Multiple sequence alignment - TraesCS4A01G299700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G299700 chr4A 100.000 5557 0 0 921 6477 597905176 597910732 0.000000e+00 10262.0
1 TraesCS4A01G299700 chr4A 100.000 515 0 0 1 515 597904256 597904770 0.000000e+00 952.0
2 TraesCS4A01G299700 chr4D 94.390 5116 178 50 921 5980 5597384 5592322 0.000000e+00 7757.0
3 TraesCS4A01G299700 chr4D 88.584 473 30 10 1099 1551 5599731 5599263 2.640000e-153 553.0
4 TraesCS4A01G299700 chr4D 79.088 373 34 15 156 513 29671889 29672232 3.930000e-52 217.0
5 TraesCS4A01G299700 chr4D 89.759 166 15 2 6271 6436 5591925 5591762 1.830000e-50 211.0
6 TraesCS4A01G299700 chr4D 94.815 135 4 2 921 1052 5600211 5600077 2.370000e-49 207.0
7 TraesCS4A01G299700 chrUn 94.177 4345 189 32 1631 5951 52076587 52072283 0.000000e+00 6564.0
8 TraesCS4A01G299700 chrUn 89.922 516 22 7 921 1419 52077103 52076601 7.080000e-179 638.0
9 TraesCS4A01G299700 chrUn 85.020 494 57 9 9 491 52077831 52077344 2.710000e-133 486.0
10 TraesCS4A01G299700 chrUn 85.167 209 21 3 6259 6467 52071915 52071717 8.510000e-49 206.0
11 TraesCS4A01G299700 chr6B 87.209 86 8 3 5967 6050 56918740 56918824 1.920000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G299700 chr4A 597904256 597910732 6476 False 5607.0 10262 100.0000 1 6477 2 chr4A.!!$F1 6476
1 TraesCS4A01G299700 chr4D 5591762 5600211 8449 True 2182.0 7757 91.8870 921 6436 4 chr4D.!!$R1 5515
2 TraesCS4A01G299700 chrUn 52071717 52077831 6114 True 1973.5 6564 88.5715 9 6467 4 chrUn.!!$R1 6458

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
390 393 0.250727 CGCAAAAAGGGAGAGGGTGA 60.251 55.000 0.00 0.0 0.00 4.02 F
409 412 0.252742 ATGGGGGAAGACGAAGGAGT 60.253 55.000 0.00 0.0 0.00 3.85 F
446 458 0.329261 CTGGATTGTGGGAGAGGCAA 59.671 55.000 0.00 0.0 0.00 4.52 F
2159 4108 0.393132 TGTTTCCGCCAGTCACACAA 60.393 50.000 0.00 0.0 0.00 3.33 F
2567 4519 0.038021 TGTAAGCTGCCTGGATGCAA 59.962 50.000 12.54 0.0 41.51 4.08 F
2809 4763 0.703488 TCCCTTGATCAACCATGCCA 59.297 50.000 3.38 0.0 0.00 4.92 F
4215 6195 2.417719 CTGGTAGCAGTTGTCTTGACC 58.582 52.381 13.89 0.0 0.00 4.02 F
5179 7159 0.606673 GTCTGGTCCCCAAAGCAGTC 60.607 60.000 3.36 0.0 43.57 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1740 3679 0.036010 AAATGCGGACCCTCTCACAG 60.036 55.000 0.0 0.0 0.00 3.66 R
1747 3686 0.625849 ATTCCAGAAATGCGGACCCT 59.374 50.000 0.0 0.0 0.00 4.34 R
2251 4200 3.620488 TCCAATACCAAGGCAAGCTAAG 58.380 45.455 0.0 0.0 0.00 2.18 R
3015 4970 0.179108 GACCCTCGCACTGATACACC 60.179 60.000 0.0 0.0 0.00 4.16 R
4215 6195 1.133025 CAATAGCCAAAACCAGCTCCG 59.867 52.381 0.0 0.0 40.56 4.63 R
4716 6696 0.816825 CGCCCCTGATGATGGACTTG 60.817 60.000 0.0 0.0 0.00 3.16 R
5317 7297 0.251787 ATTGGGCAAACTCTGGGGTC 60.252 55.000 0.0 0.0 0.00 4.46 R
6337 8732 0.476338 TCAGCCCAAGTGGTAAAGCA 59.524 50.000 0.0 0.0 36.04 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.162202 GACTAGGCGTAAAAGAGGACC 57.838 52.381 0.00 0.00 0.00 4.46
22 23 2.496470 ACTAGGCGTAAAAGAGGACCAG 59.504 50.000 0.00 0.00 0.00 4.00
24 25 2.532843 AGGCGTAAAAGAGGACCAGTA 58.467 47.619 0.00 0.00 0.00 2.74
80 81 3.500343 AGACAAGCAACCCTAGCAATTT 58.500 40.909 0.00 0.00 0.00 1.82
87 88 4.218417 AGCAACCCTAGCAATTTTACACTG 59.782 41.667 0.00 0.00 0.00 3.66
155 157 8.654230 AAATGTACACTGATCATAGTCATCAC 57.346 34.615 0.00 0.00 0.00 3.06
156 158 6.773976 TGTACACTGATCATAGTCATCACA 57.226 37.500 0.00 0.00 0.00 3.58
162 164 5.027293 TGATCATAGTCATCACAGGTTGG 57.973 43.478 0.00 0.00 0.00 3.77
165 167 3.118629 TCATAGTCATCACAGGTTGGCTC 60.119 47.826 0.00 0.00 31.46 4.70
172 174 1.879380 TCACAGGTTGGCTCAAAATCG 59.121 47.619 0.00 0.00 0.00 3.34
175 177 2.293399 ACAGGTTGGCTCAAAATCGAAC 59.707 45.455 0.00 0.00 0.00 3.95
182 184 2.536928 GGCTCAAAATCGAACCGAATCG 60.537 50.000 0.00 0.00 39.99 3.34
217 220 1.262417 AAAACCCTAATTGCCCCGTG 58.738 50.000 0.00 0.00 0.00 4.94
218 221 0.613572 AAACCCTAATTGCCCCGTGG 60.614 55.000 0.00 0.00 0.00 4.94
221 224 1.319614 CCCTAATTGCCCCGTGGTTG 61.320 60.000 0.00 0.00 0.00 3.77
237 240 2.050477 GTTGGCTTTCACAACATCCG 57.950 50.000 3.65 0.00 45.62 4.18
239 242 1.212751 GGCTTTCACAACATCCGCC 59.787 57.895 0.00 0.00 0.00 6.13
251 254 1.992277 ATCCGCCTGAAGCACTCCT 60.992 57.895 0.00 0.00 44.04 3.69
256 259 0.747255 GCCTGAAGCACTCCTCGATA 59.253 55.000 0.00 0.00 42.97 2.92
258 261 2.028130 CCTGAAGCACTCCTCGATAGT 58.972 52.381 0.00 0.00 37.40 2.12
262 265 4.461198 TGAAGCACTCCTCGATAGTCATA 58.539 43.478 0.00 0.00 37.40 2.15
268 271 6.266558 AGCACTCCTCGATAGTCATAAGATTT 59.733 38.462 0.00 0.00 37.40 2.17
269 272 6.364706 GCACTCCTCGATAGTCATAAGATTTG 59.635 42.308 0.00 0.00 37.40 2.32
276 279 5.333339 CGATAGTCATAAGATTTGGGCAACG 60.333 44.000 0.00 0.00 37.60 4.10
312 315 3.057548 CTTGCAGCACCGCCATGA 61.058 61.111 0.00 0.00 0.00 3.07
324 327 2.117156 GCCATGATCGCCTTGCAGT 61.117 57.895 0.00 0.00 0.00 4.40
337 340 2.970639 GCAGTAGCACGACCTGGA 59.029 61.111 0.00 0.00 41.58 3.86
341 344 0.393944 AGTAGCACGACCTGGATCGA 60.394 55.000 20.23 0.00 45.13 3.59
344 347 1.141881 GCACGACCTGGATCGACAT 59.858 57.895 20.23 1.57 45.13 3.06
347 350 0.741326 ACGACCTGGATCGACATCAG 59.259 55.000 20.23 0.00 45.13 2.90
357 360 2.229589 CGACATCAGCGAGCTCAGC 61.230 63.158 15.40 17.38 0.00 4.26
370 373 4.724602 TCAGCTGGCGACGTCTGC 62.725 66.667 21.82 21.82 32.40 4.26
378 381 2.629210 CGACGTCTGCCGCAAAAA 59.371 55.556 14.70 0.00 41.42 1.94
390 393 0.250727 CGCAAAAAGGGAGAGGGTGA 60.251 55.000 0.00 0.00 0.00 4.02
392 395 1.821136 GCAAAAAGGGAGAGGGTGATG 59.179 52.381 0.00 0.00 0.00 3.07
396 399 2.774351 GGGAGAGGGTGATGGGGG 60.774 72.222 0.00 0.00 0.00 5.40
401 404 0.621862 AGAGGGTGATGGGGGAAGAC 60.622 60.000 0.00 0.00 0.00 3.01
409 412 0.252742 ATGGGGGAAGACGAAGGAGT 60.253 55.000 0.00 0.00 0.00 3.85
414 417 1.192803 GGAAGACGAAGGAGTGGGGT 61.193 60.000 0.00 0.00 0.00 4.95
421 424 0.608308 GAAGGAGTGGGGTTTTCGGG 60.608 60.000 0.00 0.00 0.00 5.14
422 425 2.035155 GGAGTGGGGTTTTCGGGG 59.965 66.667 0.00 0.00 0.00 5.73
445 457 0.842030 ACTGGATTGTGGGAGAGGCA 60.842 55.000 0.00 0.00 0.00 4.75
446 458 0.329261 CTGGATTGTGGGAGAGGCAA 59.671 55.000 0.00 0.00 0.00 4.52
450 462 2.357569 GGATTGTGGGAGAGGCAAAGAT 60.358 50.000 0.00 0.00 0.00 2.40
453 465 0.462759 GTGGGAGAGGCAAAGATCGG 60.463 60.000 0.00 0.00 0.00 4.18
458 470 1.201429 AGAGGCAAAGATCGGTGGGT 61.201 55.000 1.54 0.00 0.00 4.51
962 2870 2.961522 TGAAGCGGCTTTCTTAAACG 57.038 45.000 17.51 0.00 0.00 3.60
1389 3320 0.544833 TCCCCAGGCCGTAACTGTTA 60.545 55.000 0.00 0.00 34.16 2.41
1394 3325 1.463444 CAGGCCGTAACTGTTAGTTGC 59.537 52.381 0.00 4.22 39.11 4.17
1401 3332 1.235724 AACTGTTAGTTGCGGCTTCC 58.764 50.000 0.00 0.00 37.00 3.46
1449 3386 4.699637 AGTTCGTTTGAGGTATTGTGTGA 58.300 39.130 0.00 0.00 0.00 3.58
1454 3391 4.084013 CGTTTGAGGTATTGTGTGACCTTC 60.084 45.833 0.00 0.00 46.36 3.46
1455 3392 4.974645 TTGAGGTATTGTGTGACCTTCT 57.025 40.909 0.00 0.00 46.36 2.85
1456 3393 4.974645 TGAGGTATTGTGTGACCTTCTT 57.025 40.909 0.00 0.00 46.36 2.52
1457 3394 6.428083 TTGAGGTATTGTGTGACCTTCTTA 57.572 37.500 0.00 0.00 46.36 2.10
1478 3415 6.324512 TCTTATTGGGCAAATATGTTCAGCAT 59.675 34.615 7.24 0.00 41.42 3.79
1485 3422 4.492895 GCAAATATGTTCAGCATTTTGCCG 60.493 41.667 16.26 0.00 46.52 5.69
1495 3432 1.725931 GCATTTTGCCGTCAGAACTCG 60.726 52.381 0.00 0.00 37.42 4.18
1512 3449 1.227556 CGTGATCCGGGGTCCATTC 60.228 63.158 4.51 0.00 0.00 2.67
1517 3456 3.809013 CCGGGGTCCATTCTGGGG 61.809 72.222 0.00 0.00 38.32 4.96
1562 3501 2.782615 GCAATACCGCACACCGTC 59.217 61.111 0.00 0.00 34.38 4.79
1590 3529 1.270465 GCATTGTTCTTGCTGCCCTTT 60.270 47.619 0.00 0.00 37.14 3.11
1591 3530 2.409975 CATTGTTCTTGCTGCCCTTTG 58.590 47.619 0.00 0.00 0.00 2.77
1734 3673 1.697394 TCCCTCATCCATGGGTGGG 60.697 63.158 24.94 22.08 46.06 4.61
1737 3676 0.855598 CCTCATCCATGGGTGGGATT 59.144 55.000 27.50 0.00 42.47 3.01
1740 3679 2.961062 CTCATCCATGGGTGGGATTTTC 59.039 50.000 21.35 0.00 42.47 2.29
1747 3686 2.061848 TGGGTGGGATTTTCTGTGAGA 58.938 47.619 0.00 0.00 0.00 3.27
1749 3688 2.619074 GGGTGGGATTTTCTGTGAGAGG 60.619 54.545 0.00 0.00 0.00 3.69
1750 3689 2.619074 GGTGGGATTTTCTGTGAGAGGG 60.619 54.545 0.00 0.00 0.00 4.30
1813 3752 7.584123 GCTACGCAAATCAAATACATGTTAGAG 59.416 37.037 2.30 0.00 0.00 2.43
1885 3824 4.098914 TGCTTTCATGGGTAAGTCTTGT 57.901 40.909 0.00 0.00 0.00 3.16
1894 3833 6.212589 TCATGGGTAAGTCTTGTATTGTCTGA 59.787 38.462 0.00 0.00 0.00 3.27
1895 3834 6.620877 TGGGTAAGTCTTGTATTGTCTGAT 57.379 37.500 0.00 0.00 0.00 2.90
1896 3835 7.016153 TGGGTAAGTCTTGTATTGTCTGATT 57.984 36.000 0.00 0.00 0.00 2.57
1897 3836 7.458397 TGGGTAAGTCTTGTATTGTCTGATTT 58.542 34.615 0.00 0.00 0.00 2.17
1898 3837 7.942341 TGGGTAAGTCTTGTATTGTCTGATTTT 59.058 33.333 0.00 0.00 0.00 1.82
1899 3838 8.793592 GGGTAAGTCTTGTATTGTCTGATTTTT 58.206 33.333 0.00 0.00 0.00 1.94
1945 3894 3.362304 GCAGCAAATTGAAGCAACTTTCG 60.362 43.478 0.00 0.00 0.00 3.46
2043 3992 2.862536 CGCAGTGAAGTCTCCATATGTG 59.137 50.000 1.24 0.00 0.00 3.21
2097 4046 5.337578 AGAAATCTACTGTCTTCAGCCTC 57.662 43.478 0.00 0.00 44.77 4.70
2159 4108 0.393132 TGTTTCCGCCAGTCACACAA 60.393 50.000 0.00 0.00 0.00 3.33
2163 4112 0.950836 TCCGCCAGTCACACAAATTG 59.049 50.000 0.00 0.00 0.00 2.32
2251 4200 1.375268 AGAGCTTCAGAAGTGGCGC 60.375 57.895 11.94 0.00 0.00 6.53
2558 4510 5.880054 TTCTTAAGTTCATGTAAGCTGCC 57.120 39.130 1.63 0.00 0.00 4.85
2567 4519 0.038021 TGTAAGCTGCCTGGATGCAA 59.962 50.000 12.54 0.00 41.51 4.08
2652 4604 2.905415 TGGCACCATGAGGATTCTTT 57.095 45.000 0.00 0.00 38.69 2.52
2653 4605 2.449464 TGGCACCATGAGGATTCTTTG 58.551 47.619 0.00 0.00 38.69 2.77
2654 4606 2.225091 TGGCACCATGAGGATTCTTTGT 60.225 45.455 0.00 0.00 38.69 2.83
2671 4623 8.970691 ATTCTTTGTGTTATATGCAAAGTGTC 57.029 30.769 16.65 0.00 45.31 3.67
2705 4659 8.622157 ACTTTTCTTAGCAAACCTAGAAACTTC 58.378 33.333 0.00 0.00 30.25 3.01
2753 4707 6.719370 AGTTATGCCCTGTAAACTTGATTTCA 59.281 34.615 0.00 0.00 0.00 2.69
2809 4763 0.703488 TCCCTTGATCAACCATGCCA 59.297 50.000 3.38 0.00 0.00 4.92
2822 4776 3.774734 ACCATGCCATAGTAGTATCCGA 58.225 45.455 0.00 0.00 0.00 4.55
2837 4792 6.585695 AGTATCCGAAGTTCTCTTGTACAA 57.414 37.500 8.28 8.28 33.64 2.41
3110 5065 8.851541 ACGGAATATTTTCTTGTAACTGGTAA 57.148 30.769 0.00 0.00 32.16 2.85
3158 5113 2.930682 GCATTTCTGACGAGGGAGTTAC 59.069 50.000 0.00 0.00 0.00 2.50
3378 5357 3.438216 TGCTGATGGAGAATTGGTTCA 57.562 42.857 0.00 0.00 36.79 3.18
3401 5380 5.696724 CACTTAATGTTCTGACCTCGTTCTT 59.303 40.000 0.00 0.00 0.00 2.52
3492 5471 8.525316 TCTGTGGTAAGTTTTCTATATCGTCAA 58.475 33.333 0.00 0.00 0.00 3.18
3822 5801 5.977635 TCATGGTATGATATCTAAAGGCCG 58.022 41.667 3.98 0.00 33.59 6.13
3978 5958 2.832129 GTGATGGACTGACCTAGTTCCA 59.168 50.000 0.00 0.00 40.53 3.53
4215 6195 2.417719 CTGGTAGCAGTTGTCTTGACC 58.582 52.381 13.89 0.00 0.00 4.02
4352 6332 2.930950 TGTTATGCAGGTGGGCTTATC 58.069 47.619 0.00 0.00 34.04 1.75
4671 6651 8.970691 AAACAATTAAATGTTCCTTCTCATCG 57.029 30.769 9.29 0.00 42.49 3.84
4699 6679 3.418684 ACTCAAGTATCACCCAACACC 57.581 47.619 0.00 0.00 0.00 4.16
4716 6696 2.266055 CCGCCAGGTCCAGTTCTC 59.734 66.667 0.00 0.00 0.00 2.87
4998 6978 1.146263 GCCTCGGTGGGTATCCTTG 59.854 63.158 0.00 0.00 36.00 3.61
5006 6986 2.116238 GTGGGTATCCTTGAGGCTACA 58.884 52.381 11.83 0.00 38.26 2.74
5032 7012 1.096386 CATCCCTGCTCTCTGCTTGC 61.096 60.000 0.00 0.00 43.37 4.01
5171 7151 2.067932 CTTTGCAGGTCTGGTCCCCA 62.068 60.000 0.00 0.00 0.00 4.96
5172 7152 1.650242 TTTGCAGGTCTGGTCCCCAA 61.650 55.000 0.00 0.00 30.80 4.12
5177 7157 1.303643 GGTCTGGTCCCCAAAGCAG 60.304 63.158 0.00 0.00 44.29 4.24
5179 7159 0.606673 GTCTGGTCCCCAAAGCAGTC 60.607 60.000 3.36 0.00 43.57 3.51
5180 7160 1.059584 TCTGGTCCCCAAAGCAGTCA 61.060 55.000 3.36 0.00 43.57 3.41
5218 7198 7.504403 CACCCAATCAAGATGAAGACTACTAT 58.496 38.462 0.00 0.00 0.00 2.12
5243 7223 2.226330 CCTTCCACAACATCGAACCAA 58.774 47.619 0.00 0.00 0.00 3.67
5299 7279 0.608640 AGGAATCGACCAGAAACGCT 59.391 50.000 0.00 0.00 0.00 5.07
5329 7309 1.071471 CACAGCGACCCCAGAGTTT 59.929 57.895 0.00 0.00 0.00 2.66
5452 7432 2.155279 GAGAAAGGCGGAAAAGCTTCT 58.845 47.619 0.00 0.00 35.32 2.85
5453 7433 2.155279 AGAAAGGCGGAAAAGCTTCTC 58.845 47.619 0.00 0.00 37.29 2.87
5479 7459 6.540189 GTCTGTTGAGCAGGTTTATGTGATAT 59.460 38.462 0.00 0.00 45.08 1.63
5540 7521 2.502213 TGCGGACGATGTGTATAAGG 57.498 50.000 0.00 0.00 0.00 2.69
5631 7612 0.391661 ATGCTTGGTGACTGTAGGCG 60.392 55.000 0.00 0.00 0.00 5.52
5632 7613 1.741770 GCTTGGTGACTGTAGGCGG 60.742 63.158 0.00 0.00 0.00 6.13
5633 7614 1.671742 CTTGGTGACTGTAGGCGGT 59.328 57.895 0.00 0.00 36.82 5.68
5634 7615 0.892755 CTTGGTGACTGTAGGCGGTA 59.107 55.000 0.00 0.00 33.67 4.02
5635 7616 0.892755 TTGGTGACTGTAGGCGGTAG 59.107 55.000 0.00 0.00 33.67 3.18
5636 7617 0.251474 TGGTGACTGTAGGCGGTAGT 60.251 55.000 0.00 0.00 33.67 2.73
5637 7618 0.893447 GGTGACTGTAGGCGGTAGTT 59.107 55.000 0.00 0.00 33.67 2.24
5638 7619 1.403780 GGTGACTGTAGGCGGTAGTTG 60.404 57.143 0.00 0.00 33.67 3.16
5640 7621 0.893447 GACTGTAGGCGGTAGTTGGT 59.107 55.000 0.00 0.00 33.67 3.67
5642 7623 1.001633 ACTGTAGGCGGTAGTTGGTTG 59.998 52.381 0.00 0.00 31.28 3.77
5643 7624 0.322322 TGTAGGCGGTAGTTGGTTGG 59.678 55.000 0.00 0.00 0.00 3.77
5644 7625 0.322648 GTAGGCGGTAGTTGGTTGGT 59.677 55.000 0.00 0.00 0.00 3.67
5645 7626 1.058284 TAGGCGGTAGTTGGTTGGTT 58.942 50.000 0.00 0.00 0.00 3.67
5646 7627 1.058284 AGGCGGTAGTTGGTTGGTTA 58.942 50.000 0.00 0.00 0.00 2.85
5690 7671 5.174037 ACTAATGTTAGGTTTAGCTGGCA 57.826 39.130 0.00 0.00 35.08 4.92
5691 7672 5.186198 ACTAATGTTAGGTTTAGCTGGCAG 58.814 41.667 10.94 10.94 35.08 4.85
5692 7673 3.721087 ATGTTAGGTTTAGCTGGCAGT 57.279 42.857 17.16 5.61 0.00 4.40
5693 7674 3.053831 TGTTAGGTTTAGCTGGCAGTC 57.946 47.619 17.16 8.57 0.00 3.51
5694 7675 2.637872 TGTTAGGTTTAGCTGGCAGTCT 59.362 45.455 17.16 15.47 0.00 3.24
5695 7676 3.003480 GTTAGGTTTAGCTGGCAGTCTG 58.997 50.000 17.16 0.00 0.00 3.51
5696 7677 0.322008 AGGTTTAGCTGGCAGTCTGC 60.322 55.000 16.93 16.93 44.08 4.26
5798 7793 0.108138 GACAGTCGATCCTGTTGGGG 60.108 60.000 9.76 0.00 45.46 4.96
5804 7799 0.324943 CGATCCTGTTGGGGTCTTGT 59.675 55.000 0.00 0.00 42.95 3.16
5848 7843 4.129380 CTGTTTCATTCTCAGGTGTGTGA 58.871 43.478 0.00 0.00 0.00 3.58
5885 7881 7.984050 TCAAGGATCTTTATCTCTTGTTAGCTG 59.016 37.037 0.00 0.00 39.24 4.24
5900 7899 2.627515 AGCTGGGCATGTACTATGTG 57.372 50.000 0.00 0.00 0.00 3.21
5901 7900 2.118679 AGCTGGGCATGTACTATGTGA 58.881 47.619 0.00 0.00 0.00 3.58
5912 7911 6.145209 GCATGTACTATGTGAGAGTTATGCAG 59.855 42.308 14.54 0.00 41.31 4.41
5938 7937 0.834687 AGACTGTTTGGGAGCCGGTA 60.835 55.000 1.90 0.00 0.00 4.02
5945 7944 1.705002 TTGGGAGCCGGTATGATGGG 61.705 60.000 1.90 0.00 0.00 4.00
5954 7953 1.237285 GGTATGATGGGTGGCATCGC 61.237 60.000 0.00 0.00 32.04 4.58
5956 7955 0.250424 TATGATGGGTGGCATCGCTG 60.250 55.000 0.00 0.00 32.04 5.18
5980 8007 1.630369 ACTTGGCTGTTAGGCTCATCA 59.370 47.619 0.00 0.00 41.96 3.07
5981 8008 2.286872 CTTGGCTGTTAGGCTCATCAG 58.713 52.381 0.00 0.00 41.96 2.90
5983 8010 3.776616 GCTGTTAGGCTCATCAGCT 57.223 52.632 22.25 0.00 46.35 4.24
5984 8011 2.035530 GCTGTTAGGCTCATCAGCTT 57.964 50.000 22.25 0.00 46.35 3.74
5985 8012 3.185246 GCTGTTAGGCTCATCAGCTTA 57.815 47.619 22.25 0.00 46.35 3.09
5987 8014 3.431486 GCTGTTAGGCTCATCAGCTTAGT 60.431 47.826 22.25 0.00 46.35 2.24
5988 8015 4.764172 CTGTTAGGCTCATCAGCTTAGTT 58.236 43.478 0.00 0.00 46.03 2.24
5989 8016 5.682471 GCTGTTAGGCTCATCAGCTTAGTTA 60.682 44.000 22.25 0.00 46.35 2.24
5990 8017 5.907207 TGTTAGGCTCATCAGCTTAGTTAG 58.093 41.667 0.00 0.00 46.03 2.34
5991 8018 5.656859 TGTTAGGCTCATCAGCTTAGTTAGA 59.343 40.000 0.00 0.00 46.03 2.10
5992 8019 6.325028 TGTTAGGCTCATCAGCTTAGTTAGAT 59.675 38.462 0.00 0.00 46.03 1.98
5993 8020 5.885449 AGGCTCATCAGCTTAGTTAGATT 57.115 39.130 0.00 0.00 46.03 2.40
5994 8021 5.609423 AGGCTCATCAGCTTAGTTAGATTG 58.391 41.667 0.00 0.00 46.03 2.67
5995 8022 5.130145 AGGCTCATCAGCTTAGTTAGATTGT 59.870 40.000 0.00 0.00 46.03 2.71
5996 8023 5.236047 GGCTCATCAGCTTAGTTAGATTGTG 59.764 44.000 0.00 0.00 46.03 3.33
5997 8024 5.814705 GCTCATCAGCTTAGTTAGATTGTGT 59.185 40.000 0.00 0.00 43.09 3.72
5999 8026 7.601073 TCATCAGCTTAGTTAGATTGTGTTG 57.399 36.000 0.00 0.00 0.00 3.33
6000 8027 6.595326 TCATCAGCTTAGTTAGATTGTGTTGG 59.405 38.462 0.00 0.00 0.00 3.77
6001 8028 5.865085 TCAGCTTAGTTAGATTGTGTTGGT 58.135 37.500 0.00 0.00 0.00 3.67
6002 8029 5.700832 TCAGCTTAGTTAGATTGTGTTGGTG 59.299 40.000 0.00 0.00 0.00 4.17
6003 8030 5.470098 CAGCTTAGTTAGATTGTGTTGGTGT 59.530 40.000 0.00 0.00 0.00 4.16
6004 8031 6.017109 CAGCTTAGTTAGATTGTGTTGGTGTT 60.017 38.462 0.00 0.00 0.00 3.32
6005 8032 6.204882 AGCTTAGTTAGATTGTGTTGGTGTTC 59.795 38.462 0.00 0.00 0.00 3.18
6006 8033 6.204882 GCTTAGTTAGATTGTGTTGGTGTTCT 59.795 38.462 0.00 0.00 0.00 3.01
6007 8034 7.255139 GCTTAGTTAGATTGTGTTGGTGTTCTT 60.255 37.037 0.00 0.00 0.00 2.52
6008 8035 6.377327 AGTTAGATTGTGTTGGTGTTCTTG 57.623 37.500 0.00 0.00 0.00 3.02
6009 8036 5.885912 AGTTAGATTGTGTTGGTGTTCTTGT 59.114 36.000 0.00 0.00 0.00 3.16
6010 8037 6.377146 AGTTAGATTGTGTTGGTGTTCTTGTT 59.623 34.615 0.00 0.00 0.00 2.83
6011 8038 5.659440 AGATTGTGTTGGTGTTCTTGTTT 57.341 34.783 0.00 0.00 0.00 2.83
6012 8039 6.036577 AGATTGTGTTGGTGTTCTTGTTTT 57.963 33.333 0.00 0.00 0.00 2.43
6013 8040 6.099341 AGATTGTGTTGGTGTTCTTGTTTTC 58.901 36.000 0.00 0.00 0.00 2.29
6014 8041 3.827625 TGTGTTGGTGTTCTTGTTTTCG 58.172 40.909 0.00 0.00 0.00 3.46
6015 8042 3.175929 GTGTTGGTGTTCTTGTTTTCGG 58.824 45.455 0.00 0.00 0.00 4.30
6016 8043 3.082548 TGTTGGTGTTCTTGTTTTCGGA 58.917 40.909 0.00 0.00 0.00 4.55
6017 8044 3.506455 TGTTGGTGTTCTTGTTTTCGGAA 59.494 39.130 0.00 0.00 0.00 4.30
6018 8045 4.158764 TGTTGGTGTTCTTGTTTTCGGAAT 59.841 37.500 0.00 0.00 0.00 3.01
6019 8046 4.993029 TGGTGTTCTTGTTTTCGGAATT 57.007 36.364 0.00 0.00 0.00 2.17
6020 8047 4.677584 TGGTGTTCTTGTTTTCGGAATTG 58.322 39.130 0.00 0.00 0.00 2.32
6021 8048 4.158764 TGGTGTTCTTGTTTTCGGAATTGT 59.841 37.500 0.00 0.00 0.00 2.71
6022 8049 4.502645 GGTGTTCTTGTTTTCGGAATTGTG 59.497 41.667 0.00 0.00 0.00 3.33
6023 8050 4.502645 GTGTTCTTGTTTTCGGAATTGTGG 59.497 41.667 0.00 0.00 0.00 4.17
6024 8051 4.158764 TGTTCTTGTTTTCGGAATTGTGGT 59.841 37.500 0.00 0.00 0.00 4.16
6025 8052 4.300189 TCTTGTTTTCGGAATTGTGGTG 57.700 40.909 0.00 0.00 0.00 4.17
6026 8053 3.948473 TCTTGTTTTCGGAATTGTGGTGA 59.052 39.130 0.00 0.00 0.00 4.02
6027 8054 4.399618 TCTTGTTTTCGGAATTGTGGTGAA 59.600 37.500 0.00 0.00 0.00 3.18
6028 8055 4.035278 TGTTTTCGGAATTGTGGTGAAC 57.965 40.909 0.00 0.00 0.00 3.18
6029 8056 3.040099 GTTTTCGGAATTGTGGTGAACG 58.960 45.455 0.00 0.00 0.00 3.95
6030 8057 1.956297 TTCGGAATTGTGGTGAACGT 58.044 45.000 0.00 0.00 0.00 3.99
6031 8058 1.222300 TCGGAATTGTGGTGAACGTG 58.778 50.000 0.00 0.00 0.00 4.49
6032 8059 1.202545 TCGGAATTGTGGTGAACGTGA 60.203 47.619 0.00 0.00 0.00 4.35
6033 8060 1.600013 CGGAATTGTGGTGAACGTGAA 59.400 47.619 0.00 0.00 0.00 3.18
6034 8061 2.601266 CGGAATTGTGGTGAACGTGAAC 60.601 50.000 0.00 0.00 0.00 3.18
6035 8062 2.601266 GGAATTGTGGTGAACGTGAACG 60.601 50.000 0.40 0.40 46.33 3.95
6036 8063 0.941542 ATTGTGGTGAACGTGAACGG 59.058 50.000 7.86 0.00 44.95 4.44
6037 8064 1.707239 TTGTGGTGAACGTGAACGGC 61.707 55.000 7.86 0.00 44.95 5.68
6038 8065 2.589442 TGGTGAACGTGAACGGCC 60.589 61.111 7.86 0.00 44.95 6.13
6039 8066 2.589442 GGTGAACGTGAACGGCCA 60.589 61.111 2.24 1.85 44.95 5.36
6040 8067 2.604174 GGTGAACGTGAACGGCCAG 61.604 63.158 2.24 0.00 44.95 4.85
6041 8068 2.970324 TGAACGTGAACGGCCAGC 60.970 61.111 2.24 0.00 44.95 4.85
6042 8069 2.665185 GAACGTGAACGGCCAGCT 60.665 61.111 2.24 0.00 44.95 4.24
6043 8070 2.203153 AACGTGAACGGCCAGCTT 60.203 55.556 2.24 0.00 44.95 3.74
6044 8071 2.443957 GAACGTGAACGGCCAGCTTG 62.444 60.000 2.24 0.00 44.95 4.01
6045 8072 4.389576 CGTGAACGGCCAGCTTGC 62.390 66.667 2.24 0.00 35.37 4.01
6046 8073 2.980233 GTGAACGGCCAGCTTGCT 60.980 61.111 9.95 0.00 0.00 3.91
6047 8074 2.203337 TGAACGGCCAGCTTGCTT 60.203 55.556 9.95 0.00 0.00 3.91
6048 8075 2.256461 GAACGGCCAGCTTGCTTG 59.744 61.111 9.95 5.46 0.00 4.01
6049 8076 3.903932 GAACGGCCAGCTTGCTTGC 62.904 63.158 9.95 9.78 0.00 4.01
6052 8079 3.308705 GGCCAGCTTGCTTGCCTT 61.309 61.111 24.68 0.00 40.77 4.35
6053 8080 2.739132 GCCAGCTTGCTTGCCTTT 59.261 55.556 1.78 0.00 0.00 3.11
6054 8081 1.666872 GCCAGCTTGCTTGCCTTTG 60.667 57.895 1.78 0.00 0.00 2.77
6055 8082 1.744014 CCAGCTTGCTTGCCTTTGT 59.256 52.632 0.00 0.00 0.00 2.83
6056 8083 0.599204 CCAGCTTGCTTGCCTTTGTG 60.599 55.000 0.00 0.00 0.00 3.33
6057 8084 0.599204 CAGCTTGCTTGCCTTTGTGG 60.599 55.000 0.00 0.00 39.35 4.17
6058 8085 1.044790 AGCTTGCTTGCCTTTGTGGT 61.045 50.000 0.00 0.00 38.35 4.16
6059 8086 0.877213 GCTTGCTTGCCTTTGTGGTG 60.877 55.000 0.00 0.00 38.35 4.17
6060 8087 0.746063 CTTGCTTGCCTTTGTGGTGA 59.254 50.000 0.00 0.00 38.35 4.02
6061 8088 1.342174 CTTGCTTGCCTTTGTGGTGAT 59.658 47.619 0.00 0.00 38.35 3.06
6062 8089 1.412079 TGCTTGCCTTTGTGGTGATT 58.588 45.000 0.00 0.00 38.35 2.57
6063 8090 1.761784 TGCTTGCCTTTGTGGTGATTT 59.238 42.857 0.00 0.00 38.35 2.17
6064 8091 2.137523 GCTTGCCTTTGTGGTGATTTG 58.862 47.619 0.00 0.00 38.35 2.32
6065 8092 2.758009 CTTGCCTTTGTGGTGATTTGG 58.242 47.619 0.00 0.00 38.35 3.28
6066 8093 2.079170 TGCCTTTGTGGTGATTTGGA 57.921 45.000 0.00 0.00 38.35 3.53
6067 8094 2.392662 TGCCTTTGTGGTGATTTGGAA 58.607 42.857 0.00 0.00 38.35 3.53
6068 8095 2.364970 TGCCTTTGTGGTGATTTGGAAG 59.635 45.455 0.00 0.00 38.35 3.46
6069 8096 2.627699 GCCTTTGTGGTGATTTGGAAGA 59.372 45.455 0.00 0.00 38.35 2.87
6070 8097 3.069443 GCCTTTGTGGTGATTTGGAAGAA 59.931 43.478 0.00 0.00 38.35 2.52
6071 8098 4.262592 GCCTTTGTGGTGATTTGGAAGAAT 60.263 41.667 0.00 0.00 38.35 2.40
6072 8099 5.742838 GCCTTTGTGGTGATTTGGAAGAATT 60.743 40.000 0.00 0.00 38.35 2.17
6073 8100 6.290605 CCTTTGTGGTGATTTGGAAGAATTT 58.709 36.000 0.00 0.00 0.00 1.82
6074 8101 6.767423 CCTTTGTGGTGATTTGGAAGAATTTT 59.233 34.615 0.00 0.00 0.00 1.82
6075 8102 7.282901 CCTTTGTGGTGATTTGGAAGAATTTTT 59.717 33.333 0.00 0.00 0.00 1.94
6076 8103 7.551035 TTGTGGTGATTTGGAAGAATTTTTG 57.449 32.000 0.00 0.00 0.00 2.44
6077 8104 6.882656 TGTGGTGATTTGGAAGAATTTTTGA 58.117 32.000 0.00 0.00 0.00 2.69
6078 8105 7.334090 TGTGGTGATTTGGAAGAATTTTTGAA 58.666 30.769 0.00 0.00 0.00 2.69
6079 8106 7.992033 TGTGGTGATTTGGAAGAATTTTTGAAT 59.008 29.630 0.00 0.00 0.00 2.57
6080 8107 8.839343 GTGGTGATTTGGAAGAATTTTTGAATT 58.161 29.630 0.00 0.00 0.00 2.17
6081 8108 9.054922 TGGTGATTTGGAAGAATTTTTGAATTC 57.945 29.630 0.00 0.00 38.98 2.17
6082 8109 8.506437 GGTGATTTGGAAGAATTTTTGAATTCC 58.494 33.333 2.27 0.00 39.39 3.01
6083 8110 8.506437 GTGATTTGGAAGAATTTTTGAATTCCC 58.494 33.333 2.27 4.85 39.39 3.97
6084 8111 8.216423 TGATTTGGAAGAATTTTTGAATTCCCA 58.784 29.630 2.27 6.90 39.39 4.37
6085 8112 9.234827 GATTTGGAAGAATTTTTGAATTCCCAT 57.765 29.630 2.27 0.00 39.39 4.00
6086 8113 7.982761 TTGGAAGAATTTTTGAATTCCCATG 57.017 32.000 2.27 0.00 39.39 3.66
6087 8114 7.313740 TGGAAGAATTTTTGAATTCCCATGA 57.686 32.000 2.27 0.00 39.39 3.07
6088 8115 7.743749 TGGAAGAATTTTTGAATTCCCATGAA 58.256 30.769 2.27 0.00 39.39 2.57
6089 8116 8.216423 TGGAAGAATTTTTGAATTCCCATGAAA 58.784 29.630 2.27 0.00 39.39 2.69
6090 8117 9.065798 GGAAGAATTTTTGAATTCCCATGAAAA 57.934 29.630 2.27 0.00 39.39 2.29
6113 8140 4.895224 AAAAGGTTCGAGTTGTTCTTCC 57.105 40.909 0.00 0.00 0.00 3.46
6114 8141 3.840124 AAGGTTCGAGTTGTTCTTCCT 57.160 42.857 0.00 0.00 0.00 3.36
6115 8142 4.950205 AAGGTTCGAGTTGTTCTTCCTA 57.050 40.909 0.00 0.00 0.00 2.94
6116 8143 5.485209 AAGGTTCGAGTTGTTCTTCCTAT 57.515 39.130 0.00 0.00 0.00 2.57
6117 8144 4.822026 AGGTTCGAGTTGTTCTTCCTATG 58.178 43.478 0.00 0.00 0.00 2.23
6118 8145 4.283722 AGGTTCGAGTTGTTCTTCCTATGT 59.716 41.667 0.00 0.00 0.00 2.29
6119 8146 5.479375 AGGTTCGAGTTGTTCTTCCTATGTA 59.521 40.000 0.00 0.00 0.00 2.29
6120 8147 5.575995 GGTTCGAGTTGTTCTTCCTATGTAC 59.424 44.000 0.00 0.00 0.00 2.90
6121 8148 6.388278 GTTCGAGTTGTTCTTCCTATGTACT 58.612 40.000 0.00 0.00 0.00 2.73
6122 8149 6.192234 TCGAGTTGTTCTTCCTATGTACTC 57.808 41.667 0.00 0.00 0.00 2.59
6123 8150 5.708697 TCGAGTTGTTCTTCCTATGTACTCA 59.291 40.000 0.00 0.00 32.40 3.41
6124 8151 6.030849 CGAGTTGTTCTTCCTATGTACTCAG 58.969 44.000 0.00 0.00 32.40 3.35
6125 8152 6.127980 CGAGTTGTTCTTCCTATGTACTCAGA 60.128 42.308 0.00 0.00 32.40 3.27
6126 8153 7.164230 AGTTGTTCTTCCTATGTACTCAGAG 57.836 40.000 0.00 0.00 33.25 3.35
6127 8154 6.948886 AGTTGTTCTTCCTATGTACTCAGAGA 59.051 38.462 3.79 0.00 35.18 3.10
6128 8155 7.451877 AGTTGTTCTTCCTATGTACTCAGAGAA 59.548 37.037 3.79 0.00 35.18 2.87
6129 8156 7.776618 TGTTCTTCCTATGTACTCAGAGAAA 57.223 36.000 3.79 0.00 35.18 2.52
6130 8157 8.367660 TGTTCTTCCTATGTACTCAGAGAAAT 57.632 34.615 3.79 0.00 35.18 2.17
6131 8158 9.475620 TGTTCTTCCTATGTACTCAGAGAAATA 57.524 33.333 3.79 0.00 35.18 1.40
6132 8159 9.959749 GTTCTTCCTATGTACTCAGAGAAATAG 57.040 37.037 3.79 7.88 35.18 1.73
6133 8160 9.922477 TTCTTCCTATGTACTCAGAGAAATAGA 57.078 33.333 3.79 0.00 35.18 1.98
6134 8161 9.922477 TCTTCCTATGTACTCAGAGAAATAGAA 57.078 33.333 3.79 4.73 35.18 2.10
6135 8162 9.959749 CTTCCTATGTACTCAGAGAAATAGAAC 57.040 37.037 3.79 0.00 35.18 3.01
6136 8163 9.702253 TTCCTATGTACTCAGAGAAATAGAACT 57.298 33.333 3.79 0.00 35.18 3.01
6154 8181 9.941325 AATAGAACTATATTCTGAGAATGGCAG 57.059 33.333 17.50 12.81 34.71 4.85
6155 8182 7.372260 AGAACTATATTCTGAGAATGGCAGT 57.628 36.000 17.50 13.37 34.98 4.40
6156 8183 7.441017 AGAACTATATTCTGAGAATGGCAGTC 58.559 38.462 17.50 6.88 34.98 3.51
6157 8184 6.107901 ACTATATTCTGAGAATGGCAGTCC 57.892 41.667 17.50 3.96 34.98 3.85
6187 8214 5.633655 TTTAGTTCAACAGGGTACTTGGA 57.366 39.130 0.00 0.00 0.00 3.53
6188 8215 5.633655 TTAGTTCAACAGGGTACTTGGAA 57.366 39.130 0.00 0.00 0.00 3.53
6247 8274 6.577103 TCTGAGAATCTGCTGTAAATGGTAG 58.423 40.000 0.00 0.00 34.92 3.18
6250 8277 6.070824 TGAGAATCTGCTGTAAATGGTAGTGA 60.071 38.462 0.00 0.00 34.92 3.41
6252 8279 7.341805 AGAATCTGCTGTAAATGGTAGTGAAT 58.658 34.615 0.00 0.00 0.00 2.57
6253 8280 7.497249 AGAATCTGCTGTAAATGGTAGTGAATC 59.503 37.037 0.00 0.00 0.00 2.52
6254 8281 6.299805 TCTGCTGTAAATGGTAGTGAATCT 57.700 37.500 0.00 0.00 0.00 2.40
6255 8282 6.108687 TCTGCTGTAAATGGTAGTGAATCTG 58.891 40.000 0.00 0.00 0.00 2.90
6256 8283 4.635765 TGCTGTAAATGGTAGTGAATCTGC 59.364 41.667 0.00 0.00 0.00 4.26
6318 8713 2.742589 GGGGAATTCAAACTCGAGACAC 59.257 50.000 21.68 0.93 0.00 3.67
6320 8715 3.399330 GGAATTCAAACTCGAGACACCA 58.601 45.455 21.68 0.00 0.00 4.17
6321 8716 3.433615 GGAATTCAAACTCGAGACACCAG 59.566 47.826 21.68 2.70 0.00 4.00
6324 8719 0.249868 CAAACTCGAGACACCAGGCA 60.250 55.000 21.68 0.00 0.00 4.75
6358 8753 1.541588 GCTTTACCACTTGGGCTGAAG 59.458 52.381 0.00 0.00 42.05 3.02
6383 8778 6.975772 GCAGTTTTTGTGGAAACATGTACTTA 59.024 34.615 0.00 0.00 46.14 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.494870 TGGTCCTCTTTTACGCCTAGTC 59.505 50.000 0.00 0.00 0.00 2.59
1 2 2.496470 CTGGTCCTCTTTTACGCCTAGT 59.504 50.000 0.00 0.00 0.00 2.57
2 3 2.496470 ACTGGTCCTCTTTTACGCCTAG 59.504 50.000 0.00 0.00 0.00 3.02
3 4 2.532843 ACTGGTCCTCTTTTACGCCTA 58.467 47.619 0.00 0.00 0.00 3.93
4 5 1.349067 ACTGGTCCTCTTTTACGCCT 58.651 50.000 0.00 0.00 0.00 5.52
5 6 3.323751 TTACTGGTCCTCTTTTACGCC 57.676 47.619 0.00 0.00 0.00 5.68
6 7 4.313282 AGTTTACTGGTCCTCTTTTACGC 58.687 43.478 0.00 0.00 0.00 4.42
7 8 6.073385 GGAAAGTTTACTGGTCCTCTTTTACG 60.073 42.308 0.00 0.00 31.59 3.18
45 46 3.686241 TGCTTGTCTAGAATGTGCATGAC 59.314 43.478 0.00 0.00 0.00 3.06
61 62 4.586841 TGTAAAATTGCTAGGGTTGCTTGT 59.413 37.500 0.00 0.00 0.00 3.16
80 81 9.617523 ATGTGTTCATGATTATGATCAGTGTAA 57.382 29.630 10.58 0.00 45.01 2.41
129 131 9.102757 GTGATGACTATGATCAGTGTACATTTT 57.897 33.333 0.00 0.00 30.39 1.82
132 134 7.352079 TGTGATGACTATGATCAGTGTACAT 57.648 36.000 0.00 8.11 30.39 2.29
155 157 2.351738 GGTTCGATTTTGAGCCAACCTG 60.352 50.000 0.00 0.00 38.93 4.00
156 158 1.886542 GGTTCGATTTTGAGCCAACCT 59.113 47.619 0.00 0.00 38.93 3.50
162 164 2.347452 TCGATTCGGTTCGATTTTGAGC 59.653 45.455 6.18 0.00 42.81 4.26
172 174 0.437295 CGGTTGTGTCGATTCGGTTC 59.563 55.000 6.18 0.00 0.00 3.62
175 177 2.736682 GGCGGTTGTGTCGATTCGG 61.737 63.158 6.18 0.00 0.00 4.30
182 184 1.817209 TTTTTGGGGCGGTTGTGTC 59.183 52.632 0.00 0.00 0.00 3.67
217 220 1.335872 CGGATGTTGTGAAAGCCAACC 60.336 52.381 0.00 0.00 41.13 3.77
218 221 1.930371 GCGGATGTTGTGAAAGCCAAC 60.930 52.381 0.00 0.00 41.97 3.77
221 224 1.212751 GGCGGATGTTGTGAAAGCC 59.787 57.895 0.00 0.00 36.08 4.35
224 227 1.879380 CTTCAGGCGGATGTTGTGAAA 59.121 47.619 0.00 0.00 0.00 2.69
237 240 0.747255 TATCGAGGAGTGCTTCAGGC 59.253 55.000 0.00 0.00 42.22 4.85
239 242 2.685388 TGACTATCGAGGAGTGCTTCAG 59.315 50.000 7.46 0.00 0.00 3.02
251 254 5.545063 TGCCCAAATCTTATGACTATCGA 57.455 39.130 0.00 0.00 0.00 3.59
256 259 3.950397 TCGTTGCCCAAATCTTATGACT 58.050 40.909 0.00 0.00 0.00 3.41
258 261 3.128589 GCTTCGTTGCCCAAATCTTATGA 59.871 43.478 0.00 0.00 0.00 2.15
262 265 1.327303 TGCTTCGTTGCCCAAATCTT 58.673 45.000 0.62 0.00 0.00 2.40
268 271 1.077787 CCCTATGCTTCGTTGCCCA 60.078 57.895 0.62 0.00 0.00 5.36
269 272 0.815615 CTCCCTATGCTTCGTTGCCC 60.816 60.000 0.62 0.00 0.00 5.36
276 279 1.369321 CTCCGCCTCCCTATGCTTC 59.631 63.158 0.00 0.00 0.00 3.86
305 308 3.177272 CTGCAAGGCGATCATGGCG 62.177 63.158 4.80 4.80 39.82 5.69
309 312 2.997899 GCTACTGCAAGGCGATCAT 58.002 52.632 0.00 0.00 39.30 2.45
324 327 0.678684 TGTCGATCCAGGTCGTGCTA 60.679 55.000 0.00 0.00 42.07 3.49
331 334 1.037579 TCGCTGATGTCGATCCAGGT 61.038 55.000 11.73 0.00 0.00 4.00
334 337 1.066422 GCTCGCTGATGTCGATCCA 59.934 57.895 0.00 0.00 35.25 3.41
337 340 0.030504 CTGAGCTCGCTGATGTCGAT 59.969 55.000 9.64 0.00 35.25 3.59
340 343 1.141449 AGCTGAGCTCGCTGATGTC 59.859 57.895 25.28 3.52 36.15 3.06
341 344 3.296851 AGCTGAGCTCGCTGATGT 58.703 55.556 25.28 7.57 36.15 3.06
365 368 0.889186 TCTCCCTTTTTGCGGCAGAC 60.889 55.000 1.67 0.00 0.00 3.51
370 373 1.074951 ACCCTCTCCCTTTTTGCGG 59.925 57.895 0.00 0.00 0.00 5.69
376 379 0.921256 CCCCATCACCCTCTCCCTTT 60.921 60.000 0.00 0.00 0.00 3.11
377 380 1.308216 CCCCATCACCCTCTCCCTT 60.308 63.158 0.00 0.00 0.00 3.95
378 381 2.374342 CCCCATCACCCTCTCCCT 59.626 66.667 0.00 0.00 0.00 4.20
390 393 0.252742 ACTCCTTCGTCTTCCCCCAT 60.253 55.000 0.00 0.00 0.00 4.00
392 395 1.597461 CACTCCTTCGTCTTCCCCC 59.403 63.158 0.00 0.00 0.00 5.40
396 399 0.685660 AACCCCACTCCTTCGTCTTC 59.314 55.000 0.00 0.00 0.00 2.87
401 404 0.953960 CCGAAAACCCCACTCCTTCG 60.954 60.000 0.00 0.00 38.81 3.79
409 412 2.121872 TCTCCCCCGAAAACCCCA 60.122 61.111 0.00 0.00 0.00 4.96
414 417 1.004277 CAATCCAGTCTCCCCCGAAAA 59.996 52.381 0.00 0.00 0.00 2.29
421 424 0.543749 CTCCCACAATCCAGTCTCCC 59.456 60.000 0.00 0.00 0.00 4.30
422 425 1.484240 CTCTCCCACAATCCAGTCTCC 59.516 57.143 0.00 0.00 0.00 3.71
445 457 2.355115 GCCCACCCACCGATCTTT 59.645 61.111 0.00 0.00 0.00 2.52
446 458 3.728373 GGCCCACCCACCGATCTT 61.728 66.667 0.00 0.00 0.00 2.40
962 2870 2.888051 GCGCTTCTCTTCCCTCGC 60.888 66.667 0.00 0.00 35.82 5.03
1271 3188 0.443869 CAGCACGAAGTCAAATCCGG 59.556 55.000 0.00 0.00 41.61 5.14
1389 3320 1.966451 CGGAAAGGAAGCCGCAACT 60.966 57.895 0.00 0.00 41.17 3.16
1419 3350 3.460103 ACCTCAAACGAACTCGCTAAAA 58.540 40.909 0.00 0.00 44.43 1.52
1421 3352 2.806608 ACCTCAAACGAACTCGCTAA 57.193 45.000 0.00 0.00 44.43 3.09
1422 3353 4.171005 CAATACCTCAAACGAACTCGCTA 58.829 43.478 0.00 0.00 44.43 4.26
1423 3354 2.993899 CAATACCTCAAACGAACTCGCT 59.006 45.455 0.00 0.00 44.43 4.93
1425 3356 3.739300 ACACAATACCTCAAACGAACTCG 59.261 43.478 0.00 0.00 46.33 4.18
1426 3357 4.748102 TCACACAATACCTCAAACGAACTC 59.252 41.667 0.00 0.00 0.00 3.01
1427 3358 4.510340 GTCACACAATACCTCAAACGAACT 59.490 41.667 0.00 0.00 0.00 3.01
1432 3369 5.063880 AGAAGGTCACACAATACCTCAAAC 58.936 41.667 0.00 0.00 45.51 2.93
1438 3375 5.357032 CCCAATAAGAAGGTCACACAATACC 59.643 44.000 0.00 0.00 35.91 2.73
1449 3386 6.667414 TGAACATATTTGCCCAATAAGAAGGT 59.333 34.615 0.00 0.00 30.78 3.50
1454 3391 5.904941 TGCTGAACATATTTGCCCAATAAG 58.095 37.500 0.00 0.00 30.78 1.73
1455 3392 5.929058 TGCTGAACATATTTGCCCAATAA 57.071 34.783 0.00 0.00 30.78 1.40
1456 3393 6.482898 AATGCTGAACATATTTGCCCAATA 57.517 33.333 0.00 0.00 38.34 1.90
1457 3394 5.362105 AATGCTGAACATATTTGCCCAAT 57.638 34.783 0.00 0.00 38.34 3.16
1478 3415 0.934496 CACGAGTTCTGACGGCAAAA 59.066 50.000 0.00 0.00 0.00 2.44
1495 3432 0.179045 CAGAATGGACCCCGGATCAC 60.179 60.000 0.73 0.00 0.00 3.06
1517 3456 1.134560 ACGAAACGAGCAGTAGATCCC 59.865 52.381 0.00 0.00 0.00 3.85
1525 3464 1.136884 CGACAAGAACGAAACGAGCAG 60.137 52.381 0.00 0.00 0.00 4.24
1528 3467 0.850217 TGCGACAAGAACGAAACGAG 59.150 50.000 0.00 0.00 0.00 4.18
1562 3501 3.665409 CAGCAAGAACAATGCAGTTTACG 59.335 43.478 0.00 0.00 46.22 3.18
1611 3550 7.842982 TGTGAACCTTAGCACACATAACTATA 58.157 34.615 0.00 0.00 39.86 1.31
1662 3601 9.888878 CCAACATCTGCAGTGATAAATAAATAG 57.111 33.333 14.67 0.00 0.00 1.73
1672 3611 2.559668 CCAAACCAACATCTGCAGTGAT 59.440 45.455 14.67 3.51 0.00 3.06
1674 3613 1.955778 TCCAAACCAACATCTGCAGTG 59.044 47.619 14.67 13.55 0.00 3.66
1687 3626 1.544246 CACCTCCGGATTTTCCAAACC 59.456 52.381 3.57 0.00 35.91 3.27
1734 3673 2.622436 CGGACCCTCTCACAGAAAATC 58.378 52.381 0.00 0.00 0.00 2.17
1737 3676 1.118965 TGCGGACCCTCTCACAGAAA 61.119 55.000 0.00 0.00 0.00 2.52
1740 3679 0.036010 AAATGCGGACCCTCTCACAG 60.036 55.000 0.00 0.00 0.00 3.66
1747 3686 0.625849 ATTCCAGAAATGCGGACCCT 59.374 50.000 0.00 0.00 0.00 4.34
2043 3992 6.314648 TCAGTTTCACATCAACATATCTGCTC 59.685 38.462 0.00 0.00 0.00 4.26
2109 4058 5.640158 TCAGGAAAAGAAGTCCTTTACCA 57.360 39.130 0.00 0.00 43.26 3.25
2115 4064 7.663493 CAGATTAGTTTCAGGAAAAGAAGTCCT 59.337 37.037 0.00 0.00 46.92 3.85
2159 4108 5.242393 GGGCAGATACATATGCTGTTCAATT 59.758 40.000 8.57 0.00 44.00 2.32
2163 4112 4.013267 AGGGCAGATACATATGCTGTTC 57.987 45.455 8.57 0.37 44.00 3.18
2209 4158 6.219473 TGCAAATTTTGATTACACGGAACAT 58.781 32.000 13.26 0.00 0.00 2.71
2251 4200 3.620488 TCCAATACCAAGGCAAGCTAAG 58.380 45.455 0.00 0.00 0.00 2.18
2558 4510 5.841957 AAGCCTATTTAACTTGCATCCAG 57.158 39.130 0.00 0.00 0.00 3.86
2652 4604 6.072008 AGCATTGACACTTTGCATATAACACA 60.072 34.615 6.90 0.00 38.84 3.72
2653 4605 6.252015 CAGCATTGACACTTTGCATATAACAC 59.748 38.462 6.90 0.00 38.84 3.32
2654 4606 6.150809 TCAGCATTGACACTTTGCATATAACA 59.849 34.615 6.90 0.00 38.84 2.41
2671 4623 5.403466 GGTTTGCTAAGAAAAGTCAGCATTG 59.597 40.000 0.00 0.00 43.13 2.82
2680 4632 8.621286 TGAAGTTTCTAGGTTTGCTAAGAAAAG 58.379 33.333 0.00 0.00 0.00 2.27
2685 4639 7.656137 TGTACTGAAGTTTCTAGGTTTGCTAAG 59.344 37.037 0.00 0.00 0.00 2.18
2722 4676 8.764558 TCAAGTTTACAGGGCATAACTATCTTA 58.235 33.333 0.00 0.00 31.06 2.10
2729 4683 6.919721 TGAAATCAAGTTTACAGGGCATAAC 58.080 36.000 0.00 0.00 0.00 1.89
2753 4707 8.443176 ACCATAGTGATATGTTGAATCTCCATT 58.557 33.333 0.00 0.00 0.00 3.16
2770 4724 7.931015 AGGGACTATTGAATTACCATAGTGA 57.069 36.000 7.92 0.00 36.02 3.41
2809 4763 9.054922 GTACAAGAGAACTTCGGATACTACTAT 57.945 37.037 0.00 0.00 33.70 2.12
2837 4792 6.380079 AGATGGACCTGACTTTCAAGTATT 57.620 37.500 0.00 0.00 39.88 1.89
3015 4970 0.179108 GACCCTCGCACTGATACACC 60.179 60.000 0.00 0.00 0.00 4.16
3110 5065 2.323999 TCCCCAACCAGCAAAATCAT 57.676 45.000 0.00 0.00 0.00 2.45
3165 5120 7.589574 ACAAACAAACAAACAGGAACATAAC 57.410 32.000 0.00 0.00 0.00 1.89
3378 5357 5.470047 AGAACGAGGTCAGAACATTAAGT 57.530 39.130 0.00 0.00 0.00 2.24
3401 5380 5.163237 GGTAGCAGTTTCATCCCCTATAACA 60.163 44.000 0.00 0.00 0.00 2.41
3726 5705 8.871629 TGCTGGGTAAAAAGAAGTATTATTCA 57.128 30.769 0.00 0.00 0.00 2.57
3978 5958 7.773690 ACAAAAACTAGGCTAAATCATATCCGT 59.226 33.333 0.00 0.00 0.00 4.69
4045 6025 6.656693 ACAGGAACAATAATTGAGAAGTCAGG 59.343 38.462 0.00 0.00 32.98 3.86
4215 6195 1.133025 CAATAGCCAAAACCAGCTCCG 59.867 52.381 0.00 0.00 40.56 4.63
4352 6332 7.582435 TGAGAAGAATACTTAGCGTTTGAAG 57.418 36.000 0.00 0.00 36.39 3.02
4671 6651 5.801380 TGGGTGATACTTGAGTAAACCTTC 58.199 41.667 18.34 9.25 39.42 3.46
4699 6679 2.111999 TTGAGAACTGGACCTGGCGG 62.112 60.000 3.15 0.00 0.00 6.13
4716 6696 0.816825 CGCCCCTGATGATGGACTTG 60.817 60.000 0.00 0.00 0.00 3.16
4892 6872 4.316645 CACCAACATCCATCAATTTGCAA 58.683 39.130 0.00 0.00 0.00 4.08
4960 6940 3.491104 GGCTCCGACCATAACTAGTTCAG 60.491 52.174 12.39 5.83 0.00 3.02
4998 6978 1.678101 GGGATGCAAATGTGTAGCCTC 59.322 52.381 8.25 0.00 44.56 4.70
5006 6986 1.284198 AGAGAGCAGGGATGCAAATGT 59.716 47.619 2.73 0.00 37.25 2.71
5032 7012 7.490000 AGATCATTAGTTCGTAGTACCAAAGG 58.510 38.462 0.00 0.00 0.00 3.11
5171 7151 3.558109 GCTACCCTCTTTCTGACTGCTTT 60.558 47.826 0.00 0.00 0.00 3.51
5172 7152 2.027653 GCTACCCTCTTTCTGACTGCTT 60.028 50.000 0.00 0.00 0.00 3.91
5177 7157 2.388310 GGTGCTACCCTCTTTCTGAC 57.612 55.000 0.00 0.00 30.04 3.51
5218 7198 1.418264 TCGATGTTGTGGAAGGTGGAA 59.582 47.619 0.00 0.00 0.00 3.53
5243 7223 6.445139 TCCCATTCTCTCTTTGAGTATTTCCT 59.555 38.462 0.00 0.00 43.13 3.36
5299 7279 0.678950 TCGCTGTGTGTTCCATCAGA 59.321 50.000 0.00 0.00 0.00 3.27
5317 7297 0.251787 ATTGGGCAAACTCTGGGGTC 60.252 55.000 0.00 0.00 0.00 4.46
5382 7362 1.078637 ATCGACTCGTCCTCGGACA 60.079 57.895 15.77 3.12 44.77 4.02
5488 7469 2.165845 TCGAGCTCCCTACAGTTTTAGC 59.834 50.000 8.47 0.00 0.00 3.09
5540 7521 3.621715 CGCTACCAAGTTTCCAATCCTAC 59.378 47.826 0.00 0.00 0.00 3.18
5642 7623 6.547141 TGAATTGAGATGGATGATGGTTAACC 59.453 38.462 18.27 18.27 0.00 2.85
5643 7624 7.572523 TGAATTGAGATGGATGATGGTTAAC 57.427 36.000 0.00 0.00 0.00 2.01
5644 7625 7.835682 AGTTGAATTGAGATGGATGATGGTTAA 59.164 33.333 0.00 0.00 0.00 2.01
5645 7626 7.348815 AGTTGAATTGAGATGGATGATGGTTA 58.651 34.615 0.00 0.00 0.00 2.85
5646 7627 6.192773 AGTTGAATTGAGATGGATGATGGTT 58.807 36.000 0.00 0.00 0.00 3.67
5698 7679 9.277783 CGACTAAAAATCTAAAGATCCATGGAT 57.722 33.333 27.66 27.66 37.59 3.41
5699 7680 8.482943 TCGACTAAAAATCTAAAGATCCATGGA 58.517 33.333 18.88 18.88 32.75 3.41
5700 7681 8.662781 TCGACTAAAAATCTAAAGATCCATGG 57.337 34.615 4.97 4.97 32.75 3.66
5702 7683 8.778358 GCATCGACTAAAAATCTAAAGATCCAT 58.222 33.333 0.00 0.00 32.75 3.41
5703 7684 7.768582 TGCATCGACTAAAAATCTAAAGATCCA 59.231 33.333 0.00 0.00 32.75 3.41
5716 7711 2.503765 TCCCCTGATGCATCGACTAAAA 59.496 45.455 21.34 1.37 0.00 1.52
5798 7793 5.879237 TGTTCAACAAGACAATGACAAGAC 58.121 37.500 0.00 0.00 0.00 3.01
5804 7799 5.471116 CAGGAGATGTTCAACAAGACAATGA 59.529 40.000 0.00 0.00 0.00 2.57
5848 7843 8.713036 AGATAAAGATCCTTGAAATGCTACTCT 58.287 33.333 0.00 0.00 31.81 3.24
5853 7848 7.833183 ACAAGAGATAAAGATCCTTGAAATGCT 59.167 33.333 16.37 0.00 39.87 3.79
5885 7881 4.408182 AACTCTCACATAGTACATGCCC 57.592 45.455 0.00 0.00 0.00 5.36
5912 7911 2.287849 GCTCCCAAACAGTCTTTGCTTC 60.288 50.000 0.00 0.00 0.00 3.86
5954 7953 1.021390 CCTAACAGCCAAGTCGCCAG 61.021 60.000 0.00 0.00 0.00 4.85
5956 7955 2.399356 GCCTAACAGCCAAGTCGCC 61.399 63.158 0.00 0.00 0.00 5.54
5962 7961 1.679944 GCTGATGAGCCTAACAGCCAA 60.680 52.381 0.00 0.00 46.46 4.52
5964 7963 2.700329 GCTGATGAGCCTAACAGCC 58.300 57.895 0.00 0.00 46.46 4.85
5980 8007 5.621193 ACACCAACACAATCTAACTAAGCT 58.379 37.500 0.00 0.00 0.00 3.74
5981 8008 5.941948 ACACCAACACAATCTAACTAAGC 57.058 39.130 0.00 0.00 0.00 3.09
5982 8009 7.730364 AGAACACCAACACAATCTAACTAAG 57.270 36.000 0.00 0.00 0.00 2.18
5983 8010 7.554835 ACAAGAACACCAACACAATCTAACTAA 59.445 33.333 0.00 0.00 0.00 2.24
5984 8011 7.051623 ACAAGAACACCAACACAATCTAACTA 58.948 34.615 0.00 0.00 0.00 2.24
5985 8012 5.885912 ACAAGAACACCAACACAATCTAACT 59.114 36.000 0.00 0.00 0.00 2.24
5987 8014 6.767524 AACAAGAACACCAACACAATCTAA 57.232 33.333 0.00 0.00 0.00 2.10
5988 8015 6.767524 AAACAAGAACACCAACACAATCTA 57.232 33.333 0.00 0.00 0.00 1.98
5989 8016 5.659440 AAACAAGAACACCAACACAATCT 57.341 34.783 0.00 0.00 0.00 2.40
5990 8017 5.004345 CGAAAACAAGAACACCAACACAATC 59.996 40.000 0.00 0.00 0.00 2.67
5991 8018 4.862018 CGAAAACAAGAACACCAACACAAT 59.138 37.500 0.00 0.00 0.00 2.71
5992 8019 4.230657 CGAAAACAAGAACACCAACACAA 58.769 39.130 0.00 0.00 0.00 3.33
5993 8020 3.366476 CCGAAAACAAGAACACCAACACA 60.366 43.478 0.00 0.00 0.00 3.72
5994 8021 3.119779 TCCGAAAACAAGAACACCAACAC 60.120 43.478 0.00 0.00 0.00 3.32
5995 8022 3.082548 TCCGAAAACAAGAACACCAACA 58.917 40.909 0.00 0.00 0.00 3.33
5996 8023 3.768468 TCCGAAAACAAGAACACCAAC 57.232 42.857 0.00 0.00 0.00 3.77
5997 8024 4.993029 ATTCCGAAAACAAGAACACCAA 57.007 36.364 0.00 0.00 0.00 3.67
5999 8026 4.502645 CACAATTCCGAAAACAAGAACACC 59.497 41.667 0.00 0.00 0.00 4.16
6000 8027 4.502645 CCACAATTCCGAAAACAAGAACAC 59.497 41.667 0.00 0.00 0.00 3.32
6001 8028 4.158764 ACCACAATTCCGAAAACAAGAACA 59.841 37.500 0.00 0.00 0.00 3.18
6002 8029 4.502645 CACCACAATTCCGAAAACAAGAAC 59.497 41.667 0.00 0.00 0.00 3.01
6003 8030 4.399618 TCACCACAATTCCGAAAACAAGAA 59.600 37.500 0.00 0.00 0.00 2.52
6004 8031 3.948473 TCACCACAATTCCGAAAACAAGA 59.052 39.130 0.00 0.00 0.00 3.02
6005 8032 4.300189 TCACCACAATTCCGAAAACAAG 57.700 40.909 0.00 0.00 0.00 3.16
6006 8033 4.425520 GTTCACCACAATTCCGAAAACAA 58.574 39.130 0.00 0.00 0.00 2.83
6007 8034 3.487711 CGTTCACCACAATTCCGAAAACA 60.488 43.478 0.00 0.00 0.00 2.83
6008 8035 3.040099 CGTTCACCACAATTCCGAAAAC 58.960 45.455 0.00 0.00 0.00 2.43
6009 8036 2.683867 ACGTTCACCACAATTCCGAAAA 59.316 40.909 0.00 0.00 0.00 2.29
6010 8037 2.032302 CACGTTCACCACAATTCCGAAA 59.968 45.455 0.00 0.00 0.00 3.46
6011 8038 1.600013 CACGTTCACCACAATTCCGAA 59.400 47.619 0.00 0.00 0.00 4.30
6012 8039 1.202545 TCACGTTCACCACAATTCCGA 60.203 47.619 0.00 0.00 0.00 4.55
6013 8040 1.222300 TCACGTTCACCACAATTCCG 58.778 50.000 0.00 0.00 0.00 4.30
6014 8041 2.601266 CGTTCACGTTCACCACAATTCC 60.601 50.000 0.00 0.00 34.11 3.01
6015 8042 2.601266 CCGTTCACGTTCACCACAATTC 60.601 50.000 0.00 0.00 37.74 2.17
6016 8043 1.332375 CCGTTCACGTTCACCACAATT 59.668 47.619 0.00 0.00 37.74 2.32
6017 8044 0.941542 CCGTTCACGTTCACCACAAT 59.058 50.000 0.00 0.00 37.74 2.71
6018 8045 1.707239 GCCGTTCACGTTCACCACAA 61.707 55.000 0.00 0.00 37.74 3.33
6019 8046 2.174969 GCCGTTCACGTTCACCACA 61.175 57.895 0.00 0.00 37.74 4.17
6020 8047 2.629763 GCCGTTCACGTTCACCAC 59.370 61.111 0.00 0.00 37.74 4.16
6021 8048 2.589442 GGCCGTTCACGTTCACCA 60.589 61.111 0.00 0.00 37.74 4.17
6022 8049 2.589442 TGGCCGTTCACGTTCACC 60.589 61.111 0.00 0.00 37.74 4.02
6023 8050 2.935955 CTGGCCGTTCACGTTCAC 59.064 61.111 0.00 0.00 37.74 3.18
6024 8051 2.933878 AAGCTGGCCGTTCACGTTCA 62.934 55.000 0.00 0.00 37.74 3.18
6025 8052 2.251642 AAGCTGGCCGTTCACGTTC 61.252 57.895 0.00 0.00 37.74 3.95
6026 8053 2.203153 AAGCTGGCCGTTCACGTT 60.203 55.556 0.00 0.00 37.74 3.99
6027 8054 2.972505 CAAGCTGGCCGTTCACGT 60.973 61.111 0.00 0.00 37.74 4.49
6028 8055 4.389576 GCAAGCTGGCCGTTCACG 62.390 66.667 0.00 0.00 39.44 4.35
6029 8056 2.555547 AAGCAAGCTGGCCGTTCAC 61.556 57.895 10.23 0.00 0.00 3.18
6030 8057 2.203337 AAGCAAGCTGGCCGTTCA 60.203 55.556 10.23 0.00 0.00 3.18
6031 8058 2.256461 CAAGCAAGCTGGCCGTTC 59.744 61.111 10.23 0.00 0.00 3.95
6032 8059 3.982241 GCAAGCAAGCTGGCCGTT 61.982 61.111 10.23 0.00 37.03 4.44
6036 8063 1.666872 CAAAGGCAAGCAAGCTGGC 60.667 57.895 12.99 12.99 42.09 4.85
6037 8064 0.599204 CACAAAGGCAAGCAAGCTGG 60.599 55.000 0.00 0.00 34.17 4.85
6038 8065 0.599204 CCACAAAGGCAAGCAAGCTG 60.599 55.000 0.00 0.00 34.17 4.24
6039 8066 1.044790 ACCACAAAGGCAAGCAAGCT 61.045 50.000 0.36 0.00 43.14 3.74
6040 8067 0.877213 CACCACAAAGGCAAGCAAGC 60.877 55.000 0.00 0.00 43.14 4.01
6041 8068 0.746063 TCACCACAAAGGCAAGCAAG 59.254 50.000 0.00 0.00 43.14 4.01
6042 8069 1.412079 ATCACCACAAAGGCAAGCAA 58.588 45.000 0.00 0.00 43.14 3.91
6043 8070 1.412079 AATCACCACAAAGGCAAGCA 58.588 45.000 0.00 0.00 43.14 3.91
6044 8071 2.137523 CAAATCACCACAAAGGCAAGC 58.862 47.619 0.00 0.00 43.14 4.01
6045 8072 2.364970 TCCAAATCACCACAAAGGCAAG 59.635 45.455 0.00 0.00 43.14 4.01
6046 8073 2.392662 TCCAAATCACCACAAAGGCAA 58.607 42.857 0.00 0.00 43.14 4.52
6047 8074 2.079170 TCCAAATCACCACAAAGGCA 57.921 45.000 0.00 0.00 43.14 4.75
6048 8075 2.627699 TCTTCCAAATCACCACAAAGGC 59.372 45.455 0.00 0.00 43.14 4.35
6049 8076 4.935352 TTCTTCCAAATCACCACAAAGG 57.065 40.909 0.00 0.00 45.67 3.11
6050 8077 7.790823 AAAATTCTTCCAAATCACCACAAAG 57.209 32.000 0.00 0.00 0.00 2.77
6051 8078 7.826252 TCAAAAATTCTTCCAAATCACCACAAA 59.174 29.630 0.00 0.00 0.00 2.83
6052 8079 7.334090 TCAAAAATTCTTCCAAATCACCACAA 58.666 30.769 0.00 0.00 0.00 3.33
6053 8080 6.882656 TCAAAAATTCTTCCAAATCACCACA 58.117 32.000 0.00 0.00 0.00 4.17
6054 8081 7.784633 TTCAAAAATTCTTCCAAATCACCAC 57.215 32.000 0.00 0.00 0.00 4.16
6055 8082 8.977267 AATTCAAAAATTCTTCCAAATCACCA 57.023 26.923 0.00 0.00 28.70 4.17
6056 8083 8.506437 GGAATTCAAAAATTCTTCCAAATCACC 58.494 33.333 7.93 0.00 46.65 4.02
6057 8084 8.506437 GGGAATTCAAAAATTCTTCCAAATCAC 58.494 33.333 7.93 0.00 46.65 3.06
6058 8085 8.216423 TGGGAATTCAAAAATTCTTCCAAATCA 58.784 29.630 7.93 0.00 46.65 2.57
6059 8086 8.620116 TGGGAATTCAAAAATTCTTCCAAATC 57.380 30.769 7.93 0.00 46.65 2.17
6060 8087 9.016438 CATGGGAATTCAAAAATTCTTCCAAAT 57.984 29.630 7.93 0.00 46.65 2.32
6061 8088 8.216423 TCATGGGAATTCAAAAATTCTTCCAAA 58.784 29.630 7.93 2.62 46.65 3.28
6062 8089 7.743749 TCATGGGAATTCAAAAATTCTTCCAA 58.256 30.769 7.93 0.00 46.65 3.53
6063 8090 7.313740 TCATGGGAATTCAAAAATTCTTCCA 57.686 32.000 7.93 9.79 46.65 3.53
6064 8091 8.620116 TTTCATGGGAATTCAAAAATTCTTCC 57.380 30.769 7.93 5.45 46.65 3.46
6091 8118 4.948004 AGGAAGAACAACTCGAACCTTTTT 59.052 37.500 0.00 0.00 0.00 1.94
6092 8119 4.524053 AGGAAGAACAACTCGAACCTTTT 58.476 39.130 0.00 0.00 0.00 2.27
6093 8120 4.152284 AGGAAGAACAACTCGAACCTTT 57.848 40.909 0.00 0.00 0.00 3.11
6094 8121 3.840124 AGGAAGAACAACTCGAACCTT 57.160 42.857 0.00 0.00 0.00 3.50
6095 8122 4.283722 ACATAGGAAGAACAACTCGAACCT 59.716 41.667 0.00 0.00 33.01 3.50
6096 8123 4.566987 ACATAGGAAGAACAACTCGAACC 58.433 43.478 0.00 0.00 0.00 3.62
6097 8124 6.388278 AGTACATAGGAAGAACAACTCGAAC 58.612 40.000 0.00 0.00 0.00 3.95
6098 8125 6.208007 TGAGTACATAGGAAGAACAACTCGAA 59.792 38.462 0.00 0.00 35.90 3.71
6099 8126 5.708697 TGAGTACATAGGAAGAACAACTCGA 59.291 40.000 0.00 0.00 35.90 4.04
6100 8127 5.950883 TGAGTACATAGGAAGAACAACTCG 58.049 41.667 0.00 0.00 35.90 4.18
6101 8128 7.121463 TCTCTGAGTACATAGGAAGAACAACTC 59.879 40.741 4.32 0.00 34.18 3.01
6102 8129 6.948886 TCTCTGAGTACATAGGAAGAACAACT 59.051 38.462 4.32 0.00 0.00 3.16
6103 8130 7.159322 TCTCTGAGTACATAGGAAGAACAAC 57.841 40.000 4.32 0.00 0.00 3.32
6104 8131 7.776618 TTCTCTGAGTACATAGGAAGAACAA 57.223 36.000 4.32 0.00 0.00 2.83
6105 8132 7.776618 TTTCTCTGAGTACATAGGAAGAACA 57.223 36.000 4.32 0.00 0.00 3.18
6106 8133 9.959749 CTATTTCTCTGAGTACATAGGAAGAAC 57.040 37.037 4.32 0.00 0.00 3.01
6107 8134 9.922477 TCTATTTCTCTGAGTACATAGGAAGAA 57.078 33.333 4.32 0.00 0.00 2.52
6108 8135 9.922477 TTCTATTTCTCTGAGTACATAGGAAGA 57.078 33.333 4.32 0.00 0.00 2.87
6109 8136 9.959749 GTTCTATTTCTCTGAGTACATAGGAAG 57.040 37.037 4.32 0.00 0.00 3.46
6110 8137 9.702253 AGTTCTATTTCTCTGAGTACATAGGAA 57.298 33.333 4.32 0.61 0.00 3.36
6128 8155 9.941325 CTGCCATTCTCAGAATATAGTTCTATT 57.059 33.333 0.00 0.00 33.54 1.73
6129 8156 9.099071 ACTGCCATTCTCAGAATATAGTTCTAT 57.901 33.333 0.00 0.00 35.61 1.98
6130 8157 8.484214 ACTGCCATTCTCAGAATATAGTTCTA 57.516 34.615 0.00 0.00 35.61 2.10
6131 8158 7.372260 ACTGCCATTCTCAGAATATAGTTCT 57.628 36.000 0.00 0.00 35.61 3.01
6132 8159 6.648725 GGACTGCCATTCTCAGAATATAGTTC 59.351 42.308 0.00 0.53 35.61 3.01
6133 8160 6.100279 TGGACTGCCATTCTCAGAATATAGTT 59.900 38.462 0.00 0.00 39.92 2.24
6134 8161 5.604231 TGGACTGCCATTCTCAGAATATAGT 59.396 40.000 0.00 4.97 39.92 2.12
6135 8162 6.106648 TGGACTGCCATTCTCAGAATATAG 57.893 41.667 0.00 1.78 39.92 1.31
6136 8163 6.499106 TTGGACTGCCATTCTCAGAATATA 57.501 37.500 0.00 0.00 45.46 0.86
6137 8164 5.378230 TTGGACTGCCATTCTCAGAATAT 57.622 39.130 0.00 0.00 45.46 1.28
6138 8165 4.842531 TTGGACTGCCATTCTCAGAATA 57.157 40.909 0.00 0.00 45.46 1.75
6139 8166 3.726557 TTGGACTGCCATTCTCAGAAT 57.273 42.857 0.00 0.00 45.46 2.40
6140 8167 3.265221 AGATTGGACTGCCATTCTCAGAA 59.735 43.478 0.00 0.00 46.68 3.02
6141 8168 2.842496 AGATTGGACTGCCATTCTCAGA 59.158 45.455 0.00 0.00 46.68 3.27
6142 8169 3.278668 AGATTGGACTGCCATTCTCAG 57.721 47.619 0.00 0.00 46.68 3.35
6163 8190 6.424883 TCCAAGTACCCTGTTGAACTAAAAA 58.575 36.000 0.00 0.00 0.00 1.94
6164 8191 6.003859 TCCAAGTACCCTGTTGAACTAAAA 57.996 37.500 0.00 0.00 0.00 1.52
6165 8192 5.633655 TCCAAGTACCCTGTTGAACTAAA 57.366 39.130 0.00 0.00 0.00 1.85
6166 8193 5.633655 TTCCAAGTACCCTGTTGAACTAA 57.366 39.130 0.00 0.00 0.00 2.24
6167 8194 5.514136 CCATTCCAAGTACCCTGTTGAACTA 60.514 44.000 0.00 0.00 0.00 2.24
6180 8207 1.839994 CCTCTCAGCCCATTCCAAGTA 59.160 52.381 0.00 0.00 0.00 2.24
6219 8246 8.216423 ACCATTTACAGCAGATTCTCAGAATAT 58.784 33.333 0.00 0.00 0.00 1.28
6226 8253 6.341316 TCACTACCATTTACAGCAGATTCTC 58.659 40.000 0.00 0.00 0.00 2.87
6320 8715 3.397439 ATGTGCGCCTCTCTGCCT 61.397 61.111 4.18 0.00 0.00 4.75
6321 8716 3.200593 CATGTGCGCCTCTCTGCC 61.201 66.667 4.18 0.00 0.00 4.85
6337 8732 0.476338 TCAGCCCAAGTGGTAAAGCA 59.524 50.000 0.00 0.00 36.04 3.91
6358 8753 5.348164 AGTACATGTTTCCACAAAAACTGC 58.652 37.500 2.30 0.00 39.39 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.