Multiple sequence alignment - TraesCS4A01G298100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G298100 chr4A 100.000 4116 0 0 1344 5459 596923374 596919259 0.000000e+00 7601.0
1 TraesCS4A01G298100 chr4A 100.000 1049 0 0 1 1049 596924717 596923669 0.000000e+00 1938.0
2 TraesCS4A01G298100 chr4A 97.126 174 5 0 2910 3083 546625016 546624843 1.490000e-75 294.0
3 TraesCS4A01G298100 chr4A 89.655 174 15 3 520 690 567655041 567654868 9.210000e-53 219.0
4 TraesCS4A01G298100 chr4A 90.132 152 9 3 375 526 567666085 567665940 5.580000e-45 193.0
5 TraesCS4A01G298100 chr4D 96.116 2317 72 9 3147 5459 6493784 6496086 0.000000e+00 3764.0
6 TraesCS4A01G298100 chr4D 85.656 739 73 16 2200 2912 6493016 6493747 0.000000e+00 747.0
7 TraesCS4A01G298100 chr4D 94.004 467 26 1 1344 1808 6492180 6492646 0.000000e+00 706.0
8 TraesCS4A01G298100 chr4D 93.011 372 15 8 673 1044 6491825 6492185 2.890000e-147 532.0
9 TraesCS4A01G298100 chr4D 90.520 327 23 3 1824 2150 6492702 6493020 5.050000e-115 425.0
10 TraesCS4A01G298100 chr4B 88.725 1224 90 23 3086 4279 11673845 11675050 0.000000e+00 1452.0
11 TraesCS4A01G298100 chr4B 85.978 813 82 15 4273 5084 11675306 11676087 0.000000e+00 841.0
12 TraesCS4A01G298100 chr4B 94.030 469 24 2 1344 1808 11672282 11672750 0.000000e+00 708.0
13 TraesCS4A01G298100 chr4B 82.401 733 76 17 2202 2912 11673154 11673855 1.690000e-164 590.0
14 TraesCS4A01G298100 chr4B 92.388 381 20 6 5083 5459 11676116 11676491 8.050000e-148 534.0
15 TraesCS4A01G298100 chr4B 92.351 353 26 1 1824 2175 11672806 11673158 8.160000e-138 501.0
16 TraesCS4A01G298100 chr4B 90.026 381 21 6 674 1044 11671914 11672287 1.380000e-130 477.0
17 TraesCS4A01G298100 chr6B 90.492 305 16 6 372 674 300719248 300719541 1.840000e-104 390.0
18 TraesCS4A01G298100 chr6D 88.545 323 24 9 372 690 161976619 161976306 3.990000e-101 379.0
19 TraesCS4A01G298100 chr6A 88.545 323 24 7 372 690 221347357 221347044 3.990000e-101 379.0
20 TraesCS4A01G298100 chr6A 87.963 216 20 6 94 308 35994306 35994516 3.260000e-62 250.0
21 TraesCS4A01G298100 chr6A 87.603 121 13 2 96 216 36004743 36004625 7.370000e-29 139.0
22 TraesCS4A01G298100 chr5D 89.389 311 20 7 365 674 137059952 137060250 3.990000e-101 379.0
23 TraesCS4A01G298100 chr5D 85.714 154 19 3 89 241 137059335 137059486 5.660000e-35 159.0
24 TraesCS4A01G298100 chr5A 88.037 326 26 6 368 690 370170857 370171172 1.860000e-99 374.0
25 TraesCS4A01G298100 chr5A 93.814 194 9 2 2893 3086 377183634 377183444 6.920000e-74 289.0
26 TraesCS4A01G298100 chr2B 88.037 326 26 6 368 690 633583854 633583539 1.860000e-99 374.0
27 TraesCS4A01G298100 chr2B 94.241 191 9 1 2911 3099 184124219 184124029 1.920000e-74 291.0
28 TraesCS4A01G298100 chr7A 97.143 175 4 1 2904 3078 630034515 630034342 1.490000e-75 294.0
29 TraesCS4A01G298100 chr2A 96.610 177 6 0 2900 3076 166842437 166842261 1.490000e-75 294.0
30 TraesCS4A01G298100 chr2A 88.261 230 18 7 86 311 155746604 155746828 3.240000e-67 267.0
31 TraesCS4A01G298100 chr1B 97.126 174 5 0 2911 3084 47635567 47635740 1.490000e-75 294.0
32 TraesCS4A01G298100 chr1B 97.126 174 5 0 2905 3078 158536311 158536138 1.490000e-75 294.0
33 TraesCS4A01G298100 chr3B 96.111 180 6 1 2911 3089 168268376 168268197 5.350000e-75 292.0
34 TraesCS4A01G298100 chr3B 86.735 98 13 0 676 773 562903465 562903368 5.780000e-20 110.0
35 TraesCS4A01G298100 chr5B 88.571 245 20 5 448 690 186149588 186149826 1.920000e-74 291.0
36 TraesCS4A01G298100 chr5B 92.647 204 11 4 2878 3078 209646419 209646217 1.920000e-74 291.0
37 TraesCS4A01G298100 chr5B 89.899 99 9 1 673 770 530653503 530653601 5.740000e-25 126.0
38 TraesCS4A01G298100 chr7D 84.456 193 23 4 89 281 200771078 200771263 3.360000e-42 183.0
39 TraesCS4A01G298100 chr1D 90.909 132 8 4 86 216 436109184 436109056 2.020000e-39 174.0
40 TraesCS4A01G298100 chr1D 92.473 93 7 0 673 765 293617095 293617187 3.430000e-27 134.0
41 TraesCS4A01G298100 chr1D 89.474 95 10 0 676 770 474355054 474355148 2.670000e-23 121.0
42 TraesCS4A01G298100 chr1D 85.859 99 12 2 673 771 451069071 451069167 2.690000e-18 104.0
43 TraesCS4A01G298100 chr7B 89.796 98 10 0 673 770 80091464 80091367 5.740000e-25 126.0
44 TraesCS4A01G298100 chr3D 92.857 84 6 0 676 759 571044384 571044301 7.430000e-24 122.0
45 TraesCS4A01G298100 chr3D 100.000 35 0 0 640 674 487239700 487239734 1.270000e-06 65.8
46 TraesCS4A01G298100 chr1A 88.421 95 11 0 676 770 568698858 568698952 1.240000e-21 115.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G298100 chr4A 596919259 596924717 5458 True 4769.5 7601 100.000000 1 5459 2 chr4A.!!$R4 5458
1 TraesCS4A01G298100 chr4D 6491825 6496086 4261 False 1234.8 3764 91.861400 673 5459 5 chr4D.!!$F1 4786
2 TraesCS4A01G298100 chr4B 11671914 11676491 4577 False 729.0 1452 89.414143 674 5459 7 chr4B.!!$F1 4785
3 TraesCS4A01G298100 chr5D 137059335 137060250 915 False 269.0 379 87.551500 89 674 2 chr5D.!!$F1 585

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
31 32 0.040067 GCTGTTGGTAGCACTTGTGC 60.040 55.0 16.98 16.98 43.17 4.57 F
380 741 0.104304 GCGATTGGTGGGTCGTATCT 59.896 55.0 0.00 0.00 39.87 1.98 F
1044 1415 0.105709 CCTTCTCCTCCTCCTCCTCC 60.106 65.0 0.00 0.00 0.00 4.30 F
1602 1975 0.321671 CAGCTTTCTCCCTCGGTTCA 59.678 55.0 0.00 0.00 0.00 3.18 F
2198 2614 0.030504 CCACTGCATCAACACGCAAA 59.969 50.0 0.00 0.00 37.76 3.68 F
2923 3369 0.033208 TTTAATGAGGGCAGGCCTGG 60.033 55.0 33.46 15.81 36.10 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1780 2153 0.033228 CTAGGAATCCGAGCAGCTGG 59.967 60.0 17.12 0.0 0.00 4.85 R
2179 2595 0.030504 TTTGCGTGTTGATGCAGTGG 59.969 50.0 0.00 0.0 44.96 4.00 R
2185 2601 0.031857 TTGCCCTTTGCGTGTTGATG 59.968 50.0 0.00 0.0 45.60 3.07 R
2904 3350 0.033208 CCAGGCCTGCCCTCATTAAA 60.033 55.0 28.39 0.0 44.09 1.52 R
3047 3493 0.179034 CCAGGTGCATAGAAGCTCCC 60.179 60.0 0.00 0.0 46.57 4.30 R
4479 5215 0.597377 CCAGTTTGAACCGCCTTTGC 60.597 55.0 0.00 0.0 0.00 3.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 3.267974 GCTGTGGCTGTTGGTAGC 58.732 61.111 0.00 0.00 42.94 3.58
24 25 1.600636 GCTGTGGCTGTTGGTAGCA 60.601 57.895 0.00 0.00 45.46 3.49
25 26 1.856265 GCTGTGGCTGTTGGTAGCAC 61.856 60.000 0.00 0.00 45.46 4.40
26 27 0.250467 CTGTGGCTGTTGGTAGCACT 60.250 55.000 0.00 0.00 45.46 4.40
27 28 0.182537 TGTGGCTGTTGGTAGCACTT 59.817 50.000 0.00 0.00 45.46 3.16
28 29 0.593128 GTGGCTGTTGGTAGCACTTG 59.407 55.000 0.00 0.00 45.46 3.16
29 30 0.182537 TGGCTGTTGGTAGCACTTGT 59.817 50.000 0.00 0.00 45.46 3.16
30 31 0.593128 GGCTGTTGGTAGCACTTGTG 59.407 55.000 0.00 0.00 45.46 3.33
31 32 0.040067 GCTGTTGGTAGCACTTGTGC 60.040 55.000 16.98 16.98 43.17 4.57
32 33 1.308047 CTGTTGGTAGCACTTGTGCA 58.692 50.000 24.82 10.35 37.25 4.57
33 34 1.265095 CTGTTGGTAGCACTTGTGCAG 59.735 52.381 24.82 9.88 37.25 4.41
34 35 0.040067 GTTGGTAGCACTTGTGCAGC 60.040 55.000 24.82 19.25 37.25 5.25
35 36 0.465278 TTGGTAGCACTTGTGCAGCA 60.465 50.000 24.82 21.10 37.25 4.41
36 37 1.165907 TGGTAGCACTTGTGCAGCAC 61.166 55.000 24.82 19.37 37.25 4.40
37 38 0.886490 GGTAGCACTTGTGCAGCACT 60.886 55.000 25.83 7.50 35.11 4.40
38 39 1.608025 GGTAGCACTTGTGCAGCACTA 60.608 52.381 25.83 17.79 35.11 2.74
39 40 1.728971 GTAGCACTTGTGCAGCACTAG 59.271 52.381 28.75 28.75 41.50 2.57
41 42 0.514691 GCACTTGTGCAGCACTAGTC 59.485 55.000 31.93 23.58 44.27 2.59
42 43 1.875576 GCACTTGTGCAGCACTAGTCT 60.876 52.381 31.93 15.14 44.27 3.24
43 44 2.610479 GCACTTGTGCAGCACTAGTCTA 60.610 50.000 31.93 8.19 44.27 2.59
44 45 3.249091 CACTTGTGCAGCACTAGTCTAG 58.751 50.000 31.93 20.73 44.27 2.43
45 46 3.057245 CACTTGTGCAGCACTAGTCTAGA 60.057 47.826 31.93 6.74 44.27 2.43
46 47 3.057174 ACTTGTGCAGCACTAGTCTAGAC 60.057 47.826 29.94 15.41 44.27 2.59
47 48 2.514803 TGTGCAGCACTAGTCTAGACA 58.485 47.619 25.83 9.82 35.11 3.41
48 49 3.092301 TGTGCAGCACTAGTCTAGACAT 58.908 45.455 25.83 12.01 35.11 3.06
49 50 3.119352 TGTGCAGCACTAGTCTAGACATG 60.119 47.826 25.83 18.70 35.11 3.21
50 51 3.129462 GTGCAGCACTAGTCTAGACATGA 59.871 47.826 24.44 8.60 0.00 3.07
51 52 3.956848 TGCAGCACTAGTCTAGACATGAT 59.043 43.478 24.44 14.85 0.00 2.45
52 53 4.202090 TGCAGCACTAGTCTAGACATGATG 60.202 45.833 24.44 24.42 33.46 3.07
53 54 4.202101 GCAGCACTAGTCTAGACATGATGT 60.202 45.833 26.84 15.96 33.13 3.06
54 55 5.680922 GCAGCACTAGTCTAGACATGATGTT 60.681 44.000 26.84 15.88 33.13 2.71
55 56 6.336566 CAGCACTAGTCTAGACATGATGTTT 58.663 40.000 24.44 4.04 0.00 2.83
56 57 6.815641 CAGCACTAGTCTAGACATGATGTTTT 59.184 38.462 24.44 3.32 0.00 2.43
57 58 7.976175 CAGCACTAGTCTAGACATGATGTTTTA 59.024 37.037 24.44 4.33 0.00 1.52
58 59 8.531982 AGCACTAGTCTAGACATGATGTTTTAA 58.468 33.333 24.44 0.00 0.00 1.52
59 60 9.319143 GCACTAGTCTAGACATGATGTTTTAAT 57.681 33.333 24.44 1.87 0.00 1.40
68 69 8.523915 AGACATGATGTTTTAATAGATTGGCA 57.476 30.769 0.00 0.00 0.00 4.92
69 70 8.970020 AGACATGATGTTTTAATAGATTGGCAA 58.030 29.630 0.68 0.68 0.00 4.52
70 71 9.585099 GACATGATGTTTTAATAGATTGGCAAA 57.415 29.630 3.01 0.00 0.00 3.68
71 72 9.369904 ACATGATGTTTTAATAGATTGGCAAAC 57.630 29.630 3.01 0.42 0.00 2.93
72 73 9.368674 CATGATGTTTTAATAGATTGGCAAACA 57.631 29.630 3.01 0.51 38.22 2.83
73 74 8.755696 TGATGTTTTAATAGATTGGCAAACAC 57.244 30.769 3.01 0.00 37.05 3.32
74 75 8.363390 TGATGTTTTAATAGATTGGCAAACACA 58.637 29.630 3.01 0.36 37.05 3.72
75 76 9.369904 GATGTTTTAATAGATTGGCAAACACAT 57.630 29.630 3.01 5.58 37.05 3.21
86 87 9.461312 AGATTGGCAAACACATATAGACTAAAA 57.539 29.630 3.01 0.00 0.00 1.52
87 88 9.503427 GATTGGCAAACACATATAGACTAAAAC 57.497 33.333 3.01 0.00 0.00 2.43
103 104 8.658499 AGACTAAAACGTATCAAGTGAAAACT 57.342 30.769 0.00 0.00 0.00 2.66
105 106 9.155053 GACTAAAACGTATCAAGTGAAAACTTG 57.845 33.333 11.49 11.49 46.11 3.16
136 137 6.015095 AGTGAAAATCTGGAAACTTTGATCCC 60.015 38.462 0.00 0.00 34.68 3.85
139 140 3.154827 TCTGGAAACTTTGATCCCACC 57.845 47.619 0.00 0.00 34.68 4.61
150 151 1.307866 ATCCCACCCCGTTGGATCT 60.308 57.895 0.00 0.00 33.57 2.75
160 161 1.393539 CCGTTGGATCTGTAGCAAACG 59.606 52.381 0.00 0.00 39.90 3.60
161 162 2.333926 CGTTGGATCTGTAGCAAACGA 58.666 47.619 0.00 0.00 42.06 3.85
167 168 3.553511 GGATCTGTAGCAAACGACATCTG 59.446 47.826 0.00 0.00 30.56 2.90
175 176 2.578495 CAAACGACATCTGCTCAAAGC 58.422 47.619 0.00 0.00 42.82 3.51
193 194 1.073722 CAAGAGCTCCCACCAGCAA 59.926 57.895 10.93 0.00 42.40 3.91
203 204 2.028130 CCCACCAGCAACTTAAACACA 58.972 47.619 0.00 0.00 0.00 3.72
204 205 2.428890 CCCACCAGCAACTTAAACACAA 59.571 45.455 0.00 0.00 0.00 3.33
216 217 7.845622 GCAACTTAAACACAAATTAGCACAAAG 59.154 33.333 0.00 0.00 0.00 2.77
217 218 8.868916 CAACTTAAACACAAATTAGCACAAAGT 58.131 29.630 0.00 0.00 0.00 2.66
219 220 8.466798 ACTTAAACACAAATTAGCACAAAGTCT 58.533 29.630 0.00 0.00 0.00 3.24
224 225 5.705441 CACAAATTAGCACAAAGTCTCCCTA 59.295 40.000 0.00 0.00 0.00 3.53
225 226 5.705905 ACAAATTAGCACAAAGTCTCCCTAC 59.294 40.000 0.00 0.00 0.00 3.18
241 242 6.380560 GTCTCCCTACTTCCTAGTAATGTTGT 59.619 42.308 0.00 0.00 36.46 3.32
242 243 6.606395 TCTCCCTACTTCCTAGTAATGTTGTC 59.394 42.308 0.00 0.00 36.46 3.18
243 244 6.258354 TCCCTACTTCCTAGTAATGTTGTCA 58.742 40.000 0.00 0.00 36.46 3.58
244 245 6.380274 TCCCTACTTCCTAGTAATGTTGTCAG 59.620 42.308 0.00 0.00 36.46 3.51
245 246 6.407074 CCCTACTTCCTAGTAATGTTGTCAGG 60.407 46.154 0.00 0.00 36.46 3.86
246 247 6.154706 CCTACTTCCTAGTAATGTTGTCAGGT 59.845 42.308 0.00 0.00 36.46 4.00
247 248 6.435292 ACTTCCTAGTAATGTTGTCAGGTT 57.565 37.500 0.00 0.00 31.21 3.50
248 249 6.838382 ACTTCCTAGTAATGTTGTCAGGTTT 58.162 36.000 0.00 0.00 31.21 3.27
249 250 7.287810 ACTTCCTAGTAATGTTGTCAGGTTTT 58.712 34.615 0.00 0.00 31.21 2.43
250 251 7.778382 ACTTCCTAGTAATGTTGTCAGGTTTTT 59.222 33.333 0.00 0.00 31.21 1.94
285 286 1.236282 CCCTCCCGTTCCTATCCCT 59.764 63.158 0.00 0.00 0.00 4.20
300 301 0.178068 TCCCTCAGCGAAATAGCCAC 59.822 55.000 0.00 0.00 38.01 5.01
303 304 0.460284 CTCAGCGAAATAGCCACGGT 60.460 55.000 0.00 0.00 38.01 4.83
305 306 1.594833 AGCGAAATAGCCACGGTGA 59.405 52.632 10.28 0.00 38.01 4.02
318 319 3.250986 GGTGACGCCGAGGTTTTC 58.749 61.111 0.00 0.00 0.00 2.29
319 320 1.595929 GGTGACGCCGAGGTTTTCA 60.596 57.895 0.00 0.00 0.00 2.69
320 321 0.953960 GGTGACGCCGAGGTTTTCAT 60.954 55.000 0.00 0.00 0.00 2.57
321 322 0.165944 GTGACGCCGAGGTTTTCATG 59.834 55.000 0.00 0.00 0.00 3.07
322 323 0.250124 TGACGCCGAGGTTTTCATGT 60.250 50.000 0.00 0.00 0.00 3.21
324 325 2.070783 GACGCCGAGGTTTTCATGTAA 58.929 47.619 0.00 0.00 0.00 2.41
325 326 2.481185 GACGCCGAGGTTTTCATGTAAA 59.519 45.455 0.00 0.00 0.00 2.01
326 327 3.078837 ACGCCGAGGTTTTCATGTAAAT 58.921 40.909 0.55 0.00 0.00 1.40
327 328 3.504520 ACGCCGAGGTTTTCATGTAAATT 59.495 39.130 0.55 0.00 0.00 1.82
330 331 4.173256 CCGAGGTTTTCATGTAAATTGGC 58.827 43.478 0.55 0.00 0.00 4.52
331 332 4.321601 CCGAGGTTTTCATGTAAATTGGCA 60.322 41.667 0.55 0.00 0.00 4.92
332 333 5.410067 CGAGGTTTTCATGTAAATTGGCAT 58.590 37.500 0.55 0.00 0.00 4.40
333 334 6.405286 CCGAGGTTTTCATGTAAATTGGCATA 60.405 38.462 0.55 0.00 0.00 3.14
334 335 7.032580 CGAGGTTTTCATGTAAATTGGCATAA 58.967 34.615 0.55 0.00 0.00 1.90
336 337 8.721019 AGGTTTTCATGTAAATTGGCATAATG 57.279 30.769 0.55 0.00 0.00 1.90
350 351 3.952535 GCATAATGCCTTAGTTCCGTTG 58.047 45.455 0.00 0.00 37.42 4.10
352 353 1.173913 AATGCCTTAGTTCCGTTGCC 58.826 50.000 0.00 0.00 0.00 4.52
353 354 1.024579 ATGCCTTAGTTCCGTTGCCG 61.025 55.000 0.00 0.00 0.00 5.69
355 356 0.743345 GCCTTAGTTCCGTTGCCGAT 60.743 55.000 0.00 0.00 35.63 4.18
356 357 1.006832 CCTTAGTTCCGTTGCCGATG 58.993 55.000 0.00 0.00 35.63 3.84
357 358 1.674817 CCTTAGTTCCGTTGCCGATGT 60.675 52.381 0.00 0.00 35.63 3.06
358 359 2.073816 CTTAGTTCCGTTGCCGATGTT 58.926 47.619 0.00 0.00 35.63 2.71
360 361 0.534203 AGTTCCGTTGCCGATGTTGT 60.534 50.000 0.00 0.00 35.63 3.32
363 364 2.499520 CGTTGCCGATGTTGTGCG 60.500 61.111 0.00 0.00 35.63 5.34
364 365 2.942879 GTTGCCGATGTTGTGCGA 59.057 55.556 0.00 0.00 0.00 5.10
365 366 1.501741 GTTGCCGATGTTGTGCGAT 59.498 52.632 0.00 0.00 0.00 4.58
366 367 0.109781 GTTGCCGATGTTGTGCGATT 60.110 50.000 0.00 0.00 0.00 3.34
367 368 0.109827 TTGCCGATGTTGTGCGATTG 60.110 50.000 0.00 0.00 0.00 2.67
368 369 1.226379 GCCGATGTTGTGCGATTGG 60.226 57.895 0.00 0.00 0.00 3.16
369 370 1.922135 GCCGATGTTGTGCGATTGGT 61.922 55.000 0.00 0.00 0.00 3.67
370 371 0.179192 CCGATGTTGTGCGATTGGTG 60.179 55.000 0.00 0.00 0.00 4.17
375 736 1.963855 TTGTGCGATTGGTGGGTCG 60.964 57.895 0.00 0.00 40.62 4.79
380 741 0.104304 GCGATTGGTGGGTCGTATCT 59.896 55.000 0.00 0.00 39.87 1.98
391 752 5.221382 GGTGGGTCGTATCTTGTATGTGTAT 60.221 44.000 0.00 0.00 0.00 2.29
415 776 2.982744 GAGCCCGTCCAGCAAAAGC 61.983 63.158 0.00 0.00 0.00 3.51
416 777 4.404654 GCCCGTCCAGCAAAAGCG 62.405 66.667 0.00 0.00 0.00 4.68
419 780 2.427410 CGTCCAGCAAAAGCGTGC 60.427 61.111 2.26 2.26 45.28 5.34
440 801 6.089820 CGTGCTGCAATTTTCATGTAAATTCT 59.910 34.615 17.23 0.00 35.98 2.40
441 802 7.231607 GTGCTGCAATTTTCATGTAAATTCTG 58.768 34.615 17.23 15.57 35.98 3.02
443 804 7.116662 TGCTGCAATTTTCATGTAAATTCTGTC 59.883 33.333 17.23 9.74 35.98 3.51
454 815 9.696572 TCATGTAAATTCTGTCTAGGTAGTAGT 57.303 33.333 0.00 0.00 0.00 2.73
463 824 9.781633 TTCTGTCTAGGTAGTAGTATCTGATTC 57.218 37.037 0.21 0.00 0.00 2.52
464 825 9.161572 TCTGTCTAGGTAGTAGTATCTGATTCT 57.838 37.037 0.21 0.00 0.00 2.40
483 844 4.785511 TCTAGAGTGTGAAGTTGTAGCC 57.214 45.455 0.00 0.00 0.00 3.93
504 865 4.141482 GCCCCTCCTAATTCTTGATGTACA 60.141 45.833 0.00 0.00 0.00 2.90
550 911 4.154375 GCTCCTCCTTTGTAAACTTGTAGC 59.846 45.833 0.00 0.00 0.00 3.58
556 917 7.040409 CCTCCTTTGTAAACTTGTAGCTGAATT 60.040 37.037 0.00 0.00 0.00 2.17
584 945 6.961359 TGTATTACCACTCAAGATTCAACG 57.039 37.500 0.00 0.00 0.00 4.10
585 946 5.872617 TGTATTACCACTCAAGATTCAACGG 59.127 40.000 0.00 0.00 0.00 4.44
624 985 6.605471 TTTGTATGACTACTGATGGAGTGT 57.395 37.500 0.00 0.00 35.96 3.55
632 993 6.266786 TGACTACTGATGGAGTGTCTTGTTTA 59.733 38.462 0.00 0.00 35.46 2.01
637 998 6.874134 ACTGATGGAGTGTCTTGTTTATACAC 59.126 38.462 0.00 0.00 43.02 2.90
685 1046 3.315191 TGCAACTAGCTCTTGAAAACACC 59.685 43.478 8.00 0.00 45.94 4.16
710 1071 2.201732 TCGCGGTATCAATTTCTGCTC 58.798 47.619 6.13 0.00 0.00 4.26
727 1088 5.171476 TCTGCTCGAAGAAATACTCCAAAG 58.829 41.667 0.00 0.00 34.09 2.77
729 1090 5.171476 TGCTCGAAGAAATACTCCAAAGAG 58.829 41.667 0.00 0.00 40.95 2.85
733 1094 6.868864 CTCGAAGAAATACTCCAAAGAGTTCA 59.131 38.462 0.36 0.00 44.48 3.18
755 1116 0.883833 AAAGAGGCTGCAATTGGACG 59.116 50.000 7.72 0.00 0.00 4.79
763 1124 2.026641 CTGCAATTGGACGGGATCAAT 58.973 47.619 7.72 0.00 35.37 2.57
765 1126 2.023673 GCAATTGGACGGGATCAATGA 58.976 47.619 7.72 0.00 34.28 2.57
767 1128 3.551454 GCAATTGGACGGGATCAATGATG 60.551 47.826 7.72 0.00 34.28 3.07
831 1202 2.413310 TGGCTTAAATCTTCCGACCC 57.587 50.000 0.00 0.00 0.00 4.46
832 1203 1.631388 TGGCTTAAATCTTCCGACCCA 59.369 47.619 0.00 0.00 0.00 4.51
836 1207 1.209621 TAAATCTTCCGACCCAGGGG 58.790 55.000 11.37 6.87 42.03 4.79
1044 1415 0.105709 CCTTCTCCTCCTCCTCCTCC 60.106 65.000 0.00 0.00 0.00 4.30
1045 1416 0.933700 CTTCTCCTCCTCCTCCTCCT 59.066 60.000 0.00 0.00 0.00 3.69
1046 1417 0.930726 TTCTCCTCCTCCTCCTCCTC 59.069 60.000 0.00 0.00 0.00 3.71
1047 1418 0.996762 TCTCCTCCTCCTCCTCCTCC 60.997 65.000 0.00 0.00 0.00 4.30
1048 1419 0.998945 CTCCTCCTCCTCCTCCTCCT 60.999 65.000 0.00 0.00 0.00 3.69
1373 1744 2.525629 TCTTCCGTGGCACCCAGA 60.526 61.111 12.86 7.96 32.34 3.86
1602 1975 0.321671 CAGCTTTCTCCCTCGGTTCA 59.678 55.000 0.00 0.00 0.00 3.18
1612 1985 0.324943 CCTCGGTTCATGGTCTGGTT 59.675 55.000 0.00 0.00 0.00 3.67
1627 2000 2.568090 GTTTGCGGTGCTCATGGG 59.432 61.111 0.00 0.00 0.00 4.00
1630 2003 1.523154 TTTGCGGTGCTCATGGGTTC 61.523 55.000 0.00 0.00 0.00 3.62
1765 2138 1.417890 GCCCCTTAATCTCTGCTGCTA 59.582 52.381 0.00 0.00 0.00 3.49
1768 2141 4.622695 GCCCCTTAATCTCTGCTGCTATAG 60.623 50.000 0.00 0.00 0.00 1.31
1780 2153 2.798680 CTGCTATAGTCCGTGTGTGTC 58.201 52.381 0.84 0.00 0.00 3.67
1781 2154 1.475280 TGCTATAGTCCGTGTGTGTCC 59.525 52.381 0.84 0.00 0.00 4.02
1782 2155 1.475280 GCTATAGTCCGTGTGTGTCCA 59.525 52.381 0.84 0.00 0.00 4.02
1783 2156 2.479730 GCTATAGTCCGTGTGTGTCCAG 60.480 54.545 0.84 0.00 0.00 3.86
1791 2166 2.740055 GTGTGTCCAGCTGCTCGG 60.740 66.667 8.66 5.46 0.00 4.63
1800 2175 0.599728 CAGCTGCTCGGATTCCTAGC 60.600 60.000 19.62 19.62 36.77 3.42
1803 2178 1.035923 CTGCTCGGATTCCTAGCTCA 58.964 55.000 24.76 9.27 37.16 4.26
1808 2183 3.244044 GCTCGGATTCCTAGCTCATTTCT 60.244 47.826 19.26 0.00 33.40 2.52
1809 2184 4.555262 CTCGGATTCCTAGCTCATTTCTC 58.445 47.826 0.30 0.00 0.00 2.87
1811 2186 4.279671 TCGGATTCCTAGCTCATTTCTCTC 59.720 45.833 0.30 0.00 0.00 3.20
1812 2187 4.560513 CGGATTCCTAGCTCATTTCTCTCC 60.561 50.000 0.30 0.00 0.00 3.71
1814 2189 4.744795 TTCCTAGCTCATTTCTCTCCAC 57.255 45.455 0.00 0.00 0.00 4.02
1819 2194 2.027377 AGCTCATTTCTCTCCACTGTGG 60.027 50.000 20.86 20.86 39.43 4.17
1843 2258 8.686334 TGGATTTTTGCTATCTGTCCTAAATTC 58.314 33.333 0.00 0.00 0.00 2.17
1849 2264 7.187824 TGCTATCTGTCCTAAATTCTGAACT 57.812 36.000 0.00 0.00 0.00 3.01
2017 2432 5.571784 AATGACTATGACCATGCAACTTG 57.428 39.130 0.00 0.00 0.00 3.16
2020 2435 3.347216 ACTATGACCATGCAACTTGACC 58.653 45.455 0.00 0.00 0.00 4.02
2021 2436 2.592102 ATGACCATGCAACTTGACCT 57.408 45.000 0.00 0.00 0.00 3.85
2033 2448 4.919754 GCAACTTGACCTTTGAAATGCTAG 59.080 41.667 0.00 0.00 0.00 3.42
2037 2452 5.471456 ACTTGACCTTTGAAATGCTAGTCTG 59.529 40.000 0.00 0.00 0.00 3.51
2039 2454 5.809001 TGACCTTTGAAATGCTAGTCTGAT 58.191 37.500 0.00 0.00 0.00 2.90
2104 2519 1.068474 ACGTTATGCGACTTGCTCAC 58.932 50.000 0.00 0.00 46.63 3.51
2107 2522 1.459592 GTTATGCGACTTGCTCACGTT 59.540 47.619 0.00 0.00 46.63 3.99
2157 2573 4.100479 TGCTTGTGCATTGGGAGG 57.900 55.556 0.00 0.00 45.31 4.30
2161 2577 1.341080 CTTGTGCATTGGGAGGGTTT 58.659 50.000 0.00 0.00 0.00 3.27
2167 2583 2.310349 TGCATTGGGAGGGTTTAAGCTA 59.690 45.455 0.00 0.00 0.00 3.32
2170 2586 3.553828 TTGGGAGGGTTTAAGCTATCG 57.446 47.619 0.00 0.00 0.00 2.92
2171 2587 1.140252 TGGGAGGGTTTAAGCTATCGC 59.860 52.381 0.00 8.89 0.00 4.58
2172 2588 1.140252 GGGAGGGTTTAAGCTATCGCA 59.860 52.381 10.22 0.00 39.10 5.10
2173 2589 2.420967 GGGAGGGTTTAAGCTATCGCAA 60.421 50.000 10.22 0.00 39.10 4.85
2174 2590 3.275999 GGAGGGTTTAAGCTATCGCAAA 58.724 45.455 0.00 0.00 39.10 3.68
2175 2591 3.883489 GGAGGGTTTAAGCTATCGCAAAT 59.117 43.478 0.00 0.00 39.10 2.32
2176 2592 4.261197 GGAGGGTTTAAGCTATCGCAAATG 60.261 45.833 0.00 0.00 39.10 2.32
2177 2593 4.523083 AGGGTTTAAGCTATCGCAAATGA 58.477 39.130 0.00 0.00 39.10 2.57
2178 2594 4.947388 AGGGTTTAAGCTATCGCAAATGAA 59.053 37.500 0.00 0.00 39.10 2.57
2179 2595 5.034797 GGGTTTAAGCTATCGCAAATGAAC 58.965 41.667 0.00 0.00 39.10 3.18
2180 2596 5.034797 GGTTTAAGCTATCGCAAATGAACC 58.965 41.667 0.00 0.00 39.10 3.62
2181 2597 5.392595 GGTTTAAGCTATCGCAAATGAACCA 60.393 40.000 9.71 0.00 36.29 3.67
2182 2598 3.764885 AAGCTATCGCAAATGAACCAC 57.235 42.857 0.00 0.00 39.10 4.16
2183 2599 2.991250 AGCTATCGCAAATGAACCACT 58.009 42.857 0.00 0.00 39.10 4.00
2184 2600 2.679837 AGCTATCGCAAATGAACCACTG 59.320 45.455 0.00 0.00 39.10 3.66
2185 2601 2.792542 GCTATCGCAAATGAACCACTGC 60.793 50.000 0.00 0.00 35.78 4.40
2186 2602 1.246649 ATCGCAAATGAACCACTGCA 58.753 45.000 0.00 0.00 34.39 4.41
2187 2603 1.246649 TCGCAAATGAACCACTGCAT 58.753 45.000 0.00 0.00 34.39 3.96
2188 2604 1.199789 TCGCAAATGAACCACTGCATC 59.800 47.619 0.00 0.00 34.39 3.91
2189 2605 1.068402 CGCAAATGAACCACTGCATCA 60.068 47.619 0.00 0.00 34.39 3.07
2190 2606 2.607526 CGCAAATGAACCACTGCATCAA 60.608 45.455 0.00 0.00 34.39 2.57
2191 2607 2.733026 GCAAATGAACCACTGCATCAAC 59.267 45.455 0.00 0.00 34.87 3.18
2192 2608 3.799574 GCAAATGAACCACTGCATCAACA 60.800 43.478 0.00 0.00 34.87 3.33
2193 2609 3.648339 AATGAACCACTGCATCAACAC 57.352 42.857 0.00 0.00 0.00 3.32
2194 2610 0.943673 TGAACCACTGCATCAACACG 59.056 50.000 0.00 0.00 0.00 4.49
2195 2611 0.385974 GAACCACTGCATCAACACGC 60.386 55.000 0.00 0.00 0.00 5.34
2196 2612 1.100463 AACCACTGCATCAACACGCA 61.100 50.000 0.00 0.00 36.52 5.24
2197 2613 1.100463 ACCACTGCATCAACACGCAA 61.100 50.000 0.00 0.00 37.76 4.85
2198 2614 0.030504 CCACTGCATCAACACGCAAA 59.969 50.000 0.00 0.00 37.76 3.68
2208 2624 0.461163 AACACGCAAAGGGCAAAACC 60.461 50.000 0.00 0.00 45.17 3.27
2214 2630 2.490115 CGCAAAGGGCAAAACCTGTATA 59.510 45.455 0.00 0.00 45.17 1.47
2222 2638 7.156694 AGGGCAAAACCTGTATATATTACCA 57.843 36.000 0.00 0.00 40.04 3.25
2265 2681 4.564041 TCTTCAGAGAACTTGATCACTGC 58.436 43.478 0.00 0.00 37.76 4.40
2270 2686 2.810274 GAGAACTTGATCACTGCTGCAA 59.190 45.455 3.02 0.00 0.00 4.08
2312 2728 6.594547 GGAAGACTGTTCCTTTTATGTCCTAC 59.405 42.308 0.00 0.00 35.73 3.18
2313 2729 6.936968 AGACTGTTCCTTTTATGTCCTACT 57.063 37.500 0.00 0.00 0.00 2.57
2314 2730 8.431910 AAGACTGTTCCTTTTATGTCCTACTA 57.568 34.615 0.00 0.00 0.00 1.82
2343 2759 6.630444 AGGATATGTCATGTGCTTTTCATC 57.370 37.500 0.00 0.00 0.00 2.92
2344 2760 6.124340 AGGATATGTCATGTGCTTTTCATCA 58.876 36.000 0.00 0.00 0.00 3.07
2346 2762 6.861572 GGATATGTCATGTGCTTTTCATCATG 59.138 38.462 0.00 0.00 36.46 3.07
2347 2763 3.840468 TGTCATGTGCTTTTCATCATGC 58.160 40.909 0.00 0.00 35.79 4.06
2348 2764 3.508402 TGTCATGTGCTTTTCATCATGCT 59.492 39.130 0.00 0.00 35.79 3.79
2395 2826 2.846685 TAATAATGCGCGCATACACG 57.153 45.000 43.22 0.00 35.31 4.49
2399 2830 0.520412 AATGCGCGCATACACGAAAC 60.520 50.000 43.22 5.96 35.31 2.78
2411 2842 6.149633 GCATACACGAAACAAGAAGGAAATT 58.850 36.000 0.00 0.00 0.00 1.82
2415 2846 7.504924 ACACGAAACAAGAAGGAAATTATGA 57.495 32.000 0.00 0.00 0.00 2.15
2467 2898 4.924305 TCTGCATTGAAAGTTGAAGCTT 57.076 36.364 0.00 0.00 0.00 3.74
2481 2912 5.829924 AGTTGAAGCTTGAAGAAAGATTGGA 59.170 36.000 2.10 0.00 44.42 3.53
2487 2918 2.151202 TGAAGAAAGATTGGACCGTGC 58.849 47.619 0.00 0.00 0.00 5.34
2490 2921 1.073923 AGAAAGATTGGACCGTGCCTT 59.926 47.619 0.00 0.00 0.00 4.35
2540 2971 7.364144 CCCTAAAAGCTTGCCTTAATCTGAATT 60.364 37.037 0.00 0.00 32.20 2.17
2544 2975 5.173664 AGCTTGCCTTAATCTGAATTTTGC 58.826 37.500 0.00 0.00 0.00 3.68
2545 2976 4.931002 GCTTGCCTTAATCTGAATTTTGCA 59.069 37.500 0.00 0.00 0.00 4.08
2561 2993 3.815856 TTGCAGTGCAATTCCTTCAAA 57.184 38.095 26.36 0.00 43.99 2.69
2568 3000 4.646492 AGTGCAATTCCTTCAAAGTTCAGT 59.354 37.500 0.00 0.00 0.00 3.41
2602 3039 6.492007 AAAAGCAATATCATCTAGGCATCG 57.508 37.500 0.00 0.00 0.00 3.84
2622 3059 1.500474 CCCTTATCTGGCTGTCTGGA 58.500 55.000 0.00 0.00 0.00 3.86
2699 3137 3.576982 TGTAACCTCCACTTTGTCTCGAT 59.423 43.478 0.00 0.00 0.00 3.59
2700 3138 3.771577 AACCTCCACTTTGTCTCGATT 57.228 42.857 0.00 0.00 0.00 3.34
2703 3141 4.759782 ACCTCCACTTTGTCTCGATTATG 58.240 43.478 0.00 0.00 0.00 1.90
2756 3194 5.084519 ACATGGGTAAGTGTCTCAGTCTTA 58.915 41.667 0.00 0.00 0.00 2.10
2768 3206 5.129980 TGTCTCAGTCTTAAGCATGGATGAT 59.870 40.000 0.00 0.00 0.00 2.45
2862 3308 3.430895 GCAAGTACAGTAAAAGCTACGCA 59.569 43.478 0.00 0.00 0.00 5.24
2867 3313 5.756833 AGTACAGTAAAAGCTACGCAAAACT 59.243 36.000 0.00 0.00 0.00 2.66
2872 3318 5.756833 AGTAAAAGCTACGCAAAACTGTAGT 59.243 36.000 0.00 0.00 40.13 2.73
2874 3320 5.840940 AAAGCTACGCAAAACTGTAGTAG 57.159 39.130 0.00 0.00 40.13 2.57
2915 3361 7.823745 TTCATCCTTCTAATTTAATGAGGGC 57.176 36.000 0.00 0.00 0.00 5.19
2916 3362 6.910191 TCATCCTTCTAATTTAATGAGGGCA 58.090 36.000 0.00 0.00 0.00 5.36
2917 3363 7.000472 TCATCCTTCTAATTTAATGAGGGCAG 59.000 38.462 0.00 0.00 0.00 4.85
2918 3364 5.694995 TCCTTCTAATTTAATGAGGGCAGG 58.305 41.667 0.00 0.00 0.00 4.85
2919 3365 4.279420 CCTTCTAATTTAATGAGGGCAGGC 59.721 45.833 0.00 0.00 0.00 4.85
2920 3366 3.832527 TCTAATTTAATGAGGGCAGGCC 58.167 45.455 4.33 4.33 0.00 5.19
2921 3367 2.854736 AATTTAATGAGGGCAGGCCT 57.145 45.000 17.36 17.36 36.10 5.19
2922 3368 2.077687 ATTTAATGAGGGCAGGCCTG 57.922 50.000 29.34 29.34 36.10 4.85
2923 3369 0.033208 TTTAATGAGGGCAGGCCTGG 60.033 55.000 33.46 15.81 36.10 4.45
2936 3382 3.052082 CCTGGCGCAGTGGTGAAG 61.052 66.667 10.83 0.00 0.00 3.02
2937 3383 2.281070 CTGGCGCAGTGGTGAAGT 60.281 61.111 10.83 0.00 0.00 3.01
2938 3384 2.280797 TGGCGCAGTGGTGAAGTC 60.281 61.111 10.83 0.00 0.00 3.01
2939 3385 3.050275 GGCGCAGTGGTGAAGTCC 61.050 66.667 10.83 0.00 0.00 3.85
2940 3386 2.031163 GCGCAGTGGTGAAGTCCT 59.969 61.111 0.30 0.00 0.00 3.85
2941 3387 2.029844 GCGCAGTGGTGAAGTCCTC 61.030 63.158 0.30 0.00 0.00 3.71
2942 3388 1.374758 CGCAGTGGTGAAGTCCTCC 60.375 63.158 0.00 0.00 0.00 4.30
2943 3389 1.374758 GCAGTGGTGAAGTCCTCCG 60.375 63.158 0.00 0.00 0.00 4.63
2944 3390 1.374758 CAGTGGTGAAGTCCTCCGC 60.375 63.158 0.00 0.00 38.77 5.54
2945 3391 1.837051 AGTGGTGAAGTCCTCCGCA 60.837 57.895 0.00 0.00 40.43 5.69
2946 3392 1.668151 GTGGTGAAGTCCTCCGCAC 60.668 63.158 0.00 0.00 38.46 5.34
2947 3393 1.837051 TGGTGAAGTCCTCCGCACT 60.837 57.895 0.00 0.00 0.00 4.40
2948 3394 1.371558 GGTGAAGTCCTCCGCACTT 59.628 57.895 0.00 0.00 36.77 3.16
2949 3395 0.951040 GGTGAAGTCCTCCGCACTTG 60.951 60.000 0.00 0.00 34.10 3.16
2950 3396 0.249911 GTGAAGTCCTCCGCACTTGT 60.250 55.000 0.00 0.00 34.10 3.16
2951 3397 0.249868 TGAAGTCCTCCGCACTTGTG 60.250 55.000 0.00 0.00 34.10 3.33
2952 3398 1.569479 GAAGTCCTCCGCACTTGTGC 61.569 60.000 15.01 15.01 34.10 4.57
2953 3399 3.050275 GTCCTCCGCACTTGTGCC 61.050 66.667 18.48 1.48 0.00 5.01
2954 3400 3.555324 TCCTCCGCACTTGTGCCA 61.555 61.111 18.48 6.10 0.00 4.92
2955 3401 2.594303 CCTCCGCACTTGTGCCAA 60.594 61.111 18.48 7.23 0.00 4.52
2956 3402 2.620112 CCTCCGCACTTGTGCCAAG 61.620 63.158 18.48 15.01 0.00 3.61
2957 3403 1.597854 CTCCGCACTTGTGCCAAGA 60.598 57.895 18.48 12.25 0.00 3.02
2958 3404 1.572085 CTCCGCACTTGTGCCAAGAG 61.572 60.000 18.48 16.80 0.00 2.85
2959 3405 2.620112 CCGCACTTGTGCCAAGAGG 61.620 63.158 18.48 10.44 38.23 3.69
2960 3406 1.893808 CGCACTTGTGCCAAGAGGT 60.894 57.895 18.48 0.00 37.19 3.85
2961 3407 1.845809 CGCACTTGTGCCAAGAGGTC 61.846 60.000 18.48 6.32 37.19 3.85
2962 3408 1.518903 GCACTTGTGCCAAGAGGTCC 61.519 60.000 18.22 0.00 37.19 4.46
2963 3409 0.109342 CACTTGTGCCAAGAGGTCCT 59.891 55.000 18.22 0.00 37.19 3.85
2964 3410 0.109342 ACTTGTGCCAAGAGGTCCTG 59.891 55.000 18.22 0.00 37.19 3.86
2965 3411 0.607489 CTTGTGCCAAGAGGTCCTGG 60.607 60.000 0.00 0.00 37.19 4.45
2966 3412 2.067932 TTGTGCCAAGAGGTCCTGGG 62.068 60.000 0.00 0.00 39.14 4.45
2967 3413 2.121963 TGCCAAGAGGTCCTGGGT 60.122 61.111 0.00 0.00 38.32 4.51
2968 3414 1.774217 TGCCAAGAGGTCCTGGGTT 60.774 57.895 0.00 0.00 38.32 4.11
2969 3415 1.002011 GCCAAGAGGTCCTGGGTTC 60.002 63.158 0.00 0.00 38.32 3.62
2970 3416 1.296715 CCAAGAGGTCCTGGGTTCG 59.703 63.158 0.00 0.00 30.82 3.95
2971 3417 1.192146 CCAAGAGGTCCTGGGTTCGA 61.192 60.000 0.00 0.00 30.82 3.71
2972 3418 0.685097 CAAGAGGTCCTGGGTTCGAA 59.315 55.000 0.00 0.00 0.00 3.71
2973 3419 0.685660 AAGAGGTCCTGGGTTCGAAC 59.314 55.000 20.14 20.14 0.00 3.95
2984 3430 3.129792 GTTCGAACCAGCCTCTCTG 57.870 57.895 17.68 0.00 42.49 3.35
2985 3431 1.016653 GTTCGAACCAGCCTCTCTGC 61.017 60.000 17.68 0.00 41.50 4.26
2986 3432 1.471829 TTCGAACCAGCCTCTCTGCA 61.472 55.000 0.00 0.00 41.50 4.41
2987 3433 1.220206 CGAACCAGCCTCTCTGCAT 59.780 57.895 0.00 0.00 41.50 3.96
2988 3434 0.392193 CGAACCAGCCTCTCTGCATT 60.392 55.000 0.00 0.00 41.50 3.56
2989 3435 1.093159 GAACCAGCCTCTCTGCATTG 58.907 55.000 0.00 0.00 41.50 2.82
2990 3436 0.964358 AACCAGCCTCTCTGCATTGC 60.964 55.000 0.46 0.46 41.50 3.56
2991 3437 1.378119 CCAGCCTCTCTGCATTGCA 60.378 57.895 11.50 11.50 41.50 4.08
2992 3438 1.654954 CCAGCCTCTCTGCATTGCAC 61.655 60.000 7.38 0.00 41.50 4.57
2993 3439 0.677098 CAGCCTCTCTGCATTGCACT 60.677 55.000 7.38 0.00 35.78 4.40
2994 3440 0.037877 AGCCTCTCTGCATTGCACTT 59.962 50.000 7.38 0.00 33.79 3.16
2995 3441 0.886563 GCCTCTCTGCATTGCACTTT 59.113 50.000 7.38 0.00 33.79 2.66
2996 3442 1.402456 GCCTCTCTGCATTGCACTTTG 60.402 52.381 7.38 0.00 33.79 2.77
2997 3443 1.402456 CCTCTCTGCATTGCACTTTGC 60.402 52.381 7.38 8.20 45.29 3.68
3007 3453 3.339547 GCACTTTGCAGGGGTAAGA 57.660 52.632 2.16 0.00 44.26 2.10
3008 3454 0.881796 GCACTTTGCAGGGGTAAGAC 59.118 55.000 2.16 0.00 44.26 3.01
3009 3455 1.545651 GCACTTTGCAGGGGTAAGACT 60.546 52.381 2.16 0.00 44.26 3.24
3010 3456 2.290071 GCACTTTGCAGGGGTAAGACTA 60.290 50.000 2.16 0.00 44.26 2.59
3011 3457 3.600388 CACTTTGCAGGGGTAAGACTAG 58.400 50.000 2.16 0.00 0.00 2.57
3012 3458 2.572104 ACTTTGCAGGGGTAAGACTAGG 59.428 50.000 2.16 0.00 0.00 3.02
3013 3459 2.337359 TTGCAGGGGTAAGACTAGGT 57.663 50.000 0.00 0.00 0.00 3.08
3014 3460 2.337359 TGCAGGGGTAAGACTAGGTT 57.663 50.000 0.00 0.00 0.00 3.50
3015 3461 2.185387 TGCAGGGGTAAGACTAGGTTC 58.815 52.381 0.00 0.00 0.00 3.62
3016 3462 1.485480 GCAGGGGTAAGACTAGGTTCC 59.515 57.143 0.00 0.00 0.00 3.62
3017 3463 2.893153 GCAGGGGTAAGACTAGGTTCCT 60.893 54.545 0.00 0.00 0.00 3.36
3018 3464 2.766828 CAGGGGTAAGACTAGGTTCCTG 59.233 54.545 1.12 0.00 35.27 3.86
3019 3465 2.386113 AGGGGTAAGACTAGGTTCCTGT 59.614 50.000 1.12 0.00 0.00 4.00
3020 3466 3.599698 AGGGGTAAGACTAGGTTCCTGTA 59.400 47.826 1.12 0.00 0.00 2.74
3021 3467 4.046360 AGGGGTAAGACTAGGTTCCTGTAA 59.954 45.833 1.12 0.00 0.00 2.41
3022 3468 4.967442 GGGGTAAGACTAGGTTCCTGTAAT 59.033 45.833 1.12 0.00 0.00 1.89
3023 3469 5.070180 GGGGTAAGACTAGGTTCCTGTAATC 59.930 48.000 1.12 0.00 0.00 1.75
3024 3470 5.070180 GGGTAAGACTAGGTTCCTGTAATCC 59.930 48.000 1.12 0.00 0.00 3.01
3025 3471 5.070180 GGTAAGACTAGGTTCCTGTAATCCC 59.930 48.000 1.12 0.00 0.00 3.85
3026 3472 4.628661 AGACTAGGTTCCTGTAATCCCT 57.371 45.455 1.12 0.00 0.00 4.20
3027 3473 4.548669 AGACTAGGTTCCTGTAATCCCTC 58.451 47.826 1.12 0.00 0.00 4.30
3028 3474 3.642377 GACTAGGTTCCTGTAATCCCTCC 59.358 52.174 1.12 0.00 0.00 4.30
3029 3475 1.894699 AGGTTCCTGTAATCCCTCCC 58.105 55.000 0.00 0.00 0.00 4.30
3030 3476 0.844660 GGTTCCTGTAATCCCTCCCC 59.155 60.000 0.00 0.00 0.00 4.81
3031 3477 1.591768 GTTCCTGTAATCCCTCCCCA 58.408 55.000 0.00 0.00 0.00 4.96
3032 3478 1.490910 GTTCCTGTAATCCCTCCCCAG 59.509 57.143 0.00 0.00 0.00 4.45
3033 3479 1.023719 TCCTGTAATCCCTCCCCAGA 58.976 55.000 0.00 0.00 0.00 3.86
3034 3480 1.132500 CCTGTAATCCCTCCCCAGAC 58.868 60.000 0.00 0.00 0.00 3.51
3035 3481 1.132500 CTGTAATCCCTCCCCAGACC 58.868 60.000 0.00 0.00 0.00 3.85
3036 3482 0.327191 TGTAATCCCTCCCCAGACCC 60.327 60.000 0.00 0.00 0.00 4.46
3037 3483 1.060743 GTAATCCCTCCCCAGACCCC 61.061 65.000 0.00 0.00 0.00 4.95
3038 3484 1.542093 TAATCCCTCCCCAGACCCCA 61.542 60.000 0.00 0.00 0.00 4.96
3039 3485 3.660092 ATCCCTCCCCAGACCCCAC 62.660 68.421 0.00 0.00 0.00 4.61
3041 3487 4.354943 CCTCCCCAGACCCCACCT 62.355 72.222 0.00 0.00 0.00 4.00
3042 3488 2.204151 CTCCCCAGACCCCACCTT 60.204 66.667 0.00 0.00 0.00 3.50
3043 3489 2.531685 TCCCCAGACCCCACCTTG 60.532 66.667 0.00 0.00 0.00 3.61
3044 3490 2.858974 CCCCAGACCCCACCTTGT 60.859 66.667 0.00 0.00 0.00 3.16
3045 3491 2.436109 CCCAGACCCCACCTTGTG 59.564 66.667 0.00 0.00 0.00 3.33
3046 3492 2.460853 CCCAGACCCCACCTTGTGT 61.461 63.158 0.00 0.00 0.00 3.72
3047 3493 1.228245 CCAGACCCCACCTTGTGTG 60.228 63.158 0.00 0.00 45.01 3.82
3054 3500 4.907457 CACCTTGTGTGGGAGCTT 57.093 55.556 0.00 0.00 41.52 3.74
3055 3501 2.633860 CACCTTGTGTGGGAGCTTC 58.366 57.895 0.00 0.00 41.52 3.86
3056 3502 0.109342 CACCTTGTGTGGGAGCTTCT 59.891 55.000 0.00 0.00 41.52 2.85
3057 3503 1.347707 CACCTTGTGTGGGAGCTTCTA 59.652 52.381 0.00 0.00 41.52 2.10
3058 3504 2.026822 CACCTTGTGTGGGAGCTTCTAT 60.027 50.000 0.00 0.00 41.52 1.98
3059 3505 2.026822 ACCTTGTGTGGGAGCTTCTATG 60.027 50.000 0.00 0.00 0.00 2.23
3060 3506 2.012673 CTTGTGTGGGAGCTTCTATGC 58.987 52.381 0.00 0.00 0.00 3.14
3061 3507 0.983467 TGTGTGGGAGCTTCTATGCA 59.017 50.000 0.00 0.00 34.99 3.96
3062 3508 1.339055 TGTGTGGGAGCTTCTATGCAC 60.339 52.381 0.00 0.00 34.99 4.57
3063 3509 0.253044 TGTGGGAGCTTCTATGCACC 59.747 55.000 0.00 0.00 41.84 5.01
3064 3510 0.543749 GTGGGAGCTTCTATGCACCT 59.456 55.000 0.00 0.00 42.15 4.00
3065 3511 0.543277 TGGGAGCTTCTATGCACCTG 59.457 55.000 0.00 0.00 42.15 4.00
3066 3512 0.179034 GGGAGCTTCTATGCACCTGG 60.179 60.000 0.00 0.00 42.15 4.45
3067 3513 0.543749 GGAGCTTCTATGCACCTGGT 59.456 55.000 0.00 0.00 39.92 4.00
3068 3514 1.474143 GGAGCTTCTATGCACCTGGTC 60.474 57.143 0.00 0.00 39.92 4.02
3069 3515 1.484240 GAGCTTCTATGCACCTGGTCT 59.516 52.381 0.00 0.00 34.99 3.85
3070 3516 1.209019 AGCTTCTATGCACCTGGTCTG 59.791 52.381 0.00 0.00 34.99 3.51
3071 3517 1.065854 GCTTCTATGCACCTGGTCTGT 60.066 52.381 0.00 0.00 0.00 3.41
3072 3518 2.898705 CTTCTATGCACCTGGTCTGTC 58.101 52.381 0.00 0.00 0.00 3.51
3073 3519 1.195115 TCTATGCACCTGGTCTGTCC 58.805 55.000 0.00 0.00 0.00 4.02
3074 3520 1.198713 CTATGCACCTGGTCTGTCCT 58.801 55.000 0.00 0.00 37.07 3.85
3075 3521 1.556911 CTATGCACCTGGTCTGTCCTT 59.443 52.381 0.00 0.00 37.07 3.36
3076 3522 0.773644 ATGCACCTGGTCTGTCCTTT 59.226 50.000 0.00 0.00 37.07 3.11
3077 3523 0.550914 TGCACCTGGTCTGTCCTTTT 59.449 50.000 0.00 0.00 37.07 2.27
3078 3524 1.771854 TGCACCTGGTCTGTCCTTTTA 59.228 47.619 0.00 0.00 37.07 1.52
3079 3525 2.375174 TGCACCTGGTCTGTCCTTTTAT 59.625 45.455 0.00 0.00 37.07 1.40
3080 3526 3.010420 GCACCTGGTCTGTCCTTTTATC 58.990 50.000 0.00 0.00 37.07 1.75
3081 3527 3.610911 CACCTGGTCTGTCCTTTTATCC 58.389 50.000 0.00 0.00 37.07 2.59
3082 3528 3.264450 CACCTGGTCTGTCCTTTTATCCT 59.736 47.826 0.00 0.00 37.07 3.24
3083 3529 3.916989 ACCTGGTCTGTCCTTTTATCCTT 59.083 43.478 0.00 0.00 37.07 3.36
3084 3530 4.019231 ACCTGGTCTGTCCTTTTATCCTTC 60.019 45.833 0.00 0.00 37.07 3.46
3085 3531 4.226168 CCTGGTCTGTCCTTTTATCCTTCT 59.774 45.833 0.00 0.00 37.07 2.85
3086 3532 5.425539 CCTGGTCTGTCCTTTTATCCTTCTA 59.574 44.000 0.00 0.00 37.07 2.10
3087 3533 6.070194 CCTGGTCTGTCCTTTTATCCTTCTAA 60.070 42.308 0.00 0.00 37.07 2.10
3088 3534 7.366011 CCTGGTCTGTCCTTTTATCCTTCTAAT 60.366 40.741 0.00 0.00 37.07 1.73
3089 3535 7.928873 TGGTCTGTCCTTTTATCCTTCTAATT 58.071 34.615 0.00 0.00 37.07 1.40
3090 3536 8.390921 TGGTCTGTCCTTTTATCCTTCTAATTT 58.609 33.333 0.00 0.00 37.07 1.82
3091 3537 9.901172 GGTCTGTCCTTTTATCCTTCTAATTTA 57.099 33.333 0.00 0.00 0.00 1.40
3121 3567 2.673368 GTCAATACCAGTTCGGCTTCAG 59.327 50.000 0.00 0.00 39.03 3.02
3135 3581 4.760715 TCGGCTTCAGTATATCCTGTAGAC 59.239 45.833 6.18 2.38 35.25 2.59
3166 3613 3.125316 GCTCGTGTTAACTGTGGTGTAA 58.875 45.455 7.22 0.00 0.00 2.41
3173 3620 6.035866 CGTGTTAACTGTGGTGTAAACACTTA 59.964 38.462 12.65 1.34 45.73 2.24
3255 3704 6.293462 GCTCCAGTAGTGTTTAGTTCTTTTGG 60.293 42.308 0.00 0.00 0.00 3.28
3261 3710 9.110502 AGTAGTGTTTAGTTCTTTTGGAAAGAG 57.889 33.333 3.65 0.00 35.51 2.85
3269 3718 7.588497 AGTTCTTTTGGAAAGAGTTTAGCAT 57.412 32.000 3.65 0.00 35.51 3.79
3272 3721 9.914131 GTTCTTTTGGAAAGAGTTTAGCATAAT 57.086 29.630 3.65 0.00 35.51 1.28
3420 3869 8.464404 GTTCAGGTTTCTTACAAAAAGTACCTT 58.536 33.333 9.84 0.00 34.02 3.50
3504 3953 3.159213 TGGGATCAGCATGTTGAAGTT 57.841 42.857 16.60 0.00 37.40 2.66
3569 4019 7.961351 TGTTTCACAATTTGAATATTGGTCCT 58.039 30.769 2.79 0.00 43.99 3.85
3618 4068 9.425893 CAAGTTGCTCATATGTTTATAAGTTCG 57.574 33.333 1.90 0.00 0.00 3.95
3676 4126 6.370994 TCAAACGTGGTTTACTAGTTTGTGAA 59.629 34.615 15.78 0.00 46.65 3.18
3677 4127 6.930667 AACGTGGTTTACTAGTTTGTGAAT 57.069 33.333 0.00 0.00 0.00 2.57
3703 4153 0.957395 ATCTTTGGCTCAGTGCACGG 60.957 55.000 12.01 11.52 45.15 4.94
3727 4177 6.385649 AAAAATCACGACACAAATACCAGT 57.614 33.333 0.00 0.00 0.00 4.00
3840 4290 5.692613 AAATTGGGCATGATGTGTTTTTG 57.307 34.783 0.00 0.00 0.00 2.44
3904 4377 1.506309 GCTGACGTGTGTGGCATGAA 61.506 55.000 0.00 0.00 37.53 2.57
4235 4708 2.092429 AGGAACTCCTCACAAAGTTGCA 60.092 45.455 9.00 0.00 44.77 4.08
4430 5166 3.433343 AGGATCACATGAACAATGGCAA 58.567 40.909 0.00 0.00 40.94 4.52
4448 5184 2.938756 GCAATAGTCAGGCAGCTGAACT 60.939 50.000 20.43 16.06 34.88 3.01
4544 5282 5.368145 TGACAGTTGAAACTACAGAAGCAT 58.632 37.500 0.00 0.00 37.08 3.79
4652 5404 7.671398 AGAAATATCCTCAAATGTTTCACTGGT 59.329 33.333 8.24 0.00 38.49 4.00
4820 5572 7.161404 TGTAAGATTGTACATCTGCTGAACTT 58.839 34.615 0.00 0.00 0.00 2.66
4892 5647 8.317679 AGAGAGGATATTTGTAAGATACATGCC 58.682 37.037 0.00 0.00 38.68 4.40
4893 5648 7.099764 AGAGGATATTTGTAAGATACATGCCG 58.900 38.462 0.00 0.00 38.68 5.69
4894 5649 6.173339 AGGATATTTGTAAGATACATGCCGG 58.827 40.000 0.00 0.00 38.68 6.13
4895 5650 5.938125 GGATATTTGTAAGATACATGCCGGT 59.062 40.000 1.90 0.00 38.68 5.28
4896 5651 6.430000 GGATATTTGTAAGATACATGCCGGTT 59.570 38.462 1.90 0.00 38.68 4.44
4897 5652 5.751243 ATTTGTAAGATACATGCCGGTTC 57.249 39.130 1.90 0.00 38.68 3.62
4898 5653 4.481368 TTGTAAGATACATGCCGGTTCT 57.519 40.909 1.90 0.00 38.68 3.01
4899 5654 3.792401 TGTAAGATACATGCCGGTTCTG 58.208 45.455 1.90 0.36 32.89 3.02
4900 5655 1.668419 AAGATACATGCCGGTTCTGC 58.332 50.000 1.90 0.00 0.00 4.26
4949 5704 6.926272 TGTAACTTTATTTGCATGTGGTTTCC 59.074 34.615 0.00 0.00 0.00 3.13
4952 5707 6.532826 ACTTTATTTGCATGTGGTTTCCATT 58.467 32.000 0.00 0.00 35.28 3.16
4955 5710 8.489990 TTTATTTGCATGTGGTTTCCATTATG 57.510 30.769 0.00 9.83 35.28 1.90
4982 5737 9.807921 TTTTTAAAATTTATATGCCCCCAAACA 57.192 25.926 0.55 0.00 0.00 2.83
5065 5821 4.630940 AGCAGACAATTTTGTGTTGGTTTG 59.369 37.500 0.00 0.00 42.43 2.93
5197 5984 2.419851 GGAGAGTCATGGCTTCAAGAGG 60.420 54.545 0.00 0.00 0.00 3.69
5414 6201 2.819608 GCCAACAGGTCATTAGCTTCAA 59.180 45.455 0.00 0.00 0.00 2.69
5455 6242 2.420687 GCAATCCGGGAGAAATGAGACT 60.421 50.000 0.00 0.00 0.00 3.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 1.600636 TGCTACCAACAGCCACAGC 60.601 57.895 0.00 0.00 41.04 4.40
7 8 0.250467 AGTGCTACCAACAGCCACAG 60.250 55.000 0.00 0.00 41.04 3.66
8 9 0.182537 AAGTGCTACCAACAGCCACA 59.817 50.000 0.00 0.00 41.04 4.17
9 10 0.593128 CAAGTGCTACCAACAGCCAC 59.407 55.000 0.00 0.00 41.04 5.01
10 11 0.182537 ACAAGTGCTACCAACAGCCA 59.817 50.000 0.00 0.00 41.04 4.75
11 12 0.593128 CACAAGTGCTACCAACAGCC 59.407 55.000 0.00 0.00 41.04 4.85
23 24 2.160822 AGACTAGTGCTGCACAAGTG 57.839 50.000 31.90 20.19 36.74 3.16
24 25 3.057174 GTCTAGACTAGTGCTGCACAAGT 60.057 47.826 31.90 15.93 36.74 3.16
25 26 3.057245 TGTCTAGACTAGTGCTGCACAAG 60.057 47.826 31.90 18.38 36.74 3.16
26 27 2.890945 TGTCTAGACTAGTGCTGCACAA 59.109 45.455 31.90 10.77 36.74 3.33
27 28 2.514803 TGTCTAGACTAGTGCTGCACA 58.485 47.619 31.90 17.78 36.74 4.57
28 29 3.129462 TCATGTCTAGACTAGTGCTGCAC 59.871 47.826 24.59 24.59 34.10 4.57
29 30 3.356290 TCATGTCTAGACTAGTGCTGCA 58.644 45.455 23.01 0.00 0.00 4.41
30 31 4.202101 ACATCATGTCTAGACTAGTGCTGC 60.202 45.833 23.01 0.00 0.00 5.25
31 32 5.512753 ACATCATGTCTAGACTAGTGCTG 57.487 43.478 23.01 19.70 0.00 4.41
32 33 6.537453 AAACATCATGTCTAGACTAGTGCT 57.463 37.500 23.01 8.77 0.00 4.40
33 34 8.703604 TTAAAACATCATGTCTAGACTAGTGC 57.296 34.615 23.01 4.94 0.00 4.40
42 43 9.625747 TGCCAATCTATTAAAACATCATGTCTA 57.374 29.630 0.00 0.00 0.00 2.59
43 44 8.523915 TGCCAATCTATTAAAACATCATGTCT 57.476 30.769 0.00 0.00 0.00 3.41
44 45 9.585099 TTTGCCAATCTATTAAAACATCATGTC 57.415 29.630 0.00 0.00 0.00 3.06
45 46 9.369904 GTTTGCCAATCTATTAAAACATCATGT 57.630 29.630 0.00 0.00 0.00 3.21
46 47 9.368674 TGTTTGCCAATCTATTAAAACATCATG 57.631 29.630 0.00 0.00 33.80 3.07
47 48 9.369904 GTGTTTGCCAATCTATTAAAACATCAT 57.630 29.630 0.00 0.00 39.07 2.45
48 49 8.363390 TGTGTTTGCCAATCTATTAAAACATCA 58.637 29.630 0.00 0.00 39.07 3.07
49 50 8.755696 TGTGTTTGCCAATCTATTAAAACATC 57.244 30.769 0.00 0.00 39.07 3.06
60 61 9.461312 TTTTAGTCTATATGTGTTTGCCAATCT 57.539 29.630 0.00 0.00 0.00 2.40
61 62 9.503427 GTTTTAGTCTATATGTGTTTGCCAATC 57.497 33.333 0.00 0.00 0.00 2.67
62 63 8.181573 CGTTTTAGTCTATATGTGTTTGCCAAT 58.818 33.333 0.00 0.00 0.00 3.16
63 64 7.173562 ACGTTTTAGTCTATATGTGTTTGCCAA 59.826 33.333 0.00 0.00 0.00 4.52
64 65 6.651643 ACGTTTTAGTCTATATGTGTTTGCCA 59.348 34.615 0.00 0.00 0.00 4.92
65 66 7.068692 ACGTTTTAGTCTATATGTGTTTGCC 57.931 36.000 0.00 0.00 0.00 4.52
66 67 9.845305 GATACGTTTTAGTCTATATGTGTTTGC 57.155 33.333 0.00 0.00 0.00 3.68
77 78 9.754382 AGTTTTCACTTGATACGTTTTAGTCTA 57.246 29.630 0.00 0.00 0.00 2.59
78 79 8.658499 AGTTTTCACTTGATACGTTTTAGTCT 57.342 30.769 0.00 0.00 0.00 3.24
112 113 6.159293 GGGATCAAAGTTTCCAGATTTTCAC 58.841 40.000 0.00 0.00 33.43 3.18
130 131 1.618143 ATCCAACGGGGTGGGATCA 60.618 57.895 2.35 0.00 42.24 2.92
136 137 0.462047 GCTACAGATCCAACGGGGTG 60.462 60.000 0.00 0.00 38.11 4.61
139 140 1.737793 GTTTGCTACAGATCCAACGGG 59.262 52.381 0.00 0.00 0.00 5.28
150 151 2.455674 AGCAGATGTCGTTTGCTACA 57.544 45.000 8.28 0.00 45.67 2.74
175 176 1.073722 TTGCTGGTGGGAGCTCTTG 59.926 57.895 14.64 0.00 39.90 3.02
176 177 1.073897 GTTGCTGGTGGGAGCTCTT 59.926 57.895 14.64 0.00 39.90 2.85
177 178 1.422161 AAGTTGCTGGTGGGAGCTCT 61.422 55.000 14.64 0.00 39.90 4.09
178 179 0.324943 TAAGTTGCTGGTGGGAGCTC 59.675 55.000 4.71 4.71 39.90 4.09
193 194 8.466798 AGACTTTGTGCTAATTTGTGTTTAAGT 58.533 29.630 0.00 0.00 0.00 2.24
203 204 6.128138 AGTAGGGAGACTTTGTGCTAATTT 57.872 37.500 0.00 0.00 0.00 1.82
204 205 5.763876 AGTAGGGAGACTTTGTGCTAATT 57.236 39.130 0.00 0.00 0.00 1.40
216 217 6.380560 ACAACATTACTAGGAAGTAGGGAGAC 59.619 42.308 0.00 0.00 39.36 3.36
217 218 6.500336 ACAACATTACTAGGAAGTAGGGAGA 58.500 40.000 0.00 0.00 39.36 3.71
219 220 6.258354 TGACAACATTACTAGGAAGTAGGGA 58.742 40.000 0.00 0.00 39.36 4.20
224 225 6.435292 AACCTGACAACATTACTAGGAAGT 57.565 37.500 0.00 0.00 39.91 3.01
225 226 7.745620 AAAACCTGACAACATTACTAGGAAG 57.254 36.000 0.00 0.00 0.00 3.46
247 248 5.837829 AGGGGATAAGCCAATACTCAAAAA 58.162 37.500 0.00 0.00 38.95 1.94
248 249 5.445964 GAGGGGATAAGCCAATACTCAAAA 58.554 41.667 0.00 0.00 38.95 2.44
249 250 4.141251 GGAGGGGATAAGCCAATACTCAAA 60.141 45.833 0.00 0.00 38.95 2.69
250 251 3.394606 GGAGGGGATAAGCCAATACTCAA 59.605 47.826 0.00 0.00 38.95 3.02
251 252 2.979678 GGAGGGGATAAGCCAATACTCA 59.020 50.000 0.00 0.00 38.95 3.41
252 253 2.306219 GGGAGGGGATAAGCCAATACTC 59.694 54.545 0.00 0.00 38.95 2.59
253 254 2.349445 GGGAGGGGATAAGCCAATACT 58.651 52.381 0.00 0.00 38.95 2.12
254 255 1.003233 CGGGAGGGGATAAGCCAATAC 59.997 57.143 0.00 0.00 38.95 1.89
255 256 1.358152 CGGGAGGGGATAAGCCAATA 58.642 55.000 0.00 0.00 38.95 1.90
256 257 0.697854 ACGGGAGGGGATAAGCCAAT 60.698 55.000 0.00 0.00 38.95 3.16
257 258 0.917333 AACGGGAGGGGATAAGCCAA 60.917 55.000 0.00 0.00 38.95 4.52
258 259 1.307517 AACGGGAGGGGATAAGCCA 60.308 57.895 0.00 0.00 38.95 4.75
259 260 1.450642 GAACGGGAGGGGATAAGCC 59.549 63.158 0.00 0.00 0.00 4.35
285 286 0.739462 CACCGTGGCTATTTCGCTGA 60.739 55.000 0.00 0.00 0.00 4.26
303 304 0.250124 ACATGAAAACCTCGGCGTCA 60.250 50.000 6.85 1.83 0.00 4.35
305 306 2.172851 TTACATGAAAACCTCGGCGT 57.827 45.000 6.85 0.00 0.00 5.68
308 309 4.173256 GCCAATTTACATGAAAACCTCGG 58.827 43.478 0.00 0.00 0.00 4.63
311 312 7.280652 GCATTATGCCAATTTACATGAAAACCT 59.719 33.333 5.80 0.00 37.42 3.50
312 313 7.408910 GCATTATGCCAATTTACATGAAAACC 58.591 34.615 5.80 0.00 37.42 3.27
330 331 3.243068 GGCAACGGAACTAAGGCATTATG 60.243 47.826 0.00 0.00 0.00 1.90
331 332 2.949644 GGCAACGGAACTAAGGCATTAT 59.050 45.455 0.00 0.00 0.00 1.28
332 333 2.361789 GGCAACGGAACTAAGGCATTA 58.638 47.619 0.00 0.00 0.00 1.90
333 334 1.173913 GGCAACGGAACTAAGGCATT 58.826 50.000 0.00 0.00 0.00 3.56
334 335 2.868253 GGCAACGGAACTAAGGCAT 58.132 52.632 0.00 0.00 0.00 4.40
348 349 0.109827 CAATCGCACAACATCGGCAA 60.110 50.000 0.00 0.00 0.00 4.52
349 350 1.501292 CAATCGCACAACATCGGCA 59.499 52.632 0.00 0.00 0.00 5.69
350 351 1.226379 CCAATCGCACAACATCGGC 60.226 57.895 0.00 0.00 0.00 5.54
352 353 0.179192 CCACCAATCGCACAACATCG 60.179 55.000 0.00 0.00 0.00 3.84
353 354 0.171007 CCCACCAATCGCACAACATC 59.829 55.000 0.00 0.00 0.00 3.06
355 356 1.152860 ACCCACCAATCGCACAACA 60.153 52.632 0.00 0.00 0.00 3.33
356 357 1.579429 GACCCACCAATCGCACAAC 59.421 57.895 0.00 0.00 0.00 3.32
357 358 1.963855 CGACCCACCAATCGCACAA 60.964 57.895 0.00 0.00 0.00 3.33
358 359 1.817911 TACGACCCACCAATCGCACA 61.818 55.000 0.00 0.00 42.12 4.57
360 361 0.179094 GATACGACCCACCAATCGCA 60.179 55.000 0.00 0.00 42.12 5.10
363 364 3.261981 ACAAGATACGACCCACCAATC 57.738 47.619 0.00 0.00 0.00 2.67
364 365 4.163458 ACATACAAGATACGACCCACCAAT 59.837 41.667 0.00 0.00 0.00 3.16
365 366 3.516300 ACATACAAGATACGACCCACCAA 59.484 43.478 0.00 0.00 0.00 3.67
366 367 3.101437 ACATACAAGATACGACCCACCA 58.899 45.455 0.00 0.00 0.00 4.17
367 368 3.118884 ACACATACAAGATACGACCCACC 60.119 47.826 0.00 0.00 0.00 4.61
368 369 4.119442 ACACATACAAGATACGACCCAC 57.881 45.455 0.00 0.00 0.00 4.61
369 370 5.361571 ACATACACATACAAGATACGACCCA 59.638 40.000 0.00 0.00 0.00 4.51
370 371 5.839621 ACATACACATACAAGATACGACCC 58.160 41.667 0.00 0.00 0.00 4.46
375 736 7.091443 GCTCCCTACATACACATACAAGATAC 58.909 42.308 0.00 0.00 0.00 2.24
380 741 3.389983 GGGCTCCCTACATACACATACAA 59.610 47.826 0.00 0.00 0.00 2.41
391 752 2.363795 CTGGACGGGCTCCCTACA 60.364 66.667 3.11 0.00 38.49 2.74
415 776 5.766702 ATTTACATGAAAATTGCAGCACG 57.233 34.783 0.00 0.00 0.00 5.34
416 777 7.095523 ACAGAATTTACATGAAAATTGCAGCAC 60.096 33.333 0.00 0.00 38.77 4.40
419 780 8.752766 AGACAGAATTTACATGAAAATTGCAG 57.247 30.769 0.00 0.00 38.77 4.41
453 814 8.247562 ACAACTTCACACTCTAGAATCAGATAC 58.752 37.037 0.00 0.00 0.00 2.24
454 815 8.354711 ACAACTTCACACTCTAGAATCAGATA 57.645 34.615 0.00 0.00 0.00 1.98
455 816 7.238486 ACAACTTCACACTCTAGAATCAGAT 57.762 36.000 0.00 0.00 0.00 2.90
456 817 6.656632 ACAACTTCACACTCTAGAATCAGA 57.343 37.500 0.00 0.00 0.00 3.27
457 818 6.529829 GCTACAACTTCACACTCTAGAATCAG 59.470 42.308 0.00 0.00 0.00 2.90
459 820 5.808030 GGCTACAACTTCACACTCTAGAATC 59.192 44.000 0.00 0.00 0.00 2.52
460 821 5.337652 GGGCTACAACTTCACACTCTAGAAT 60.338 44.000 0.00 0.00 0.00 2.40
461 822 4.021368 GGGCTACAACTTCACACTCTAGAA 60.021 45.833 0.00 0.00 0.00 2.10
462 823 3.510360 GGGCTACAACTTCACACTCTAGA 59.490 47.826 0.00 0.00 0.00 2.43
463 824 3.368531 GGGGCTACAACTTCACACTCTAG 60.369 52.174 0.00 0.00 0.00 2.43
464 825 2.565834 GGGGCTACAACTTCACACTCTA 59.434 50.000 0.00 0.00 0.00 2.43
465 826 1.348036 GGGGCTACAACTTCACACTCT 59.652 52.381 0.00 0.00 0.00 3.24
466 827 1.348036 AGGGGCTACAACTTCACACTC 59.652 52.381 0.00 0.00 0.00 3.51
483 844 6.485830 TCTGTACATCAAGAATTAGGAGGG 57.514 41.667 0.00 0.00 0.00 4.30
504 865 7.449247 AGCTACAAAGTCAGAGAGAAAATTCT 58.551 34.615 0.00 0.00 41.00 2.40
550 911 9.778993 CTTGAGTGGTAATACATCAAAATTCAG 57.221 33.333 6.46 0.00 30.10 3.02
556 917 9.513906 TTGAATCTTGAGTGGTAATACATCAAA 57.486 29.630 6.46 1.12 30.10 2.69
600 961 7.124901 AGACACTCCATCAGTAGTCATACAAAT 59.875 37.037 0.00 0.00 36.43 2.32
604 965 6.127591 ACAAGACACTCCATCAGTAGTCATAC 60.128 42.308 0.00 0.00 36.43 2.39
613 974 7.295952 GTGTATAAACAAGACACTCCATCAG 57.704 40.000 0.00 0.00 45.07 2.90
632 993 9.631257 TGTTTCCATCATTATTCAGATGTGTAT 57.369 29.630 0.00 0.00 39.92 2.29
637 998 7.337480 TGGTGTTTCCATCATTATTCAGATG 57.663 36.000 0.00 0.00 41.93 2.90
685 1046 4.783450 GCAGAAATTGATACCGCGAAGAAG 60.783 45.833 8.23 0.00 0.00 2.85
727 1088 3.045601 TGCAGCCTCTTTACTGAACTC 57.954 47.619 0.00 0.00 35.90 3.01
729 1090 4.479619 CAATTGCAGCCTCTTTACTGAAC 58.520 43.478 0.00 0.00 35.90 3.18
733 1094 3.084786 GTCCAATTGCAGCCTCTTTACT 58.915 45.455 0.00 0.00 0.00 2.24
775 1136 1.570501 ACCCTCTGAGCTCATCTCTCT 59.429 52.381 18.63 0.00 42.38 3.10
776 1137 1.682854 CACCCTCTGAGCTCATCTCTC 59.317 57.143 18.63 0.00 42.38 3.20
837 1208 4.033776 CGCTTGGGCCAGGAAGGA 62.034 66.667 21.24 0.00 41.22 3.36
994 1365 2.125310 CGGCGCCACCATTCTGTA 60.125 61.111 28.98 0.00 39.03 2.74
1343 1714 1.098712 CGGAAGAGGGAGACGAGGAG 61.099 65.000 0.00 0.00 0.00 3.69
1344 1715 1.077644 CGGAAGAGGGAGACGAGGA 60.078 63.158 0.00 0.00 0.00 3.71
1345 1716 1.378778 ACGGAAGAGGGAGACGAGG 60.379 63.158 0.00 0.00 0.00 4.63
1346 1717 1.658686 CCACGGAAGAGGGAGACGAG 61.659 65.000 0.00 0.00 38.28 4.18
1347 1718 1.677966 CCACGGAAGAGGGAGACGA 60.678 63.158 0.00 0.00 38.28 4.20
1348 1719 2.885861 CCACGGAAGAGGGAGACG 59.114 66.667 0.00 0.00 38.28 4.18
1602 1975 2.268076 GCACCGCAAACCAGACCAT 61.268 57.895 0.00 0.00 0.00 3.55
1612 1985 1.971167 GAACCCATGAGCACCGCAA 60.971 57.895 0.00 0.00 0.00 4.85
1627 2000 2.125512 AGGCAGCGTCCATCGAAC 60.126 61.111 0.00 0.00 42.86 3.95
1765 2138 0.246635 GCTGGACACACACGGACTAT 59.753 55.000 0.00 0.00 0.00 2.12
1768 2141 1.956170 CAGCTGGACACACACGGAC 60.956 63.158 5.57 0.00 0.00 4.79
1780 2153 0.033228 CTAGGAATCCGAGCAGCTGG 59.967 60.000 17.12 0.00 0.00 4.85
1781 2154 3.584586 CTAGGAATCCGAGCAGCTG 57.415 57.895 10.11 10.11 0.00 4.24
1791 2166 5.070313 AGTGGAGAGAAATGAGCTAGGAATC 59.930 44.000 0.00 0.00 0.00 2.52
1800 2175 3.969287 TCCACAGTGGAGAGAAATGAG 57.031 47.619 19.21 0.00 42.67 2.90
1811 2186 4.460382 ACAGATAGCAAAAATCCACAGTGG 59.540 41.667 14.19 14.19 39.43 4.00
1812 2187 5.392380 GGACAGATAGCAAAAATCCACAGTG 60.392 44.000 0.00 0.00 0.00 3.66
1814 2189 4.946157 AGGACAGATAGCAAAAATCCACAG 59.054 41.667 0.00 0.00 0.00 3.66
1819 2194 9.727627 CAGAATTTAGGACAGATAGCAAAAATC 57.272 33.333 0.00 0.00 0.00 2.17
1843 2258 2.288030 CCAGGCTCTGCAAAAAGTTCAG 60.288 50.000 0.00 0.00 0.00 3.02
1849 2264 2.170166 CATACCCAGGCTCTGCAAAAA 58.830 47.619 0.00 0.00 0.00 1.94
2017 2432 6.372659 TCAATCAGACTAGCATTTCAAAGGTC 59.627 38.462 0.00 0.00 0.00 3.85
2020 2435 8.295288 AGTTTCAATCAGACTAGCATTTCAAAG 58.705 33.333 0.00 0.00 0.00 2.77
2021 2436 8.077991 CAGTTTCAATCAGACTAGCATTTCAAA 58.922 33.333 0.00 0.00 0.00 2.69
2033 2448 2.161211 GCAGCTCCAGTTTCAATCAGAC 59.839 50.000 0.00 0.00 0.00 3.51
2037 2452 2.555757 AGTTGCAGCTCCAGTTTCAATC 59.444 45.455 0.00 0.00 0.00 2.67
2039 2454 2.057137 AGTTGCAGCTCCAGTTTCAA 57.943 45.000 0.00 0.00 0.00 2.69
2094 2509 0.582005 GACCACAACGTGAGCAAGTC 59.418 55.000 0.00 0.00 35.23 3.01
2104 2519 1.577468 TTACACAGCTGACCACAACG 58.423 50.000 23.35 0.44 0.00 4.10
2107 2522 5.767665 ACAAATAATTACACAGCTGACCACA 59.232 36.000 23.35 0.00 0.00 4.17
2167 2583 1.246649 TGCAGTGGTTCATTTGCGAT 58.753 45.000 0.00 0.00 39.34 4.58
2170 2586 2.728690 TGATGCAGTGGTTCATTTGC 57.271 45.000 0.00 0.00 37.09 3.68
2171 2587 3.737266 GTGTTGATGCAGTGGTTCATTTG 59.263 43.478 0.00 0.00 0.00 2.32
2172 2588 3.550639 CGTGTTGATGCAGTGGTTCATTT 60.551 43.478 0.00 0.00 0.00 2.32
2173 2589 2.030893 CGTGTTGATGCAGTGGTTCATT 60.031 45.455 0.00 0.00 0.00 2.57
2174 2590 1.536766 CGTGTTGATGCAGTGGTTCAT 59.463 47.619 0.00 0.00 0.00 2.57
2175 2591 0.943673 CGTGTTGATGCAGTGGTTCA 59.056 50.000 0.00 0.00 0.00 3.18
2176 2592 0.385974 GCGTGTTGATGCAGTGGTTC 60.386 55.000 0.00 0.00 33.89 3.62
2177 2593 1.100463 TGCGTGTTGATGCAGTGGTT 61.100 50.000 0.00 0.00 39.28 3.67
2178 2594 1.100463 TTGCGTGTTGATGCAGTGGT 61.100 50.000 0.00 0.00 44.96 4.16
2179 2595 0.030504 TTTGCGTGTTGATGCAGTGG 59.969 50.000 0.00 0.00 44.96 4.00
2180 2596 1.401530 CTTTGCGTGTTGATGCAGTG 58.598 50.000 0.00 0.00 44.96 3.66
2181 2597 0.311790 CCTTTGCGTGTTGATGCAGT 59.688 50.000 0.00 0.00 44.96 4.40
2182 2598 0.387622 CCCTTTGCGTGTTGATGCAG 60.388 55.000 0.00 0.00 44.96 4.41
2183 2599 1.659233 CCCTTTGCGTGTTGATGCA 59.341 52.632 0.00 0.00 42.59 3.96
2184 2600 1.734117 GCCCTTTGCGTGTTGATGC 60.734 57.895 0.00 0.00 34.35 3.91
2185 2601 0.031857 TTGCCCTTTGCGTGTTGATG 59.968 50.000 0.00 0.00 45.60 3.07
2186 2602 0.749649 TTTGCCCTTTGCGTGTTGAT 59.250 45.000 0.00 0.00 45.60 2.57
2187 2603 0.532573 TTTTGCCCTTTGCGTGTTGA 59.467 45.000 0.00 0.00 45.60 3.18
2188 2604 0.649993 GTTTTGCCCTTTGCGTGTTG 59.350 50.000 0.00 0.00 45.60 3.33
2189 2605 0.461163 GGTTTTGCCCTTTGCGTGTT 60.461 50.000 0.00 0.00 45.60 3.32
2190 2606 1.142965 GGTTTTGCCCTTTGCGTGT 59.857 52.632 0.00 0.00 45.60 4.49
2191 2607 0.875474 CAGGTTTTGCCCTTTGCGTG 60.875 55.000 0.00 0.00 45.60 5.34
2192 2608 1.326951 ACAGGTTTTGCCCTTTGCGT 61.327 50.000 0.00 0.00 45.60 5.24
2193 2609 0.671251 TACAGGTTTTGCCCTTTGCG 59.329 50.000 0.00 0.00 45.60 4.85
2194 2610 4.736126 ATATACAGGTTTTGCCCTTTGC 57.264 40.909 0.00 0.00 38.26 3.68
2195 2611 8.357402 GGTAATATATACAGGTTTTGCCCTTTG 58.643 37.037 0.00 0.00 38.26 2.77
2196 2612 8.062536 TGGTAATATATACAGGTTTTGCCCTTT 58.937 33.333 0.00 0.00 38.26 3.11
2197 2613 7.504574 GTGGTAATATATACAGGTTTTGCCCTT 59.495 37.037 0.00 0.00 38.26 3.95
2198 2614 7.002276 GTGGTAATATATACAGGTTTTGCCCT 58.998 38.462 0.00 0.00 38.26 5.19
2214 2630 8.455903 CACAAGATCAGGATTTGTGGTAATAT 57.544 34.615 14.06 0.00 44.80 1.28
2222 2638 5.874093 AGAGTTCACAAGATCAGGATTTGT 58.126 37.500 0.00 0.00 35.56 2.83
2265 2681 4.501559 CCAATGCTAACATCGAATTTGCAG 59.498 41.667 20.34 11.80 40.29 4.41
2270 2686 5.882557 AGTCTTCCAATGCTAACATCGAATT 59.117 36.000 0.00 0.00 34.62 2.17
2312 2728 7.180322 AGCACATGACATATCCTTATCCTAG 57.820 40.000 0.00 0.00 0.00 3.02
2313 2729 7.559335 AAGCACATGACATATCCTTATCCTA 57.441 36.000 0.00 0.00 0.00 2.94
2314 2730 6.445451 AAGCACATGACATATCCTTATCCT 57.555 37.500 0.00 0.00 0.00 3.24
2330 2746 7.324935 TGATTAAAGCATGATGAAAAGCACAT 58.675 30.769 0.00 0.00 0.00 3.21
2346 2762 9.646427 CCTTATCCTAGTAGACATGATTAAAGC 57.354 37.037 0.00 0.00 0.00 3.51
2348 2764 9.670442 ACCCTTATCCTAGTAGACATGATTAAA 57.330 33.333 0.00 0.00 0.00 1.52
2421 2852 0.896940 CACCCCAGCAGCAACTTGAT 60.897 55.000 0.00 0.00 0.00 2.57
2426 2857 0.681175 AAATTCACCCCAGCAGCAAC 59.319 50.000 0.00 0.00 0.00 4.17
2467 2898 2.151202 GCACGGTCCAATCTTTCTTCA 58.849 47.619 0.00 0.00 0.00 3.02
2481 2912 5.425196 TTTTAGGTATCTTAAGGCACGGT 57.575 39.130 1.85 0.00 0.00 4.83
2487 2918 7.681939 TGCACACTTTTTAGGTATCTTAAGG 57.318 36.000 1.85 0.00 0.00 2.69
2490 2921 7.771826 GGGTATGCACACTTTTTAGGTATCTTA 59.228 37.037 0.00 0.00 0.00 2.10
2544 2975 4.935702 TGAACTTTGAAGGAATTGCACTG 58.064 39.130 0.00 0.00 0.00 3.66
2545 2976 4.646492 ACTGAACTTTGAAGGAATTGCACT 59.354 37.500 0.00 0.00 0.00 4.40
2639 3076 5.644644 CAGGAGAAAAATACTTGGCATGAC 58.355 41.667 7.45 0.00 0.00 3.06
2640 3077 4.158394 GCAGGAGAAAAATACTTGGCATGA 59.842 41.667 7.45 0.00 0.00 3.07
2641 3078 4.159135 AGCAGGAGAAAAATACTTGGCATG 59.841 41.667 0.00 0.00 0.00 4.06
2703 3141 9.943163 AACAAAACATAACCAAAATGTAATTGC 57.057 25.926 11.47 0.00 37.57 3.56
2756 3194 3.562182 TCAGCAATGATCATCCATGCTT 58.438 40.909 24.32 11.73 32.60 3.91
2896 3342 4.279420 GCCTGCCCTCATTAAATTAGAAGG 59.721 45.833 0.00 0.00 0.00 3.46
2899 3345 3.463329 AGGCCTGCCCTCATTAAATTAGA 59.537 43.478 3.11 0.00 41.21 2.10
2900 3346 3.571401 CAGGCCTGCCCTCATTAAATTAG 59.429 47.826 22.33 0.00 44.09 1.73
2904 3350 0.033208 CCAGGCCTGCCCTCATTAAA 60.033 55.000 28.39 0.00 44.09 1.52
2919 3365 3.052082 CTTCACCACTGCGCCAGG 61.052 66.667 4.18 6.64 35.51 4.45
2920 3366 2.281070 ACTTCACCACTGCGCCAG 60.281 61.111 4.18 4.99 37.52 4.85
2921 3367 2.280797 GACTTCACCACTGCGCCA 60.281 61.111 4.18 0.00 0.00 5.69
2922 3368 3.050275 GGACTTCACCACTGCGCC 61.050 66.667 4.18 0.00 0.00 6.53
2923 3369 2.029844 GAGGACTTCACCACTGCGC 61.030 63.158 0.00 0.00 0.00 6.09
2924 3370 1.374758 GGAGGACTTCACCACTGCG 60.375 63.158 0.00 0.00 0.00 5.18
2925 3371 1.374758 CGGAGGACTTCACCACTGC 60.375 63.158 0.00 0.00 0.00 4.40
2926 3372 1.374758 GCGGAGGACTTCACCACTG 60.375 63.158 0.00 0.00 0.00 3.66
2927 3373 1.837051 TGCGGAGGACTTCACCACT 60.837 57.895 0.00 0.00 0.00 4.00
2928 3374 2.741092 TGCGGAGGACTTCACCAC 59.259 61.111 0.00 0.00 0.00 4.16
2948 3394 2.528818 CCCAGGACCTCTTGGCACA 61.529 63.158 0.00 0.00 41.31 4.57
2949 3395 2.069165 AACCCAGGACCTCTTGGCAC 62.069 60.000 0.00 0.00 41.31 5.01
2950 3396 1.774217 AACCCAGGACCTCTTGGCA 60.774 57.895 0.00 0.00 41.31 4.92
2951 3397 1.002011 GAACCCAGGACCTCTTGGC 60.002 63.158 0.00 0.00 41.31 4.52
2952 3398 1.192146 TCGAACCCAGGACCTCTTGG 61.192 60.000 0.00 0.00 42.20 3.61
2953 3399 0.685097 TTCGAACCCAGGACCTCTTG 59.315 55.000 0.00 0.00 0.00 3.02
2954 3400 0.685660 GTTCGAACCCAGGACCTCTT 59.314 55.000 17.68 0.00 0.00 2.85
2955 3401 1.192803 GGTTCGAACCCAGGACCTCT 61.193 60.000 33.02 0.00 43.43 3.69
2956 3402 1.295746 GGTTCGAACCCAGGACCTC 59.704 63.158 33.02 7.79 43.43 3.85
2957 3403 3.479979 GGTTCGAACCCAGGACCT 58.520 61.111 33.02 0.00 43.43 3.85
2966 3412 1.016653 GCAGAGAGGCTGGTTCGAAC 61.017 60.000 20.14 20.14 45.03 3.95
2967 3413 1.293498 GCAGAGAGGCTGGTTCGAA 59.707 57.895 0.00 0.00 45.03 3.71
2968 3414 1.260538 ATGCAGAGAGGCTGGTTCGA 61.261 55.000 0.00 0.00 45.03 3.71
2969 3415 0.392193 AATGCAGAGAGGCTGGTTCG 60.392 55.000 0.00 0.00 45.03 3.95
2970 3416 1.093159 CAATGCAGAGAGGCTGGTTC 58.907 55.000 0.00 0.00 45.03 3.62
2971 3417 0.964358 GCAATGCAGAGAGGCTGGTT 60.964 55.000 0.00 0.00 45.03 3.67
2972 3418 1.378250 GCAATGCAGAGAGGCTGGT 60.378 57.895 0.00 0.00 45.03 4.00
2973 3419 1.378119 TGCAATGCAGAGAGGCTGG 60.378 57.895 2.72 0.00 45.03 4.85
2975 3421 0.037877 AAGTGCAATGCAGAGAGGCT 59.962 50.000 8.73 0.00 40.08 4.58
2976 3422 0.886563 AAAGTGCAATGCAGAGAGGC 59.113 50.000 8.73 0.00 40.08 4.70
2977 3423 1.402456 GCAAAGTGCAATGCAGAGAGG 60.402 52.381 8.73 0.00 44.26 3.69
2978 3424 1.978542 GCAAAGTGCAATGCAGAGAG 58.021 50.000 8.73 0.33 44.26 3.20
2989 3435 0.881796 GTCTTACCCCTGCAAAGTGC 59.118 55.000 0.00 0.00 45.29 4.40
2990 3436 2.568623 AGTCTTACCCCTGCAAAGTG 57.431 50.000 0.00 0.00 0.00 3.16
2991 3437 2.572104 CCTAGTCTTACCCCTGCAAAGT 59.428 50.000 0.00 0.00 0.00 2.66
2992 3438 2.572104 ACCTAGTCTTACCCCTGCAAAG 59.428 50.000 0.00 0.00 0.00 2.77
2993 3439 2.627933 ACCTAGTCTTACCCCTGCAAA 58.372 47.619 0.00 0.00 0.00 3.68
2994 3440 2.337359 ACCTAGTCTTACCCCTGCAA 57.663 50.000 0.00 0.00 0.00 4.08
2995 3441 2.185387 GAACCTAGTCTTACCCCTGCA 58.815 52.381 0.00 0.00 0.00 4.41
2996 3442 1.485480 GGAACCTAGTCTTACCCCTGC 59.515 57.143 0.00 0.00 0.00 4.85
2997 3443 2.766828 CAGGAACCTAGTCTTACCCCTG 59.233 54.545 0.00 0.00 34.72 4.45
2998 3444 2.386113 ACAGGAACCTAGTCTTACCCCT 59.614 50.000 0.00 0.00 0.00 4.79
2999 3445 2.830293 ACAGGAACCTAGTCTTACCCC 58.170 52.381 0.00 0.00 0.00 4.95
3000 3446 5.070180 GGATTACAGGAACCTAGTCTTACCC 59.930 48.000 0.00 0.00 0.00 3.69
3001 3447 5.070180 GGGATTACAGGAACCTAGTCTTACC 59.930 48.000 0.00 0.00 0.00 2.85
3002 3448 5.898397 AGGGATTACAGGAACCTAGTCTTAC 59.102 44.000 0.00 0.00 0.00 2.34
3003 3449 6.101274 AGGGATTACAGGAACCTAGTCTTA 57.899 41.667 0.00 0.00 0.00 2.10
3004 3450 4.961585 AGGGATTACAGGAACCTAGTCTT 58.038 43.478 0.00 0.00 0.00 3.01
3005 3451 4.548669 GAGGGATTACAGGAACCTAGTCT 58.451 47.826 0.00 0.00 0.00 3.24
3006 3452 3.642377 GGAGGGATTACAGGAACCTAGTC 59.358 52.174 0.00 0.00 0.00 2.59
3007 3453 3.632906 GGGAGGGATTACAGGAACCTAGT 60.633 52.174 0.00 0.00 0.00 2.57
3008 3454 2.973406 GGGAGGGATTACAGGAACCTAG 59.027 54.545 0.00 0.00 0.00 3.02
3009 3455 2.361070 GGGGAGGGATTACAGGAACCTA 60.361 54.545 0.00 0.00 0.00 3.08
3010 3456 1.628327 GGGGAGGGATTACAGGAACCT 60.628 57.143 0.00 0.00 0.00 3.50
3011 3457 0.844660 GGGGAGGGATTACAGGAACC 59.155 60.000 0.00 0.00 0.00 3.62
3012 3458 1.490910 CTGGGGAGGGATTACAGGAAC 59.509 57.143 0.00 0.00 0.00 3.62
3013 3459 1.368203 TCTGGGGAGGGATTACAGGAA 59.632 52.381 0.00 0.00 0.00 3.36
3014 3460 1.023719 TCTGGGGAGGGATTACAGGA 58.976 55.000 0.00 0.00 0.00 3.86
3015 3461 1.132500 GTCTGGGGAGGGATTACAGG 58.868 60.000 0.00 0.00 0.00 4.00
3016 3462 1.132500 GGTCTGGGGAGGGATTACAG 58.868 60.000 0.00 0.00 0.00 2.74
3017 3463 0.327191 GGGTCTGGGGAGGGATTACA 60.327 60.000 0.00 0.00 0.00 2.41
3018 3464 1.060743 GGGGTCTGGGGAGGGATTAC 61.061 65.000 0.00 0.00 0.00 1.89
3019 3465 1.320512 GGGGTCTGGGGAGGGATTA 59.679 63.158 0.00 0.00 0.00 1.75
3020 3466 2.044620 GGGGTCTGGGGAGGGATT 59.955 66.667 0.00 0.00 0.00 3.01
3021 3467 3.300962 TGGGGTCTGGGGAGGGAT 61.301 66.667 0.00 0.00 0.00 3.85
3022 3468 4.348495 GTGGGGTCTGGGGAGGGA 62.348 72.222 0.00 0.00 0.00 4.20
3024 3470 3.891432 AAGGTGGGGTCTGGGGAGG 62.891 68.421 0.00 0.00 0.00 4.30
3025 3471 2.204151 AAGGTGGGGTCTGGGGAG 60.204 66.667 0.00 0.00 0.00 4.30
3026 3472 2.531685 CAAGGTGGGGTCTGGGGA 60.532 66.667 0.00 0.00 0.00 4.81
3027 3473 2.858974 ACAAGGTGGGGTCTGGGG 60.859 66.667 0.00 0.00 0.00 4.96
3028 3474 2.436109 CACAAGGTGGGGTCTGGG 59.564 66.667 0.00 0.00 0.00 4.45
3029 3475 1.228245 CACACAAGGTGGGGTCTGG 60.228 63.158 1.07 0.00 44.04 3.86
3030 3476 4.481195 CACACAAGGTGGGGTCTG 57.519 61.111 1.07 0.00 44.04 3.51
3038 3484 1.729586 TAGAAGCTCCCACACAAGGT 58.270 50.000 0.00 0.00 0.00 3.50
3039 3485 2.636830 CATAGAAGCTCCCACACAAGG 58.363 52.381 0.00 0.00 0.00 3.61
3040 3486 2.012673 GCATAGAAGCTCCCACACAAG 58.987 52.381 0.00 0.00 0.00 3.16
3041 3487 1.350684 TGCATAGAAGCTCCCACACAA 59.649 47.619 0.00 0.00 34.99 3.33
3042 3488 0.983467 TGCATAGAAGCTCCCACACA 59.017 50.000 0.00 0.00 34.99 3.72
3043 3489 1.373570 GTGCATAGAAGCTCCCACAC 58.626 55.000 0.00 0.00 34.99 3.82
3044 3490 0.253044 GGTGCATAGAAGCTCCCACA 59.747 55.000 0.00 0.00 41.18 4.17
3045 3491 0.543749 AGGTGCATAGAAGCTCCCAC 59.456 55.000 0.00 0.00 46.57 4.61
3046 3492 0.543277 CAGGTGCATAGAAGCTCCCA 59.457 55.000 0.00 0.00 46.57 4.37
3047 3493 0.179034 CCAGGTGCATAGAAGCTCCC 60.179 60.000 0.00 0.00 46.57 4.30
3048 3494 0.543749 ACCAGGTGCATAGAAGCTCC 59.456 55.000 0.00 0.00 45.93 4.70
3049 3495 1.484240 AGACCAGGTGCATAGAAGCTC 59.516 52.381 0.00 0.00 34.99 4.09
3050 3496 1.209019 CAGACCAGGTGCATAGAAGCT 59.791 52.381 0.00 0.00 34.99 3.74
3051 3497 1.065854 ACAGACCAGGTGCATAGAAGC 60.066 52.381 0.00 0.00 0.00 3.86
3052 3498 2.419297 GGACAGACCAGGTGCATAGAAG 60.419 54.545 0.00 0.00 38.79 2.85
3053 3499 1.555075 GGACAGACCAGGTGCATAGAA 59.445 52.381 0.00 0.00 38.79 2.10
3054 3500 1.195115 GGACAGACCAGGTGCATAGA 58.805 55.000 0.00 0.00 38.79 1.98
3055 3501 1.198713 AGGACAGACCAGGTGCATAG 58.801 55.000 0.00 0.00 42.04 2.23
3056 3502 1.656587 AAGGACAGACCAGGTGCATA 58.343 50.000 0.00 0.00 42.04 3.14
3057 3503 0.773644 AAAGGACAGACCAGGTGCAT 59.226 50.000 0.00 0.00 42.04 3.96
3058 3504 0.550914 AAAAGGACAGACCAGGTGCA 59.449 50.000 0.00 0.00 42.04 4.57
3059 3505 2.561478 TAAAAGGACAGACCAGGTGC 57.439 50.000 0.00 0.00 42.04 5.01
3060 3506 3.264450 AGGATAAAAGGACAGACCAGGTG 59.736 47.826 0.00 0.00 42.04 4.00
3061 3507 3.532102 AGGATAAAAGGACAGACCAGGT 58.468 45.455 0.00 0.00 42.04 4.00
3062 3508 4.226168 AGAAGGATAAAAGGACAGACCAGG 59.774 45.833 0.00 0.00 42.04 4.45
3063 3509 5.428184 AGAAGGATAAAAGGACAGACCAG 57.572 43.478 0.00 0.00 42.04 4.00
3064 3510 6.945636 TTAGAAGGATAAAAGGACAGACCA 57.054 37.500 0.00 0.00 42.04 4.02
3065 3511 8.809468 AAATTAGAAGGATAAAAGGACAGACC 57.191 34.615 0.00 0.00 39.35 3.85
3113 3559 4.519350 TGTCTACAGGATATACTGAAGCCG 59.481 45.833 22.25 4.92 40.97 5.52
3135 3581 7.306807 CCACAGTTAACACGAGCTATATTCATG 60.307 40.741 8.61 0.00 0.00 3.07
3187 3635 5.617252 TCCAAATACTCCGTTCTTTTCAGT 58.383 37.500 0.00 0.00 0.00 3.41
3432 3881 4.526970 GGGCCAATCTGAGACAGAAAATA 58.473 43.478 4.39 0.00 44.04 1.40
3442 3891 1.987807 ATGTCCCGGGCCAATCTGAG 61.988 60.000 18.49 0.00 0.00 3.35
3443 3892 2.000701 ATGTCCCGGGCCAATCTGA 61.001 57.895 18.49 0.00 0.00 3.27
3504 3953 9.664332 CAATGTTGGGGAATTATTTTGTTGATA 57.336 29.630 0.00 0.00 0.00 2.15
3566 4016 2.716424 ACACTTGGAGGGATTTGAAGGA 59.284 45.455 0.00 0.00 0.00 3.36
3569 4019 2.238521 GCACACTTGGAGGGATTTGAA 58.761 47.619 0.00 0.00 0.00 2.69
3618 4068 4.520492 CCTGATAATACATGCCTTTGGACC 59.480 45.833 0.00 0.00 0.00 4.46
3676 4126 5.419788 TGCACTGAGCCAAAGATATTTGAAT 59.580 36.000 14.30 2.15 44.83 2.57
3677 4127 4.766373 TGCACTGAGCCAAAGATATTTGAA 59.234 37.500 14.30 0.00 44.83 2.69
3703 4153 6.435428 ACTGGTATTTGTGTCGTGATTTTTC 58.565 36.000 0.00 0.00 0.00 2.29
3727 4177 4.974645 AACCATCCAGTTTCACTCACTA 57.025 40.909 0.00 0.00 0.00 2.74
3904 4377 7.817418 TTCAAGAAAGTAGTAGCACCAAAAT 57.183 32.000 0.00 0.00 0.00 1.82
4045 4518 6.018180 CGAATGGGTAAATTAGTAACTGAGCC 60.018 42.308 0.00 0.00 0.00 4.70
4479 5215 0.597377 CCAGTTTGAACCGCCTTTGC 60.597 55.000 0.00 0.00 0.00 3.68
4523 5261 4.516698 CCATGCTTCTGTAGTTTCAACTGT 59.483 41.667 2.26 0.00 40.07 3.55
4544 5282 3.904339 AGAACAGAGCTAGGTTTTCTCCA 59.096 43.478 0.00 0.00 0.00 3.86
4590 5342 3.428045 CCCAGCTTCTTTGCCTAATTTCG 60.428 47.826 0.00 0.00 0.00 3.46
4652 5404 2.094182 GGTCGTGCTTCTGGAGTAATGA 60.094 50.000 0.00 0.00 0.00 2.57
4837 5589 4.433615 CGCCTTTCTAACTATTGAGCAGA 58.566 43.478 0.00 0.00 0.00 4.26
4892 5647 3.334691 TCCAAACATTAGAGCAGAACCG 58.665 45.455 0.00 0.00 0.00 4.44
4893 5648 5.880332 TGTATCCAAACATTAGAGCAGAACC 59.120 40.000 0.00 0.00 0.00 3.62
4894 5649 6.985188 TGTATCCAAACATTAGAGCAGAAC 57.015 37.500 0.00 0.00 0.00 3.01
4895 5650 9.330063 CTATTGTATCCAAACATTAGAGCAGAA 57.670 33.333 0.00 0.00 36.26 3.02
4896 5651 8.486210 ACTATTGTATCCAAACATTAGAGCAGA 58.514 33.333 11.01 0.00 37.04 4.26
4897 5652 8.668510 ACTATTGTATCCAAACATTAGAGCAG 57.331 34.615 11.01 0.00 37.04 4.24
4898 5653 9.461312 AAACTATTGTATCCAAACATTAGAGCA 57.539 29.630 11.01 0.00 37.04 4.26
4899 5654 9.722056 CAAACTATTGTATCCAAACATTAGAGC 57.278 33.333 11.01 0.00 37.04 4.09
4925 5680 6.926272 TGGAAACCACATGCAAATAAAGTTAC 59.074 34.615 0.00 0.00 0.00 2.50
5197 5984 8.427774 GTGAAGCTTCATGTAAAACTAAAATGC 58.572 33.333 30.65 8.97 39.73 3.56


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.