Multiple sequence alignment - TraesCS4A01G300600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G300600 chr4A 100.000 3651 0 0 1 3651 598235284 598238934 0.000000e+00 6743.0
1 TraesCS4A01G300600 chr4A 97.059 238 7 0 27 264 157871385 157871622 5.680000e-108 401.0
2 TraesCS4A01G300600 chr1B 88.699 2575 164 42 263 2761 656423941 656421418 0.000000e+00 3025.0
3 TraesCS4A01G300600 chr1B 91.288 1825 120 19 1848 3651 598446729 598444923 0.000000e+00 2453.0
4 TraesCS4A01G300600 chr1B 93.289 149 8 2 2793 2940 656421448 656421301 6.140000e-53 219.0
5 TraesCS4A01G300600 chr1B 91.729 133 8 1 2926 3058 656419660 656419531 8.050000e-42 182.0
6 TraesCS4A01G300600 chr1D 86.556 543 33 13 263 768 472291576 472291037 2.460000e-156 562.0
7 TraesCS4A01G300600 chr1D 85.366 123 17 1 288 409 329506643 329506521 3.830000e-25 126.0
8 TraesCS4A01G300600 chr5A 97.899 238 5 0 27 264 50027055 50026818 2.620000e-111 412.0
9 TraesCS4A01G300600 chr5A 97.059 238 7 0 27 264 297970314 297970077 5.680000e-108 401.0
10 TraesCS4A01G300600 chr5A 97.059 238 7 0 27 264 658563905 658563668 5.680000e-108 401.0
11 TraesCS4A01G300600 chr1A 97.899 238 5 0 27 264 326117091 326117328 2.620000e-111 412.0
12 TraesCS4A01G300600 chr1A 97.468 237 6 0 27 263 245556032 245555796 4.390000e-109 405.0
13 TraesCS4A01G300600 chr1A 97.046 237 7 0 27 263 110275111 110275347 2.040000e-107 399.0
14 TraesCS4A01G300600 chr2A 97.479 238 6 0 27 264 158012334 158012097 1.220000e-109 407.0
15 TraesCS4A01G300600 chr2A 97.059 238 7 0 27 264 673455874 673456111 5.680000e-108 401.0
16 TraesCS4A01G300600 chr2A 83.193 119 20 0 288 406 180363994 180364112 3.850000e-20 110.0
17 TraesCS4A01G300600 chr2A 93.333 45 3 0 1973 2017 729527693 729527737 2.350000e-07 67.6
18 TraesCS4A01G300600 chr2A 93.333 45 3 0 1973 2017 729562537 729562581 2.350000e-07 67.6
19 TraesCS4A01G300600 chr3B 80.963 436 43 16 3055 3490 324234228 324233833 3.540000e-80 309.0
20 TraesCS4A01G300600 chr2B 78.189 541 44 27 3055 3576 357885191 357885676 9.980000e-71 278.0
21 TraesCS4A01G300600 chr2B 81.057 227 21 14 3370 3578 295670429 295670207 1.050000e-35 161.0
22 TraesCS4A01G300600 chr2B 83.471 121 19 1 288 407 84743875 84743755 1.070000e-20 111.0
23 TraesCS4A01G300600 chr2B 85.333 75 10 1 3074 3148 128028541 128028614 3.910000e-10 76.8
24 TraesCS4A01G300600 chr2B 93.333 45 3 0 1973 2017 723302159 723302203 2.350000e-07 67.6
25 TraesCS4A01G300600 chr2D 75.229 654 125 24 1973 2611 641190114 641190745 3.590000e-70 276.0
26 TraesCS4A01G300600 chr2D 93.333 45 3 0 1973 2017 595439245 595439289 2.350000e-07 67.6
27 TraesCS4A01G300600 chr2D 100.000 29 0 0 1 29 482572173 482572201 2.000000e-03 54.7
28 TraesCS4A01G300600 chr2D 100.000 29 0 0 1 29 482578400 482578428 2.000000e-03 54.7
29 TraesCS4A01G300600 chr4D 82.143 140 25 0 263 402 17069903 17070042 1.780000e-23 121.0
30 TraesCS4A01G300600 chr4D 100.000 29 0 0 1 29 342051158 342051186 2.000000e-03 54.7
31 TraesCS4A01G300600 chr5D 81.208 149 14 6 639 776 416873111 416873256 1.390000e-19 108.0
32 TraesCS4A01G300600 chr5D 100.000 48 0 0 570 617 416873074 416873121 5.020000e-14 89.8
33 TraesCS4A01G300600 chr5D 100.000 29 0 0 1 29 506819601 506819629 2.000000e-03 54.7
34 TraesCS4A01G300600 chr5B 82.787 122 19 2 288 407 692128068 692128189 1.390000e-19 108.0
35 TraesCS4A01G300600 chr5B 85.333 75 10 1 3074 3148 536381424 536381497 3.910000e-10 76.8
36 TraesCS4A01G300600 chr6A 79.730 148 28 2 263 409 158306691 158306545 4.990000e-19 106.0
37 TraesCS4A01G300600 chr6A 80.000 95 17 2 1973 2066 586848130 586848223 6.540000e-08 69.4
38 TraesCS4A01G300600 chr4B 82.787 122 18 3 290 409 653119878 653119758 4.990000e-19 106.0
39 TraesCS4A01G300600 chrUn 100.000 29 0 0 1 29 291904128 291904156 2.000000e-03 54.7
40 TraesCS4A01G300600 chr7D 100.000 29 0 0 1 29 608956657 608956685 2.000000e-03 54.7
41 TraesCS4A01G300600 chr6B 100.000 29 0 0 1 29 34832164 34832136 2.000000e-03 54.7
42 TraesCS4A01G300600 chr6B 100.000 29 0 0 1 29 34838970 34838942 2.000000e-03 54.7
43 TraesCS4A01G300600 chr3D 100.000 29 0 0 1 29 229936965 229936937 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G300600 chr4A 598235284 598238934 3650 False 6743 6743 100.000 1 3651 1 chr4A.!!$F2 3650
1 TraesCS4A01G300600 chr1B 598444923 598446729 1806 True 2453 2453 91.288 1848 3651 1 chr1B.!!$R1 1803
2 TraesCS4A01G300600 chr1B 656419531 656423941 4410 True 1142 3025 91.239 263 3058 3 chr1B.!!$R2 2795
3 TraesCS4A01G300600 chr1D 472291037 472291576 539 True 562 562 86.556 263 768 1 chr1D.!!$R2 505
4 TraesCS4A01G300600 chr2D 641190114 641190745 631 False 276 276 75.229 1973 2611 1 chr2D.!!$F4 638

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
148 149 0.038892 ACGACTACATCAACCGCGTT 60.039 50.0 4.92 0.0 0.00 4.84 F
1065 1121 0.037697 TGGACATACGCATATCGGCC 60.038 55.0 0.00 0.0 43.86 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1249 1305 0.107312 AGCTCCATGTGCTGATCACC 60.107 55.0 9.27 0.0 45.03 4.02 R
2759 2837 0.033504 GAACAGACCGGACAGAAGCA 59.966 55.0 9.46 0.0 0.00 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.120054 GACTAGGAAAGAGGAGTCCTACT 57.880 47.826 12.99 8.47 42.68 2.57
23 24 5.120054 ACTAGGAAAGAGGAGTCCTACTC 57.880 47.826 12.99 8.79 42.68 2.59
34 35 4.379339 GAGTCCTACTCCTACTTTGCTG 57.621 50.000 0.00 0.00 39.28 4.41
35 36 3.100671 AGTCCTACTCCTACTTTGCTGG 58.899 50.000 0.00 0.00 0.00 4.85
36 37 3.097614 GTCCTACTCCTACTTTGCTGGA 58.902 50.000 0.00 0.00 0.00 3.86
37 38 3.707102 GTCCTACTCCTACTTTGCTGGAT 59.293 47.826 0.00 0.00 0.00 3.41
38 39 3.961408 TCCTACTCCTACTTTGCTGGATC 59.039 47.826 0.00 0.00 0.00 3.36
39 40 2.969628 ACTCCTACTTTGCTGGATCG 57.030 50.000 0.00 0.00 0.00 3.69
40 41 1.482593 ACTCCTACTTTGCTGGATCGG 59.517 52.381 0.00 0.00 0.00 4.18
41 42 1.757118 CTCCTACTTTGCTGGATCGGA 59.243 52.381 0.00 0.00 0.00 4.55
42 43 1.757118 TCCTACTTTGCTGGATCGGAG 59.243 52.381 0.00 0.00 0.00 4.63
43 44 1.482593 CCTACTTTGCTGGATCGGAGT 59.517 52.381 0.00 0.00 0.00 3.85
44 45 2.482142 CCTACTTTGCTGGATCGGAGTC 60.482 54.545 0.00 0.00 0.00 3.36
45 46 0.250513 ACTTTGCTGGATCGGAGTCC 59.749 55.000 0.00 0.00 38.81 3.85
46 47 0.250234 CTTTGCTGGATCGGAGTCCA 59.750 55.000 10.49 8.30 45.78 4.02
50 51 3.105785 TGGATCGGAGTCCAGGGA 58.894 61.111 10.49 0.00 43.20 4.20
51 52 1.626451 TGGATCGGAGTCCAGGGAT 59.374 57.895 10.49 3.75 43.20 3.85
52 53 0.470080 TGGATCGGAGTCCAGGGATC 60.470 60.000 10.49 12.73 43.20 3.36
53 54 1.528292 GGATCGGAGTCCAGGGATCG 61.528 65.000 10.49 0.00 38.20 3.69
54 55 2.148558 GATCGGAGTCCAGGGATCGC 62.149 65.000 10.49 0.54 0.00 4.58
55 56 3.917760 CGGAGTCCAGGGATCGCC 61.918 72.222 10.49 0.00 0.00 5.54
56 57 2.764128 GGAGTCCAGGGATCGCCA 60.764 66.667 3.60 0.00 35.15 5.69
57 58 2.143419 GGAGTCCAGGGATCGCCAT 61.143 63.158 3.60 0.00 35.15 4.40
58 59 1.369321 GAGTCCAGGGATCGCCATC 59.631 63.158 6.09 0.00 35.15 3.51
59 60 2.029666 GTCCAGGGATCGCCATCG 59.970 66.667 6.09 0.00 35.15 3.84
68 69 4.395080 TCGCCATCGAGCTAAACG 57.605 55.556 0.00 0.00 40.21 3.60
69 70 1.509463 TCGCCATCGAGCTAAACGT 59.491 52.632 0.00 0.00 40.21 3.99
70 71 0.800683 TCGCCATCGAGCTAAACGTG 60.801 55.000 0.00 0.00 40.21 4.49
71 72 1.076533 CGCCATCGAGCTAAACGTGT 61.077 55.000 0.00 0.00 38.10 4.49
72 73 0.370273 GCCATCGAGCTAAACGTGTG 59.630 55.000 0.00 0.00 0.00 3.82
73 74 0.370273 CCATCGAGCTAAACGTGTGC 59.630 55.000 0.00 0.00 0.00 4.57
74 75 1.350193 CATCGAGCTAAACGTGTGCT 58.650 50.000 9.46 9.46 40.02 4.40
75 76 2.526077 CATCGAGCTAAACGTGTGCTA 58.474 47.619 9.63 0.00 37.16 3.49
76 77 2.257974 TCGAGCTAAACGTGTGCTAG 57.742 50.000 9.63 9.87 37.16 3.42
77 78 1.808343 TCGAGCTAAACGTGTGCTAGA 59.192 47.619 13.37 13.37 37.16 2.43
78 79 2.227149 TCGAGCTAAACGTGTGCTAGAA 59.773 45.455 14.45 0.00 36.00 2.10
79 80 2.341760 CGAGCTAAACGTGTGCTAGAAC 59.658 50.000 9.63 0.00 37.16 3.01
80 81 3.576648 GAGCTAAACGTGTGCTAGAACT 58.423 45.455 1.64 0.00 37.16 3.01
81 82 3.576648 AGCTAAACGTGTGCTAGAACTC 58.423 45.455 1.64 0.00 35.05 3.01
82 83 2.341760 GCTAAACGTGTGCTAGAACTCG 59.658 50.000 21.00 21.00 41.49 4.18
83 84 1.779569 AAACGTGTGCTAGAACTCGG 58.220 50.000 24.99 10.58 40.39 4.63
84 85 0.956633 AACGTGTGCTAGAACTCGGA 59.043 50.000 24.99 0.00 40.39 4.55
85 86 0.522180 ACGTGTGCTAGAACTCGGAG 59.478 55.000 24.99 2.83 40.39 4.63
86 87 0.179161 CGTGTGCTAGAACTCGGAGG 60.179 60.000 16.08 0.00 34.36 4.30
87 88 0.889306 GTGTGCTAGAACTCGGAGGT 59.111 55.000 10.23 1.51 0.00 3.85
88 89 0.888619 TGTGCTAGAACTCGGAGGTG 59.111 55.000 10.23 0.00 0.00 4.00
89 90 0.458716 GTGCTAGAACTCGGAGGTGC 60.459 60.000 10.23 3.39 0.00 5.01
90 91 1.142097 GCTAGAACTCGGAGGTGCC 59.858 63.158 10.23 0.00 0.00 5.01
99 100 2.943653 GGAGGTGCCGTTGTTTCG 59.056 61.111 0.00 0.00 0.00 3.46
106 107 4.607024 CCGTTGTTTCGGTGCTTG 57.393 55.556 0.00 0.00 44.77 4.01
107 108 2.018544 CCGTTGTTTCGGTGCTTGA 58.981 52.632 0.00 0.00 44.77 3.02
108 109 0.591170 CCGTTGTTTCGGTGCTTGAT 59.409 50.000 0.00 0.00 44.77 2.57
109 110 1.399727 CCGTTGTTTCGGTGCTTGATC 60.400 52.381 0.00 0.00 44.77 2.92
110 111 1.721489 CGTTGTTTCGGTGCTTGATCG 60.721 52.381 0.00 0.00 0.00 3.69
111 112 0.871722 TTGTTTCGGTGCTTGATCGG 59.128 50.000 0.00 0.00 0.00 4.18
112 113 0.250124 TGTTTCGGTGCTTGATCGGT 60.250 50.000 0.00 0.00 0.00 4.69
113 114 0.442699 GTTTCGGTGCTTGATCGGTC 59.557 55.000 0.00 0.00 0.00 4.79
114 115 1.011968 TTTCGGTGCTTGATCGGTCG 61.012 55.000 0.00 0.00 0.00 4.79
115 116 2.829043 TTCGGTGCTTGATCGGTCGG 62.829 60.000 0.00 0.00 0.00 4.79
116 117 2.511600 GGTGCTTGATCGGTCGGG 60.512 66.667 0.00 0.00 0.00 5.14
117 118 3.195698 GTGCTTGATCGGTCGGGC 61.196 66.667 5.85 5.85 0.00 6.13
118 119 4.467084 TGCTTGATCGGTCGGGCC 62.467 66.667 9.60 0.00 0.00 5.80
128 129 4.353437 GTCGGGCCGTGAAGACGT 62.353 66.667 27.32 0.00 44.54 4.34
129 130 2.672651 TCGGGCCGTGAAGACGTA 60.673 61.111 27.32 0.00 44.54 3.57
130 131 2.505557 CGGGCCGTGAAGACGTAC 60.506 66.667 19.97 0.00 44.54 3.67
131 132 2.505557 GGGCCGTGAAGACGTACG 60.506 66.667 15.01 15.01 44.54 3.67
132 133 2.562912 GGCCGTGAAGACGTACGA 59.437 61.111 24.41 0.00 44.54 3.43
133 134 1.799121 GGCCGTGAAGACGTACGAC 60.799 63.158 24.41 16.77 44.54 4.34
134 135 1.208614 GCCGTGAAGACGTACGACT 59.791 57.895 24.41 19.11 44.54 4.18
135 136 0.443869 GCCGTGAAGACGTACGACTA 59.556 55.000 24.41 3.99 44.54 2.59
136 137 1.788344 GCCGTGAAGACGTACGACTAC 60.788 57.143 24.41 15.53 44.54 2.73
137 138 1.460743 CCGTGAAGACGTACGACTACA 59.539 52.381 24.41 13.28 44.54 2.74
138 139 2.094894 CCGTGAAGACGTACGACTACAT 59.905 50.000 24.41 6.17 44.54 2.29
139 140 3.340552 CGTGAAGACGTACGACTACATC 58.659 50.000 24.41 15.62 42.54 3.06
140 141 3.181527 CGTGAAGACGTACGACTACATCA 60.182 47.826 24.41 18.00 42.54 3.07
141 142 4.667415 CGTGAAGACGTACGACTACATCAA 60.667 45.833 24.41 4.49 42.54 2.57
142 143 4.552660 GTGAAGACGTACGACTACATCAAC 59.447 45.833 24.41 11.90 0.00 3.18
143 144 3.754188 AGACGTACGACTACATCAACC 57.246 47.619 24.41 0.00 0.00 3.77
144 145 2.094894 AGACGTACGACTACATCAACCG 59.905 50.000 24.41 0.00 0.00 4.44
145 146 1.186030 CGTACGACTACATCAACCGC 58.814 55.000 10.44 0.00 0.00 5.68
146 147 1.186030 GTACGACTACATCAACCGCG 58.814 55.000 0.00 0.00 0.00 6.46
147 148 0.804364 TACGACTACATCAACCGCGT 59.196 50.000 4.92 0.00 0.00 6.01
148 149 0.038892 ACGACTACATCAACCGCGTT 60.039 50.000 4.92 0.00 0.00 4.84
149 150 0.365523 CGACTACATCAACCGCGTTG 59.634 55.000 4.92 10.14 43.99 4.10
150 151 1.425412 GACTACATCAACCGCGTTGT 58.575 50.000 16.97 9.99 43.23 3.32
151 152 1.126113 GACTACATCAACCGCGTTGTG 59.874 52.381 16.97 15.92 43.23 3.33
152 153 0.179225 CTACATCAACCGCGTTGTGC 60.179 55.000 16.97 0.00 43.23 4.57
153 154 0.601576 TACATCAACCGCGTTGTGCT 60.602 50.000 16.97 6.88 43.23 4.40
154 155 0.601576 ACATCAACCGCGTTGTGCTA 60.602 50.000 16.97 3.28 43.23 3.49
155 156 0.515127 CATCAACCGCGTTGTGCTAA 59.485 50.000 16.97 2.99 43.23 3.09
156 157 0.515564 ATCAACCGCGTTGTGCTAAC 59.484 50.000 16.97 0.00 43.23 2.34
157 158 1.438059 CAACCGCGTTGTGCTAACG 60.438 57.895 18.25 18.25 45.56 3.18
163 164 1.129809 CGTTGTGCTAACGCTTCCG 59.870 57.895 12.46 0.00 36.82 4.30
164 165 1.154469 GTTGTGCTAACGCTTCCGC 60.154 57.895 0.00 0.00 38.22 5.54
165 166 1.301401 TTGTGCTAACGCTTCCGCT 60.301 52.632 0.00 0.00 38.22 5.52
166 167 0.882927 TTGTGCTAACGCTTCCGCTT 60.883 50.000 0.00 0.00 38.22 4.68
167 168 1.289109 TGTGCTAACGCTTCCGCTTC 61.289 55.000 0.00 0.00 38.22 3.86
168 169 1.740296 TGCTAACGCTTCCGCTTCC 60.740 57.895 0.00 0.00 38.22 3.46
169 170 2.799540 GCTAACGCTTCCGCTTCCG 61.800 63.158 0.00 0.00 38.22 4.30
193 194 4.910195 TCTACGAGGGTAAGTAGACAACA 58.090 43.478 1.66 0.00 42.86 3.33
194 195 3.930634 ACGAGGGTAAGTAGACAACAC 57.069 47.619 0.00 0.00 0.00 3.32
195 196 3.494332 ACGAGGGTAAGTAGACAACACT 58.506 45.455 0.00 0.00 0.00 3.55
196 197 3.505293 ACGAGGGTAAGTAGACAACACTC 59.495 47.826 7.16 7.16 39.74 3.51
197 198 3.757493 CGAGGGTAAGTAGACAACACTCT 59.243 47.826 12.75 0.00 40.73 3.24
198 199 4.142643 CGAGGGTAAGTAGACAACACTCTC 60.143 50.000 12.75 6.88 40.73 3.20
199 200 4.087907 AGGGTAAGTAGACAACACTCTCC 58.912 47.826 0.00 0.00 0.00 3.71
200 201 3.195182 GGGTAAGTAGACAACACTCTCCC 59.805 52.174 0.00 0.00 34.22 4.30
201 202 3.195182 GGTAAGTAGACAACACTCTCCCC 59.805 52.174 0.00 0.00 0.00 4.81
202 203 3.261818 AAGTAGACAACACTCTCCCCT 57.738 47.619 0.00 0.00 0.00 4.79
203 204 2.810164 AGTAGACAACACTCTCCCCTC 58.190 52.381 0.00 0.00 0.00 4.30
204 205 2.380590 AGTAGACAACACTCTCCCCTCT 59.619 50.000 0.00 0.00 0.00 3.69
205 206 1.931635 AGACAACACTCTCCCCTCTC 58.068 55.000 0.00 0.00 0.00 3.20
206 207 0.528470 GACAACACTCTCCCCTCTCG 59.472 60.000 0.00 0.00 0.00 4.04
207 208 0.178958 ACAACACTCTCCCCTCTCGT 60.179 55.000 0.00 0.00 0.00 4.18
208 209 0.969894 CAACACTCTCCCCTCTCGTT 59.030 55.000 0.00 0.00 0.00 3.85
209 210 0.969894 AACACTCTCCCCTCTCGTTG 59.030 55.000 0.00 0.00 0.00 4.10
210 211 1.216710 CACTCTCCCCTCTCGTTGC 59.783 63.158 0.00 0.00 0.00 4.17
211 212 1.077625 ACTCTCCCCTCTCGTTGCT 59.922 57.895 0.00 0.00 0.00 3.91
212 213 0.331954 ACTCTCCCCTCTCGTTGCTA 59.668 55.000 0.00 0.00 0.00 3.49
213 214 1.063567 ACTCTCCCCTCTCGTTGCTAT 60.064 52.381 0.00 0.00 0.00 2.97
214 215 1.339610 CTCTCCCCTCTCGTTGCTATG 59.660 57.143 0.00 0.00 0.00 2.23
215 216 0.249657 CTCCCCTCTCGTTGCTATGC 60.250 60.000 0.00 0.00 0.00 3.14
216 217 0.975556 TCCCCTCTCGTTGCTATGCA 60.976 55.000 0.00 0.00 36.47 3.96
217 218 0.107456 CCCCTCTCGTTGCTATGCAT 59.893 55.000 3.79 3.79 38.76 3.96
218 219 1.506493 CCCTCTCGTTGCTATGCATC 58.494 55.000 0.19 0.00 38.76 3.91
219 220 1.202568 CCCTCTCGTTGCTATGCATCA 60.203 52.381 0.19 0.00 38.76 3.07
220 221 1.863454 CCTCTCGTTGCTATGCATCAC 59.137 52.381 0.19 0.00 38.76 3.06
221 222 1.863454 CTCTCGTTGCTATGCATCACC 59.137 52.381 0.19 0.00 38.76 4.02
222 223 1.206849 TCTCGTTGCTATGCATCACCA 59.793 47.619 0.19 0.00 38.76 4.17
223 224 2.158914 TCTCGTTGCTATGCATCACCAT 60.159 45.455 0.19 0.00 38.76 3.55
224 225 1.941975 TCGTTGCTATGCATCACCATG 59.058 47.619 0.19 0.00 38.76 3.66
225 226 1.941975 CGTTGCTATGCATCACCATGA 59.058 47.619 0.19 0.00 38.76 3.07
226 227 2.551032 CGTTGCTATGCATCACCATGAT 59.449 45.455 0.19 0.00 38.76 2.45
227 228 3.364664 CGTTGCTATGCATCACCATGATC 60.365 47.826 0.19 0.00 38.76 2.92
228 229 3.782656 TGCTATGCATCACCATGATCT 57.217 42.857 0.19 0.00 34.28 2.75
229 230 4.094830 TGCTATGCATCACCATGATCTT 57.905 40.909 0.19 0.00 34.28 2.40
230 231 3.818773 TGCTATGCATCACCATGATCTTG 59.181 43.478 0.19 1.60 34.28 3.02
231 232 3.366070 GCTATGCATCACCATGATCTTGC 60.366 47.826 0.19 0.00 34.28 4.01
232 233 1.018910 TGCATCACCATGATCTTGCG 58.981 50.000 3.07 0.30 34.28 4.85
233 234 1.019673 GCATCACCATGATCTTGCGT 58.980 50.000 3.07 0.87 34.28 5.24
234 235 1.268386 GCATCACCATGATCTTGCGTG 60.268 52.381 17.02 17.02 34.28 5.34
235 236 2.011947 CATCACCATGATCTTGCGTGT 58.988 47.619 19.89 6.63 34.28 4.49
236 237 1.441738 TCACCATGATCTTGCGTGTG 58.558 50.000 19.89 14.96 0.00 3.82
237 238 0.179181 CACCATGATCTTGCGTGTGC 60.179 55.000 15.81 0.00 43.20 4.57
248 249 2.159181 GCGTGTGCGTAGGAATTGT 58.841 52.632 0.00 0.00 40.81 2.71
249 250 0.515564 GCGTGTGCGTAGGAATTGTT 59.484 50.000 0.00 0.00 40.81 2.83
250 251 1.069500 GCGTGTGCGTAGGAATTGTTT 60.069 47.619 0.00 0.00 40.81 2.83
251 252 2.603652 GCGTGTGCGTAGGAATTGTTTT 60.604 45.455 0.00 0.00 40.81 2.43
252 253 2.970609 CGTGTGCGTAGGAATTGTTTTG 59.029 45.455 0.00 0.00 0.00 2.44
253 254 3.303461 CGTGTGCGTAGGAATTGTTTTGA 60.303 43.478 0.00 0.00 0.00 2.69
254 255 4.602995 GTGTGCGTAGGAATTGTTTTGAA 58.397 39.130 0.00 0.00 0.00 2.69
255 256 5.038033 GTGTGCGTAGGAATTGTTTTGAAA 58.962 37.500 0.00 0.00 0.00 2.69
256 257 5.689961 GTGTGCGTAGGAATTGTTTTGAAAT 59.310 36.000 0.00 0.00 0.00 2.17
257 258 6.200097 GTGTGCGTAGGAATTGTTTTGAAATT 59.800 34.615 0.00 0.00 0.00 1.82
258 259 7.380065 GTGTGCGTAGGAATTGTTTTGAAATTA 59.620 33.333 0.00 0.00 0.00 1.40
259 260 7.380065 TGTGCGTAGGAATTGTTTTGAAATTAC 59.620 33.333 0.00 0.00 0.00 1.89
260 261 7.593644 GTGCGTAGGAATTGTTTTGAAATTACT 59.406 33.333 0.00 0.00 40.52 2.24
261 262 8.784994 TGCGTAGGAATTGTTTTGAAATTACTA 58.215 29.630 0.00 0.00 38.74 1.82
282 283 4.552365 CGCCATCCTCACCGCCAT 62.552 66.667 0.00 0.00 0.00 4.40
286 287 1.819305 GCCATCCTCACCGCCATAATT 60.819 52.381 0.00 0.00 0.00 1.40
300 301 5.179368 CCGCCATAATTAAGACGATGAACAT 59.821 40.000 0.00 0.00 0.00 2.71
337 338 2.127708 ACGAGGGCCTAAAATGATCCT 58.872 47.619 5.73 0.00 0.00 3.24
340 341 3.685550 CGAGGGCCTAAAATGATCCTTGT 60.686 47.826 5.73 0.00 0.00 3.16
342 343 3.011708 AGGGCCTAAAATGATCCTTGTGT 59.988 43.478 2.82 0.00 0.00 3.72
345 346 4.220602 GGCCTAAAATGATCCTTGTGTGTT 59.779 41.667 0.00 0.00 0.00 3.32
379 380 3.606065 CTCACCACCGACGACCGAC 62.606 68.421 0.00 0.00 41.76 4.79
380 381 3.667282 CACCACCGACGACCGACT 61.667 66.667 0.00 0.00 41.76 4.18
469 479 7.758495 TCGCTTTTCAAGAAAGAAAACTAACT 58.242 30.769 2.89 0.00 41.22 2.24
617 654 6.707290 TCCTAGAACTTGTAATAAGCTTGCA 58.293 36.000 9.86 0.00 0.00 4.08
653 690 9.732130 AAATAAAATAAAATAAGCTTGCCCACA 57.268 25.926 9.86 0.00 0.00 4.17
705 743 1.302907 ATGGCTTGAGGGACTTCCAT 58.697 50.000 0.00 0.00 41.55 3.41
708 746 3.664320 TGGCTTGAGGGACTTCCATATA 58.336 45.455 0.00 0.00 41.55 0.86
776 814 5.177696 GTGATTATAGAATCGGCTGTTCCAC 59.822 44.000 5.66 0.00 43.92 4.02
829 870 2.233431 CTGGGCTGAGAGTATATGGCTC 59.767 54.545 0.00 0.00 0.00 4.70
856 897 7.364408 GCAAGATATATATAACCCCGTCTTCCA 60.364 40.741 0.00 0.00 0.00 3.53
865 906 1.134189 CCCCGTCTTCCATAGAAACCC 60.134 57.143 0.00 0.00 33.81 4.11
867 908 2.158943 CCCGTCTTCCATAGAAACCCTC 60.159 54.545 0.00 0.00 33.81 4.30
868 909 2.766828 CCGTCTTCCATAGAAACCCTCT 59.233 50.000 0.00 0.00 38.28 3.69
869 910 3.181474 CCGTCTTCCATAGAAACCCTCTC 60.181 52.174 0.00 0.00 35.41 3.20
892 933 4.201724 CGATCCAATCTGGTCGAAAGAAAC 60.202 45.833 3.39 0.00 45.01 2.78
907 948 1.627550 GAAACTCGCCGGAAGCAGAC 61.628 60.000 5.05 0.00 44.04 3.51
908 949 2.377628 AAACTCGCCGGAAGCAGACA 62.378 55.000 5.05 0.00 44.04 3.41
910 951 2.048222 TCGCCGGAAGCAGACAAG 60.048 61.111 5.05 0.00 44.04 3.16
917 958 1.569479 GGAAGCAGACAAGCACCGAC 61.569 60.000 0.00 0.00 36.85 4.79
918 959 1.891060 GAAGCAGACAAGCACCGACG 61.891 60.000 0.00 0.00 36.85 5.12
919 960 2.355837 GCAGACAAGCACCGACGA 60.356 61.111 0.00 0.00 0.00 4.20
923 964 3.222354 GACAAGCACCGACGAGGGT 62.222 63.158 0.00 1.76 46.96 4.34
930 984 2.283529 ACCGACGAGGGTGAAGCAT 61.284 57.895 0.00 0.00 46.96 3.79
953 1007 0.683504 ACTACCGAGGCGATTGGTCT 60.684 55.000 2.82 0.00 42.71 3.85
963 1017 1.429148 CGATTGGTCTGGCGGCTTAC 61.429 60.000 11.43 8.15 0.00 2.34
996 1050 1.410517 ACATTCAGATCAGGCGACGAT 59.589 47.619 0.00 0.00 0.00 3.73
1027 1083 4.384056 CGAACCAATATCTTCCTGCAGAT 58.616 43.478 17.39 2.99 37.31 2.90
1054 1110 3.898517 TCGATGACGAGATGGACATAC 57.101 47.619 0.00 0.00 43.81 2.39
1058 1114 1.681264 TGACGAGATGGACATACGCAT 59.319 47.619 9.91 0.00 0.00 4.73
1065 1121 0.037697 TGGACATACGCATATCGGCC 60.038 55.000 0.00 0.00 43.86 6.13
1075 1131 1.784525 CATATCGGCCGAGGAACTTC 58.215 55.000 33.87 0.00 41.55 3.01
1092 1148 0.460311 TTCTTCCGGAGCTCGAATCC 59.540 55.000 3.34 6.31 42.43 3.01
1094 1150 1.133884 TCTTCCGGAGCTCGAATCCTA 60.134 52.381 3.34 0.89 42.43 2.94
1095 1151 1.001158 CTTCCGGAGCTCGAATCCTAC 60.001 57.143 3.34 0.00 42.43 3.18
1098 1154 0.317103 CGGAGCTCGAATCCTACGTG 60.317 60.000 7.83 0.00 42.43 4.49
1114 1170 0.236711 CGTGCAGGTGCTCAAAGAAG 59.763 55.000 3.18 0.00 42.66 2.85
1117 1173 1.134128 TGCAGGTGCTCAAAGAAGTGA 60.134 47.619 3.18 0.00 42.66 3.41
1159 1215 0.242825 CTTCCACTCCAAGACGCGTA 59.757 55.000 13.97 0.00 0.00 4.42
1162 1218 1.135199 TCCACTCCAAGACGCGTATTC 60.135 52.381 17.44 1.50 0.00 1.75
1191 1247 2.834574 CGGTAATGTGCCGCAAAATA 57.165 45.000 0.00 0.00 42.82 1.40
1193 1249 3.502920 CGGTAATGTGCCGCAAAATAAA 58.497 40.909 0.00 0.00 42.82 1.40
1208 1264 7.070962 GCAAAATAAATGAAGCGATTCGTAG 57.929 36.000 8.81 0.00 0.00 3.51
1225 1281 1.678101 GTAGCATGCACATTCTTCCCC 59.322 52.381 21.98 0.00 0.00 4.81
1292 1348 1.265365 GGTGAACAAGCAGAAGCAGAC 59.735 52.381 0.00 0.00 45.49 3.51
1296 1352 1.436600 ACAAGCAGAAGCAGACGATG 58.563 50.000 0.00 0.00 45.49 3.84
1299 1355 0.175302 AGCAGAAGCAGACGATGGAG 59.825 55.000 0.00 0.00 45.49 3.86
1307 1363 1.542030 GCAGACGATGGAGGACGATAT 59.458 52.381 0.00 0.00 0.00 1.63
1312 1368 2.163509 CGATGGAGGACGATATGGACT 58.836 52.381 0.00 0.00 0.00 3.85
1316 1372 3.497332 TGGAGGACGATATGGACTTAGG 58.503 50.000 0.00 0.00 0.00 2.69
1321 1377 3.056749 GGACGATATGGACTTAGGCGAAT 60.057 47.826 0.00 0.00 0.00 3.34
1347 1403 4.210331 CCCAAGAATTAACCATGGAGGAG 58.790 47.826 21.47 0.00 41.22 3.69
1349 1405 4.325344 CCAAGAATTAACCATGGAGGAGGT 60.325 45.833 21.47 0.00 41.22 3.85
1350 1406 4.779993 AGAATTAACCATGGAGGAGGTC 57.220 45.455 21.47 8.27 41.22 3.85
1379 1435 2.197577 CGAGGAAGAGGATTTCGCTTC 58.802 52.381 0.05 0.05 46.92 3.86
1439 1495 0.453390 GGATGCGGCTTCTTCAAAGG 59.547 55.000 14.51 0.00 0.00 3.11
1479 1535 8.198778 ACATGCATGCATTATCACTCAATTTTA 58.801 29.630 30.32 0.00 33.90 1.52
1480 1536 9.203421 CATGCATGCATTATCACTCAATTTTAT 57.797 29.630 30.32 0.74 33.90 1.40
1510 1566 7.386573 GCTAATAGCTACTTCTCATTTCCTTCC 59.613 40.741 4.79 0.00 38.45 3.46
1527 1583 3.254903 CCTTCCCGTTCTTTTACCTTTGG 59.745 47.826 0.00 0.00 0.00 3.28
1530 1586 2.224784 CCCGTTCTTTTACCTTTGGTCG 59.775 50.000 0.00 0.00 37.09 4.79
1531 1587 3.132925 CCGTTCTTTTACCTTTGGTCGA 58.867 45.455 0.00 0.00 37.09 4.20
1535 1591 5.049954 CGTTCTTTTACCTTTGGTCGATTGA 60.050 40.000 0.00 0.00 37.09 2.57
1554 1610 4.408182 TGACCTTCCTTCTATAAGCTGC 57.592 45.455 0.00 0.00 0.00 5.25
1570 1626 0.037046 CTGCAAGGGAATGGGTTTGC 60.037 55.000 1.39 1.39 44.56 3.68
1571 1627 2.056985 GCAAGGGAATGGGTTTGCA 58.943 52.632 3.43 0.00 43.93 4.08
1572 1628 0.320683 GCAAGGGAATGGGTTTGCAC 60.321 55.000 3.43 0.00 43.93 4.57
1574 1630 1.001181 CAAGGGAATGGGTTTGCACTG 59.999 52.381 0.00 0.00 0.00 3.66
1576 1632 1.047801 GGGAATGGGTTTGCACTGTT 58.952 50.000 0.00 0.00 0.00 3.16
1577 1633 1.416030 GGGAATGGGTTTGCACTGTTT 59.584 47.619 0.00 0.00 0.00 2.83
1578 1634 2.482864 GGAATGGGTTTGCACTGTTTG 58.517 47.619 0.00 0.00 0.00 2.93
1634 1690 3.311966 GCATTCTTCACTTTGGTGCTTC 58.688 45.455 0.00 0.00 42.72 3.86
1641 1697 1.068895 CACTTTGGTGCTTCCATGCAA 59.931 47.619 0.00 0.00 46.60 4.08
1668 1724 1.089920 GAGTTCCATGCGCTTCACAT 58.910 50.000 9.73 0.00 0.00 3.21
1672 1728 1.939974 TCCATGCGCTTCACATACTC 58.060 50.000 9.73 0.00 0.00 2.59
1729 1785 4.505922 CGTGAATACCTTGCAGATCTTCTC 59.494 45.833 0.00 0.00 0.00 2.87
1737 1793 5.649831 ACCTTGCAGATCTTCTCCATTAAAC 59.350 40.000 0.00 0.00 0.00 2.01
1740 1796 6.053632 TGCAGATCTTCTCCATTAAACTCA 57.946 37.500 0.00 0.00 0.00 3.41
1741 1797 5.877012 TGCAGATCTTCTCCATTAAACTCAC 59.123 40.000 0.00 0.00 0.00 3.51
1758 1814 2.749621 CTCACAGAAATTAAAGGCGGCT 59.250 45.455 5.25 5.25 0.00 5.52
1774 1830 0.101219 GGCTTCGAATGGCCATTGTC 59.899 55.000 35.31 20.74 46.84 3.18
1787 1843 3.605634 GCCATTGTCTGTGTATGGTGTA 58.394 45.455 0.00 0.00 40.73 2.90
1792 1848 4.948341 TGTCTGTGTATGGTGTAGTTGT 57.052 40.909 0.00 0.00 0.00 3.32
1804 1860 2.148052 TAGTTGTTGCCCGGGACCA 61.148 57.895 29.31 14.41 0.00 4.02
1805 1861 1.493854 TAGTTGTTGCCCGGGACCAT 61.494 55.000 29.31 4.81 0.00 3.55
1833 1889 2.160417 CACAATCGCAACCTTCTCTTCC 59.840 50.000 0.00 0.00 0.00 3.46
1836 1892 0.038526 TCGCAACCTTCTCTTCCGTC 60.039 55.000 0.00 0.00 0.00 4.79
1845 1901 1.030488 TCTCTTCCGTCGCAGTAGGG 61.030 60.000 0.00 0.00 0.00 3.53
1852 1908 1.448013 GTCGCAGTAGGGCAAGGAC 60.448 63.158 0.00 0.00 0.00 3.85
1866 1922 4.553668 GGACCCAAATAGTCCGGC 57.446 61.111 0.00 0.00 44.16 6.13
1919 1975 4.470334 TTCTTTTGGGGAATATTGCTGC 57.530 40.909 6.93 0.00 0.00 5.25
1948 2004 0.820871 ACCGCCTGCTTTTGTTTTGA 59.179 45.000 0.00 0.00 0.00 2.69
1956 2012 4.980434 CCTGCTTTTGTTTTGACATCTCTG 59.020 41.667 0.00 0.00 0.00 3.35
2081 2156 5.435686 AGTTAAATGTGGAGCCATGTCTA 57.564 39.130 0.00 0.00 0.00 2.59
2091 2166 4.352298 TGGAGCCATGTCTAGAGATAGAGA 59.648 45.833 1.40 0.00 0.00 3.10
2102 2177 7.723172 TGTCTAGAGATAGAGAATTGATCAGCA 59.277 37.037 0.00 0.00 0.00 4.41
2103 2178 8.575589 GTCTAGAGATAGAGAATTGATCAGCAA 58.424 37.037 0.00 0.00 41.53 3.91
2164 2239 2.032377 CGTTTGCTTTGAGAACCGCTTA 60.032 45.455 0.00 0.00 0.00 3.09
2199 2274 2.882876 CATGGAGCTGCTTGTGGC 59.117 61.111 12.29 0.00 42.22 5.01
2203 2278 2.666190 GAGCTGCTTGTGGCGACA 60.666 61.111 2.53 0.00 45.43 4.35
2236 2311 0.534877 TCTGCAGCATCCGTGTTGTT 60.535 50.000 9.47 0.00 38.64 2.83
2315 2393 2.101415 CCCTACTCACGCAAGATCATCA 59.899 50.000 0.00 0.00 43.62 3.07
2327 2405 4.083003 GCAAGATCATCAACGGTAAAACCA 60.083 41.667 0.00 0.00 38.47 3.67
2602 2680 2.567615 AGAGATTACCGTTGCTTGGTCT 59.432 45.455 0.00 0.00 40.96 3.85
2615 2693 2.884639 GCTTGGTCTTTCCTTGTAGCAA 59.115 45.455 0.00 0.00 37.07 3.91
2660 2738 3.055747 TGTGGGTTTTTGAAACCTCCAAC 60.056 43.478 18.87 13.40 40.15 3.77
2674 2752 2.358898 CCTCCAACCAGTGAACAACAAG 59.641 50.000 0.00 0.00 0.00 3.16
2695 2773 2.114616 GATCTCATGAGACTGGTGGGT 58.885 52.381 27.37 9.24 40.75 4.51
2699 2777 3.077359 CTCATGAGACTGGTGGGTTTTC 58.923 50.000 18.34 0.00 0.00 2.29
2730 2808 3.673338 CGTTTACTTGAAGATGTCAGCGA 59.327 43.478 0.00 0.00 37.61 4.93
2731 2809 4.327357 CGTTTACTTGAAGATGTCAGCGAT 59.673 41.667 0.00 0.00 37.61 4.58
2732 2810 5.554636 GTTTACTTGAAGATGTCAGCGATG 58.445 41.667 0.00 0.00 37.61 3.84
2733 2811 2.005451 ACTTGAAGATGTCAGCGATGC 58.995 47.619 0.00 0.00 37.61 3.91
2734 2812 2.277969 CTTGAAGATGTCAGCGATGCT 58.722 47.619 0.00 0.00 40.77 3.79
2743 2821 2.437359 AGCGATGCTGGACCAAGC 60.437 61.111 0.00 2.20 43.82 4.01
2749 2827 3.769201 GCTGGACCAAGCAAAGCT 58.231 55.556 10.08 0.00 43.01 3.74
2761 2839 2.955614 AGCAAAGCTTTGATGATGTGC 58.044 42.857 37.14 22.55 40.55 4.57
2762 2840 2.561419 AGCAAAGCTTTGATGATGTGCT 59.439 40.909 37.14 24.28 40.55 4.40
2763 2841 3.006537 AGCAAAGCTTTGATGATGTGCTT 59.993 39.130 37.14 11.31 44.51 3.91
2764 2842 3.367025 GCAAAGCTTTGATGATGTGCTTC 59.633 43.478 37.14 14.76 42.23 3.86
2765 2843 4.806330 CAAAGCTTTGATGATGTGCTTCT 58.194 39.130 31.24 0.00 42.23 2.85
2766 2844 4.436242 AAGCTTTGATGATGTGCTTCTG 57.564 40.909 0.00 0.00 39.40 3.02
2767 2845 3.418995 AGCTTTGATGATGTGCTTCTGT 58.581 40.909 0.00 0.00 0.00 3.41
2768 2846 3.439476 AGCTTTGATGATGTGCTTCTGTC 59.561 43.478 0.00 0.00 0.00 3.51
2769 2847 3.427233 GCTTTGATGATGTGCTTCTGTCC 60.427 47.826 0.00 0.00 0.00 4.02
2770 2848 2.014335 TGATGATGTGCTTCTGTCCG 57.986 50.000 0.00 0.00 0.00 4.79
2771 2849 1.293924 GATGATGTGCTTCTGTCCGG 58.706 55.000 0.00 0.00 0.00 5.14
2772 2850 0.615331 ATGATGTGCTTCTGTCCGGT 59.385 50.000 0.00 0.00 0.00 5.28
2773 2851 0.037326 TGATGTGCTTCTGTCCGGTC 60.037 55.000 0.00 0.00 0.00 4.79
2774 2852 0.247736 GATGTGCTTCTGTCCGGTCT 59.752 55.000 0.00 0.00 0.00 3.85
2775 2853 0.036952 ATGTGCTTCTGTCCGGTCTG 60.037 55.000 0.00 0.00 0.00 3.51
2776 2854 1.367840 GTGCTTCTGTCCGGTCTGT 59.632 57.895 0.00 0.00 0.00 3.41
2777 2855 0.249911 GTGCTTCTGTCCGGTCTGTT 60.250 55.000 0.00 0.00 0.00 3.16
2778 2856 0.033504 TGCTTCTGTCCGGTCTGTTC 59.966 55.000 0.00 0.00 0.00 3.18
2779 2857 0.033504 GCTTCTGTCCGGTCTGTTCA 59.966 55.000 0.00 0.00 0.00 3.18
2780 2858 1.540363 GCTTCTGTCCGGTCTGTTCAA 60.540 52.381 0.00 0.00 0.00 2.69
2781 2859 2.135933 CTTCTGTCCGGTCTGTTCAAC 58.864 52.381 0.00 0.00 0.00 3.18
2782 2860 1.410004 TCTGTCCGGTCTGTTCAACT 58.590 50.000 0.00 0.00 0.00 3.16
2783 2861 1.068588 TCTGTCCGGTCTGTTCAACTG 59.931 52.381 0.00 0.00 0.00 3.16
2784 2862 0.828022 TGTCCGGTCTGTTCAACTGT 59.172 50.000 0.00 0.00 0.00 3.55
2785 2863 1.217882 GTCCGGTCTGTTCAACTGTG 58.782 55.000 0.00 0.00 0.00 3.66
2786 2864 0.105964 TCCGGTCTGTTCAACTGTGG 59.894 55.000 0.00 0.00 0.00 4.17
2787 2865 0.105964 CCGGTCTGTTCAACTGTGGA 59.894 55.000 0.00 0.00 0.00 4.02
2788 2866 1.474320 CCGGTCTGTTCAACTGTGGAA 60.474 52.381 0.00 0.00 0.00 3.53
2789 2867 1.867233 CGGTCTGTTCAACTGTGGAAG 59.133 52.381 0.00 0.00 0.00 3.46
2790 2868 2.741878 CGGTCTGTTCAACTGTGGAAGT 60.742 50.000 0.00 0.00 42.60 3.01
2791 2869 2.872858 GGTCTGTTCAACTGTGGAAGTC 59.127 50.000 0.00 0.00 38.56 3.01
2810 2888 1.165907 CGTGCAGGACCAAGCAAAGA 61.166 55.000 12.56 0.00 43.20 2.52
2844 2984 6.545666 TGTGTGTCCATTCAGTCTTGTTTAAT 59.454 34.615 0.00 0.00 0.00 1.40
2860 3000 8.826710 TCTTGTTTAATTGTGCTATCGATTAGG 58.173 33.333 1.71 0.00 0.00 2.69
2967 4759 9.169592 AGTTAATAGTATTATGTTGCGTGGTTT 57.830 29.630 3.44 0.00 0.00 3.27
3028 4820 2.596904 AGGTACGCATCCATGTACAC 57.403 50.000 0.00 0.00 42.09 2.90
3099 4892 2.846206 TCTATGAGATGCACCAAGGGTT 59.154 45.455 0.00 0.00 31.02 4.11
3103 4896 2.308570 TGAGATGCACCAAGGGTTGTAT 59.691 45.455 0.00 0.00 31.02 2.29
3105 4898 4.018870 TGAGATGCACCAAGGGTTGTATTA 60.019 41.667 0.00 0.00 31.02 0.98
3186 4979 7.954620 TCCTACCTCTTCCTTTTAGAAGTAACT 59.045 37.037 1.56 0.00 43.17 2.24
3204 4997 9.269453 GAAGTAACTAATGTTGGATATGTACCC 57.731 37.037 0.00 0.00 37.59 3.69
3205 4998 8.562949 AGTAACTAATGTTGGATATGTACCCT 57.437 34.615 0.00 0.00 37.59 4.34
3206 4999 9.664777 AGTAACTAATGTTGGATATGTACCCTA 57.335 33.333 0.00 0.00 37.59 3.53
3207 5000 9.924650 GTAACTAATGTTGGATATGTACCCTAG 57.075 37.037 0.00 0.00 37.59 3.02
3208 5001 8.792830 AACTAATGTTGGATATGTACCCTAGA 57.207 34.615 0.00 0.00 34.71 2.43
3209 5002 8.191534 ACTAATGTTGGATATGTACCCTAGAC 57.808 38.462 0.00 0.00 0.00 2.59
3210 5003 7.787904 ACTAATGTTGGATATGTACCCTAGACA 59.212 37.037 0.00 0.00 0.00 3.41
3211 5004 7.633018 AATGTTGGATATGTACCCTAGACAT 57.367 36.000 0.00 0.00 40.59 3.06
3212 5005 6.419484 TGTTGGATATGTACCCTAGACATG 57.581 41.667 5.94 0.00 38.03 3.21
3213 5006 5.903010 TGTTGGATATGTACCCTAGACATGT 59.097 40.000 0.00 0.00 38.03 3.21
3214 5007 7.070629 TGTTGGATATGTACCCTAGACATGTA 58.929 38.462 0.00 0.00 38.03 2.29
3215 5008 7.014905 TGTTGGATATGTACCCTAGACATGTAC 59.985 40.741 0.00 1.54 38.03 2.90
3256 5049 7.334671 TGGACTTTTGGTTTTTAAATGTGGTTC 59.665 33.333 0.00 0.00 0.00 3.62
3279 5072 7.812309 TCACAGTATCAAAGTTCGTGAATAG 57.188 36.000 0.00 0.00 0.00 1.73
3424 5217 9.260002 GTTGATTTTTGAATAAGTTGTGACCAT 57.740 29.630 0.00 0.00 0.00 3.55
3425 5218 9.474920 TTGATTTTTGAATAAGTTGTGACCATC 57.525 29.630 0.00 0.00 0.00 3.51
3436 5229 2.229792 TGTGACCATCTTCAAGTTGCC 58.770 47.619 0.00 0.00 0.00 4.52
3477 5270 8.167985 CACAAACTTGTCAAGGTTTAAAACATG 58.832 33.333 13.33 3.87 35.93 3.21
3597 5390 5.945784 TCAATATGGTTTCAGGTTCAAGGAG 59.054 40.000 0.00 0.00 0.00 3.69
3598 5391 1.981256 TGGTTTCAGGTTCAAGGAGC 58.019 50.000 0.00 0.00 0.00 4.70
3601 5394 2.155279 GTTTCAGGTTCAAGGAGCCTC 58.845 52.381 0.00 0.00 41.26 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.120054 AGTAGGACTCCTCTTTCCTAGTC 57.880 47.826 0.00 0.00 42.31 2.59
1 2 5.120054 GAGTAGGACTCCTCTTTCCTAGT 57.880 47.826 0.00 4.93 46.65 2.57
13 14 3.131400 CCAGCAAAGTAGGAGTAGGACTC 59.869 52.174 0.00 0.00 44.32 3.36
14 15 3.100671 CCAGCAAAGTAGGAGTAGGACT 58.899 50.000 0.00 0.00 0.00 3.85
15 16 3.097614 TCCAGCAAAGTAGGAGTAGGAC 58.902 50.000 0.00 0.00 0.00 3.85
16 17 3.468071 TCCAGCAAAGTAGGAGTAGGA 57.532 47.619 0.00 0.00 0.00 2.94
17 18 3.243569 CGATCCAGCAAAGTAGGAGTAGG 60.244 52.174 0.00 0.00 34.40 3.18
18 19 3.243569 CCGATCCAGCAAAGTAGGAGTAG 60.244 52.174 0.00 0.00 34.40 2.57
19 20 2.693591 CCGATCCAGCAAAGTAGGAGTA 59.306 50.000 0.00 0.00 34.40 2.59
20 21 1.482593 CCGATCCAGCAAAGTAGGAGT 59.517 52.381 0.00 0.00 34.40 3.85
21 22 1.757118 TCCGATCCAGCAAAGTAGGAG 59.243 52.381 0.00 0.00 34.40 3.69
22 23 1.757118 CTCCGATCCAGCAAAGTAGGA 59.243 52.381 0.00 0.00 35.59 2.94
23 24 1.482593 ACTCCGATCCAGCAAAGTAGG 59.517 52.381 0.00 0.00 0.00 3.18
24 25 2.482142 GGACTCCGATCCAGCAAAGTAG 60.482 54.545 0.00 0.00 38.77 2.57
25 26 1.480954 GGACTCCGATCCAGCAAAGTA 59.519 52.381 0.00 0.00 38.77 2.24
26 27 0.250513 GGACTCCGATCCAGCAAAGT 59.749 55.000 0.00 0.00 38.77 2.66
27 28 0.250234 TGGACTCCGATCCAGCAAAG 59.750 55.000 0.00 0.00 44.14 2.77
28 29 2.371784 TGGACTCCGATCCAGCAAA 58.628 52.632 0.00 0.00 44.14 3.68
29 30 4.128580 TGGACTCCGATCCAGCAA 57.871 55.556 0.00 0.00 44.14 3.91
33 34 0.470080 GATCCCTGGACTCCGATCCA 60.470 60.000 0.00 3.43 46.92 3.41
34 35 1.528292 CGATCCCTGGACTCCGATCC 61.528 65.000 0.00 0.00 39.45 3.36
35 36 1.960612 CGATCCCTGGACTCCGATC 59.039 63.158 0.00 0.00 0.00 3.69
36 37 2.203771 GCGATCCCTGGACTCCGAT 61.204 63.158 0.00 0.00 0.00 4.18
37 38 2.833582 GCGATCCCTGGACTCCGA 60.834 66.667 0.00 0.00 0.00 4.55
38 39 3.917760 GGCGATCCCTGGACTCCG 61.918 72.222 0.00 0.00 0.00 4.63
39 40 2.105806 GATGGCGATCCCTGGACTCC 62.106 65.000 0.00 0.00 0.00 3.85
40 41 1.369321 GATGGCGATCCCTGGACTC 59.631 63.158 0.00 0.00 0.00 3.36
41 42 2.502492 CGATGGCGATCCCTGGACT 61.502 63.158 2.84 0.00 40.82 3.85
42 43 2.029666 CGATGGCGATCCCTGGAC 59.970 66.667 2.84 0.00 40.82 4.02
43 44 2.123468 TCGATGGCGATCCCTGGA 60.123 61.111 2.84 0.00 42.51 3.86
44 45 2.341543 CTCGATGGCGATCCCTGG 59.658 66.667 2.84 0.00 46.80 4.45
45 46 1.527433 TAGCTCGATGGCGATCCCTG 61.527 60.000 2.84 0.00 46.80 4.45
46 47 0.827925 TTAGCTCGATGGCGATCCCT 60.828 55.000 2.84 0.49 46.80 4.20
47 48 0.033504 TTTAGCTCGATGGCGATCCC 59.966 55.000 2.84 0.00 46.80 3.85
48 49 1.140816 GTTTAGCTCGATGGCGATCC 58.859 55.000 2.84 0.00 46.80 3.36
49 50 0.778815 CGTTTAGCTCGATGGCGATC 59.221 55.000 0.00 0.00 46.80 3.69
50 51 0.102481 ACGTTTAGCTCGATGGCGAT 59.898 50.000 0.00 0.00 46.80 4.58
51 52 0.800683 CACGTTTAGCTCGATGGCGA 60.801 55.000 0.00 0.00 45.71 5.54
52 53 1.076533 ACACGTTTAGCTCGATGGCG 61.077 55.000 0.00 0.00 37.29 5.69
53 54 0.370273 CACACGTTTAGCTCGATGGC 59.630 55.000 0.00 0.00 0.00 4.40
54 55 0.370273 GCACACGTTTAGCTCGATGG 59.630 55.000 0.00 0.00 0.00 3.51
55 56 1.350193 AGCACACGTTTAGCTCGATG 58.650 50.000 0.00 0.07 32.05 3.84
56 57 2.422479 TCTAGCACACGTTTAGCTCGAT 59.578 45.455 9.17 0.00 39.68 3.59
57 58 1.808343 TCTAGCACACGTTTAGCTCGA 59.192 47.619 9.17 6.60 39.68 4.04
58 59 2.257974 TCTAGCACACGTTTAGCTCG 57.742 50.000 9.17 4.49 39.68 5.03
59 60 3.576648 AGTTCTAGCACACGTTTAGCTC 58.423 45.455 9.17 0.00 39.68 4.09
60 61 3.576648 GAGTTCTAGCACACGTTTAGCT 58.423 45.455 10.52 10.52 42.14 3.32
61 62 2.341760 CGAGTTCTAGCACACGTTTAGC 59.658 50.000 4.36 0.00 0.00 3.09
62 63 2.915463 CCGAGTTCTAGCACACGTTTAG 59.085 50.000 10.84 0.00 0.00 1.85
63 64 2.553602 TCCGAGTTCTAGCACACGTTTA 59.446 45.455 10.84 0.00 0.00 2.01
64 65 1.338973 TCCGAGTTCTAGCACACGTTT 59.661 47.619 10.84 0.00 0.00 3.60
65 66 0.956633 TCCGAGTTCTAGCACACGTT 59.043 50.000 10.84 0.00 0.00 3.99
66 67 0.522180 CTCCGAGTTCTAGCACACGT 59.478 55.000 10.84 0.00 0.00 4.49
67 68 0.179161 CCTCCGAGTTCTAGCACACG 60.179 60.000 5.46 5.46 0.00 4.49
68 69 0.889306 ACCTCCGAGTTCTAGCACAC 59.111 55.000 0.00 0.00 0.00 3.82
69 70 0.888619 CACCTCCGAGTTCTAGCACA 59.111 55.000 0.00 0.00 0.00 4.57
70 71 0.458716 GCACCTCCGAGTTCTAGCAC 60.459 60.000 0.00 0.00 0.00 4.40
71 72 1.605058 GGCACCTCCGAGTTCTAGCA 61.605 60.000 0.00 0.00 0.00 3.49
72 73 1.142097 GGCACCTCCGAGTTCTAGC 59.858 63.158 0.00 0.00 0.00 3.42
82 83 2.613506 CCGAAACAACGGCACCTCC 61.614 63.158 0.00 0.00 46.20 4.30
83 84 2.943653 CCGAAACAACGGCACCTC 59.056 61.111 0.00 0.00 46.20 3.85
90 91 1.721489 CGATCAAGCACCGAAACAACG 60.721 52.381 0.00 0.00 0.00 4.10
91 92 1.399727 CCGATCAAGCACCGAAACAAC 60.400 52.381 0.00 0.00 0.00 3.32
92 93 0.871722 CCGATCAAGCACCGAAACAA 59.128 50.000 0.00 0.00 0.00 2.83
93 94 0.250124 ACCGATCAAGCACCGAAACA 60.250 50.000 0.00 0.00 0.00 2.83
94 95 0.442699 GACCGATCAAGCACCGAAAC 59.557 55.000 0.00 0.00 0.00 2.78
95 96 1.011968 CGACCGATCAAGCACCGAAA 61.012 55.000 0.00 0.00 0.00 3.46
96 97 1.445410 CGACCGATCAAGCACCGAA 60.445 57.895 0.00 0.00 0.00 4.30
97 98 2.180769 CGACCGATCAAGCACCGA 59.819 61.111 0.00 0.00 0.00 4.69
98 99 2.885644 CCGACCGATCAAGCACCG 60.886 66.667 0.00 0.00 0.00 4.94
99 100 2.511600 CCCGACCGATCAAGCACC 60.512 66.667 0.00 0.00 0.00 5.01
100 101 3.195698 GCCCGACCGATCAAGCAC 61.196 66.667 0.00 0.00 0.00 4.40
101 102 4.467084 GGCCCGACCGATCAAGCA 62.467 66.667 0.00 0.00 0.00 3.91
119 120 4.332186 TGATGTAGTCGTACGTCTTCAC 57.668 45.455 19.61 13.19 43.23 3.18
120 121 4.378770 GGTTGATGTAGTCGTACGTCTTCA 60.379 45.833 19.61 19.79 43.23 3.02
121 122 4.094212 GGTTGATGTAGTCGTACGTCTTC 58.906 47.826 19.61 15.02 43.23 2.87
122 123 3.425359 CGGTTGATGTAGTCGTACGTCTT 60.425 47.826 19.61 2.66 43.23 3.01
123 124 2.094894 CGGTTGATGTAGTCGTACGTCT 59.905 50.000 18.54 18.54 43.23 4.18
124 125 2.434761 CGGTTGATGTAGTCGTACGTC 58.565 52.381 16.05 10.06 43.16 4.34
125 126 1.466360 GCGGTTGATGTAGTCGTACGT 60.466 52.381 16.05 0.00 30.95 3.57
126 127 1.186030 GCGGTTGATGTAGTCGTACG 58.814 55.000 9.53 9.53 30.95 3.67
127 128 1.186030 CGCGGTTGATGTAGTCGTAC 58.814 55.000 0.00 0.00 0.00 3.67
128 129 0.804364 ACGCGGTTGATGTAGTCGTA 59.196 50.000 12.47 0.00 0.00 3.43
129 130 0.038892 AACGCGGTTGATGTAGTCGT 60.039 50.000 12.47 0.00 0.00 4.34
130 131 0.365523 CAACGCGGTTGATGTAGTCG 59.634 55.000 12.47 0.00 45.28 4.18
131 132 1.126113 CACAACGCGGTTGATGTAGTC 59.874 52.381 22.26 0.00 45.28 2.59
132 133 1.144969 CACAACGCGGTTGATGTAGT 58.855 50.000 22.26 2.04 45.28 2.73
133 134 0.179225 GCACAACGCGGTTGATGTAG 60.179 55.000 22.26 1.41 45.28 2.74
134 135 0.601576 AGCACAACGCGGTTGATGTA 60.602 50.000 22.26 0.00 45.28 2.29
135 136 0.601576 TAGCACAACGCGGTTGATGT 60.602 50.000 22.26 11.72 45.28 3.06
136 137 0.515127 TTAGCACAACGCGGTTGATG 59.485 50.000 22.26 17.39 45.28 3.07
137 138 0.515564 GTTAGCACAACGCGGTTGAT 59.484 50.000 22.26 13.46 45.28 2.57
138 139 1.823260 CGTTAGCACAACGCGGTTGA 61.823 55.000 22.26 3.38 45.28 3.18
158 159 1.226603 CGTAGACCGGAAGCGGAAG 60.227 63.158 9.46 0.00 0.00 3.46
159 160 1.651240 CTCGTAGACCGGAAGCGGAA 61.651 60.000 9.46 0.00 37.11 4.30
160 161 2.046023 TCGTAGACCGGAAGCGGA 60.046 61.111 9.46 0.00 37.11 5.54
161 162 2.408022 CTCGTAGACCGGAAGCGG 59.592 66.667 9.46 0.00 37.11 5.52
162 163 2.408022 CCTCGTAGACCGGAAGCG 59.592 66.667 9.46 7.33 37.11 4.68
163 164 0.749454 TACCCTCGTAGACCGGAAGC 60.749 60.000 9.46 0.00 37.11 3.86
164 165 1.674962 CTTACCCTCGTAGACCGGAAG 59.325 57.143 9.46 0.00 37.11 3.46
165 166 1.004745 ACTTACCCTCGTAGACCGGAA 59.995 52.381 9.46 0.00 37.11 4.30
166 167 0.620556 ACTTACCCTCGTAGACCGGA 59.379 55.000 9.46 0.00 37.11 5.14
167 168 2.158900 TCTACTTACCCTCGTAGACCGG 60.159 54.545 0.00 0.00 37.71 5.28
168 169 3.185246 TCTACTTACCCTCGTAGACCG 57.815 52.381 0.00 0.00 37.71 4.79
171 172 4.697352 GTGTTGTCTACTTACCCTCGTAGA 59.303 45.833 0.00 0.00 39.65 2.59
172 173 4.699257 AGTGTTGTCTACTTACCCTCGTAG 59.301 45.833 0.00 0.00 35.55 3.51
173 174 4.655963 AGTGTTGTCTACTTACCCTCGTA 58.344 43.478 0.00 0.00 0.00 3.43
174 175 3.494332 AGTGTTGTCTACTTACCCTCGT 58.506 45.455 0.00 0.00 0.00 4.18
175 176 3.757493 AGAGTGTTGTCTACTTACCCTCG 59.243 47.826 0.00 0.00 0.00 4.63
176 177 4.158209 GGAGAGTGTTGTCTACTTACCCTC 59.842 50.000 0.00 0.00 0.00 4.30
177 178 4.087907 GGAGAGTGTTGTCTACTTACCCT 58.912 47.826 0.00 0.00 0.00 4.34
178 179 3.195182 GGGAGAGTGTTGTCTACTTACCC 59.805 52.174 0.00 0.00 36.99 3.69
179 180 3.195182 GGGGAGAGTGTTGTCTACTTACC 59.805 52.174 0.00 0.00 0.00 2.85
180 181 4.087907 AGGGGAGAGTGTTGTCTACTTAC 58.912 47.826 0.00 0.00 0.00 2.34
181 182 4.044317 AGAGGGGAGAGTGTTGTCTACTTA 59.956 45.833 0.00 0.00 0.00 2.24
182 183 3.166679 GAGGGGAGAGTGTTGTCTACTT 58.833 50.000 0.00 0.00 0.00 2.24
183 184 2.380590 AGAGGGGAGAGTGTTGTCTACT 59.619 50.000 0.00 0.00 0.00 2.57
184 185 2.756207 GAGAGGGGAGAGTGTTGTCTAC 59.244 54.545 0.00 0.00 0.00 2.59
185 186 2.618302 CGAGAGGGGAGAGTGTTGTCTA 60.618 54.545 0.00 0.00 0.00 2.59
186 187 1.888826 CGAGAGGGGAGAGTGTTGTCT 60.889 57.143 0.00 0.00 0.00 3.41
187 188 0.528470 CGAGAGGGGAGAGTGTTGTC 59.472 60.000 0.00 0.00 0.00 3.18
188 189 0.178958 ACGAGAGGGGAGAGTGTTGT 60.179 55.000 0.00 0.00 0.00 3.32
189 190 0.969894 AACGAGAGGGGAGAGTGTTG 59.030 55.000 0.00 0.00 0.00 3.33
190 191 0.969894 CAACGAGAGGGGAGAGTGTT 59.030 55.000 0.00 0.00 0.00 3.32
191 192 1.536943 GCAACGAGAGGGGAGAGTGT 61.537 60.000 0.00 0.00 0.00 3.55
192 193 1.216710 GCAACGAGAGGGGAGAGTG 59.783 63.158 0.00 0.00 0.00 3.51
193 194 0.331954 TAGCAACGAGAGGGGAGAGT 59.668 55.000 0.00 0.00 0.00 3.24
194 195 1.339610 CATAGCAACGAGAGGGGAGAG 59.660 57.143 0.00 0.00 0.00 3.20
195 196 1.403814 CATAGCAACGAGAGGGGAGA 58.596 55.000 0.00 0.00 0.00 3.71
196 197 0.249657 GCATAGCAACGAGAGGGGAG 60.250 60.000 0.00 0.00 0.00 4.30
197 198 0.975556 TGCATAGCAACGAGAGGGGA 60.976 55.000 0.00 0.00 34.76 4.81
198 199 0.107456 ATGCATAGCAACGAGAGGGG 59.893 55.000 0.00 0.00 43.62 4.79
199 200 1.202568 TGATGCATAGCAACGAGAGGG 60.203 52.381 0.00 0.00 43.62 4.30
200 201 1.863454 GTGATGCATAGCAACGAGAGG 59.137 52.381 0.00 0.00 43.62 3.69
201 202 1.863454 GGTGATGCATAGCAACGAGAG 59.137 52.381 0.00 0.00 43.62 3.20
202 203 1.206849 TGGTGATGCATAGCAACGAGA 59.793 47.619 0.00 0.00 43.62 4.04
203 204 1.655484 TGGTGATGCATAGCAACGAG 58.345 50.000 0.00 0.00 43.62 4.18
204 205 1.941975 CATGGTGATGCATAGCAACGA 59.058 47.619 0.00 0.00 43.62 3.85
205 206 1.941975 TCATGGTGATGCATAGCAACG 59.058 47.619 0.00 1.35 43.62 4.10
206 207 3.819337 AGATCATGGTGATGCATAGCAAC 59.181 43.478 0.00 0.00 43.62 4.17
207 208 4.094830 AGATCATGGTGATGCATAGCAA 57.905 40.909 0.00 0.00 43.62 3.91
208 209 3.782656 AGATCATGGTGATGCATAGCA 57.217 42.857 0.00 4.86 44.86 3.49
209 210 3.366070 GCAAGATCATGGTGATGCATAGC 60.366 47.826 0.00 0.00 37.20 2.97
210 211 3.120304 CGCAAGATCATGGTGATGCATAG 60.120 47.826 0.00 0.00 37.20 2.23
211 212 2.809696 CGCAAGATCATGGTGATGCATA 59.190 45.455 0.00 0.00 37.20 3.14
212 213 1.607148 CGCAAGATCATGGTGATGCAT 59.393 47.619 0.00 0.00 37.20 3.96
213 214 1.018910 CGCAAGATCATGGTGATGCA 58.981 50.000 11.83 0.00 37.20 3.96
214 215 1.019673 ACGCAAGATCATGGTGATGC 58.980 50.000 0.00 3.06 37.20 3.91
215 216 2.011947 ACACGCAAGATCATGGTGATG 58.988 47.619 19.56 8.58 37.20 3.07
216 217 2.011947 CACACGCAAGATCATGGTGAT 58.988 47.619 19.56 0.00 40.34 3.06
217 218 1.441738 CACACGCAAGATCATGGTGA 58.558 50.000 19.56 0.00 43.62 4.02
218 219 0.179181 GCACACGCAAGATCATGGTG 60.179 55.000 14.17 14.17 43.62 4.17
219 220 1.638388 CGCACACGCAAGATCATGGT 61.638 55.000 0.00 0.00 43.62 3.55
220 221 1.061411 CGCACACGCAAGATCATGG 59.939 57.895 0.00 0.00 43.62 3.66
221 222 0.998669 TACGCACACGCAAGATCATG 59.001 50.000 0.00 0.00 45.53 3.07
222 223 1.280982 CTACGCACACGCAAGATCAT 58.719 50.000 0.00 0.00 45.53 2.45
223 224 0.735978 CCTACGCACACGCAAGATCA 60.736 55.000 0.00 0.00 45.53 2.92
224 225 0.457853 TCCTACGCACACGCAAGATC 60.458 55.000 0.00 0.00 45.53 2.75
225 226 0.037697 TTCCTACGCACACGCAAGAT 60.038 50.000 0.00 0.00 45.53 2.40
226 227 0.037697 ATTCCTACGCACACGCAAGA 60.038 50.000 0.00 0.00 45.53 3.02
227 228 0.796312 AATTCCTACGCACACGCAAG 59.204 50.000 0.00 0.00 45.53 4.01
228 229 0.515127 CAATTCCTACGCACACGCAA 59.485 50.000 0.00 0.00 45.53 4.85
229 230 0.601576 ACAATTCCTACGCACACGCA 60.602 50.000 0.00 0.00 45.53 5.24
230 231 0.515564 AACAATTCCTACGCACACGC 59.484 50.000 0.00 0.00 45.53 5.34
232 233 4.217754 TCAAAACAATTCCTACGCACAC 57.782 40.909 0.00 0.00 0.00 3.82
233 234 4.902443 TTCAAAACAATTCCTACGCACA 57.098 36.364 0.00 0.00 0.00 4.57
234 235 6.763303 AATTTCAAAACAATTCCTACGCAC 57.237 33.333 0.00 0.00 0.00 5.34
235 236 7.653647 AGTAATTTCAAAACAATTCCTACGCA 58.346 30.769 0.00 0.00 0.00 5.24
236 237 9.058424 GTAGTAATTTCAAAACAATTCCTACGC 57.942 33.333 0.00 0.00 29.00 4.42
237 238 9.257865 CGTAGTAATTTCAAAACAATTCCTACG 57.742 33.333 12.89 12.89 43.71 3.51
238 239 9.058424 GCGTAGTAATTTCAAAACAATTCCTAC 57.942 33.333 0.00 0.00 33.15 3.18
239 240 8.238631 GGCGTAGTAATTTCAAAACAATTCCTA 58.761 33.333 0.00 0.00 0.00 2.94
240 241 7.088272 GGCGTAGTAATTTCAAAACAATTCCT 58.912 34.615 0.00 0.00 0.00 3.36
241 242 6.033091 CGGCGTAGTAATTTCAAAACAATTCC 59.967 38.462 0.00 0.00 0.00 3.01
242 243 6.451960 GCGGCGTAGTAATTTCAAAACAATTC 60.452 38.462 9.37 0.00 0.00 2.17
243 244 5.343860 GCGGCGTAGTAATTTCAAAACAATT 59.656 36.000 9.37 0.00 0.00 2.32
244 245 4.854839 GCGGCGTAGTAATTTCAAAACAAT 59.145 37.500 9.37 0.00 0.00 2.71
245 246 4.220572 GCGGCGTAGTAATTTCAAAACAA 58.779 39.130 9.37 0.00 0.00 2.83
246 247 3.365164 GGCGGCGTAGTAATTTCAAAACA 60.365 43.478 9.37 0.00 0.00 2.83
247 248 3.165890 GGCGGCGTAGTAATTTCAAAAC 58.834 45.455 9.37 0.00 0.00 2.43
248 249 2.812591 TGGCGGCGTAGTAATTTCAAAA 59.187 40.909 9.37 0.00 0.00 2.44
249 250 2.424557 TGGCGGCGTAGTAATTTCAAA 58.575 42.857 9.37 0.00 0.00 2.69
250 251 2.096220 TGGCGGCGTAGTAATTTCAA 57.904 45.000 9.37 0.00 0.00 2.69
251 252 2.206750 GATGGCGGCGTAGTAATTTCA 58.793 47.619 9.37 0.00 0.00 2.69
252 253 1.529865 GGATGGCGGCGTAGTAATTTC 59.470 52.381 9.37 0.00 0.00 2.17
253 254 1.140252 AGGATGGCGGCGTAGTAATTT 59.860 47.619 9.37 0.00 0.00 1.82
254 255 0.756903 AGGATGGCGGCGTAGTAATT 59.243 50.000 9.37 0.00 0.00 1.40
255 256 0.317479 GAGGATGGCGGCGTAGTAAT 59.683 55.000 9.37 0.00 0.00 1.89
256 257 1.038681 TGAGGATGGCGGCGTAGTAA 61.039 55.000 9.37 0.00 0.00 2.24
257 258 1.454295 TGAGGATGGCGGCGTAGTA 60.454 57.895 9.37 0.00 0.00 1.82
258 259 2.758327 TGAGGATGGCGGCGTAGT 60.758 61.111 9.37 0.00 0.00 2.73
259 260 2.279517 GTGAGGATGGCGGCGTAG 60.280 66.667 9.37 0.00 0.00 3.51
260 261 3.845259 GGTGAGGATGGCGGCGTA 61.845 66.667 9.37 0.00 0.00 4.42
279 280 7.969536 AGGATGTTCATCGTCTTAATTATGG 57.030 36.000 6.70 0.00 33.00 2.74
286 287 6.070424 AGGGTTTTAGGATGTTCATCGTCTTA 60.070 38.462 10.56 0.00 33.00 2.10
300 301 4.530875 CCTCGTAGTCTAGGGTTTTAGGA 58.469 47.826 0.00 0.00 0.00 2.94
337 338 1.069935 TCGCCGGATCAACACACAA 59.930 52.632 5.05 0.00 0.00 3.33
340 341 1.080093 GAGTCGCCGGATCAACACA 60.080 57.895 5.05 0.00 0.00 3.72
342 343 2.577059 GGAGTCGCCGGATCAACA 59.423 61.111 5.05 0.00 0.00 3.33
345 346 4.458829 AGGGGAGTCGCCGGATCA 62.459 66.667 19.66 0.00 41.60 2.92
379 380 1.227089 CTCCCATCAGCCGACGAAG 60.227 63.158 0.00 0.00 0.00 3.79
380 381 2.892640 CTCCCATCAGCCGACGAA 59.107 61.111 0.00 0.00 0.00 3.85
389 390 3.473647 CTCCAGCGGCTCCCATCA 61.474 66.667 0.00 0.00 0.00 3.07
469 479 6.655003 GTCTGTTTCCACCTGAATATTTCTCA 59.345 38.462 0.00 0.00 31.67 3.27
650 687 2.731968 GCCCAAACGATGCTAATGTGTG 60.732 50.000 0.00 0.00 0.00 3.82
653 690 1.102978 GGCCCAAACGATGCTAATGT 58.897 50.000 0.00 0.00 0.00 2.71
705 743 6.112734 GCCATCCGAACCATTACATCATATA 58.887 40.000 0.00 0.00 0.00 0.86
708 746 3.149196 GCCATCCGAACCATTACATCAT 58.851 45.455 0.00 0.00 0.00 2.45
750 788 5.177696 GGAACAGCCGATTCTATAATCACAC 59.822 44.000 2.22 0.00 41.44 3.82
807 848 1.338579 GCCATATACTCTCAGCCCAGC 60.339 57.143 0.00 0.00 0.00 4.85
815 856 3.924918 TCTTGCGAGCCATATACTCTC 57.075 47.619 0.00 0.00 31.71 3.20
816 857 7.831691 ATATATCTTGCGAGCCATATACTCT 57.168 36.000 0.00 0.00 31.71 3.24
829 870 6.145338 AGACGGGGTTATATATATCTTGCG 57.855 41.667 0.00 0.00 0.00 4.85
842 883 3.198417 GGTTTCTATGGAAGACGGGGTTA 59.802 47.826 0.00 0.00 32.51 2.85
843 884 2.026542 GGTTTCTATGGAAGACGGGGTT 60.027 50.000 0.00 0.00 32.51 4.11
844 885 1.558294 GGTTTCTATGGAAGACGGGGT 59.442 52.381 0.00 0.00 32.51 4.95
845 886 1.134189 GGGTTTCTATGGAAGACGGGG 60.134 57.143 0.00 0.00 32.51 5.73
856 897 5.011533 CAGATTGGATCGAGAGGGTTTCTAT 59.988 44.000 0.00 0.00 35.87 1.98
865 906 1.950216 TCGACCAGATTGGATCGAGAG 59.050 52.381 14.37 0.00 40.96 3.20
867 908 2.871182 TTCGACCAGATTGGATCGAG 57.129 50.000 16.35 0.00 43.78 4.04
868 909 2.758423 TCTTTCGACCAGATTGGATCGA 59.242 45.455 14.37 14.37 40.96 3.59
869 910 3.165058 TCTTTCGACCAGATTGGATCG 57.835 47.619 1.40 7.72 40.96 3.69
892 933 2.048222 TTGTCTGCTTCCGGCGAG 60.048 61.111 9.30 0.00 45.43 5.03
907 948 2.738521 CACCCTCGTCGGTGCTTG 60.739 66.667 10.07 0.00 46.52 4.01
917 958 4.557205 GGTAGTTATATGCTTCACCCTCG 58.443 47.826 0.00 0.00 0.00 4.63
918 959 4.280174 TCGGTAGTTATATGCTTCACCCTC 59.720 45.833 0.00 0.00 0.00 4.30
919 960 4.220724 TCGGTAGTTATATGCTTCACCCT 58.779 43.478 0.00 0.00 0.00 4.34
921 962 4.557205 CCTCGGTAGTTATATGCTTCACC 58.443 47.826 0.00 0.00 0.00 4.02
923 964 3.305131 CGCCTCGGTAGTTATATGCTTCA 60.305 47.826 0.00 0.00 0.00 3.02
930 984 3.225104 ACCAATCGCCTCGGTAGTTATA 58.775 45.455 0.00 0.00 0.00 0.98
1027 1083 2.159240 CCATCTCGTCATCGACTTCCAA 60.159 50.000 0.00 0.00 41.35 3.53
1035 1091 2.575363 CGTATGTCCATCTCGTCATCG 58.425 52.381 0.00 0.00 38.55 3.84
1051 1107 0.963856 TCCTCGGCCGATATGCGTAT 60.964 55.000 31.19 0.00 38.67 3.06
1054 1110 2.022129 GTTCCTCGGCCGATATGCG 61.022 63.158 31.19 16.77 40.47 4.73
1058 1114 1.407979 GAAGAAGTTCCTCGGCCGATA 59.592 52.381 31.19 17.72 0.00 2.92
1075 1131 1.001158 GTAGGATTCGAGCTCCGGAAG 60.001 57.143 5.23 0.46 37.88 3.46
1092 1148 0.792640 CTTTGAGCACCTGCACGTAG 59.207 55.000 0.00 0.00 45.16 3.51
1094 1150 0.463654 TTCTTTGAGCACCTGCACGT 60.464 50.000 0.00 0.00 45.16 4.49
1095 1151 0.236711 CTTCTTTGAGCACCTGCACG 59.763 55.000 0.00 0.00 45.16 5.34
1098 1154 1.597742 TCACTTCTTTGAGCACCTGC 58.402 50.000 0.00 0.00 42.49 4.85
1114 1170 1.227943 TGTGTCTGCCTGCCTTCAC 60.228 57.895 0.00 0.00 0.00 3.18
1117 1173 2.116983 ATCGTGTGTCTGCCTGCCTT 62.117 55.000 0.00 0.00 0.00 4.35
1159 1215 4.154195 GCACATTACCGACAACTCTTGAAT 59.846 41.667 0.00 0.00 0.00 2.57
1162 1218 2.159627 GGCACATTACCGACAACTCTTG 59.840 50.000 0.00 0.00 0.00 3.02
1187 1243 6.358118 TGCTACGAATCGCTTCATTTATTT 57.642 33.333 1.15 0.00 0.00 1.40
1191 1247 3.546815 GCATGCTACGAATCGCTTCATTT 60.547 43.478 11.37 0.00 0.00 2.32
1193 1249 1.528586 GCATGCTACGAATCGCTTCAT 59.471 47.619 11.37 0.29 0.00 2.57
1208 1264 1.434696 CGGGGAAGAATGTGCATGC 59.565 57.895 11.82 11.82 0.00 4.06
1236 1292 0.466739 GATCACCATGCTGGATGCCA 60.467 55.000 3.33 0.00 40.96 4.92
1237 1293 0.466739 TGATCACCATGCTGGATGCC 60.467 55.000 3.33 0.00 40.96 4.40
1238 1294 0.952280 CTGATCACCATGCTGGATGC 59.048 55.000 3.33 0.00 40.96 3.91
1240 1296 0.549469 TGCTGATCACCATGCTGGAT 59.451 50.000 8.91 0.00 40.96 3.41
1241 1297 0.393402 GTGCTGATCACCATGCTGGA 60.393 55.000 8.91 0.00 40.96 3.86
1242 1298 0.678684 TGTGCTGATCACCATGCTGG 60.679 55.000 6.27 1.16 45.03 4.85
1245 1301 0.384309 CCATGTGCTGATCACCATGC 59.616 55.000 15.19 8.27 45.03 4.06
1247 1303 1.749635 GCTCCATGTGCTGATCACCAT 60.750 52.381 0.00 0.00 45.03 3.55
1249 1305 0.107312 AGCTCCATGTGCTGATCACC 60.107 55.000 9.27 0.00 45.03 4.02
1260 1316 0.325933 TGTTCACCTCCAGCTCCATG 59.674 55.000 0.00 0.00 0.00 3.66
1261 1317 1.004044 CTTGTTCACCTCCAGCTCCAT 59.996 52.381 0.00 0.00 0.00 3.41
1262 1318 0.397941 CTTGTTCACCTCCAGCTCCA 59.602 55.000 0.00 0.00 0.00 3.86
1263 1319 0.957888 GCTTGTTCACCTCCAGCTCC 60.958 60.000 0.00 0.00 0.00 4.70
1264 1320 0.250467 TGCTTGTTCACCTCCAGCTC 60.250 55.000 0.00 0.00 0.00 4.09
1265 1321 0.250640 CTGCTTGTTCACCTCCAGCT 60.251 55.000 0.00 0.00 0.00 4.24
1272 1328 1.265365 GTCTGCTTCTGCTTGTTCACC 59.735 52.381 0.00 0.00 40.48 4.02
1292 1348 2.163509 AGTCCATATCGTCCTCCATCG 58.836 52.381 0.00 0.00 0.00 3.84
1296 1352 2.231721 GCCTAAGTCCATATCGTCCTCC 59.768 54.545 0.00 0.00 0.00 4.30
1299 1355 1.884579 TCGCCTAAGTCCATATCGTCC 59.115 52.381 0.00 0.00 0.00 4.79
1307 1363 1.143183 GCCGATTCGCCTAAGTCCA 59.857 57.895 0.00 0.00 0.00 4.02
1316 1372 1.305201 TAATTCTTGGGCCGATTCGC 58.695 50.000 0.00 0.00 0.00 4.70
1321 1377 2.374184 CATGGTTAATTCTTGGGCCGA 58.626 47.619 0.00 0.00 0.00 5.54
1328 1384 4.540099 TGACCTCCTCCATGGTTAATTCTT 59.460 41.667 12.58 0.00 36.59 2.52
1349 1405 4.161295 CTTCCTCGGCCGCCATGA 62.161 66.667 23.51 11.04 0.00 3.07
1350 1406 4.161295 TCTTCCTCGGCCGCCATG 62.161 66.667 23.51 10.27 0.00 3.66
1363 1419 4.116238 CTGTAGGAAGCGAAATCCTCTTC 58.884 47.826 7.28 0.00 44.01 2.87
1379 1435 0.984230 TTCCCAGCCACTTCTGTAGG 59.016 55.000 0.00 0.00 32.32 3.18
1391 1447 1.734655 TCCCCATCTAGATTCCCAGC 58.265 55.000 1.33 0.00 0.00 4.85
1439 1495 0.164647 GCATGTCAACTCACTCGTGC 59.835 55.000 0.00 0.00 36.06 5.34
1486 1542 7.471539 CGGGAAGGAAATGAGAAGTAGCTATTA 60.472 40.741 0.00 0.00 0.00 0.98
1487 1543 6.596621 GGGAAGGAAATGAGAAGTAGCTATT 58.403 40.000 0.00 0.00 0.00 1.73
1488 1544 5.221541 CGGGAAGGAAATGAGAAGTAGCTAT 60.222 44.000 0.00 0.00 0.00 2.97
1499 1555 4.763279 GGTAAAAGAACGGGAAGGAAATGA 59.237 41.667 0.00 0.00 0.00 2.57
1510 1566 3.132925 TCGACCAAAGGTAAAAGAACGG 58.867 45.455 0.00 0.00 35.25 4.44
1527 1583 5.692654 GCTTATAGAAGGAAGGTCAATCGAC 59.307 44.000 0.00 0.00 35.89 4.20
1530 1586 5.468409 GCAGCTTATAGAAGGAAGGTCAATC 59.532 44.000 0.00 0.00 31.20 2.67
1531 1587 5.104360 TGCAGCTTATAGAAGGAAGGTCAAT 60.104 40.000 0.00 0.00 31.20 2.57
1535 1591 4.384647 CCTTGCAGCTTATAGAAGGAAGGT 60.385 45.833 9.31 0.00 36.09 3.50
1554 1610 1.001181 CAGTGCAAACCCATTCCCTTG 59.999 52.381 0.00 0.00 0.00 3.61
1582 1638 9.810545 GAAATCTAACAAGAACTAGTGCTAGAT 57.189 33.333 3.01 5.94 35.61 1.98
1583 1639 9.026121 AGAAATCTAACAAGAACTAGTGCTAGA 57.974 33.333 3.01 3.55 36.97 2.43
1634 1690 1.987770 GAACTCAATTGCGTTGCATGG 59.012 47.619 18.03 0.00 38.76 3.66
1641 1697 0.168788 CGCATGGAACTCAATTGCGT 59.831 50.000 0.00 0.00 44.89 5.24
1660 1716 2.656560 AGGTGTCGAGTATGTGAAGC 57.343 50.000 0.00 0.00 0.00 3.86
1668 1724 1.547372 GCTGGGTTTAGGTGTCGAGTA 59.453 52.381 0.00 0.00 0.00 2.59
1672 1728 2.232941 TCTAAGCTGGGTTTAGGTGTCG 59.767 50.000 0.00 0.00 29.47 4.35
1729 1785 7.273381 CGCCTTTAATTTCTGTGAGTTTAATGG 59.727 37.037 0.00 0.00 33.52 3.16
1737 1793 2.749621 AGCCGCCTTTAATTTCTGTGAG 59.250 45.455 0.00 0.00 0.00 3.51
1740 1796 2.161609 CGAAGCCGCCTTTAATTTCTGT 59.838 45.455 0.00 0.00 0.00 3.41
1741 1797 2.418628 TCGAAGCCGCCTTTAATTTCTG 59.581 45.455 0.00 0.00 35.37 3.02
1758 1814 1.811965 CACAGACAATGGCCATTCGAA 59.188 47.619 28.42 0.00 0.00 3.71
1769 1825 5.865085 ACAACTACACCATACACAGACAAT 58.135 37.500 0.00 0.00 0.00 2.71
1774 1830 3.188460 GGCAACAACTACACCATACACAG 59.812 47.826 0.00 0.00 0.00 3.66
1787 1843 2.840753 ATGGTCCCGGGCAACAACT 61.841 57.895 18.49 0.00 39.74 3.16
1792 1848 2.148723 ATCAACATGGTCCCGGGCAA 62.149 55.000 18.49 4.75 0.00 4.52
1804 1860 3.084039 AGGTTGCGATTGTGATCAACAT 58.916 40.909 0.00 0.00 40.20 2.71
1805 1861 2.503331 AGGTTGCGATTGTGATCAACA 58.497 42.857 0.00 0.00 40.20 3.33
1833 1889 2.509336 CCTTGCCCTACTGCGACG 60.509 66.667 0.00 0.00 0.00 5.12
1836 1892 2.125106 GGTCCTTGCCCTACTGCG 60.125 66.667 0.00 0.00 0.00 5.18
1852 1908 1.135517 CGTTTTGCCGGACTATTTGGG 60.136 52.381 5.05 0.00 0.00 4.12
1864 1920 6.725246 AGCAAAGATATACATACGTTTTGCC 58.275 36.000 19.36 7.15 45.92 4.52
1899 1955 3.448301 CAGCAGCAATATTCCCCAAAAGA 59.552 43.478 0.00 0.00 0.00 2.52
1948 2004 9.823647 CATTAACTACTAATCAACCAGAGATGT 57.176 33.333 0.00 0.00 0.00 3.06
1956 2012 7.083875 TGCAAGCATTAACTACTAATCAACC 57.916 36.000 0.00 0.00 0.00 3.77
2081 2156 7.436118 GTCTTGCTGATCAATTCTCTATCTCT 58.564 38.462 0.00 0.00 33.57 3.10
2091 2166 2.161012 CAGTGCGTCTTGCTGATCAATT 59.839 45.455 0.00 0.00 46.63 2.32
2164 2239 6.183360 GCTCCATGCACAACTCTATTTTACAT 60.183 38.462 0.00 0.00 42.31 2.29
2199 2274 0.734889 GATTGTGGCCTGGATTGTCG 59.265 55.000 3.32 0.00 0.00 4.35
2203 2278 0.040058 TGCAGATTGTGGCCTGGATT 59.960 50.000 3.32 0.00 0.00 3.01
2236 2311 0.179468 GCTGCCGTATCCCCTGTTTA 59.821 55.000 0.00 0.00 0.00 2.01
2315 2393 4.581409 AGCAACATAAGTGGTTTTACCGTT 59.419 37.500 0.00 0.00 42.58 4.44
2327 2405 5.530171 CAGATGAGGCATTAGCAACATAAGT 59.470 40.000 0.00 0.00 44.61 2.24
2401 2479 4.553330 TGACAGATCAAGGTAACCTTCC 57.447 45.455 0.00 0.00 42.67 3.46
2645 2723 3.702792 TCACTGGTTGGAGGTTTCAAAA 58.297 40.909 0.00 0.00 0.00 2.44
2660 2738 3.743521 TGAGATCCTTGTTGTTCACTGG 58.256 45.455 0.00 0.00 0.00 4.00
2674 2752 1.415659 CCCACCAGTCTCATGAGATCC 59.584 57.143 27.51 16.00 39.97 3.36
2695 2773 4.874966 TCAAGTAAACGGAGGTTTCGAAAA 59.125 37.500 13.10 0.00 44.91 2.29
2699 2777 4.053295 TCTTCAAGTAAACGGAGGTTTCG 58.947 43.478 0.00 0.00 44.91 3.46
2732 2810 3.769201 AGCTTTGCTTGGTCCAGC 58.231 55.556 6.41 6.41 33.89 4.85
2741 2819 2.561419 AGCACATCATCAAAGCTTTGCT 59.439 40.909 30.35 20.79 42.56 3.91
2742 2820 2.955614 AGCACATCATCAAAGCTTTGC 58.044 42.857 30.35 18.89 38.05 3.68
2743 2821 4.621460 CAGAAGCACATCATCAAAGCTTTG 59.379 41.667 29.53 29.53 44.73 2.77
2744 2822 4.280174 ACAGAAGCACATCATCAAAGCTTT 59.720 37.500 5.69 5.69 44.73 3.51
2746 2824 3.418995 ACAGAAGCACATCATCAAAGCT 58.581 40.909 0.00 0.00 37.08 3.74
2747 2825 3.427233 GGACAGAAGCACATCATCAAAGC 60.427 47.826 0.00 0.00 0.00 3.51
2748 2826 3.181513 CGGACAGAAGCACATCATCAAAG 60.182 47.826 0.00 0.00 0.00 2.77
2749 2827 2.743664 CGGACAGAAGCACATCATCAAA 59.256 45.455 0.00 0.00 0.00 2.69
2750 2828 2.349590 CGGACAGAAGCACATCATCAA 58.650 47.619 0.00 0.00 0.00 2.57
2751 2829 1.405933 CCGGACAGAAGCACATCATCA 60.406 52.381 0.00 0.00 0.00 3.07
2752 2830 1.293924 CCGGACAGAAGCACATCATC 58.706 55.000 0.00 0.00 0.00 2.92
2753 2831 0.615331 ACCGGACAGAAGCACATCAT 59.385 50.000 9.46 0.00 0.00 2.45
2754 2832 0.037326 GACCGGACAGAAGCACATCA 60.037 55.000 9.46 0.00 0.00 3.07
2755 2833 0.247736 AGACCGGACAGAAGCACATC 59.752 55.000 9.46 0.00 0.00 3.06
2756 2834 0.036952 CAGACCGGACAGAAGCACAT 60.037 55.000 9.46 0.00 0.00 3.21
2757 2835 1.367471 CAGACCGGACAGAAGCACA 59.633 57.895 9.46 0.00 0.00 4.57
2758 2836 0.249911 AACAGACCGGACAGAAGCAC 60.250 55.000 9.46 0.00 0.00 4.40
2759 2837 0.033504 GAACAGACCGGACAGAAGCA 59.966 55.000 9.46 0.00 0.00 3.91
2760 2838 0.033504 TGAACAGACCGGACAGAAGC 59.966 55.000 9.46 0.00 0.00 3.86
2761 2839 2.135933 GTTGAACAGACCGGACAGAAG 58.864 52.381 9.46 0.00 0.00 2.85
2762 2840 1.760613 AGTTGAACAGACCGGACAGAA 59.239 47.619 9.46 0.00 0.00 3.02
2763 2841 1.068588 CAGTTGAACAGACCGGACAGA 59.931 52.381 9.46 0.00 0.00 3.41
2764 2842 1.202533 ACAGTTGAACAGACCGGACAG 60.203 52.381 9.46 0.00 0.00 3.51
2765 2843 0.828022 ACAGTTGAACAGACCGGACA 59.172 50.000 9.46 0.00 0.00 4.02
2766 2844 1.217882 CACAGTTGAACAGACCGGAC 58.782 55.000 9.46 0.10 0.00 4.79
2767 2845 0.105964 CCACAGTTGAACAGACCGGA 59.894 55.000 9.46 0.00 0.00 5.14
2768 2846 0.105964 TCCACAGTTGAACAGACCGG 59.894 55.000 0.00 0.00 0.00 5.28
2769 2847 1.867233 CTTCCACAGTTGAACAGACCG 59.133 52.381 0.00 0.00 0.00 4.79
2770 2848 2.872858 GACTTCCACAGTTGAACAGACC 59.127 50.000 0.00 0.00 35.01 3.85
2771 2849 2.540101 CGACTTCCACAGTTGAACAGAC 59.460 50.000 0.00 0.00 39.12 3.51
2772 2850 2.167693 ACGACTTCCACAGTTGAACAGA 59.832 45.455 0.00 0.00 39.12 3.41
2773 2851 2.285220 CACGACTTCCACAGTTGAACAG 59.715 50.000 0.00 0.00 39.12 3.16
2774 2852 2.276201 CACGACTTCCACAGTTGAACA 58.724 47.619 0.00 0.00 39.12 3.18
2775 2853 1.003866 GCACGACTTCCACAGTTGAAC 60.004 52.381 0.00 0.00 39.12 3.18
2776 2854 1.295792 GCACGACTTCCACAGTTGAA 58.704 50.000 0.00 0.00 39.12 2.69
2777 2855 0.176910 TGCACGACTTCCACAGTTGA 59.823 50.000 0.00 0.00 39.12 3.18
2778 2856 0.583438 CTGCACGACTTCCACAGTTG 59.417 55.000 0.00 0.00 42.28 3.16
2779 2857 0.532862 CCTGCACGACTTCCACAGTT 60.533 55.000 0.00 0.00 35.01 3.16
2780 2858 1.069765 CCTGCACGACTTCCACAGT 59.930 57.895 0.00 0.00 39.07 3.55
2781 2859 0.946221 GTCCTGCACGACTTCCACAG 60.946 60.000 8.41 0.00 0.00 3.66
2782 2860 1.069090 GTCCTGCACGACTTCCACA 59.931 57.895 8.41 0.00 0.00 4.17
2783 2861 1.668151 GGTCCTGCACGACTTCCAC 60.668 63.158 14.30 0.00 33.07 4.02
2784 2862 1.691195 TTGGTCCTGCACGACTTCCA 61.691 55.000 14.30 3.16 33.07 3.53
2785 2863 0.951040 CTTGGTCCTGCACGACTTCC 60.951 60.000 14.30 0.72 33.07 3.46
2786 2864 1.569479 GCTTGGTCCTGCACGACTTC 61.569 60.000 14.30 1.43 33.07 3.01
2787 2865 1.598130 GCTTGGTCCTGCACGACTT 60.598 57.895 14.30 0.00 33.07 3.01
2788 2866 2.031163 GCTTGGTCCTGCACGACT 59.969 61.111 14.30 0.00 33.07 4.18
2789 2867 1.444119 TTTGCTTGGTCCTGCACGAC 61.444 55.000 7.25 7.25 39.05 4.34
2790 2868 1.153066 TTTGCTTGGTCCTGCACGA 60.153 52.632 9.17 0.71 39.05 4.35
2791 2869 1.165907 TCTTTGCTTGGTCCTGCACG 61.166 55.000 9.17 5.12 39.05 5.34
2810 2888 5.713389 ACTGAATGGACACACATCATCAAAT 59.287 36.000 0.00 0.00 0.00 2.32
2844 2984 7.035612 CAGCATATACCTAATCGATAGCACAA 58.964 38.462 0.00 0.00 0.00 3.33
2860 3000 5.178797 ACAGTTGGACACTTCAGCATATAC 58.821 41.667 0.00 0.00 30.92 1.47
2960 4752 3.708890 TGTACAGTCTACACAAACCACG 58.291 45.455 0.00 0.00 0.00 4.94
2967 4759 5.784578 ACATGAGTTGTACAGTCTACACA 57.215 39.130 0.00 0.00 36.57 3.72
3159 4952 8.591940 GTTACTTCTAAAAGGAAGAGGTAGGAA 58.408 37.037 10.60 0.00 43.70 3.36
3160 4953 7.954620 AGTTACTTCTAAAAGGAAGAGGTAGGA 59.045 37.037 10.60 0.00 43.70 2.94
3178 4971 9.269453 GGGTACATATCCAACATTAGTTACTTC 57.731 37.037 0.00 0.00 35.85 3.01
3186 4979 8.593679 CATGTCTAGGGTACATATCCAACATTA 58.406 37.037 0.00 0.00 35.82 1.90
3197 4990 4.554553 AGGGTACATGTCTAGGGTACAT 57.445 45.455 0.00 4.23 39.24 2.29
3203 4996 5.713792 CATGTCTAGGGTACATGTCTAGG 57.286 47.826 16.12 1.80 45.91 3.02
3210 5003 4.078805 TCCAGGTACATGTCTAGGGTACAT 60.079 45.833 0.00 4.23 39.24 2.29
3211 5004 3.270169 TCCAGGTACATGTCTAGGGTACA 59.730 47.826 0.00 2.31 39.24 2.90
3212 5005 3.635836 GTCCAGGTACATGTCTAGGGTAC 59.364 52.174 0.00 0.00 37.30 3.34
3213 5006 3.530564 AGTCCAGGTACATGTCTAGGGTA 59.469 47.826 0.00 0.00 0.00 3.69
3214 5007 2.315155 AGTCCAGGTACATGTCTAGGGT 59.685 50.000 0.00 0.00 0.00 4.34
3215 5008 3.033659 AGTCCAGGTACATGTCTAGGG 57.966 52.381 0.00 0.42 0.00 3.53
3256 5049 6.455646 GCCTATTCACGAACTTTGATACTGTG 60.456 42.308 0.00 0.00 0.00 3.66
3279 5072 5.459536 AAAGAGAGAAACAAATGGAAGCC 57.540 39.130 0.00 0.00 0.00 4.35
3305 5098 7.393234 TGAAAGAATCTAACCACAATAACCAGG 59.607 37.037 0.00 0.00 0.00 4.45
3414 5207 3.550842 GGCAACTTGAAGATGGTCACAAC 60.551 47.826 0.00 0.00 0.00 3.32
3436 5229 6.183360 ACAAGTTTGTGTCCAGATACAACAAG 60.183 38.462 9.19 3.93 41.12 3.16
3578 5371 2.519013 GCTCCTTGAACCTGAAACCAT 58.481 47.619 0.00 0.00 0.00 3.55
3586 5379 1.915769 AGCGAGGCTCCTTGAACCT 60.916 57.895 9.32 0.00 30.62 3.50
3587 5380 2.665603 AGCGAGGCTCCTTGAACC 59.334 61.111 9.32 0.00 30.62 3.62
3597 5390 0.805711 GAAGAAGAGCTGAGCGAGGC 60.806 60.000 0.00 0.00 0.00 4.70
3598 5391 0.179113 GGAAGAAGAGCTGAGCGAGG 60.179 60.000 0.00 0.00 0.00 4.63
3601 5394 1.800805 TTTGGAAGAAGAGCTGAGCG 58.199 50.000 0.00 0.00 0.00 5.03


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.