCTCCAGGAATATTTA 59.214 43.478 7.99 0.00 45.24 1.40
305 306 3.883489 GGTGGTGCTCCAGGAATATTTAC 59.117 47.826 7.99 0.00 45.24 2.01
306 307 3.883489 GTGGTGCTCCAGGAATATTTACC 59.117 47.826 7.99 0.00 45.24 2.85
313 314 6.716628 TGCTCCAGGAATATTTACCATTCATC 59.283 38.462 0.00 0.00 34.66 2.92
326 1984 0.544697 ATTCATCGCCGGTTTAGGGT 59.455 50.000 1.90 0.00 0.00 4.34
351 2009 5.073965 AGTTAGTATGTCTAGAGGGGAGAGG 59.926 48.000 0.00 0.00 0.00 3.69
353 2011 1.928480 ATGTCTAGAGGGGAGAGGGA 58.072 55.000 0.00 0.00 0.00 4.20
378 2036 9.553064 GATGAATAGACTACAGAAATGACCAAT 57.447 33.333 0.00 0.00 0.00 3.16
417 2077 6.588719 TCCTGATGAGGTGGTTTTTATTTG 57.411 37.500 0.00 0.00 40.76 2.32
420 2080 7.393234 TCCTGATGAGGTGGTTTTTATTTGTAG 59.607 37.037 0.00 0.00 40.76 2.74
441 2101 3.885297 AGCCATCTCAAAAATATCGGTGG 59.115 43.478 0.00 0.00 0.00 4.61
442 2102 3.550842 GCCATCTCAAAAATATCGGTGGC 60.551 47.826 0.00 0.00 42.19 5.01
448 2108 1.828979 AAAATATCGGTGGCGTGGTT 58.171 45.000 0.00 0.00 0.00 3.67
464 2124 2.013400 TGGTTGTGCATATGCTTACCG 58.987 47.619 27.13 0.00 42.66 4.02
465 2125 1.268539 GGTTGTGCATATGCTTACCGC 60.269 52.381 27.13 13.02 42.66 5.68
488 2148 3.875727 CTCACCGTCTCCGATAGTTTAGA 59.124 47.826 0.00 0.00 35.63 2.10
497 2157 4.856664 TCCGATAGTTTAGATTCTGCGAC 58.143 43.478 0.00 0.00 0.00 5.19
515 2175 4.098960 TGCGACGACTCCTTTTTCCTATAT 59.901 41.667 0.00 0.00 0.00 0.86
534 2194 9.516314 TCCTATATAGATAATTTTGCGACGATG 57.484 33.333 11.53 0.00 0.00 3.84
541 2201 2.679355 TTTTGCGACGATGGTCAAAG 57.321 45.000 8.67 0.00 43.61 2.77
543 2203 0.882484 TTGCGACGATGGTCAAAGCA 60.882 50.000 8.67 6.73 43.61 3.91
544 2204 1.132640 GCGACGATGGTCAAAGCAC 59.867 57.895 8.67 0.00 43.61 4.40
545 2205 1.291877 GCGACGATGGTCAAAGCACT 61.292 55.000 8.67 0.00 43.61 4.40
600 2260 4.780815 TGAATTTAACTGCCTCGGATGAT 58.219 39.130 0.00 0.00 0.00 2.45
601 2261 4.576053 TGAATTTAACTGCCTCGGATGATG 59.424 41.667 0.00 0.00 0.00 3.07
609 2269 1.409064 GCCTCGGATGATGTGTGTCTA 59.591 52.381 0.00 0.00 0.00 2.59
611 2271 3.646946 CCTCGGATGATGTGTGTCTATG 58.353 50.000 0.00 0.00 0.00 2.23
632 2292 5.477607 TGTATAGTTGGTGTTGTGCTAGT 57.522 39.130 0.00 0.00 0.00 2.57
635 2295 7.094631 TGTATAGTTGGTGTTGTGCTAGTTAG 58.905 38.462 0.00 0.00 0.00 2.34
641 2301 3.497262 GGTGTTGTGCTAGTTAGTGAACC 59.503 47.826 0.00 0.00 36.08 3.62
663 2323 1.209747 AGGGTTCGATTGGAGTTAGCC 59.790 52.381 0.00 0.00 0.00 3.93
666 2326 2.280628 GTTCGATTGGAGTTAGCCCAG 58.719 52.381 0.00 0.00 34.77 4.45
709 2369 1.338105 CCATGTGACGGAGACATGTGT 60.338 52.381 1.15 0.00 46.25 3.72
710 2370 2.094234 CCATGTGACGGAGACATGTGTA 60.094 50.000 1.15 0.00 46.25 2.90
711 2371 3.430790 CCATGTGACGGAGACATGTGTAT 60.431 47.826 1.15 0.00 46.25 2.29
712 2372 4.202111 CCATGTGACGGAGACATGTGTATA 60.202 45.833 1.15 0.00 46.25 1.47
744 2404 7.924947 TGAGCATAAGATGACAATAGAGAACTG 59.075 37.037 0.00 0.00 0.00 3.16
745 2405 7.790027 AGCATAAGATGACAATAGAGAACTGT 58.210 34.615 0.00 0.00 0.00 3.55
746 2406 7.925483 AGCATAAGATGACAATAGAGAACTGTC 59.075 37.037 0.00 0.00 39.93 3.51
747 2407 7.925483 GCATAAGATGACAATAGAGAACTGTCT 59.075 37.037 3.39 0.00 40.14 3.41
750 2410 8.588290 AAGATGACAATAGAGAACTGTCTAGT 57.412 34.615 3.39 0.00 40.14 2.57
752 2412 8.465999 AGATGACAATAGAGAACTGTCTAGTTG 58.534 37.037 0.00 0.00 46.79 3.16
753 2413 7.761038 TGACAATAGAGAACTGTCTAGTTGA 57.239 36.000 0.00 0.00 46.79 3.18
754 2414 8.354711 TGACAATAGAGAACTGTCTAGTTGAT 57.645 34.615 0.00 0.00 46.79 2.57
755 2415 8.246871 TGACAATAGAGAACTGTCTAGTTGATG 58.753 37.037 0.00 0.00 46.79 3.07
756 2416 8.354711 ACAATAGAGAACTGTCTAGTTGATGA 57.645 34.615 0.00 0.00 46.79 2.92
757 2417 8.247562 ACAATAGAGAACTGTCTAGTTGATGAC 58.752 37.037 0.00 0.00 46.79 3.06
758 2418 7.946381 ATAGAGAACTGTCTAGTTGATGACA 57.054 36.000 0.00 0.00 46.79 3.58
759 2419 6.656632 AGAGAACTGTCTAGTTGATGACAA 57.343 37.500 0.00 0.00 46.79 3.18
808 2468 7.807433 CAGCTGATGACAATAGAGTATGAGTAC 59.193 40.741 8.42 0.00 0.00 2.73
810 2470 7.203255 TGATGACAATAGAGTATGAGTACCG 57.797 40.000 0.00 0.00 0.00 4.02
923 2589 9.515226 GTACCATGGCTTTTGGATATAAATAGA 57.485 33.333 13.04 0.00 37.69 1.98
1001 2667 4.150804 GCTATTGCTTGCGACTATACTTCC 59.849 45.833 0.00 0.00 36.03 3.46
1006 2672 4.043073 GCTTGCGACTATACTTCCTACAC 58.957 47.826 0.00 0.00 0.00 2.90
1105 2771 3.565961 TTGGAAGCATCGCCAGCCA 62.566 57.895 0.00 0.00 35.23 4.75
1187 2853 3.554692 CGTGCCTTCGTCATCGCC 61.555 66.667 0.00 0.00 36.96 5.54
1344 3010 3.927163 AAGTTCCTGTACGCGCCCG 62.927 63.158 5.73 0.00 41.14 6.13
1472 3138 1.227943 CTGGATGGGGTATGTGGCG 60.228 63.158 0.00 0.00 0.00 5.69
1518 3184 4.776322 TGGGGAGGCGCGACATTG 62.776 66.667 17.71 0.00 0.00 2.82
1520 3186 2.746277 GGGAGGCGCGACATTGTT 60.746 61.111 17.71 0.00 0.00 2.83
1559 3225 5.872617 CACCGTGATGAAACTGGAGTATTTA 59.127 40.000 0.00 0.00 0.00 1.40
1561 3227 6.594159 ACCGTGATGAAACTGGAGTATTTAAG 59.406 38.462 0.00 0.00 0.00 1.85
1568 3234 1.859080 CTGGAGTATTTAAGCGACGGC 59.141 52.381 0.00 0.00 40.37 5.68
1631 3297 2.508663 GCGACCGCCTACAAGGAC 60.509 66.667 2.55 0.00 37.67 3.85
1634 3300 2.995574 ACCGCCTACAAGGACGCT 60.996 61.111 0.00 0.00 37.67 5.07
1646 3312 2.434359 GACGCTAGGGTGCACCAC 60.434 66.667 35.78 24.52 43.89 4.16
1703 3369 1.885887 TCCAAGCACAATAACACCAGC 59.114 47.619 0.00 0.00 0.00 4.85
1731 3397 7.824289 TCCAAGATCAGGTATTACTTCACTTTG 59.176 37.037 0.00 0.00 0.00 2.77
1737 3403 8.974060 TCAGGTATTACTTCACTTTGAACTTT 57.026 30.769 0.00 0.00 32.21 2.66
1738 3404 9.403583 TCAGGTATTACTTCACTTTGAACTTTT 57.596 29.630 0.00 0.00 32.21 2.27
1771 3439 9.793259 AACTATTGAACTGAATTAAGAAGTGGA 57.207 29.630 0.00 0.00 0.00 4.02
1795 3463 9.856488 GGAAAATTATTTTGGAGGTACTTCTTC 57.144 33.333 7.72 0.00 32.94 2.87
1968 3641 8.198778 GGTCAAAGGTAGAAACAAAAATACCAA 58.801 33.333 3.31 0.00 40.16 3.67
1969 3642 9.244799 GTCAAAGGTAGAAACAAAAATACCAAG 57.755 33.333 3.31 0.00 40.16 3.61
1974 3647 6.854381 GGTAGAAACAAAAATACCAAGTGTCG 59.146 38.462 0.00 0.00 38.05 4.35
1979 3652 4.277174 ACAAAAATACCAAGTGTCGATGCA 59.723 37.500 0.00 0.00 0.00 3.96
1986 3659 2.355444 CCAAGTGTCGATGCATGCATAA 59.645 45.455 32.27 20.55 36.70 1.90
1988 3661 3.957671 AGTGTCGATGCATGCATAAAG 57.042 42.857 32.27 24.36 36.70 1.85
1992 3665 5.094812 GTGTCGATGCATGCATAAAGAAAA 58.905 37.500 32.27 18.73 36.70 2.29
1998 3671 6.141844 CGATGCATGCATAAAGAAAATGAGTC 59.858 38.462 32.27 14.74 36.70 3.36
2024 3697 4.238761 TCTTGTAACGGAACAGAGACAG 57.761 45.455 0.00 0.00 0.00 3.51
2025 3698 3.635373 TCTTGTAACGGAACAGAGACAGT 59.365 43.478 0.00 0.00 0.00 3.55
2029 3702 4.581824 TGTAACGGAACAGAGACAGTACTT 59.418 41.667 0.00 0.00 0.00 2.24
2030 3703 5.764686 TGTAACGGAACAGAGACAGTACTTA 59.235 40.000 0.00 0.00 0.00 2.24
2061 3734 9.515020 TCATCAATAACAAAACTTTCACAAGTC 57.485 29.630 0.00 0.00 42.89 3.01
2089 3762 0.388659 TGGTCAAGCCACAATTGTGC 59.611 50.000 29.42 23.70 43.61 4.57
2209 3882 1.188219 AGGTCAGCATCACCGTGACT 61.188 55.000 2.57 0.00 40.43 3.41
2266 3939 1.153568 CGTCGACATGGTGGCTCAT 60.154 57.895 17.16 0.00 0.00 2.90
2278 3951 1.107945 TGGCTCATGGCATCAATGTG 58.892 50.000 0.00 0.00 44.10 3.21
2302 3975 1.591703 TGCCTACTCCAAGCAGTCG 59.408 57.895 0.00 0.00 31.65 4.18
2374 4047 0.737219 GATTCAAGGCTGCAATCGCT 59.263 50.000 0.50 0.00 39.64 4.93
2389 4062 0.830648 TCGCTTCATTCCCCGATCTT 59.169 50.000 0.00 0.00 0.00 2.40
2392 4065 1.473434 GCTTCATTCCCCGATCTTCGT 60.473 52.381 0.00 0.00 38.40 3.85
2431 4104 0.609131 AATTTGACCCTGTGCCCTCG 60.609 55.000 0.00 0.00 0.00 4.63
2576 4249 3.760035 AGGTCTACCTGCACGGCG 61.760 66.667 4.80 4.80 46.55 6.46
2626 4299 2.047274 CGCCTGGTGGTCAATCGT 60.047 61.111 0.00 0.00 35.27 3.73
2629 4302 0.392998 GCCTGGTGGTCAATCGTGAT 60.393 55.000 0.00 0.00 35.80 3.06
2634 4307 2.565391 TGGTGGTCAATCGTGATGTAGT 59.435 45.455 0.00 0.00 35.80 2.73
2635 4308 2.930040 GGTGGTCAATCGTGATGTAGTG 59.070 50.000 0.00 0.00 35.80 2.74
2653 4326 0.823356 TGCTTCTGAACAAGTGGGCC 60.823 55.000 0.00 0.00 0.00 5.80
2728 4401 0.840288 AGTGCATGGTCAGGGGTGTA 60.840 55.000 0.00 0.00 0.00 2.90
2755 4428 3.309954 GCCACTGGAAATTCGATGACTAC 59.690 47.826 0.00 0.00 0.00 2.73
2761 4434 4.341235 TGGAAATTCGATGACTACGAGGAT 59.659 41.667 0.00 0.00 40.72 3.24
2787 4461 6.894339 CCAATTAAGTGGTTAGGTTTCACT 57.106 37.500 13.84 0.00 42.77 3.41
2789 4463 6.348213 CCAATTAAGTGGTTAGGTTTCACTCG 60.348 42.308 13.84 0.00 40.41 4.18
2806 4480 9.742552 GTTTCACTCGACTATGAATAAGTTTTC 57.257 33.333 3.54 0.00 34.87 2.29
2807 4481 9.706691 TTTCACTCGACTATGAATAAGTTTTCT 57.293 29.630 3.54 0.00 34.87 2.52
2829 4503 1.700955 GAGGATAACCACGGCCTCTA 58.299 55.000 0.00 0.00 42.81 2.43
2834 4508 0.742505 TAACCACGGCCTCTACATCG 59.257 55.000 0.00 0.00 0.00 3.84
2836 4510 1.065928 CCACGGCCTCTACATCGAC 59.934 63.158 0.00 0.00 0.00 4.20
2837 4511 1.065928 CACGGCCTCTACATCGACC 59.934 63.158 0.00 0.00 0.00 4.79
2847 4521 3.721851 CATCGACCGATGCATGCA 58.278 55.556 25.04 25.04 44.27 3.96
2848 4522 1.568025 CATCGACCGATGCATGCAG 59.432 57.895 26.69 15.02 44.27 4.41
2849 4523 2.249535 ATCGACCGATGCATGCAGC 61.250 57.895 25.69 25.69 45.96 5.25
2913 4605 6.620678 TGCCAAAAAGATCTGCTTATACAAC 58.379 36.000 0.00 0.00 35.24 3.32
2934 4626 5.598416 ACAAGAAAAAGGAAAACCTGAGG 57.402 39.130 0.00 0.00 0.00 3.86
2966 4664 3.610040 TGACCAGCTTCACGATTGTAT 57.390 42.857 0.00 0.00 0.00 2.29
2970 4668 2.791560 CCAGCTTCACGATTGTATCTCG 59.208 50.000 0.00 0.00 41.77 4.04
2974 4672 5.062183 CAGCTTCACGATTGTATCTCGAAAA 59.938 40.000 0.00 0.00 39.38 2.29
2975 4673 5.062308 AGCTTCACGATTGTATCTCGAAAAC 59.938 40.000 0.00 0.00 39.38 2.43
2977 4675 6.389622 TTCACGATTGTATCTCGAAAACTG 57.610 37.500 0.00 0.00 39.38 3.16
3034 4732 2.743752 CGAGCAACATGTGGCCTCG 61.744 63.158 21.86 22.77 0.00 4.63
3035 4733 1.375908 GAGCAACATGTGGCCTCGA 60.376 57.895 21.86 0.00 0.00 4.04
3076 4774 7.119262 TCCGTGAAAACATCTAAAGAAGGAATC 59.881 37.037 0.00 0.00 0.00 2.52
3078 4776 7.360101 CGTGAAAACATCTAAAGAAGGAATCGT 60.360 37.037 0.00 0.00 0.00 3.73
3080 4778 6.986904 AAACATCTAAAGAAGGAATCGTCC 57.013 37.500 0.00 0.00 45.35 4.79
3092 4790 1.940883 AATCGTCCTCCGCACGCTAA 61.941 55.000 0.00 0.00 37.18 3.09
3093 4791 1.735376 ATCGTCCTCCGCACGCTAAT 61.735 55.000 0.00 0.00 37.18 1.73
3105 4803 2.893637 CACGCTAATGTAGGCTGTTCT 58.106 47.619 0.00 0.00 0.00 3.01
3125 4823 3.191162 TCTGATCAAAGGAAAACATGGCG 59.809 43.478 0.00 0.00 0.00 5.69
3127 4825 3.571828 TGATCAAAGGAAAACATGGCGAA 59.428 39.130 0.00 0.00 0.00 4.70
3128 4826 3.641437 TCAAAGGAAAACATGGCGAAG 57.359 42.857 0.00 0.00 0.00 3.79
3165 4863 2.887152 ACTTCAAGCCAACATCCTCAAC 59.113 45.455 0.00 0.00 0.00 3.18
3172 4870 3.319122 AGCCAACATCCTCAACAAGAAAC 59.681 43.478 0.00 0.00 0.00 2.78
3174 4872 3.563808 CCAACATCCTCAACAAGAAACGA 59.436 43.478 0.00 0.00 0.00 3.85
3175 4873 4.527564 CAACATCCTCAACAAGAAACGAC 58.472 43.478 0.00 0.00 0.00 4.34
3176 4874 3.804036 ACATCCTCAACAAGAAACGACA 58.196 40.909 0.00 0.00 0.00 4.35
3225 4924 2.035832 CCAAAAAGGCGAAGTCATGGTT 59.964 45.455 0.00 0.00 0.00 3.67
3241 4940 1.677633 GTTATGCCACCCGCCAGTT 60.678 57.895 0.00 0.00 36.24 3.16
3242 4941 1.677300 TTATGCCACCCGCCAGTTG 60.677 57.895 0.00 0.00 36.24 3.16
3257 4956 2.104792 CCAGTTGGTGTCTCTTCCTTGA 59.895 50.000 0.00 0.00 0.00 3.02
3258 4957 3.244700 CCAGTTGGTGTCTCTTCCTTGAT 60.245 47.826 0.00 0.00 0.00 2.57
3259 4958 3.750130 CAGTTGGTGTCTCTTCCTTGATG 59.250 47.826 0.00 0.00 0.00 3.07
3260 4959 3.392616 AGTTGGTGTCTCTTCCTTGATGT 59.607 43.478 0.00 0.00 0.00 3.06
3261 4960 4.137543 GTTGGTGTCTCTTCCTTGATGTT 58.862 43.478 0.00 0.00 0.00 2.71
3262 4961 5.071788 AGTTGGTGTCTCTTCCTTGATGTTA 59.928 40.000 0.00 0.00 0.00 2.41
3263 4962 5.560722 TGGTGTCTCTTCCTTGATGTTAA 57.439 39.130 0.00 0.00 0.00 2.01
3264 4963 6.126863 TGGTGTCTCTTCCTTGATGTTAAT 57.873 37.500 0.00 0.00 0.00 1.40
3265 4964 6.542821 TGGTGTCTCTTCCTTGATGTTAATT 58.457 36.000 0.00 0.00 0.00 1.40
3270 4969 9.739276 TGTCTCTTCCTTGATGTTAATTATGTT 57.261 29.630 0.00 0.00 0.00 2.71
3300 4999 9.826574 TGTAACTATGTATAAGGTCACATTTCC 57.173 33.333 0.00 0.00 36.74 3.13
3314 5013 6.389906 GTCACATTTCCTAGATTGTTTTGGG 58.610 40.000 0.00 0.00 0.00 4.12
3335 5034 4.762251 GGGGAATATAAAGATGCAGTGGAC 59.238 45.833 0.00 0.00 0.00 4.02
3381 5088 5.830991 AGGCCAAGAACACACAGTTATTTTA 59.169 36.000 5.01 0.00 39.49 1.52
3382 5089 5.918576 GGCCAAGAACACACAGTTATTTTAC 59.081 40.000 0.00 0.00 39.49 2.01
3387 5094 9.599322 CAAGAACACACAGTTATTTTACTCATC 57.401 33.333 0.00 0.00 39.49 2.92
3390 5097 7.117241 ACACACAGTTATTTTACTCATCGTG 57.883 36.000 0.00 0.00 0.00 4.35
3391 5098 6.015504 CACACAGTTATTTTACTCATCGTGC 58.984 40.000 0.00 0.00 0.00 5.34
3392 5099 5.932303 ACACAGTTATTTTACTCATCGTGCT 59.068 36.000 0.00 0.00 0.00 4.40
3393 5100 6.128553 ACACAGTTATTTTACTCATCGTGCTG 60.129 38.462 0.00 0.00 0.00 4.41
3394 5101 5.163854 ACAGTTATTTTACTCATCGTGCTGC 60.164 40.000 0.00 0.00 0.00 5.25
3395 5102 5.063944 CAGTTATTTTACTCATCGTGCTGCT 59.936 40.000 0.00 0.00 0.00 4.24
3396 5103 6.255670 CAGTTATTTTACTCATCGTGCTGCTA 59.744 38.462 0.00 0.00 0.00 3.49
3397 5104 6.986817 AGTTATTTTACTCATCGTGCTGCTAT 59.013 34.615 0.00 0.00 0.00 2.97
3398 5105 8.141909 AGTTATTTTACTCATCGTGCTGCTATA 58.858 33.333 0.00 0.00 0.00 1.31
3399 5106 8.761497 GTTATTTTACTCATCGTGCTGCTATAA 58.239 33.333 0.00 0.00 0.00 0.98
3400 5107 7.969536 ATTTTACTCATCGTGCTGCTATAAT 57.030 32.000 0.00 0.00 0.00 1.28
3402 5109 8.880878 TTTTACTCATCGTGCTGCTATAATAA 57.119 30.769 0.00 0.00 0.00 1.40
3403 5110 9.489084 TTTTACTCATCGTGCTGCTATAATAAT 57.511 29.630 0.00 0.00 0.00 1.28
3404 5111 8.689251 TTACTCATCGTGCTGCTATAATAATC 57.311 34.615 0.00 0.00 0.00 1.75
3405 5112 6.102663 ACTCATCGTGCTGCTATAATAATCC 58.897 40.000 0.00 0.00 0.00 3.01
3406 5113 6.071108 ACTCATCGTGCTGCTATAATAATCCT 60.071 38.462 0.00 0.00 0.00 3.24
3407 5114 6.333416 TCATCGTGCTGCTATAATAATCCTC 58.667 40.000 0.00 0.00 0.00 3.71
3408 5115 4.733850 TCGTGCTGCTATAATAATCCTCG 58.266 43.478 0.00 0.00 0.00 4.63
3425 5132 2.036571 CGTGCAGAGCAAGGCATCA 61.037 57.895 0.00 0.00 41.47 3.07
3435 5142 3.656559 AGCAAGGCATCAAATCAACAAC 58.343 40.909 0.00 0.00 0.00 3.32
3452 5159 5.184864 TCAACAACAACAAATCCTTGTCAGT 59.815 36.000 0.00 0.00 45.25 3.41
3476 5183 4.103365 TGGCGCAACATAAAATACTTGG 57.897 40.909 10.83 0.00 0.00 3.61
3505 5212 6.202954 TGCTAGCTTTTCTGTTCTACAAGTTC 59.797 38.462 17.23 0.00 0.00 3.01
3509 5216 6.481644 AGCTTTTCTGTTCTACAAGTTCTCTG 59.518 38.462 0.00 0.00 0.00 3.35
3533 5240 9.093970 CTGTATATAGTAAGAGATGAGAGGTCG 57.906 40.741 0.00 0.00 0.00 4.79
3535 5242 9.656040 GTATATAGTAAGAGATGAGAGGTCGAA 57.344 37.037 0.00 0.00 0.00 3.71
3537 5244 3.949113 AGTAAGAGATGAGAGGTCGAACC 59.051 47.826 0.00 0.00 38.99 3.62
3547 5254 7.724506 AGATGAGAGGTCGAACCAACTATATTA 59.275 37.037 0.00 0.00 41.95 0.98
3581 5288 9.553064 GTAGGATCCATTCATATATGATCCAAC 57.447 37.037 24.46 12.93 36.15 3.77
3602 5309 3.509184 ACTTGTTACTCCCTCCGTAAGAC 59.491 47.826 0.00 0.00 43.02 3.01
3623 5330 6.878317 AGACATGAGTAATTTCGATCAGGAA 58.122 36.000 0.00 0.00 0.00 3.36
3624 5331 6.758886 AGACATGAGTAATTTCGATCAGGAAC 59.241 38.462 0.00 0.00 0.00 3.62
3640 5347 1.076332 GAACTGTGCCACGTGATACC 58.924 55.000 19.30 2.79 0.00 2.73
3644 5351 0.604243 TGTGCCACGTGATACCCAAC 60.604 55.000 19.30 4.84 0.00 3.77
3697 5404 1.086696 CTGTCTTGCCATGTTACCCG 58.913 55.000 0.00 0.00 0.00 5.28
3727 5434 2.177531 CGTGGACGGACGTACCAG 59.822 66.667 13.55 1.47 38.90 4.00
3748 5459 0.103937 AGCAGAGCAGCTAACCGATC 59.896 55.000 0.00 0.00 44.50 3.69
3749 5460 1.211818 GCAGAGCAGCTAACCGATCG 61.212 60.000 8.51 8.51 0.00 3.69
3762 5473 1.371022 CGATCGAGGTCCATCGCTG 60.371 63.158 10.26 0.00 42.43 5.18
3772 5483 1.064060 GTCCATCGCTGTAATTGGCAC 59.936 52.381 0.00 0.00 0.00 5.01
3778 5489 1.739466 CGCTGTAATTGGCACACTGAT 59.261 47.619 0.00 0.00 39.29 2.90
3779 5490 2.223112 CGCTGTAATTGGCACACTGATC 60.223 50.000 0.00 0.00 39.29 2.92
3780 5491 2.223112 GCTGTAATTGGCACACTGATCG 60.223 50.000 0.00 0.00 39.29 3.69
3781 5492 3.261580 CTGTAATTGGCACACTGATCGA 58.738 45.455 0.00 0.00 39.29 3.59
3782 5493 3.261580 TGTAATTGGCACACTGATCGAG 58.738 45.455 0.00 0.00 39.29 4.04
3783 5494 2.479566 AATTGGCACACTGATCGAGT 57.520 45.000 0.00 0.00 39.29 4.18
3784 5495 2.479566 ATTGGCACACTGATCGAGTT 57.520 45.000 0.00 0.00 39.29 3.01
3785 5496 1.795768 TTGGCACACTGATCGAGTTC 58.204 50.000 0.00 0.00 39.29 3.01
3786 5497 0.969149 TGGCACACTGATCGAGTTCT 59.031 50.000 0.00 0.00 29.75 3.01
3787 5498 1.344438 TGGCACACTGATCGAGTTCTT 59.656 47.619 0.00 0.00 29.75 2.52
3788 5499 1.728971 GGCACACTGATCGAGTTCTTG 59.271 52.381 0.00 0.00 29.75 3.02
3789 5500 1.127582 GCACACTGATCGAGTTCTTGC 59.872 52.381 0.00 0.00 29.75 4.01
3790 5501 2.681706 CACACTGATCGAGTTCTTGCT 58.318 47.619 0.00 0.00 29.75 3.91
3791 5502 3.838120 CACACTGATCGAGTTCTTGCTA 58.162 45.455 0.00 0.00 29.75 3.49
3792 5503 3.610242 CACACTGATCGAGTTCTTGCTAC 59.390 47.826 0.00 0.00 29.75 3.58
3793 5504 3.508012 ACACTGATCGAGTTCTTGCTACT 59.492 43.478 0.00 0.00 29.75 2.57
3794 5505 4.101942 CACTGATCGAGTTCTTGCTACTC 58.898 47.826 0.00 0.00 38.88 2.59
3795 5506 4.013728 ACTGATCGAGTTCTTGCTACTCT 58.986 43.478 0.00 0.00 39.86 3.24
3796 5507 5.065346 CACTGATCGAGTTCTTGCTACTCTA 59.935 44.000 0.00 0.00 39.86 2.43
3797 5508 5.065474 ACTGATCGAGTTCTTGCTACTCTAC 59.935 44.000 0.00 0.00 39.86 2.59
3798 5509 4.941873 TGATCGAGTTCTTGCTACTCTACA 59.058 41.667 0.00 0.00 39.86 2.74
3799 5510 4.681835 TCGAGTTCTTGCTACTCTACAC 57.318 45.455 0.00 0.00 39.86 2.90
3800 5511 4.070009 TCGAGTTCTTGCTACTCTACACA 58.930 43.478 0.00 0.00 39.86 3.72
3801 5512 4.154375 TCGAGTTCTTGCTACTCTACACAG 59.846 45.833 0.00 0.00 39.86 3.66
3802 5513 4.154375 CGAGTTCTTGCTACTCTACACAGA 59.846 45.833 0.00 0.00 39.86 3.41
3803 5514 5.163703 CGAGTTCTTGCTACTCTACACAGAT 60.164 44.000 0.00 0.00 39.86 2.90
3804 5515 5.960113 AGTTCTTGCTACTCTACACAGATG 58.040 41.667 0.00 0.00 0.00 2.90
3805 5516 4.991153 TCTTGCTACTCTACACAGATGG 57.009 45.455 0.00 0.00 0.00 3.51
3806 5517 3.131223 TCTTGCTACTCTACACAGATGGC 59.869 47.826 0.00 0.00 0.00 4.40
3807 5518 1.405463 TGCTACTCTACACAGATGGCG 59.595 52.381 0.00 0.00 0.00 5.69
3808 5519 1.676529 GCTACTCTACACAGATGGCGA 59.323 52.381 0.00 0.00 0.00 5.54
3809 5520 2.541999 GCTACTCTACACAGATGGCGAC 60.542 54.545 0.00 0.00 0.00 5.19
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.095782 GTCCGACTCCATATCTCTATCTGC 59.904 50.000 0.00 0.00 0.00 4.26
1 2 5.496556 AGTCCGACTCCATATCTCTATCTG 58.503 45.833 0.00 0.00 0.00 2.90
2 3 5.772393 AGTCCGACTCCATATCTCTATCT 57.228 43.478 0.00 0.00 0.00 1.98
3 4 6.402766 CGAAAGTCCGACTCCATATCTCTATC 60.403 46.154 0.35 0.00 0.00 2.08
4 5 5.413213 CGAAAGTCCGACTCCATATCTCTAT 59.587 44.000 0.35 0.00 0.00 1.98
5 6 4.755629 CGAAAGTCCGACTCCATATCTCTA 59.244 45.833 0.35 0.00 0.00 2.43
6 7 3.566322 CGAAAGTCCGACTCCATATCTCT 59.434 47.826 0.35 0.00 0.00 3.10
7 8 3.854045 GCGAAAGTCCGACTCCATATCTC 60.854 52.174 0.35 0.00 0.00 2.75
8 9 2.034812 GCGAAAGTCCGACTCCATATCT 59.965 50.000 0.35 0.00 0.00 1.98
9 10 2.223735 TGCGAAAGTCCGACTCCATATC 60.224 50.000 0.35 0.00 0.00 1.63
10 11 1.754803 TGCGAAAGTCCGACTCCATAT 59.245 47.619 0.35 0.00 0.00 1.78
11 12 1.179152 TGCGAAAGTCCGACTCCATA 58.821 50.000 0.35 0.00 0.00 2.74
12 13 0.537188 ATGCGAAAGTCCGACTCCAT 59.463 50.000 0.35 0.53 0.00 3.41
13 14 1.134367 CTATGCGAAAGTCCGACTCCA 59.866 52.381 0.35 0.00 0.00 3.86
14 15 1.404391 TCTATGCGAAAGTCCGACTCC 59.596 52.381 0.35 0.00 0.00 3.85
15 16 2.846039 TCTATGCGAAAGTCCGACTC 57.154 50.000 0.35 0.00 0.00 3.36
16 17 3.251571 GTTTCTATGCGAAAGTCCGACT 58.748 45.455 0.00 0.00 42.01 4.18
17 18 2.347755 GGTTTCTATGCGAAAGTCCGAC 59.652 50.000 0.00 0.00 42.01 4.79
18 19 2.613691 GGTTTCTATGCGAAAGTCCGA 58.386 47.619 0.00 0.00 42.01 4.55
19 20 1.323534 CGGTTTCTATGCGAAAGTCCG 59.676 52.381 0.00 0.00 42.01 4.79
20 21 2.613691 TCGGTTTCTATGCGAAAGTCC 58.386 47.619 0.00 0.00 42.01 3.85
21 22 3.617263 ACATCGGTTTCTATGCGAAAGTC 59.383 43.478 0.00 0.00 42.01 3.01
22 23 3.596214 ACATCGGTTTCTATGCGAAAGT 58.404 40.909 0.00 0.00 42.01 2.66
23 24 3.001330 GGACATCGGTTTCTATGCGAAAG 59.999 47.826 0.00 0.00 42.01 2.62
24 25 2.933906 GGACATCGGTTTCTATGCGAAA 59.066 45.455 0.00 0.00 39.23 3.46
25 26 2.167693 AGGACATCGGTTTCTATGCGAA 59.832 45.455 0.00 0.00 0.00 4.70
26 27 1.754803 AGGACATCGGTTTCTATGCGA 59.245 47.619 0.00 0.00 0.00 5.10
27 28 2.225068 AGGACATCGGTTTCTATGCG 57.775 50.000 0.00 0.00 0.00 4.73
28 29 3.391049 GGTAGGACATCGGTTTCTATGC 58.609 50.000 0.00 0.00 0.00 3.14
29 30 3.552273 CGGGTAGGACATCGGTTTCTATG 60.552 52.174 0.00 0.00 0.00 2.23
30 31 2.626743 CGGGTAGGACATCGGTTTCTAT 59.373 50.000 0.00 0.00 0.00 1.98
31 32 2.026641 CGGGTAGGACATCGGTTTCTA 58.973 52.381 0.00 0.00 0.00 2.10
32 33 0.822164 CGGGTAGGACATCGGTTTCT 59.178 55.000 0.00 0.00 0.00 2.52
33 34 0.179092 CCGGGTAGGACATCGGTTTC 60.179 60.000 0.00 0.00 45.00 2.78
34 35 1.902556 CCGGGTAGGACATCGGTTT 59.097 57.895 0.00 0.00 45.00 3.27
35 36 2.728435 GCCGGGTAGGACATCGGTT 61.728 63.158 2.18 0.00 45.00 4.44
36 37 3.152400 GCCGGGTAGGACATCGGT 61.152 66.667 2.18 0.00 45.00 4.69
37 38 1.111116 TAAGCCGGGTAGGACATCGG 61.111 60.000 6.57 0.00 45.00 4.18
38 39 0.314302 CTAAGCCGGGTAGGACATCG 59.686 60.000 6.57 0.00 45.00 3.84
39 40 0.680061 CCTAAGCCGGGTAGGACATC 59.320 60.000 18.75 0.00 45.00 3.06
40 41 0.263765 TCCTAAGCCGGGTAGGACAT 59.736 55.000 20.92 3.54 41.83 3.06
41 42 0.396695 CTCCTAAGCCGGGTAGGACA 60.397 60.000 20.92 8.31 41.83 4.02
42 43 0.106318 TCTCCTAAGCCGGGTAGGAC 60.106 60.000 20.92 0.00 41.83 3.85
43 44 0.858369 ATCTCCTAAGCCGGGTAGGA 59.142 55.000 22.40 22.40 43.98 2.94
44 45 1.718280 AATCTCCTAAGCCGGGTAGG 58.282 55.000 6.57 14.25 44.97 3.18
45 46 2.966516 AGAAATCTCCTAAGCCGGGTAG 59.033 50.000 6.57 0.00 0.00 3.18
46 47 2.963782 GAGAAATCTCCTAAGCCGGGTA 59.036 50.000 6.57 0.00 37.02 3.69
47 48 1.763545 GAGAAATCTCCTAAGCCGGGT 59.236 52.381 0.00 0.00 37.02 5.28
48 49 2.535012 GAGAAATCTCCTAAGCCGGG 57.465 55.000 2.18 0.00 37.02 5.73
58 59 6.653989 TGATTCCCAAGTAAGGAGAAATCTC 58.346 40.000 1.68 1.68 42.14 2.75
59 60 6.642733 TGATTCCCAAGTAAGGAGAAATCT 57.357 37.500 0.00 0.00 34.08 2.40
60 61 9.007901 CATATGATTCCCAAGTAAGGAGAAATC 57.992 37.037 0.00 0.00 34.08 2.17
61 62 7.449704 GCATATGATTCCCAAGTAAGGAGAAAT 59.550 37.037 6.97 0.00 34.08 2.17
62 63 6.772716 GCATATGATTCCCAAGTAAGGAGAAA 59.227 38.462 6.97 0.00 34.08 2.52
63 64 6.126507 TGCATATGATTCCCAAGTAAGGAGAA 60.127 38.462 6.97 0.00 34.08 2.87
64 65 5.369404 TGCATATGATTCCCAAGTAAGGAGA 59.631 40.000 6.97 0.00 34.08 3.71
65 66 5.471456 GTGCATATGATTCCCAAGTAAGGAG 59.529 44.000 6.97 0.00 34.08 3.69
66 67 5.104151 TGTGCATATGATTCCCAAGTAAGGA 60.104 40.000 6.97 0.00 0.00 3.36
67 68 5.132502 TGTGCATATGATTCCCAAGTAAGG 58.867 41.667 6.97 0.00 0.00 2.69
68 69 6.698008 TTGTGCATATGATTCCCAAGTAAG 57.302 37.500 6.97 0.00 0.00 2.34
69 70 5.067674 GCTTGTGCATATGATTCCCAAGTAA 59.932 40.000 6.97 0.00 39.41 2.24
70 71 4.580167 GCTTGTGCATATGATTCCCAAGTA 59.420 41.667 6.97 0.00 39.41 2.24
71 72 3.382546 GCTTGTGCATATGATTCCCAAGT 59.617 43.478 6.97 0.00 39.41 3.16
72 73 3.243636 GGCTTGTGCATATGATTCCCAAG 60.244 47.826 6.97 10.51 41.91 3.61
73 74 2.694628 GGCTTGTGCATATGATTCCCAA 59.305 45.455 6.97 0.47 41.91 4.12
74 75 2.309613 GGCTTGTGCATATGATTCCCA 58.690 47.619 6.97 0.00 41.91 4.37
75 76 1.615392 GGGCTTGTGCATATGATTCCC 59.385 52.381 6.97 3.76 41.91 3.97
76 77 2.309613 TGGGCTTGTGCATATGATTCC 58.690 47.619 6.97 0.00 41.91 3.01
77 78 3.382546 AGTTGGGCTTGTGCATATGATTC 59.617 43.478 6.97 0.00 41.91 2.52
78 79 3.368248 AGTTGGGCTTGTGCATATGATT 58.632 40.909 6.97 0.00 41.91 2.57
79 80 3.022557 AGTTGGGCTTGTGCATATGAT 57.977 42.857 6.97 0.00 41.91 2.45
80 81 2.512692 AGTTGGGCTTGTGCATATGA 57.487 45.000 6.97 0.00 41.91 2.15
90 91 1.065418 CCGTCCTATCAAGTTGGGCTT 60.065 52.381 2.34 0.00 38.08 4.35
91 92 0.541863 CCGTCCTATCAAGTTGGGCT 59.458 55.000 2.34 0.00 0.00 5.19
92 93 1.095807 GCCGTCCTATCAAGTTGGGC 61.096 60.000 2.34 2.13 0.00 5.36
93 94 0.463833 GGCCGTCCTATCAAGTTGGG 60.464 60.000 2.34 0.00 0.00 4.12
94 95 0.541863 AGGCCGTCCTATCAAGTTGG 59.458 55.000 2.34 0.00 42.06 3.77
95 96 2.009774 CAAGGCCGTCCTATCAAGTTG 58.990 52.381 0.00 0.00 43.40 3.16
96 97 1.906574 TCAAGGCCGTCCTATCAAGTT 59.093 47.619 0.00 0.00 43.40 2.66
97 98 1.568504 TCAAGGCCGTCCTATCAAGT 58.431 50.000 0.00 0.00 43.40 3.16
98 99 2.280628 GTTCAAGGCCGTCCTATCAAG 58.719 52.381 0.00 0.00 43.40 3.02
99 100 1.065709 GGTTCAAGGCCGTCCTATCAA 60.066 52.381 0.00 0.00 43.40 2.57
100 101 0.539986 GGTTCAAGGCCGTCCTATCA 59.460 55.000 0.00 0.00 43.40 2.15
101 102 0.831307 AGGTTCAAGGCCGTCCTATC 59.169 55.000 0.00 0.00 43.40 2.08
102 103 2.040178 CTAGGTTCAAGGCCGTCCTAT 58.960 52.381 5.30 0.00 43.40 2.57
103 104 1.481871 CTAGGTTCAAGGCCGTCCTA 58.518 55.000 0.00 0.31 43.40 2.94
105 106 1.449778 GCTAGGTTCAAGGCCGTCC 60.450 63.158 0.00 0.00 0.00 4.79
106 107 0.822164 TAGCTAGGTTCAAGGCCGTC 59.178 55.000 0.00 0.00 0.00 4.79
107 108 1.207329 CTTAGCTAGGTTCAAGGCCGT 59.793 52.381 0.00 0.00 0.00 5.68
108 109 1.480954 TCTTAGCTAGGTTCAAGGCCG 59.519 52.381 0.00 0.00 0.00 6.13
156 157 1.211703 TGTGGTCTTCTGCAAAGGTCA 59.788 47.619 8.23 5.39 0.00 4.02
159 160 1.972872 AGTGTGGTCTTCTGCAAAGG 58.027 50.000 8.23 0.00 0.00 3.11
183 184 3.057104 ACAATGTGTGATTGCATGGTCTG 60.057 43.478 0.00 0.00 32.55 3.51
187 188 3.247442 GTGACAATGTGTGATTGCATGG 58.753 45.455 0.00 0.00 32.55 3.66
205 206 0.321564 CTGGACCGCCAAAGATGTGA 60.322 55.000 0.00 0.00 45.41 3.58
213 214 2.029964 GTTCGTCTGGACCGCCAA 59.970 61.111 0.00 0.00 45.41 4.52
222 223 1.806542 CCATCTTTGGTGGTTCGTCTG 59.193 52.381 0.00 0.00 38.30 3.51
223 224 2.185004 CCATCTTTGGTGGTTCGTCT 57.815 50.000 0.00 0.00 38.30 4.18
236 237 0.768622 TGGTTTGTCCGGACCATCTT 59.231 50.000 31.19 0.00 40.85 2.40
237 238 0.036306 GTGGTTTGTCCGGACCATCT 59.964 55.000 31.19 0.00 46.74 2.90
238 239 0.958876 GGTGGTTTGTCCGGACCATC 60.959 60.000 31.19 19.22 46.74 3.51
239 240 1.074248 GGTGGTTTGTCCGGACCAT 59.926 57.895 31.19 0.00 46.74 3.55
240 241 1.923006 TTGGTGGTTTGTCCGGACCA 61.923 55.000 31.19 20.04 43.37 4.02
241 242 0.752376 TTTGGTGGTTTGTCCGGACC 60.752 55.000 31.19 17.46 39.52 4.46
242 243 0.666374 CTTTGGTGGTTTGTCCGGAC 59.334 55.000 28.17 28.17 39.52 4.79
243 244 0.547075 TCTTTGGTGGTTTGTCCGGA 59.453 50.000 0.00 0.00 39.52 5.14
244 245 1.616159 ATCTTTGGTGGTTTGTCCGG 58.384 50.000 0.00 0.00 39.52 5.14
245 246 3.435671 GTCTATCTTTGGTGGTTTGTCCG 59.564 47.826 0.00 0.00 39.52 4.79
246 247 3.756963 GGTCTATCTTTGGTGGTTTGTCC 59.243 47.826 0.00 0.00 0.00 4.02
247 248 3.756963 GGGTCTATCTTTGGTGGTTTGTC 59.243 47.826 0.00 0.00 0.00 3.18
248 249 3.139397 TGGGTCTATCTTTGGTGGTTTGT 59.861 43.478 0.00 0.00 0.00 2.83
249 250 3.506067 GTGGGTCTATCTTTGGTGGTTTG 59.494 47.826 0.00 0.00 0.00 2.93
250 251 3.139397 TGTGGGTCTATCTTTGGTGGTTT 59.861 43.478 0.00 0.00 0.00 3.27
251 252 2.714250 TGTGGGTCTATCTTTGGTGGTT 59.286 45.455 0.00 0.00 0.00 3.67
252 253 2.344592 TGTGGGTCTATCTTTGGTGGT 58.655 47.619 0.00 0.00 0.00 4.16
253 254 3.054434 TCATGTGGGTCTATCTTTGGTGG 60.054 47.826 0.00 0.00 0.00 4.61
254 255 3.941483 GTCATGTGGGTCTATCTTTGGTG 59.059 47.826 0.00 0.00 0.00 4.17
255 256 3.587061 TGTCATGTGGGTCTATCTTTGGT 59.413 43.478 0.00 0.00 0.00 3.67
256 257 4.220693 TGTCATGTGGGTCTATCTTTGG 57.779 45.455 0.00 0.00 0.00 3.28
257 258 5.678583 AGATGTCATGTGGGTCTATCTTTG 58.321 41.667 0.00 0.00 0.00 2.77
258 259 5.426509 TGAGATGTCATGTGGGTCTATCTTT 59.573 40.000 0.00 0.00 0.00 2.52
276 277 0.107800 CTGGAGCACCACCTGAGATG 60.108 60.000 0.00 0.00 41.77 2.90
299 300 3.478857 ACCGGCGATGAATGGTAAATA 57.521 42.857 9.30 0.00 31.60 1.40
300 301 2.341846 ACCGGCGATGAATGGTAAAT 57.658 45.000 9.30 0.00 31.60 1.40
301 302 2.116827 AACCGGCGATGAATGGTAAA 57.883 45.000 9.30 0.00 33.45 2.01
302 303 2.116827 AAACCGGCGATGAATGGTAA 57.883 45.000 9.30 0.00 33.45 2.85
303 304 2.484065 CCTAAACCGGCGATGAATGGTA 60.484 50.000 9.30 0.00 33.45 3.25
304 305 1.663695 CTAAACCGGCGATGAATGGT 58.336 50.000 9.30 0.00 35.90 3.55
305 306 0.944386 CCTAAACCGGCGATGAATGG 59.056 55.000 9.30 0.00 0.00 3.16
306 307 0.944386 CCCTAAACCGGCGATGAATG 59.056 55.000 9.30 0.00 0.00 2.67
313 314 1.478105 ACTAACTACCCTAAACCGGCG 59.522 52.381 0.00 0.00 0.00 6.46
326 1984 6.272792 CCTCTCCCCTCTAGACATACTAACTA 59.727 46.154 0.00 0.00 0.00 2.24
351 2009 7.500992 TGGTCATTTCTGTAGTCTATTCATCC 58.499 38.462 0.00 0.00 0.00 3.51
353 2011 9.911788 AATTGGTCATTTCTGTAGTCTATTCAT 57.088 29.630 0.00 0.00 0.00 2.57
417 2077 5.049405 CCACCGATATTTTTGAGATGGCTAC 60.049 44.000 0.00 0.00 0.00 3.58
420 2080 3.550842 GCCACCGATATTTTTGAGATGGC 60.551 47.826 0.00 0.00 42.93 4.40
437 2097 1.312371 ATATGCACAACCACGCCACC 61.312 55.000 0.00 0.00 0.00 4.61
441 2101 0.171007 AAGCATATGCACAACCACGC 59.829 50.000 28.62 0.00 45.16 5.34
442 2102 2.223249 GGTAAGCATATGCACAACCACG 60.223 50.000 28.62 0.00 45.16 4.94
488 2148 2.457366 AAAAGGAGTCGTCGCAGAAT 57.543 45.000 0.00 0.00 39.69 2.40
515 2175 5.353111 TGACCATCGTCGCAAAATTATCTA 58.647 37.500 0.00 0.00 42.37 1.98
534 2194 2.749621 CCAAGGTGATAGTGCTTTGACC 59.250 50.000 0.00 0.00 0.00 4.02
541 2201 2.370189 AGGCTATCCAAGGTGATAGTGC 59.630 50.000 9.18 0.00 43.99 4.40
543 2203 3.928754 TGAGGCTATCCAAGGTGATAGT 58.071 45.455 9.18 0.00 43.99 2.12
544 2204 4.963318 TTGAGGCTATCCAAGGTGATAG 57.037 45.455 4.14 4.14 44.62 2.08
545 2205 6.730507 TCATATTGAGGCTATCCAAGGTGATA 59.269 38.462 0.00 0.00 33.74 2.15
600 2260 6.599356 ACACCAACTATACATAGACACACA 57.401 37.500 3.27 0.00 34.50 3.72
601 2261 6.872020 ACAACACCAACTATACATAGACACAC 59.128 38.462 3.27 0.00 34.50 3.82
609 2269 6.049955 ACTAGCACAACACCAACTATACAT 57.950 37.500 0.00 0.00 0.00 2.29
611 2271 7.063074 CACTAACTAGCACAACACCAACTATAC 59.937 40.741 0.00 0.00 0.00 1.47
641 2301 3.492829 GGCTAACTCCAATCGAACCCTAG 60.493 52.174 0.00 0.00 0.00 3.02
649 2309 3.753294 ATACTGGGCTAACTCCAATCG 57.247 47.619 0.00 0.00 33.36 3.34
663 2323 4.082136 GGATAAGGCCGAGAACTATACTGG 60.082 50.000 0.00 0.00 0.00 4.00
666 2326 5.394333 GGATGGATAAGGCCGAGAACTATAC 60.394 48.000 0.00 0.00 0.00 1.47
748 2408 7.984050 CCTCAACATACTCTATTGTCATCAACT 59.016 37.037 0.00 0.00 36.33 3.16
749 2409 7.766278 ACCTCAACATACTCTATTGTCATCAAC 59.234 37.037 0.00 0.00 36.33 3.18
750 2410 7.851228 ACCTCAACATACTCTATTGTCATCAA 58.149 34.615 0.00 0.00 37.98 2.57
751 2411 7.343057 AGACCTCAACATACTCTATTGTCATCA 59.657 37.037 0.00 0.00 0.00 3.07
752 2412 7.721402 AGACCTCAACATACTCTATTGTCATC 58.279 38.462 0.00 0.00 0.00 2.92
753 2413 7.667575 AGACCTCAACATACTCTATTGTCAT 57.332 36.000 0.00 0.00 0.00 3.06
754 2414 7.323420 CAAGACCTCAACATACTCTATTGTCA 58.677 38.462 0.00 0.00 0.00 3.58
755 2415 6.758886 CCAAGACCTCAACATACTCTATTGTC 59.241 42.308 0.00 0.00 0.00 3.18
756 2416 6.213600 ACCAAGACCTCAACATACTCTATTGT 59.786 38.462 0.00 0.00 0.00 2.71
757 2417 6.644347 ACCAAGACCTCAACATACTCTATTG 58.356 40.000 0.00 0.00 0.00 1.90
758 2418 6.440647 TGACCAAGACCTCAACATACTCTATT 59.559 38.462 0.00 0.00 0.00 1.73
759 2419 5.958380 TGACCAAGACCTCAACATACTCTAT 59.042 40.000 0.00 0.00 0.00 1.98
923 2589 1.895798 TCTCTCTGCTTCGTTGGTGAT 59.104 47.619 0.00 0.00 0.00 3.06
927 2593 2.483876 TGTTTCTCTCTGCTTCGTTGG 58.516 47.619 0.00 0.00 0.00 3.77
999 2665 3.066190 CCGAGGCCACGTGTAGGA 61.066 66.667 21.30 0.00 0.00 2.94
1001 2667 4.143333 CCCCGAGGCCACGTGTAG 62.143 72.222 21.30 5.73 0.00 2.74
1076 2742 2.437343 GCTTCCAAGCGTCGACGAG 61.437 63.158 39.74 26.56 42.88 4.18
1077 2743 2.430244 GCTTCCAAGCGTCGACGA 60.430 61.111 39.74 17.32 42.88 4.20
1112 2778 4.478371 CTGGCGCCATGGAGCTCA 62.478 66.667 34.87 28.28 40.71 4.26
1169 2835 3.554692 GCGATGACGAAGGCACGG 61.555 66.667 8.70 0.00 42.66 4.94
1172 2838 1.141019 GTAGGCGATGACGAAGGCA 59.859 57.895 0.00 0.00 42.66 4.75
1309 2975 1.282248 CTTGGTGACCGTGTAGTGCG 61.282 60.000 0.00 0.00 0.00 5.34
1317 2983 1.069668 GTACAGGAACTTGGTGACCGT 59.930 52.381 0.00 0.00 34.60 4.83
1319 2985 1.792006 CGTACAGGAACTTGGTGACC 58.208 55.000 0.00 0.00 34.60 4.02
1436 3102 3.650950 TTGGCCTCCCTCCACAGC 61.651 66.667 3.32 0.00 32.45 4.40
1449 3115 0.258774 ACATACCCCATCCAGTTGGC 59.741 55.000 0.00 0.00 35.29 4.52
1472 3138 4.530857 CCCTCATCCGTCGCCACC 62.531 72.222 0.00 0.00 0.00 4.61
1532 3198 1.497278 CAGTTTCATCACGGTGCCG 59.503 57.895 9.29 9.29 46.03 5.69
1543 3209 4.624024 CGTCGCTTAAATACTCCAGTTTCA 59.376 41.667 0.00 0.00 0.00 2.69
1617 3283 1.664321 CTAGCGTCCTTGTAGGCGGT 61.664 60.000 14.85 14.85 43.76 5.68
1634 3300 0.035820 GAAATCCGTGGTGCACCCTA 60.036 55.000 32.62 13.10 34.29 3.53
1703 3369 5.749109 GTGAAGTAATACCTGATCTTGGACG 59.251 44.000 11.38 0.00 0.00 4.79
1762 3430 8.262601 ACCTCCAAAATAATTTTCCACTTCTT 57.737 30.769 0.00 0.00 0.00 2.52
1817 3490 9.448438 TCAGTGCATATAACTCATACTTTTGTT 57.552 29.630 0.00 0.00 0.00 2.83
1932 3605 9.667107 TGTTTCTACCTTTGACCATCTATTTAG 57.333 33.333 0.00 0.00 0.00 1.85
1968 3641 3.534554 TCTTTATGCATGCATCGACACT 58.465 40.909 35.35 14.64 37.82 3.55
1969 3642 3.950087 TCTTTATGCATGCATCGACAC 57.050 42.857 35.35 0.00 37.82 3.67
1974 3647 6.976349 TGACTCATTTTCTTTATGCATGCATC 59.024 34.615 35.35 17.53 37.82 3.91
1988 3661 8.879759 TCCGTTACAAGATATTGACTCATTTTC 58.120 33.333 7.16 0.00 0.00 2.29
1992 3665 7.327975 TGTTCCGTTACAAGATATTGACTCAT 58.672 34.615 7.16 0.00 0.00 2.90
1998 3671 6.811665 TGTCTCTGTTCCGTTACAAGATATTG 59.188 38.462 0.00 0.00 0.00 1.90
2006 3679 4.139786 AGTACTGTCTCTGTTCCGTTACA 58.860 43.478 0.00 0.00 0.00 2.41
2009 3682 5.979288 ATAAGTACTGTCTCTGTTCCGTT 57.021 39.130 0.00 0.00 0.00 4.44
2051 3724 5.592282 TGACCAAGCAATAAGACTTGTGAAA 59.408 36.000 0.00 0.00 41.36 2.69
2185 3858 1.607801 CGGTGATGCTGACCTCCTCA 61.608 60.000 0.00 0.00 0.00 3.86
2209 3882 4.082523 GCGCCTAGGCTGTGACCA 62.083 66.667 30.55 0.00 39.32 4.02
2278 3951 1.524482 CTTGGAGTAGGCAGGAGGC 59.476 63.158 0.00 0.00 43.74 4.70
2374 4047 1.742411 GCACGAAGATCGGGGAATGAA 60.742 52.381 4.00 0.00 44.81 2.57
2389 4062 0.541063 TCCTCACACTTAGGGCACGA 60.541 55.000 0.00 0.00 34.66 4.35
2392 4065 0.320374 CGTTCCTCACACTTAGGGCA 59.680 55.000 0.00 0.00 34.66 5.36
2518 4191 4.082845 TCCAAAACCTGAACAAGTCAACA 58.917 39.130 0.00 0.00 35.22 3.33
2521 4194 3.699038 CCTTCCAAAACCTGAACAAGTCA 59.301 43.478 0.00 0.00 34.17 3.41
2576 4249 1.654023 GCACCTTGATACCCGGCAAC 61.654 60.000 0.00 0.00 0.00 4.17
2626 4299 4.751600 CACTTGTTCAGAAGCACTACATCA 59.248 41.667 0.00 0.00 0.00 3.07
2629 4302 3.466836 CCACTTGTTCAGAAGCACTACA 58.533 45.455 0.00 0.00 0.00 2.74
2634 4307 0.823356 GGCCCACTTGTTCAGAAGCA 60.823 55.000 0.00 0.00 0.00 3.91
2635 4308 1.856265 CGGCCCACTTGTTCAGAAGC 61.856 60.000 0.00 0.00 0.00 3.86
2653 4326 1.005340 GCTCATCCTTCAGCAAGTCG 58.995 55.000 0.00 0.00 35.56 4.18
2728 4401 1.281867 TCGAATTTCCAGTGGCCATCT 59.718 47.619 9.72 5.20 0.00 2.90
2761 4434 7.856357 AGTGAAACCTAACCACTTAATTGGTCA 60.856 37.037 17.03 2.80 44.23 4.02
2806 4480 2.036089 GAGGCCGTGGTTATCCTCTAAG 59.964 54.545 0.00 0.00 41.35 2.18
2807 4481 2.037144 GAGGCCGTGGTTATCCTCTAA 58.963 52.381 0.00 0.00 41.35 2.10
2810 4484 1.340568 GTAGAGGCCGTGGTTATCCTC 59.659 57.143 0.00 0.00 44.09 3.71
2890 4582 6.620678 TGTTGTATAAGCAGATCTTTTTGGC 58.379 36.000 0.00 0.00 36.25 4.52
2934 4626 6.510157 CGTGAAGCTGGTCAAATATGTATGAC 60.510 42.308 7.64 7.64 44.07 3.06
2966 4664 3.460103 GTTGGTGGTACAGTTTTCGAGA 58.540 45.455 0.00 0.00 41.80 4.04
2970 4668 2.940158 AGGGTTGGTGGTACAGTTTTC 58.060 47.619 0.00 0.00 41.80 2.29
2974 4672 2.910544 TCATAGGGTTGGTGGTACAGT 58.089 47.619 0.00 0.00 41.80 3.55
2975 4673 4.199310 CAATCATAGGGTTGGTGGTACAG 58.801 47.826 0.00 0.00 41.80 2.74
2977 4675 4.230745 ACAATCATAGGGTTGGTGGTAC 57.769 45.455 5.24 0.00 0.00 3.34
3012 4710 1.965930 GCCACATGTTGCTCGACCA 60.966 57.895 14.37 0.00 0.00 4.02
3034 4732 1.615107 CGGAGTCTCGTGCCGTTTTC 61.615 60.000 0.00 0.00 40.17 2.29
3035 4733 1.663702 CGGAGTCTCGTGCCGTTTT 60.664 57.895 0.00 0.00 40.17 2.43
3046 4744 6.097915 TCTTTAGATGTTTTCACGGAGTCT 57.902 37.500 0.00 0.00 41.61 3.24
3053 4751 7.807680 ACGATTCCTTCTTTAGATGTTTTCAC 58.192 34.615 0.00 0.00 0.00 3.18
3078 4776 0.384309 CTACATTAGCGTGCGGAGGA 59.616 55.000 0.00 0.00 0.00 3.71
3080 4778 1.215655 GCCTACATTAGCGTGCGGAG 61.216 60.000 0.00 0.00 0.00 4.63
3087 4785 3.165058 TCAGAACAGCCTACATTAGCG 57.835 47.619 0.00 0.00 0.00 4.26
3092 4790 4.225942 TCCTTTGATCAGAACAGCCTACAT 59.774 41.667 0.00 0.00 0.00 2.29
3093 4791 3.582647 TCCTTTGATCAGAACAGCCTACA 59.417 43.478 0.00 0.00 0.00 2.74
3105 4803 3.153130 TCGCCATGTTTTCCTTTGATCA 58.847 40.909 0.00 0.00 0.00 2.92
3174 4872 6.381481 ATGATAACATCGACATTTGCATGT 57.619 33.333 0.00 0.00 38.09 3.21
3175 4873 8.448615 AGATATGATAACATCGACATTTGCATG 58.551 33.333 0.00 0.00 37.87 4.06
3176 4874 8.557592 AGATATGATAACATCGACATTTGCAT 57.442 30.769 0.00 0.00 37.87 3.96
3234 4933 0.951040 GGAAGAGACACCAACTGGCG 60.951 60.000 0.00 0.00 39.32 5.69
3241 4940 5.560722 TTAACATCAAGGAAGAGACACCA 57.439 39.130 0.00 0.00 0.00 4.17
3242 4941 8.616076 CATAATTAACATCAAGGAAGAGACACC 58.384 37.037 0.00 0.00 0.00 4.16
3286 4985 8.792633 CAAAACAATCTAGGAAATGTGACCTTA 58.207 33.333 0.00 0.00 37.68 2.69
3299 4998 9.640952 TCTTTATATTCCCCAAAACAATCTAGG 57.359 33.333 0.00 0.00 0.00 3.02
3314 5013 4.083802 GCGTCCACTGCATCTTTATATTCC 60.084 45.833 0.00 0.00 0.00 3.01
3352 5051 1.227823 TGTGTTCTTGGCCTGGTCG 60.228 57.895 3.32 0.00 0.00 4.79
3381 5088 6.071108 AGGATTATTATAGCAGCACGATGAGT 60.071 38.462 0.00 0.00 0.00 3.41
3382 5089 6.336566 AGGATTATTATAGCAGCACGATGAG 58.663 40.000 0.00 0.00 0.00 2.90
3387 5094 4.324669 CACGAGGATTATTATAGCAGCACG 59.675 45.833 0.00 0.00 0.00 5.34
3390 5097 4.245660 TGCACGAGGATTATTATAGCAGC 58.754 43.478 0.00 0.00 0.00 5.25
3391 5098 5.714047 TCTGCACGAGGATTATTATAGCAG 58.286 41.667 0.00 0.00 45.96 4.24
3392 5099 5.714047 CTCTGCACGAGGATTATTATAGCA 58.286 41.667 0.00 0.00 36.06 3.49
3393 5100 4.564769 GCTCTGCACGAGGATTATTATAGC 59.435 45.833 12.98 0.00 40.25 2.97
3394 5101 5.714047 TGCTCTGCACGAGGATTATTATAG 58.286 41.667 12.98 0.00 40.25 1.31
3395 5102 5.722021 TGCTCTGCACGAGGATTATTATA 57.278 39.130 12.98 0.00 40.25 0.98
3396 5103 4.607293 TGCTCTGCACGAGGATTATTAT 57.393 40.909 12.98 0.00 40.25 1.28
3397 5104 4.371786 CTTGCTCTGCACGAGGATTATTA 58.628 43.478 12.98 0.00 40.00 0.98
3398 5105 2.988010 TGCTCTGCACGAGGATTATT 57.012 45.000 12.98 0.00 40.25 1.40
3399 5106 2.484417 CCTTGCTCTGCACGAGGATTAT 60.484 50.000 12.98 0.00 38.44 1.28
3400 5107 1.134699 CCTTGCTCTGCACGAGGATTA 60.135 52.381 12.98 0.00 38.44 1.75
3401 5108 0.392193 CCTTGCTCTGCACGAGGATT 60.392 55.000 12.98 0.00 38.44 3.01
3402 5109 1.220206 CCTTGCTCTGCACGAGGAT 59.780 57.895 12.98 0.00 38.44 3.24
3403 5110 2.659016 CCTTGCTCTGCACGAGGA 59.341 61.111 12.98 8.70 38.44 3.71
3404 5111 3.123620 GCCTTGCTCTGCACGAGG 61.124 66.667 12.98 9.33 38.98 4.63
3405 5112 1.703438 GATGCCTTGCTCTGCACGAG 61.703 60.000 8.34 8.34 40.88 4.18
3406 5113 1.742880 GATGCCTTGCTCTGCACGA 60.743 57.895 0.00 0.00 40.88 4.35
3407 5114 1.579964 TTGATGCCTTGCTCTGCACG 61.580 55.000 0.00 0.00 40.88 5.34
3408 5115 0.599558 TTTGATGCCTTGCTCTGCAC 59.400 50.000 0.00 0.00 40.88 4.57
3452 5159 5.398169 CAAGTATTTTATGTTGCGCCAAGA 58.602 37.500 4.18 0.00 0.00 3.02
3509 5216 9.656040 TTCGACCTCTCATCTCTTACTATATAC 57.344 37.037 0.00 0.00 0.00 1.47
3517 5224 3.964411 TGGTTCGACCTCTCATCTCTTA 58.036 45.455 5.77 0.00 39.58 2.10
3530 5237 9.924650 ACATAGGAATAATATAGTTGGTTCGAC 57.075 33.333 0.00 0.00 0.00 4.20
3559 5266 9.458727 ACAAGTTGGATCATATATGAATGGATC 57.541 33.333 19.03 11.34 40.69 3.36
3560 5267 9.818270 AACAAGTTGGATCATATATGAATGGAT 57.182 29.630 19.03 2.48 40.69 3.41
3581 5288 3.508793 TGTCTTACGGAGGGAGTAACAAG 59.491 47.826 0.00 0.00 31.59 3.16
3602 5309 6.536582 ACAGTTCCTGATCGAAATTACTCATG 59.463 38.462 0.00 0.00 35.18 3.07
3623 5330 1.295423 GGGTATCACGTGGCACAGT 59.705 57.895 19.09 13.40 41.80 3.55
3624 5331 0.321210 TTGGGTATCACGTGGCACAG 60.321 55.000 19.09 12.74 41.80 3.66
3640 5347 1.403780 GCGTATATAGGAGCCCGTTGG 60.404 57.143 6.62 0.00 0.00 3.77
3644 5351 1.736032 GCAAGCGTATATAGGAGCCCG 60.736 57.143 6.62 0.00 0.00 6.13
3652 5359 9.515999 GCGATAGTCTGCTAGCAAGCGTATATA 62.516 44.444 21.57 7.33 46.04 0.86
3653 5360 8.799021 GCGATAGTCTGCTAGCAAGCGTATAT 62.799 46.154 21.57 12.99 46.04 0.86
3654 5361 7.590749 GCGATAGTCTGCTAGCAAGCGTATA 62.591 48.000 21.57 9.50 46.04 1.47
3655 5362 6.898074 GCGATAGTCTGCTAGCAAGCGTAT 62.898 50.000 21.57 14.59 46.04 3.06
3716 5423 2.507102 CTGCTGCTGGTACGTCCG 60.507 66.667 0.00 0.00 39.52 4.79
3718 5425 1.807573 GCTCTGCTGCTGGTACGTC 60.808 63.158 6.69 0.00 0.00 4.34
3741 5448 1.734137 CGATGGACCTCGATCGGTT 59.266 57.895 16.41 0.00 46.22 4.44
3748 5459 1.860950 CAATTACAGCGATGGACCTCG 59.139 52.381 5.32 8.46 41.54 4.63
3749 5460 2.213499 CCAATTACAGCGATGGACCTC 58.787 52.381 5.32 0.00 34.82 3.85
3762 5473 3.262420 ACTCGATCAGTGTGCCAATTAC 58.738 45.455 0.00 0.00 32.26 1.89
3772 5483 4.101942 GAGTAGCAAGAACTCGATCAGTG 58.898 47.826 0.00 0.00 34.56 3.66
3778 5489 4.070009 TGTGTAGAGTAGCAAGAACTCGA 58.930 43.478 0.00 0.00 46.46 4.04
3779 5490 4.154375 TCTGTGTAGAGTAGCAAGAACTCG 59.846 45.833 0.00 0.00 46.46 4.18
3780 5491 5.630661 TCTGTGTAGAGTAGCAAGAACTC 57.369 43.478 0.00 0.00 43.06 3.01
3781 5492 5.105554 CCATCTGTGTAGAGTAGCAAGAACT 60.106 44.000 0.00 0.00 36.14 3.01
3782 5493 5.105752 CCATCTGTGTAGAGTAGCAAGAAC 58.894 45.833 0.00 0.00 36.14 3.01
3783 5494 4.382040 GCCATCTGTGTAGAGTAGCAAGAA 60.382 45.833 0.00 0.00 36.14 2.52
3784 5495 3.131223 GCCATCTGTGTAGAGTAGCAAGA 59.869 47.826 0.00 0.00 36.14 3.02
3785 5496 3.452474 GCCATCTGTGTAGAGTAGCAAG 58.548 50.000 0.00 0.00 36.14 4.01
3786 5497 2.159240 CGCCATCTGTGTAGAGTAGCAA 60.159 50.000 0.00 0.00 36.14 3.91
3787 5498 1.405463 CGCCATCTGTGTAGAGTAGCA 59.595 52.381 0.00 0.00 36.14 3.49
3788 5499 1.676529 TCGCCATCTGTGTAGAGTAGC 59.323 52.381 0.00 0.00 36.14 3.58
3789 5500 2.683362 TGTCGCCATCTGTGTAGAGTAG 59.317 50.000 0.00 0.00 36.14 2.57
3790 5501 2.683362 CTGTCGCCATCTGTGTAGAGTA 59.317 50.000 0.00 0.00 36.14 2.59
3791 5502 1.474478 CTGTCGCCATCTGTGTAGAGT 59.526 52.381 0.00 0.00 36.14 3.24
3792 5503 1.202348 CCTGTCGCCATCTGTGTAGAG 60.202 57.143 0.00 0.00 36.14 2.43
3793 5504 0.817654 CCTGTCGCCATCTGTGTAGA 59.182 55.000 0.00 0.00 37.35 2.59
3794 5505 0.807667 GCCTGTCGCCATCTGTGTAG 60.808 60.000 0.00 0.00 0.00 2.74
3795 5506 1.218047 GCCTGTCGCCATCTGTGTA 59.782 57.895 0.00 0.00 0.00 2.90
3796 5507 2.046892 GCCTGTCGCCATCTGTGT 60.047 61.111 0.00 0.00 0.00 3.72
3797 5508 2.104859 CAGCCTGTCGCCATCTGTG 61.105 63.158 0.00 0.00 38.78 3.66
3798 5509 2.267006 CAGCCTGTCGCCATCTGT 59.733 61.111 0.00 0.00 38.78 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.