Multiple sequence alignment - TraesCS4A01G297400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G297400 chr4A 100.000 4395 0 0 1 4395 596766433 596770827 0.000000e+00 8117
1 TraesCS4A01G297400 chr4A 94.964 278 14 0 1 278 590230499 590230222 1.880000e-118 436
2 TraesCS4A01G297400 chr4A 94.946 277 14 0 1 277 605057592 605057868 6.750000e-118 435
3 TraesCS4A01G297400 chr4B 90.918 1993 131 23 1837 3798 11907872 11905899 0.000000e+00 2632
4 TraesCS4A01G297400 chr4B 85.139 969 49 40 827 1732 11908961 11908025 0.000000e+00 904
5 TraesCS4A01G297400 chr4B 90.421 261 15 3 4145 4395 11905614 11905354 7.040000e-88 335
6 TraesCS4A01G297400 chr4B 93.820 178 9 2 3938 4113 11905873 11905696 2.610000e-67 267
7 TraesCS4A01G297400 chr4D 86.109 2318 215 56 1877 4124 6646146 6643866 0.000000e+00 2398
8 TraesCS4A01G297400 chr4D 87.858 733 32 22 755 1449 6647210 6646497 0.000000e+00 808
9 TraesCS4A01G297400 chr4D 89.030 237 17 6 4139 4366 6643798 6643562 7.190000e-73 285
10 TraesCS4A01G297400 chr4D 80.000 200 23 9 348 531 6647845 6647647 9.920000e-27 132
11 TraesCS4A01G297400 chr6A 95.307 277 13 0 1 277 546707227 546707503 1.450000e-119 440
12 TraesCS4A01G297400 chr5A 95.307 277 13 0 1 277 121639740 121639464 1.450000e-119 440
13 TraesCS4A01G297400 chr3A 95.307 277 13 0 1 277 197847760 197848036 1.450000e-119 440
14 TraesCS4A01G297400 chr1A 94.982 279 13 1 1 278 369512511 369512789 1.880000e-118 436
15 TraesCS4A01G297400 chr1A 93.993 283 17 0 1 283 282546254 282546536 3.140000e-116 429
16 TraesCS4A01G297400 chr5B 94.604 278 15 0 1 278 641808542 641808265 8.730000e-117 431
17 TraesCS4A01G297400 chr2A 94.624 279 13 1 1 277 150181289 150181567 8.730000e-117 431
18 TraesCS4A01G297400 chr2A 87.958 191 16 4 4212 4395 703560499 703560309 7.400000e-53 219


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G297400 chr4A 596766433 596770827 4394 False 8117.00 8117 100.00000 1 4395 1 chr4A.!!$F1 4394
1 TraesCS4A01G297400 chr4B 11905354 11908961 3607 True 1034.50 2632 90.07450 827 4395 4 chr4B.!!$R1 3568
2 TraesCS4A01G297400 chr4D 6643562 6647845 4283 True 905.75 2398 85.74925 348 4366 4 chr4D.!!$R1 4018

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
403 404 0.108662 GGCCAGTTGCATAACCAAGC 60.109 55.0 0.0 0.0 43.89 4.01 F
1438 1731 0.594796 GCGACCTGCACAAGTTTTGG 60.595 55.0 0.0 0.0 45.45 3.28 F
1826 2228 0.251209 GGTCGGCCCCTCTTTTCTTT 60.251 55.0 0.0 0.0 0.00 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1799 2201 0.323451 GAGGGGCCGACCTTGATTTT 60.323 55.0 1.63 0.0 42.10 1.82 R
3142 3573 0.384353 GAACGCTCCAAACTGTTCGC 60.384 55.0 0.00 0.0 32.38 4.70 R
3807 4272 0.245266 TTAGTTCATGCCGAGCACGA 59.755 50.0 4.70 0.0 43.04 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 5.973899 GGAAAAATTCCTTCAGAGCTCTT 57.026 39.130 15.27 0.00 46.57 2.85
50 51 6.338214 GGAAAAATTCCTTCAGAGCTCTTT 57.662 37.500 15.27 1.02 46.57 2.52
51 52 6.155136 GGAAAAATTCCTTCAGAGCTCTTTG 58.845 40.000 15.27 4.87 46.57 2.77
52 53 5.718724 AAAATTCCTTCAGAGCTCTTTGG 57.281 39.130 15.27 15.93 0.00 3.28
53 54 4.379302 AATTCCTTCAGAGCTCTTTGGT 57.621 40.909 15.27 0.00 0.00 3.67
54 55 3.864789 TTCCTTCAGAGCTCTTTGGTT 57.135 42.857 15.27 0.00 0.00 3.67
55 56 3.864789 TCCTTCAGAGCTCTTTGGTTT 57.135 42.857 15.27 0.00 0.00 3.27
56 57 3.480470 TCCTTCAGAGCTCTTTGGTTTG 58.520 45.455 15.27 1.50 0.00 2.93
57 58 3.117888 TCCTTCAGAGCTCTTTGGTTTGT 60.118 43.478 15.27 0.00 31.30 2.83
58 59 4.102524 TCCTTCAGAGCTCTTTGGTTTGTA 59.897 41.667 15.27 0.00 31.30 2.41
59 60 4.453819 CCTTCAGAGCTCTTTGGTTTGTAG 59.546 45.833 15.27 5.08 31.30 2.74
60 61 4.008074 TCAGAGCTCTTTGGTTTGTAGG 57.992 45.455 15.27 0.00 31.30 3.18
61 62 3.646162 TCAGAGCTCTTTGGTTTGTAGGA 59.354 43.478 15.27 0.20 31.30 2.94
62 63 4.102524 TCAGAGCTCTTTGGTTTGTAGGAA 59.897 41.667 15.27 0.00 31.30 3.36
63 64 5.006386 CAGAGCTCTTTGGTTTGTAGGAAT 58.994 41.667 15.27 0.00 0.00 3.01
64 65 5.006386 AGAGCTCTTTGGTTTGTAGGAATG 58.994 41.667 11.45 0.00 0.00 2.67
65 66 4.985538 AGCTCTTTGGTTTGTAGGAATGA 58.014 39.130 0.00 0.00 0.00 2.57
66 67 5.385198 AGCTCTTTGGTTTGTAGGAATGAA 58.615 37.500 0.00 0.00 0.00 2.57
67 68 5.833131 AGCTCTTTGGTTTGTAGGAATGAAA 59.167 36.000 0.00 0.00 0.00 2.69
68 69 6.494835 AGCTCTTTGGTTTGTAGGAATGAAAT 59.505 34.615 0.00 0.00 0.00 2.17
69 70 6.808704 GCTCTTTGGTTTGTAGGAATGAAATC 59.191 38.462 0.00 0.00 0.00 2.17
70 71 7.523709 GCTCTTTGGTTTGTAGGAATGAAATCA 60.524 37.037 0.00 0.00 0.00 2.57
71 72 8.421249 TCTTTGGTTTGTAGGAATGAAATCAT 57.579 30.769 0.00 0.00 38.41 2.45
72 73 9.527157 TCTTTGGTTTGTAGGAATGAAATCATA 57.473 29.630 0.00 0.00 35.10 2.15
84 85 8.517062 GGAATGAAATCATATTCCTATGGAGG 57.483 38.462 8.37 0.00 45.66 4.30
85 86 8.331740 GGAATGAAATCATATTCCTATGGAGGA 58.668 37.037 8.37 0.00 45.66 3.71
105 106 6.838401 AGGAATTCTTTCTATCCTCCACAT 57.162 37.500 5.23 0.00 37.80 3.21
106 107 7.218314 AGGAATTCTTTCTATCCTCCACATT 57.782 36.000 5.23 0.00 37.80 2.71
107 108 7.646884 AGGAATTCTTTCTATCCTCCACATTT 58.353 34.615 5.23 0.00 37.80 2.32
108 109 7.777440 AGGAATTCTTTCTATCCTCCACATTTC 59.223 37.037 5.23 0.00 37.80 2.17
109 110 7.557719 GGAATTCTTTCTATCCTCCACATTTCA 59.442 37.037 5.23 0.00 32.16 2.69
110 111 9.129532 GAATTCTTTCTATCCTCCACATTTCAT 57.870 33.333 0.00 0.00 0.00 2.57
112 113 9.790344 ATTCTTTCTATCCTCCACATTTCATAG 57.210 33.333 0.00 0.00 0.00 2.23
113 114 7.739825 TCTTTCTATCCTCCACATTTCATAGG 58.260 38.462 0.00 0.00 0.00 2.57
114 115 7.568738 TCTTTCTATCCTCCACATTTCATAGGA 59.431 37.037 0.00 0.00 40.50 2.94
115 116 7.690454 TTCTATCCTCCACATTTCATAGGAA 57.310 36.000 0.00 0.00 39.68 3.36
116 117 7.690454 TCTATCCTCCACATTTCATAGGAAA 57.310 36.000 4.85 4.85 46.36 3.13
117 118 8.101309 TCTATCCTCCACATTTCATAGGAAAA 57.899 34.615 6.65 0.00 45.52 2.29
118 119 8.727149 TCTATCCTCCACATTTCATAGGAAAAT 58.273 33.333 6.65 0.00 45.52 1.82
121 122 9.713684 ATCCTCCACATTTCATAGGAAAATAAA 57.286 29.630 6.65 0.00 45.52 1.40
122 123 8.966868 TCCTCCACATTTCATAGGAAAATAAAC 58.033 33.333 6.65 0.00 45.52 2.01
123 124 8.748412 CCTCCACATTTCATAGGAAAATAAACA 58.252 33.333 6.65 0.00 45.52 2.83
132 133 9.693739 TTCATAGGAAAATAAACATTAGCCTGA 57.306 29.630 0.00 0.00 0.00 3.86
133 134 9.693739 TCATAGGAAAATAAACATTAGCCTGAA 57.306 29.630 0.00 0.00 0.00 3.02
134 135 9.736023 CATAGGAAAATAAACATTAGCCTGAAC 57.264 33.333 0.00 0.00 0.00 3.18
135 136 9.700831 ATAGGAAAATAAACATTAGCCTGAACT 57.299 29.630 0.00 0.00 0.00 3.01
136 137 8.056407 AGGAAAATAAACATTAGCCTGAACTC 57.944 34.615 0.00 0.00 0.00 3.01
137 138 7.669722 AGGAAAATAAACATTAGCCTGAACTCA 59.330 33.333 0.00 0.00 0.00 3.41
138 139 8.303876 GGAAAATAAACATTAGCCTGAACTCAA 58.696 33.333 0.00 0.00 0.00 3.02
139 140 9.860898 GAAAATAAACATTAGCCTGAACTCAAT 57.139 29.630 0.00 0.00 0.00 2.57
140 141 9.643693 AAAATAAACATTAGCCTGAACTCAATG 57.356 29.630 0.00 0.00 33.75 2.82
141 142 5.649782 AAACATTAGCCTGAACTCAATGG 57.350 39.130 0.00 0.00 32.20 3.16
142 143 4.574674 ACATTAGCCTGAACTCAATGGA 57.425 40.909 0.00 0.00 32.20 3.41
143 144 4.922206 ACATTAGCCTGAACTCAATGGAA 58.078 39.130 0.00 0.00 32.20 3.53
144 145 5.324409 ACATTAGCCTGAACTCAATGGAAA 58.676 37.500 0.00 0.00 32.20 3.13
145 146 5.774690 ACATTAGCCTGAACTCAATGGAAAA 59.225 36.000 0.00 0.00 32.20 2.29
146 147 6.267471 ACATTAGCCTGAACTCAATGGAAAAA 59.733 34.615 0.00 0.00 32.20 1.94
169 170 7.592885 AAATCCTATGATGTGAATCAAAGGG 57.407 36.000 0.00 0.00 33.83 3.95
170 171 4.464008 TCCTATGATGTGAATCAAAGGGC 58.536 43.478 0.00 0.00 33.83 5.19
171 172 4.079844 TCCTATGATGTGAATCAAAGGGCA 60.080 41.667 0.00 0.00 33.83 5.36
172 173 4.831155 CCTATGATGTGAATCAAAGGGCAT 59.169 41.667 0.00 0.00 33.83 4.40
173 174 4.931661 ATGATGTGAATCAAAGGGCATC 57.068 40.909 4.45 4.45 33.83 3.91
174 175 3.972133 TGATGTGAATCAAAGGGCATCT 58.028 40.909 10.68 0.00 35.22 2.90
175 176 3.949754 TGATGTGAATCAAAGGGCATCTC 59.050 43.478 10.68 0.00 35.22 2.75
176 177 2.726821 TGTGAATCAAAGGGCATCTCC 58.273 47.619 0.00 0.00 0.00 3.71
177 178 2.309755 TGTGAATCAAAGGGCATCTCCT 59.690 45.455 0.00 0.00 39.17 3.69
187 188 4.445557 AGGGCATCTCCTTTTCTATTCC 57.554 45.455 0.00 0.00 32.13 3.01
188 189 4.050757 AGGGCATCTCCTTTTCTATTCCT 58.949 43.478 0.00 0.00 32.13 3.36
189 190 5.227593 AGGGCATCTCCTTTTCTATTCCTA 58.772 41.667 0.00 0.00 32.13 2.94
190 191 5.854481 AGGGCATCTCCTTTTCTATTCCTAT 59.146 40.000 0.00 0.00 32.13 2.57
191 192 5.942826 GGGCATCTCCTTTTCTATTCCTATG 59.057 44.000 0.00 0.00 34.39 2.23
192 193 5.414144 GGCATCTCCTTTTCTATTCCTATGC 59.586 44.000 0.00 0.00 36.22 3.14
193 194 6.000219 GCATCTCCTTTTCTATTCCTATGCA 59.000 40.000 0.00 0.00 36.79 3.96
194 195 6.658391 GCATCTCCTTTTCTATTCCTATGCAT 59.342 38.462 3.79 3.79 36.79 3.96
195 196 7.826252 GCATCTCCTTTTCTATTCCTATGCATA 59.174 37.037 6.20 6.20 36.79 3.14
196 197 9.381033 CATCTCCTTTTCTATTCCTATGCATAG 57.619 37.037 24.33 24.33 0.00 2.23
213 214 5.044428 GCATAGGATTTGAGATGCATGTC 57.956 43.478 16.63 16.63 43.36 3.06
214 215 4.517832 GCATAGGATTTGAGATGCATGTCA 59.482 41.667 21.70 21.70 43.36 3.58
215 216 5.183331 GCATAGGATTTGAGATGCATGTCAT 59.817 40.000 25.41 13.07 43.36 3.06
216 217 6.294564 GCATAGGATTTGAGATGCATGTCATT 60.295 38.462 25.41 16.56 43.36 2.57
217 218 7.658261 CATAGGATTTGAGATGCATGTCATTT 58.342 34.615 25.41 16.23 35.05 2.32
218 219 6.145338 AGGATTTGAGATGCATGTCATTTC 57.855 37.500 25.41 22.15 36.96 2.17
219 220 5.655090 AGGATTTGAGATGCATGTCATTTCA 59.345 36.000 25.41 9.43 42.45 2.69
220 221 6.323996 AGGATTTGAGATGCATGTCATTTCAT 59.676 34.615 25.41 18.90 43.25 2.57
221 222 6.984474 GGATTTGAGATGCATGTCATTTCATT 59.016 34.615 25.41 8.54 43.25 2.57
222 223 7.494625 GGATTTGAGATGCATGTCATTTCATTT 59.505 33.333 25.41 7.22 43.25 2.32
223 224 7.821595 TTTGAGATGCATGTCATTTCATTTC 57.178 32.000 25.41 7.75 43.25 2.17
224 225 5.898174 TGAGATGCATGTCATTTCATTTCC 58.102 37.500 21.70 0.00 40.21 3.13
225 226 5.655090 TGAGATGCATGTCATTTCATTTCCT 59.345 36.000 21.70 0.00 40.21 3.36
226 227 5.902681 AGATGCATGTCATTTCATTTCCTG 58.097 37.500 2.46 0.00 35.05 3.86
227 228 5.421056 AGATGCATGTCATTTCATTTCCTGT 59.579 36.000 2.46 0.00 35.05 4.00
228 229 4.811908 TGCATGTCATTTCATTTCCTGTG 58.188 39.130 0.00 0.00 0.00 3.66
229 230 4.523558 TGCATGTCATTTCATTTCCTGTGA 59.476 37.500 0.00 0.00 0.00 3.58
230 231 4.860907 GCATGTCATTTCATTTCCTGTGAC 59.139 41.667 0.00 0.00 37.18 3.67
231 232 5.336213 GCATGTCATTTCATTTCCTGTGACT 60.336 40.000 0.00 0.00 37.46 3.41
232 233 6.684686 CATGTCATTTCATTTCCTGTGACTT 58.315 36.000 0.00 0.00 37.46 3.01
233 234 6.713762 TGTCATTTCATTTCCTGTGACTTT 57.286 33.333 0.00 0.00 37.46 2.66
234 235 7.111247 TGTCATTTCATTTCCTGTGACTTTT 57.889 32.000 0.00 0.00 37.46 2.27
235 236 7.202526 TGTCATTTCATTTCCTGTGACTTTTC 58.797 34.615 0.00 0.00 37.46 2.29
236 237 7.068593 TGTCATTTCATTTCCTGTGACTTTTCT 59.931 33.333 0.00 0.00 37.46 2.52
237 238 8.567948 GTCATTTCATTTCCTGTGACTTTTCTA 58.432 33.333 0.00 0.00 34.63 2.10
238 239 9.300681 TCATTTCATTTCCTGTGACTTTTCTAT 57.699 29.630 0.00 0.00 0.00 1.98
239 240 9.918630 CATTTCATTTCCTGTGACTTTTCTATT 57.081 29.630 0.00 0.00 0.00 1.73
241 242 9.965824 TTTCATTTCCTGTGACTTTTCTATTTC 57.034 29.630 0.00 0.00 0.00 2.17
242 243 8.924511 TCATTTCCTGTGACTTTTCTATTTCT 57.075 30.769 0.00 0.00 0.00 2.52
273 274 9.762933 TTTTTCAATCTTATGAACCAAAAGAGG 57.237 29.630 0.00 0.00 38.95 3.69
274 275 6.515272 TCAATCTTATGAACCAAAAGAGGC 57.485 37.500 0.00 0.00 33.05 4.70
275 276 5.418840 TCAATCTTATGAACCAAAAGAGGCC 59.581 40.000 0.00 0.00 33.05 5.19
276 277 4.657814 TCTTATGAACCAAAAGAGGCCT 57.342 40.909 3.86 3.86 0.00 5.19
277 278 5.772393 TCTTATGAACCAAAAGAGGCCTA 57.228 39.130 4.42 0.00 0.00 3.93
278 279 6.327386 TCTTATGAACCAAAAGAGGCCTAT 57.673 37.500 4.42 0.00 0.00 2.57
279 280 6.731467 TCTTATGAACCAAAAGAGGCCTATT 58.269 36.000 4.42 5.79 0.00 1.73
280 281 7.867921 TCTTATGAACCAAAAGAGGCCTATTA 58.132 34.615 14.20 0.00 0.00 0.98
281 282 8.502738 TCTTATGAACCAAAAGAGGCCTATTAT 58.497 33.333 14.20 3.77 0.00 1.28
282 283 9.136323 CTTATGAACCAAAAGAGGCCTATTATT 57.864 33.333 14.20 7.34 0.00 1.40
283 284 7.588497 ATGAACCAAAAGAGGCCTATTATTC 57.412 36.000 14.20 14.51 0.00 1.75
284 285 6.489603 TGAACCAAAAGAGGCCTATTATTCA 58.510 36.000 14.20 16.70 0.00 2.57
285 286 6.377146 TGAACCAAAAGAGGCCTATTATTCAC 59.623 38.462 14.20 4.81 0.00 3.18
286 287 5.201243 ACCAAAAGAGGCCTATTATTCACC 58.799 41.667 14.20 0.00 0.00 4.02
287 288 5.044105 ACCAAAAGAGGCCTATTATTCACCT 60.044 40.000 14.20 0.00 0.00 4.00
288 289 5.300286 CCAAAAGAGGCCTATTATTCACCTG 59.700 44.000 14.20 1.68 0.00 4.00
289 290 4.713792 AAGAGGCCTATTATTCACCTGG 57.286 45.455 11.88 0.00 0.00 4.45
290 291 3.941629 AGAGGCCTATTATTCACCTGGA 58.058 45.455 4.42 0.00 0.00 3.86
291 292 4.307259 AGAGGCCTATTATTCACCTGGAA 58.693 43.478 4.42 0.00 40.46 3.53
292 293 4.726825 AGAGGCCTATTATTCACCTGGAAA 59.273 41.667 4.42 0.00 39.39 3.13
293 294 5.053978 AGGCCTATTATTCACCTGGAAAG 57.946 43.478 1.29 0.00 39.39 2.62
294 295 4.141158 AGGCCTATTATTCACCTGGAAAGG 60.141 45.833 1.29 0.00 39.39 3.11
295 296 4.145052 GCCTATTATTCACCTGGAAAGGG 58.855 47.826 0.00 0.00 39.39 3.95
296 297 4.386424 GCCTATTATTCACCTGGAAAGGGT 60.386 45.833 0.00 0.00 39.39 4.34
297 298 5.163131 GCCTATTATTCACCTGGAAAGGGTA 60.163 44.000 0.00 0.00 39.39 3.69
298 299 6.296803 CCTATTATTCACCTGGAAAGGGTAC 58.703 44.000 0.00 0.00 39.39 3.34
299 300 4.579647 TTATTCACCTGGAAAGGGTACC 57.420 45.455 2.17 2.17 43.85 3.34
300 301 1.280998 ATTCACCTGGAAAGGGTACCG 59.719 52.381 5.65 0.00 46.86 4.02
301 302 3.095183 ATTCACCTGGAAAGGGTACCGA 61.095 50.000 5.65 0.00 46.86 4.69
302 303 5.201262 ATTCACCTGGAAAGGGTACCGAC 62.201 52.174 5.65 0.00 46.86 4.79
317 318 2.997345 CGACTGACTCGGTGTAACG 58.003 57.895 0.00 0.00 38.87 3.18
318 319 1.063951 CGACTGACTCGGTGTAACGC 61.064 60.000 0.00 0.00 38.87 4.84
319 320 1.063951 GACTGACTCGGTGTAACGCG 61.064 60.000 3.53 3.53 38.12 6.01
320 321 1.081641 CTGACTCGGTGTAACGCGT 60.082 57.895 5.58 5.58 38.12 6.01
321 322 1.334992 CTGACTCGGTGTAACGCGTG 61.335 60.000 14.98 0.00 38.12 5.34
322 323 2.713894 GACTCGGTGTAACGCGTGC 61.714 63.158 14.98 10.13 38.12 5.34
323 324 2.430244 CTCGGTGTAACGCGTGCT 60.430 61.111 14.98 0.00 38.12 4.40
324 325 2.716828 CTCGGTGTAACGCGTGCTG 61.717 63.158 14.98 9.18 38.12 4.41
325 326 4.424430 CGGTGTAACGCGTGCTGC 62.424 66.667 14.98 1.32 38.12 5.25
326 327 4.084888 GGTGTAACGCGTGCTGCC 62.085 66.667 14.98 10.11 42.08 4.85
327 328 3.041940 GTGTAACGCGTGCTGCCT 61.042 61.111 14.98 0.00 42.08 4.75
328 329 2.736995 TGTAACGCGTGCTGCCTC 60.737 61.111 14.98 0.00 42.08 4.70
329 330 3.838795 GTAACGCGTGCTGCCTCG 61.839 66.667 14.98 9.34 42.08 4.63
330 331 4.351938 TAACGCGTGCTGCCTCGT 62.352 61.111 14.98 9.79 42.08 4.18
335 336 2.664851 CGTGCTGCCTCGTGGAAA 60.665 61.111 7.92 0.00 34.57 3.13
336 337 2.946762 GTGCTGCCTCGTGGAAAC 59.053 61.111 7.92 0.00 34.57 2.78
337 338 1.598130 GTGCTGCCTCGTGGAAACT 60.598 57.895 7.92 0.00 34.57 2.66
338 339 1.597854 TGCTGCCTCGTGGAAACTG 60.598 57.895 7.92 0.00 34.57 3.16
339 340 1.301716 GCTGCCTCGTGGAAACTGA 60.302 57.895 7.92 0.00 34.57 3.41
340 341 1.294659 GCTGCCTCGTGGAAACTGAG 61.295 60.000 7.92 0.00 34.57 3.35
341 342 0.318441 CTGCCTCGTGGAAACTGAGA 59.682 55.000 7.92 0.00 36.15 3.27
342 343 0.318441 TGCCTCGTGGAAACTGAGAG 59.682 55.000 7.92 0.00 36.15 3.20
343 344 0.603569 GCCTCGTGGAAACTGAGAGA 59.396 55.000 7.92 0.00 36.15 3.10
344 345 1.403514 GCCTCGTGGAAACTGAGAGAG 60.404 57.143 7.92 0.00 36.15 3.20
345 346 1.203523 CCTCGTGGAAACTGAGAGAGG 59.796 57.143 0.00 0.00 37.95 3.69
346 347 1.889829 CTCGTGGAAACTGAGAGAGGT 59.110 52.381 0.00 0.00 36.15 3.85
362 363 2.091278 AGAGGTCTATGGTTCATCGGGA 60.091 50.000 0.00 0.00 0.00 5.14
364 365 2.700897 AGGTCTATGGTTCATCGGGAAG 59.299 50.000 0.00 0.00 35.82 3.46
378 379 2.470286 GAAGTCGAAAGTGGCGCG 59.530 61.111 0.00 0.00 0.00 6.86
381 382 2.694829 AAGTCGAAAGTGGCGCGTCT 62.695 55.000 13.81 3.30 0.00 4.18
400 401 0.403655 TCAGGCCAGTTGCATAACCA 59.596 50.000 5.01 0.00 43.89 3.67
402 403 1.203052 CAGGCCAGTTGCATAACCAAG 59.797 52.381 5.01 0.00 43.89 3.61
403 404 0.108662 GGCCAGTTGCATAACCAAGC 60.109 55.000 0.00 0.00 43.89 4.01
404 405 0.602562 GCCAGTTGCATAACCAAGCA 59.397 50.000 0.00 0.00 40.77 3.91
405 406 1.669795 GCCAGTTGCATAACCAAGCAC 60.670 52.381 0.00 0.00 41.05 4.40
406 407 1.888512 CCAGTTGCATAACCAAGCACT 59.111 47.619 0.00 0.00 41.05 4.40
407 408 2.352030 CCAGTTGCATAACCAAGCACTG 60.352 50.000 3.01 3.01 41.05 3.66
408 409 1.270550 AGTTGCATAACCAAGCACTGC 59.729 47.619 0.00 0.00 41.05 4.40
412 413 2.684374 TGCATAACCAAGCACTGCTATG 59.316 45.455 3.33 5.23 38.25 2.23
418 419 3.424703 ACCAAGCACTGCTATGACAATT 58.575 40.909 3.33 0.00 38.25 2.32
419 420 3.828451 ACCAAGCACTGCTATGACAATTT 59.172 39.130 3.33 0.00 38.25 1.82
426 427 6.259608 AGCACTGCTATGACAATTTAGTGATC 59.740 38.462 0.21 0.00 36.99 2.92
437 438 8.128582 TGACAATTTAGTGATCGAATAAATGGC 58.871 33.333 9.21 7.39 31.30 4.40
441 442 3.480470 AGTGATCGAATAAATGGCCTGG 58.520 45.455 3.32 0.00 0.00 4.45
442 443 3.117888 AGTGATCGAATAAATGGCCTGGT 60.118 43.478 3.32 0.00 0.00 4.00
457 473 3.044235 CCTGGTGAAAAAGGCCATTTC 57.956 47.619 21.09 21.09 37.31 2.17
489 505 6.429078 GCATATCTGTAATCAGGAGCATTTCA 59.571 38.462 0.00 0.00 41.59 2.69
492 508 7.707624 ATCTGTAATCAGGAGCATTTCAAAA 57.292 32.000 0.00 0.00 41.59 2.44
499 515 8.992835 AATCAGGAGCATTTCAAAAGTAAATC 57.007 30.769 0.00 0.00 0.00 2.17
503 519 7.543520 CAGGAGCATTTCAAAAGTAAATCCTTC 59.456 37.037 0.00 0.00 0.00 3.46
505 521 6.701340 AGCATTTCAAAAGTAAATCCTTCCC 58.299 36.000 0.00 0.00 0.00 3.97
513 529 9.160412 TCAAAAGTAAATCCTTCCCCAAAATAA 57.840 29.630 0.00 0.00 0.00 1.40
528 544 7.292591 TCCCCAAAATAAATGGAGTTTAAACCA 59.707 33.333 14.72 7.34 40.56 3.67
531 547 7.877612 CCAAAATAAATGGAGTTTAAACCAGCT 59.122 33.333 14.72 0.00 40.56 4.24
532 548 9.271828 CAAAATAAATGGAGTTTAAACCAGCTT 57.728 29.630 14.72 7.28 39.62 3.74
533 549 9.489084 AAAATAAATGGAGTTTAAACCAGCTTC 57.511 29.630 14.72 5.46 39.62 3.86
539 723 1.136057 GTTTAAACCAGCTTCGAGGCG 60.136 52.381 14.34 8.95 37.29 5.52
544 728 4.521062 CAGCTTCGAGGCGAGGGG 62.521 72.222 14.34 0.00 37.14 4.79
555 739 2.041922 CGAGGGGGACATGGAGGA 60.042 66.667 0.00 0.00 0.00 3.71
558 742 1.616628 AGGGGGACATGGAGGACAC 60.617 63.158 0.00 0.00 0.00 3.67
559 743 2.680370 GGGGGACATGGAGGACACC 61.680 68.421 0.00 0.00 0.00 4.16
560 744 1.923395 GGGGACATGGAGGACACCA 60.923 63.158 0.00 0.00 44.41 4.17
563 747 0.911769 GGACATGGAGGACACCATCA 59.088 55.000 0.00 0.00 46.24 3.07
569 753 1.517257 GAGGACACCATCACGAGCG 60.517 63.158 0.00 0.00 0.00 5.03
582 766 4.736896 GAGCGCCGTTCCTCCGTT 62.737 66.667 2.29 0.00 0.00 4.44
585 769 4.367023 CGCCGTTCCTCCGTTCCA 62.367 66.667 0.00 0.00 0.00 3.53
586 770 2.031465 GCCGTTCCTCCGTTCCAA 59.969 61.111 0.00 0.00 0.00 3.53
587 771 1.598685 GCCGTTCCTCCGTTCCAAA 60.599 57.895 0.00 0.00 0.00 3.28
588 772 1.167781 GCCGTTCCTCCGTTCCAAAA 61.168 55.000 0.00 0.00 0.00 2.44
604 788 5.585500 TCCAAAACGATTGAAGTTCTACG 57.415 39.130 4.17 9.38 0.00 3.51
605 789 5.051816 TCCAAAACGATTGAAGTTCTACGT 58.948 37.500 4.17 9.97 35.56 3.57
606 790 5.524646 TCCAAAACGATTGAAGTTCTACGTT 59.475 36.000 20.29 20.29 43.76 3.99
609 793 5.978934 AACGATTGAAGTTCTACGTTTGT 57.021 34.783 20.29 7.63 40.15 2.83
610 794 5.571778 ACGATTGAAGTTCTACGTTTGTC 57.428 39.130 4.17 0.00 0.00 3.18
612 796 6.441274 ACGATTGAAGTTCTACGTTTGTCTA 58.559 36.000 4.17 0.00 0.00 2.59
613 797 6.581542 ACGATTGAAGTTCTACGTTTGTCTAG 59.418 38.462 4.17 0.00 0.00 2.43
614 798 6.800408 CGATTGAAGTTCTACGTTTGTCTAGA 59.200 38.462 4.17 0.00 0.00 2.43
616 800 6.630444 TGAAGTTCTACGTTTGTCTAGAGT 57.370 37.500 4.17 0.00 0.00 3.24
618 802 6.261603 TGAAGTTCTACGTTTGTCTAGAGTCA 59.738 38.462 4.17 0.00 0.00 3.41
619 803 6.630444 AGTTCTACGTTTGTCTAGAGTCAA 57.370 37.500 0.00 0.00 0.00 3.18
620 804 7.035840 AGTTCTACGTTTGTCTAGAGTCAAA 57.964 36.000 0.00 4.79 32.37 2.69
621 805 6.916932 AGTTCTACGTTTGTCTAGAGTCAAAC 59.083 38.462 20.93 20.93 44.57 2.93
624 808 5.968387 ACGTTTGTCTAGAGTCAAACTTG 57.032 39.130 24.90 17.44 45.26 3.16
625 809 5.416947 ACGTTTGTCTAGAGTCAAACTTGT 58.583 37.500 24.90 17.88 45.26 3.16
627 811 6.370718 ACGTTTGTCTAGAGTCAAACTTGTTT 59.629 34.615 24.90 10.27 45.26 2.83
628 812 7.546667 ACGTTTGTCTAGAGTCAAACTTGTTTA 59.453 33.333 24.90 0.00 45.26 2.01
629 813 8.385111 CGTTTGTCTAGAGTCAAACTTGTTTAA 58.615 33.333 24.90 0.00 45.26 1.52
674 858 8.519799 AAAATATGGTAAGATCCACGAAATGT 57.480 30.769 0.00 0.00 40.51 2.71
675 859 9.621629 AAAATATGGTAAGATCCACGAAATGTA 57.378 29.630 0.00 0.00 40.51 2.29
676 860 9.621629 AAATATGGTAAGATCCACGAAATGTAA 57.378 29.630 0.00 0.00 40.51 2.41
677 861 9.793259 AATATGGTAAGATCCACGAAATGTAAT 57.207 29.630 0.00 0.00 40.51 1.89
680 864 8.428186 TGGTAAGATCCACGAAATGTAATAAC 57.572 34.615 0.00 0.00 31.96 1.89
681 865 8.041919 TGGTAAGATCCACGAAATGTAATAACA 58.958 33.333 0.00 0.00 34.58 2.41
682 866 8.885722 GGTAAGATCCACGAAATGTAATAACAA 58.114 33.333 0.00 0.00 39.58 2.83
782 1016 2.733858 CGTCCACCCAAACACAAACAAG 60.734 50.000 0.00 0.00 0.00 3.16
783 1017 2.494073 GTCCACCCAAACACAAACAAGA 59.506 45.455 0.00 0.00 0.00 3.02
785 1019 3.578716 TCCACCCAAACACAAACAAGAAA 59.421 39.130 0.00 0.00 0.00 2.52
786 1020 3.682377 CCACCCAAACACAAACAAGAAAC 59.318 43.478 0.00 0.00 0.00 2.78
787 1021 4.310769 CACCCAAACACAAACAAGAAACA 58.689 39.130 0.00 0.00 0.00 2.83
788 1022 4.752101 CACCCAAACACAAACAAGAAACAA 59.248 37.500 0.00 0.00 0.00 2.83
791 1025 5.237344 CCCAAACACAAACAAGAAACAAACA 59.763 36.000 0.00 0.00 0.00 2.83
792 1026 6.132724 CCAAACACAAACAAGAAACAAACAC 58.867 36.000 0.00 0.00 0.00 3.32
793 1027 6.238211 CCAAACACAAACAAGAAACAAACACA 60.238 34.615 0.00 0.00 0.00 3.72
794 1028 6.523676 AACACAAACAAGAAACAAACACAG 57.476 33.333 0.00 0.00 0.00 3.66
795 1029 4.987912 ACACAAACAAGAAACAAACACAGG 59.012 37.500 0.00 0.00 0.00 4.00
796 1030 5.221342 ACACAAACAAGAAACAAACACAGGA 60.221 36.000 0.00 0.00 0.00 3.86
797 1031 5.118510 CACAAACAAGAAACAAACACAGGAC 59.881 40.000 0.00 0.00 0.00 3.85
798 1032 4.450082 AACAAGAAACAAACACAGGACC 57.550 40.909 0.00 0.00 0.00 4.46
799 1033 2.422127 ACAAGAAACAAACACAGGACCG 59.578 45.455 0.00 0.00 0.00 4.79
800 1034 2.680841 CAAGAAACAAACACAGGACCGA 59.319 45.455 0.00 0.00 0.00 4.69
801 1035 2.561569 AGAAACAAACACAGGACCGAG 58.438 47.619 0.00 0.00 0.00 4.63
802 1036 1.602377 GAAACAAACACAGGACCGAGG 59.398 52.381 0.00 0.00 0.00 4.63
842 1076 4.924187 CCCGTGCCCACCCCAAAA 62.924 66.667 0.00 0.00 0.00 2.44
843 1077 3.611674 CCGTGCCCACCCCAAAAC 61.612 66.667 0.00 0.00 0.00 2.43
944 1191 2.742372 CGGCAGTGGTCCCTTTCG 60.742 66.667 0.00 0.00 0.00 3.46
1253 1527 4.329545 GACCAACGCCAGGCTCCA 62.330 66.667 10.54 0.00 0.00 3.86
1254 1528 4.335647 ACCAACGCCAGGCTCCAG 62.336 66.667 10.54 0.00 0.00 3.86
1268 1549 0.911769 CTCCAGGCCAGGACAATGTA 59.088 55.000 13.92 0.00 33.19 2.29
1269 1550 1.492176 CTCCAGGCCAGGACAATGTAT 59.508 52.381 13.92 0.00 33.19 2.29
1279 1560 4.283212 CCAGGACAATGTATGTGGGTTTTT 59.717 41.667 0.00 0.00 44.12 1.94
1316 1600 2.677979 GCTCTCGTTTGGTTCCGCC 61.678 63.158 0.00 0.00 37.90 6.13
1322 1606 1.895231 GTTTGGTTCCGCCTCCGTT 60.895 57.895 0.00 0.00 38.35 4.44
1323 1607 1.894756 TTTGGTTCCGCCTCCGTTG 60.895 57.895 0.00 0.00 38.35 4.10
1347 1633 1.510480 GCTGACGAGGCTTTTGCTGT 61.510 55.000 0.00 0.00 46.54 4.40
1349 1635 0.944386 TGACGAGGCTTTTGCTGTTC 59.056 50.000 0.00 0.00 46.54 3.18
1437 1730 0.929824 CGCGACCTGCACAAGTTTTG 60.930 55.000 0.00 0.00 46.97 2.44
1438 1731 0.594796 GCGACCTGCACAAGTTTTGG 60.595 55.000 0.00 0.00 45.45 3.28
1449 1745 1.345415 CAAGTTTTGGCCCTTGCATCT 59.655 47.619 0.00 0.00 40.13 2.90
1472 1768 3.610040 TTTCTTCTCGCTATCCTTGCA 57.390 42.857 0.00 0.00 0.00 4.08
1485 1781 3.057969 TCCTTGCAGTAGATGTTGGTG 57.942 47.619 0.00 0.00 0.00 4.17
1524 1820 4.077180 GGGAGGGAGGTCGGGACT 62.077 72.222 0.00 0.00 0.00 3.85
1525 1821 2.039137 GGAGGGAGGTCGGGACTT 59.961 66.667 0.00 0.00 0.00 3.01
1526 1822 2.359967 GGAGGGAGGTCGGGACTTG 61.360 68.421 0.00 0.00 0.00 3.16
1528 1824 3.400054 GGGAGGTCGGGACTTGGG 61.400 72.222 0.00 0.00 0.00 4.12
1529 1825 2.606826 GGAGGTCGGGACTTGGGT 60.607 66.667 0.00 0.00 0.00 4.51
1564 1862 4.796946 GCTGAGATCTCTGGTCATGTGATC 60.797 50.000 25.58 6.34 35.74 2.92
1575 1873 3.596214 GTCATGTGATCGGTTTAGTGGT 58.404 45.455 0.00 0.00 0.00 4.16
1576 1874 3.370978 GTCATGTGATCGGTTTAGTGGTG 59.629 47.826 0.00 0.00 0.00 4.17
1579 1877 2.569853 TGTGATCGGTTTAGTGGTGGAT 59.430 45.455 0.00 0.00 0.00 3.41
1580 1878 2.936498 GTGATCGGTTTAGTGGTGGATG 59.064 50.000 0.00 0.00 0.00 3.51
1581 1879 2.835156 TGATCGGTTTAGTGGTGGATGA 59.165 45.455 0.00 0.00 0.00 2.92
1582 1880 3.454447 TGATCGGTTTAGTGGTGGATGAT 59.546 43.478 0.00 0.00 0.00 2.45
1583 1881 3.260475 TCGGTTTAGTGGTGGATGATG 57.740 47.619 0.00 0.00 0.00 3.07
1584 1882 2.093181 TCGGTTTAGTGGTGGATGATGG 60.093 50.000 0.00 0.00 0.00 3.51
1585 1883 2.024414 GGTTTAGTGGTGGATGATGGC 58.976 52.381 0.00 0.00 0.00 4.40
1586 1884 2.357154 GGTTTAGTGGTGGATGATGGCT 60.357 50.000 0.00 0.00 0.00 4.75
1589 1887 0.700564 AGTGGTGGATGATGGCTTGT 59.299 50.000 0.00 0.00 0.00 3.16
1591 1889 2.092753 AGTGGTGGATGATGGCTTGTAG 60.093 50.000 0.00 0.00 0.00 2.74
1592 1890 1.915489 TGGTGGATGATGGCTTGTAGT 59.085 47.619 0.00 0.00 0.00 2.73
1624 1922 3.580895 TGTACTTGCTCACTGGGATTGTA 59.419 43.478 0.00 0.00 0.00 2.41
1627 1925 2.042686 TGCTCACTGGGATTGTATGC 57.957 50.000 0.00 0.00 0.00 3.14
1635 1933 3.245229 ACTGGGATTGTATGCCTGAAACA 60.245 43.478 10.27 0.00 41.23 2.83
1637 1935 2.097466 GGGATTGTATGCCTGAAACACG 59.903 50.000 0.00 0.00 37.84 4.49
1643 1949 1.967319 ATGCCTGAAACACGTTCACT 58.033 45.000 0.00 0.00 41.47 3.41
1652 1958 4.988540 TGAAACACGTTCACTAATCTGGAG 59.011 41.667 0.00 0.00 41.47 3.86
1653 1959 4.602340 AACACGTTCACTAATCTGGAGT 57.398 40.909 0.00 0.00 0.00 3.85
1654 1960 5.717078 AACACGTTCACTAATCTGGAGTA 57.283 39.130 0.00 0.00 0.00 2.59
1655 1961 5.312120 ACACGTTCACTAATCTGGAGTAG 57.688 43.478 3.91 3.91 35.33 2.57
1658 1964 6.128063 ACACGTTCACTAATCTGGAGTAGTAC 60.128 42.308 9.82 5.94 39.83 2.73
1668 1974 7.878547 AATCTGGAGTAGTACTTAGTACACC 57.121 40.000 22.48 18.29 41.03 4.16
1676 1982 9.702494 GAGTAGTACTTAGTACACCAATTTTGT 57.298 33.333 22.48 2.67 41.03 2.83
1683 1995 8.981647 ACTTAGTACACCAATTTTGTTAGTACG 58.018 33.333 0.00 0.00 35.17 3.67
1684 1996 9.195411 CTTAGTACACCAATTTTGTTAGTACGA 57.805 33.333 0.00 0.00 35.17 3.43
1685 1997 7.647907 AGTACACCAATTTTGTTAGTACGAG 57.352 36.000 0.00 0.00 35.17 4.18
1699 2011 1.404748 GTACGAGTACCAGGGAAGAGC 59.595 57.143 2.13 0.00 0.00 4.09
1712 2024 4.331168 CAGGGAAGAGCGAATTCTAACTTG 59.669 45.833 3.52 0.00 0.00 3.16
1719 2031 2.711542 CGAATTCTAACTTGGGCAGGT 58.288 47.619 3.52 0.00 0.00 4.00
1733 2045 3.010420 GGGCAGGTTACAAATGAGAGTC 58.990 50.000 0.00 0.00 0.00 3.36
1735 2047 3.686726 GGCAGGTTACAAATGAGAGTCAG 59.313 47.826 0.00 0.00 0.00 3.51
1736 2048 3.686726 GCAGGTTACAAATGAGAGTCAGG 59.313 47.826 0.00 0.00 0.00 3.86
1739 2051 5.765182 CAGGTTACAAATGAGAGTCAGGTTT 59.235 40.000 0.00 0.00 0.00 3.27
1740 2052 6.934645 CAGGTTACAAATGAGAGTCAGGTTTA 59.065 38.462 0.00 0.00 0.00 2.01
1741 2053 7.444183 CAGGTTACAAATGAGAGTCAGGTTTAA 59.556 37.037 0.00 0.00 0.00 1.52
1746 2148 8.974060 ACAAATGAGAGTCAGGTTTAAGTTTA 57.026 30.769 0.00 0.00 0.00 2.01
1759 2161 9.040939 CAGGTTTAAGTTTAACAGAAAATTGGG 57.959 33.333 7.04 0.00 0.00 4.12
1799 2201 3.391965 GCCATGTGCAAACAATGAAAGA 58.608 40.909 0.00 0.00 40.77 2.52
1809 2211 6.822676 TGCAAACAATGAAAGAAAATCAAGGT 59.177 30.769 0.00 0.00 0.00 3.50
1811 2213 7.558137 CAAACAATGAAAGAAAATCAAGGTCG 58.442 34.615 0.00 0.00 0.00 4.79
1815 2217 1.545841 AAGAAAATCAAGGTCGGCCC 58.454 50.000 0.08 0.00 34.57 5.80
1816 2218 0.323451 AGAAAATCAAGGTCGGCCCC 60.323 55.000 0.08 0.00 34.57 5.80
1817 2219 0.323451 GAAAATCAAGGTCGGCCCCT 60.323 55.000 0.08 0.00 35.96 4.79
1818 2220 0.323451 AAAATCAAGGTCGGCCCCTC 60.323 55.000 0.08 0.00 32.13 4.30
1819 2221 1.208165 AAATCAAGGTCGGCCCCTCT 61.208 55.000 0.08 0.00 32.13 3.69
1821 2223 1.208165 ATCAAGGTCGGCCCCTCTTT 61.208 55.000 0.08 0.00 32.13 2.52
1822 2224 1.074951 CAAGGTCGGCCCCTCTTTT 59.925 57.895 0.08 0.00 32.13 2.27
1823 2225 0.960861 CAAGGTCGGCCCCTCTTTTC 60.961 60.000 0.08 0.00 32.13 2.29
1824 2226 1.134438 AAGGTCGGCCCCTCTTTTCT 61.134 55.000 0.08 0.00 32.13 2.52
1826 2228 0.251209 GGTCGGCCCCTCTTTTCTTT 60.251 55.000 0.00 0.00 0.00 2.52
1827 2229 1.166129 GTCGGCCCCTCTTTTCTTTC 58.834 55.000 0.00 0.00 0.00 2.62
1829 2231 1.144093 TCGGCCCCTCTTTTCTTTCAA 59.856 47.619 0.00 0.00 0.00 2.69
1830 2232 1.541588 CGGCCCCTCTTTTCTTTCAAG 59.458 52.381 0.00 0.00 0.00 3.02
1831 2233 2.814097 CGGCCCCTCTTTTCTTTCAAGA 60.814 50.000 0.00 0.00 0.00 3.02
1832 2234 3.230976 GGCCCCTCTTTTCTTTCAAGAA 58.769 45.455 0.00 0.00 42.91 2.52
1847 2249 8.322906 TCTTTCAAGAAAAAGATAGCGAATCA 57.677 30.769 5.12 0.00 39.67 2.57
1848 2250 8.783093 TCTTTCAAGAAAAAGATAGCGAATCAA 58.217 29.630 5.12 0.00 39.67 2.57
1849 2251 8.955061 TTTCAAGAAAAAGATAGCGAATCAAG 57.045 30.769 5.12 0.00 37.03 3.02
1850 2252 7.076842 TCAAGAAAAAGATAGCGAATCAAGG 57.923 36.000 5.12 0.00 37.03 3.61
1851 2253 6.094048 TCAAGAAAAAGATAGCGAATCAAGGG 59.906 38.462 5.12 0.00 37.03 3.95
1852 2254 4.336713 AGAAAAAGATAGCGAATCAAGGGC 59.663 41.667 5.12 0.00 37.03 5.19
1853 2255 3.567478 AAAGATAGCGAATCAAGGGCT 57.433 42.857 5.12 0.00 40.68 5.19
1854 2256 4.689612 AAAGATAGCGAATCAAGGGCTA 57.310 40.909 5.12 0.00 42.82 3.93
1884 2286 8.470002 GGAAGGTAATCAACTGCATTTATTCTT 58.530 33.333 0.00 0.00 0.00 2.52
1891 2293 7.928908 TCAACTGCATTTATTCTTGTGAAAC 57.071 32.000 0.00 0.00 35.63 2.78
1898 2300 8.980610 TGCATTTATTCTTGTGAAACTGAAATG 58.019 29.630 0.00 0.00 38.04 2.32
1960 2362 3.242870 GCGTGCCAGAATTAGGAAGATTG 60.243 47.826 0.70 0.00 0.00 2.67
1965 2367 4.140536 CCAGAATTAGGAAGATTGGAGCC 58.859 47.826 0.00 0.00 0.00 4.70
1968 2370 6.409695 CCAGAATTAGGAAGATTGGAGCCTTA 60.410 42.308 0.00 0.00 32.04 2.69
1969 2371 6.484977 CAGAATTAGGAAGATTGGAGCCTTAC 59.515 42.308 0.00 0.00 32.04 2.34
1970 2372 5.975988 ATTAGGAAGATTGGAGCCTTACA 57.024 39.130 0.00 0.00 32.04 2.41
1972 2374 2.507471 AGGAAGATTGGAGCCTTACAGG 59.493 50.000 0.00 0.00 38.80 4.00
1994 2396 3.059603 GCAGAAATGCATGCAAGGG 57.940 52.632 26.68 13.52 42.11 3.95
1999 2401 0.535335 AAATGCATGCAAGGGCTGAG 59.465 50.000 26.68 0.00 41.91 3.35
2084 2486 8.214721 AGCAAGCTATTTAAGGAATAAGTCAC 57.785 34.615 0.00 0.00 30.07 3.67
2106 2508 7.708322 GTCACATGATTGCTTCTCAGTTCTATA 59.292 37.037 0.00 0.00 0.00 1.31
2110 2512 9.142515 CATGATTGCTTCTCAGTTCTATAGATC 57.857 37.037 2.58 2.82 0.00 2.75
2114 2516 7.283625 TGCTTCTCAGTTCTATAGATCCTTC 57.716 40.000 2.58 0.00 0.00 3.46
2115 2517 6.836007 TGCTTCTCAGTTCTATAGATCCTTCA 59.164 38.462 2.58 0.00 0.00 3.02
2116 2518 7.343057 TGCTTCTCAGTTCTATAGATCCTTCAA 59.657 37.037 2.58 0.00 0.00 2.69
2154 2567 6.259550 ACAACATTCTGAACTATTTGCTCC 57.740 37.500 0.00 0.00 0.00 4.70
2201 2614 1.134877 CATCTGATGCAGTCACTCCGT 60.135 52.381 4.47 0.00 32.61 4.69
2220 2633 2.980476 CGTGATGATAGTACATCGGTGC 59.020 50.000 0.00 0.00 46.49 5.01
2257 2671 9.091784 CATTATTATCCAATCTCTGTCCGTATG 57.908 37.037 0.00 0.00 0.00 2.39
2292 2706 2.579873 AGTCTGCAGCAATGTTTGACT 58.420 42.857 9.47 6.86 0.00 3.41
2332 2746 1.131883 CTGAATCTTTCCAAGCAGCCG 59.868 52.381 0.00 0.00 0.00 5.52
2406 2820 1.913419 GTCCTGTGGAGGTTTATCCCA 59.087 52.381 0.00 0.00 40.76 4.37
2460 2886 2.915604 ACCTGACATGAATCCCTGACTT 59.084 45.455 0.00 0.00 0.00 3.01
2587 3013 5.440610 AGCTTCCCATTGATCGTCTATTTT 58.559 37.500 0.00 0.00 0.00 1.82
2631 3057 5.422970 TGATTTAATCCTCTGCATTTTGGCT 59.577 36.000 2.22 0.00 34.04 4.75
2760 3188 2.909006 TGCTTCTCCAAGAGGAATGTCT 59.091 45.455 0.00 0.00 45.19 3.41
2895 3323 2.284699 CCTCCAAGGGGACGTCCT 60.285 66.667 32.52 12.83 38.64 3.85
2922 3350 6.434340 ACCCAGGTTTCATTTATTCTGAACTC 59.566 38.462 0.00 0.00 32.57 3.01
3058 3489 2.703007 GCCAGGTCAGTTGATCTCCTAT 59.297 50.000 0.00 0.00 32.11 2.57
3114 3545 6.007076 TGTATCAAAATCCCTAAAGCACACA 58.993 36.000 0.00 0.00 0.00 3.72
3118 3549 7.531857 TCAAAATCCCTAAAGCACACAATTA 57.468 32.000 0.00 0.00 0.00 1.40
3142 3573 0.390492 TGCAGGAGCCGTCTATCATG 59.610 55.000 0.00 0.00 41.13 3.07
3213 3644 0.249911 GCAGTCACGAGAGGTTGGTT 60.250 55.000 0.00 0.00 0.00 3.67
3234 3665 5.574443 GGTTGTCTGCATCTTTTTGCTAATC 59.426 40.000 0.00 0.00 43.18 1.75
3259 3690 6.992063 ATGAATTGAGTCTATGTTGTGACC 57.008 37.500 0.00 0.00 34.02 4.02
3319 3754 0.405973 AGGAAACCCTCAAGAAGGCC 59.594 55.000 0.00 0.00 44.71 5.19
3331 3766 4.950050 TCAAGAAGGCCGAAGAGATATTC 58.050 43.478 0.00 0.00 0.00 1.75
3440 3875 2.236395 GCTTCTGGTAAGGCTTCCTACA 59.764 50.000 1.30 0.00 31.13 2.74
3448 3883 7.945664 TCTGGTAAGGCTTCCTACAAAATTAAA 59.054 33.333 1.30 0.00 31.13 1.52
3528 3970 2.613223 GGGTTGCAGACAGTAGGAAGTC 60.613 54.545 0.00 0.00 35.02 3.01
3532 3974 1.618837 GCAGACAGTAGGAAGTCACCA 59.381 52.381 0.00 0.00 37.23 4.17
3535 3977 0.966920 ACAGTAGGAAGTCACCACGG 59.033 55.000 0.00 0.00 0.00 4.94
3571 4014 5.129320 TGTCATCTAGAGTGGTATGCAATGT 59.871 40.000 0.00 0.00 0.00 2.71
3597 4042 6.256104 TCAATTGCATTTTTGGCATTAGATCG 59.744 34.615 0.00 0.00 41.58 3.69
3617 4062 1.478105 GTGAAATGGTTGGATCTGCCC 59.522 52.381 0.00 0.00 34.97 5.36
3696 4143 1.409064 TCAGATCGTTCATTCTCGGGG 59.591 52.381 0.00 0.00 0.00 5.73
3702 4149 1.923395 TTCATTCTCGGGGGCCAGT 60.923 57.895 4.39 0.00 0.00 4.00
3704 4151 1.146263 CATTCTCGGGGGCCAGTAC 59.854 63.158 4.39 0.00 0.00 2.73
3815 4280 1.487482 TGTTTCTCTTGTCGTGCTCG 58.513 50.000 0.81 0.81 38.55 5.03
3830 4295 4.096732 GTGCTCGGCATGAACTAAAAAT 57.903 40.909 0.00 0.00 41.91 1.82
3832 4297 5.821204 GTGCTCGGCATGAACTAAAAATAT 58.179 37.500 0.00 0.00 41.91 1.28
3837 4302 6.954944 TCGGCATGAACTAAAAATATAGCAC 58.045 36.000 0.00 0.00 0.00 4.40
3841 4306 7.645340 GGCATGAACTAAAAATATAGCACTGTG 59.355 37.037 2.76 2.76 0.00 3.66
3857 4322 4.431809 CACTGTGAAATTGCAGAAAACCA 58.568 39.130 0.32 0.00 36.62 3.67
3860 4325 4.431809 TGTGAAATTGCAGAAAACCAGTG 58.568 39.130 0.00 0.00 0.00 3.66
3861 4326 3.803778 GTGAAATTGCAGAAAACCAGTGG 59.196 43.478 7.91 7.91 0.00 4.00
3862 4327 3.181467 TGAAATTGCAGAAAACCAGTGGG 60.181 43.478 15.21 0.00 41.29 4.61
3863 4328 2.380064 ATTGCAGAAAACCAGTGGGA 57.620 45.000 15.21 0.00 38.05 4.37
3864 4329 2.380064 TTGCAGAAAACCAGTGGGAT 57.620 45.000 15.21 0.00 38.05 3.85
3865 4330 3.517296 TTGCAGAAAACCAGTGGGATA 57.483 42.857 15.21 0.00 38.05 2.59
3868 4333 5.186256 TGCAGAAAACCAGTGGGATATTA 57.814 39.130 15.21 0.00 38.05 0.98
3879 4358 6.322201 ACCAGTGGGATATTAAATTTCAGCTG 59.678 38.462 15.21 7.63 38.05 4.24
3901 4380 5.617252 TGCAATGCTCATCATCTGATAAGA 58.383 37.500 6.82 0.00 33.40 2.10
3919 4398 8.675705 TGATAAGAAACAATTGAGACAAGACA 57.324 30.769 13.59 1.63 0.00 3.41
3921 4400 6.382869 AAGAAACAATTGAGACAAGACAGG 57.617 37.500 13.59 0.00 0.00 4.00
4061 4548 2.424246 GTCTGTAGCCTGTAGGAGTGTC 59.576 54.545 1.17 0.00 37.39 3.67
4080 4572 4.745620 GTGTCTCTTCTACCTTGTCAACAC 59.254 45.833 0.00 0.00 0.00 3.32
4131 4676 6.101150 TGCTGGATTAAGTATAGGTCACCATT 59.899 38.462 0.00 0.00 0.00 3.16
4133 4678 7.041098 GCTGGATTAAGTATAGGTCACCATTTG 60.041 40.741 0.00 0.00 0.00 2.32
4134 4679 6.770785 TGGATTAAGTATAGGTCACCATTTGC 59.229 38.462 0.00 0.00 0.00 3.68
4136 4681 8.154856 GGATTAAGTATAGGTCACCATTTGCTA 58.845 37.037 0.00 0.00 0.00 3.49
4140 4685 7.670605 AGTATAGGTCACCATTTGCTACTAA 57.329 36.000 0.00 0.00 0.00 2.24
4141 4686 8.086143 AGTATAGGTCACCATTTGCTACTAAA 57.914 34.615 0.00 0.00 0.00 1.85
4146 4691 8.051901 AGGTCACCATTTGCTACTAAATTTAC 57.948 34.615 0.00 0.00 0.00 2.01
4147 4692 7.888546 AGGTCACCATTTGCTACTAAATTTACT 59.111 33.333 0.00 0.00 0.00 2.24
4148 4693 7.968405 GGTCACCATTTGCTACTAAATTTACTG 59.032 37.037 0.00 0.00 0.00 2.74
4204 4763 4.504461 CACGCACTAAATCAGCCTAAGTAG 59.496 45.833 0.00 0.00 0.00 2.57
4231 4791 0.601311 GCTTGTCGTCCAGCTTCAGT 60.601 55.000 0.00 0.00 0.00 3.41
4235 4795 0.458716 GTCGTCCAGCTTCAGTAGGC 60.459 60.000 0.00 0.00 0.00 3.93
4308 4868 1.153568 CATGTCGTGATGGTCCGCT 60.154 57.895 0.00 0.00 0.00 5.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 6.155136 CCAAAGAGCTCTGAAGGAATTTTTC 58.845 40.000 19.06 0.00 0.00 2.29
29 30 5.600069 ACCAAAGAGCTCTGAAGGAATTTTT 59.400 36.000 27.00 9.59 0.00 1.94
30 31 5.143369 ACCAAAGAGCTCTGAAGGAATTTT 58.857 37.500 27.00 10.23 0.00 1.82
31 32 4.734266 ACCAAAGAGCTCTGAAGGAATTT 58.266 39.130 27.00 10.86 0.00 1.82
32 33 4.379302 ACCAAAGAGCTCTGAAGGAATT 57.621 40.909 27.00 11.51 0.00 2.17
33 34 4.379302 AACCAAAGAGCTCTGAAGGAAT 57.621 40.909 27.00 16.39 0.00 3.01
34 35 3.864789 AACCAAAGAGCTCTGAAGGAA 57.135 42.857 27.00 0.00 0.00 3.36
35 36 3.117888 ACAAACCAAAGAGCTCTGAAGGA 60.118 43.478 27.00 0.00 0.00 3.36
36 37 3.217626 ACAAACCAAAGAGCTCTGAAGG 58.782 45.455 19.06 20.58 0.00 3.46
37 38 4.453819 CCTACAAACCAAAGAGCTCTGAAG 59.546 45.833 19.06 11.19 0.00 3.02
38 39 4.102524 TCCTACAAACCAAAGAGCTCTGAA 59.897 41.667 19.06 0.00 0.00 3.02
39 40 3.646162 TCCTACAAACCAAAGAGCTCTGA 59.354 43.478 19.06 2.19 0.00 3.27
40 41 4.008074 TCCTACAAACCAAAGAGCTCTG 57.992 45.455 19.06 7.57 0.00 3.35
41 42 4.706842 TTCCTACAAACCAAAGAGCTCT 57.293 40.909 11.45 11.45 0.00 4.09
42 43 5.003804 TCATTCCTACAAACCAAAGAGCTC 58.996 41.667 5.27 5.27 0.00 4.09
43 44 4.985538 TCATTCCTACAAACCAAAGAGCT 58.014 39.130 0.00 0.00 0.00 4.09
44 45 5.705609 TTCATTCCTACAAACCAAAGAGC 57.294 39.130 0.00 0.00 0.00 4.09
45 46 7.885297 TGATTTCATTCCTACAAACCAAAGAG 58.115 34.615 0.00 0.00 0.00 2.85
46 47 7.831691 TGATTTCATTCCTACAAACCAAAGA 57.168 32.000 0.00 0.00 0.00 2.52
50 51 8.912988 GGAATATGATTTCATTCCTACAAACCA 58.087 33.333 6.17 0.00 44.56 3.67
75 76 7.310983 GGAGGATAGAAAGAATTCCTCCATAGG 60.311 44.444 25.06 0.00 45.21 2.57
76 77 7.236432 TGGAGGATAGAAAGAATTCCTCCATAG 59.764 40.741 27.59 0.00 36.12 2.23
77 78 7.016661 GTGGAGGATAGAAAGAATTCCTCCATA 59.983 40.741 31.51 15.04 39.12 2.74
78 79 5.913534 TGGAGGATAGAAAGAATTCCTCCAT 59.086 40.000 27.59 4.97 36.12 3.41
79 80 5.131142 GTGGAGGATAGAAAGAATTCCTCCA 59.869 44.000 27.59 27.59 36.12 3.86
80 81 5.131142 TGTGGAGGATAGAAAGAATTCCTCC 59.869 44.000 23.84 23.84 36.12 4.30
81 82 6.240549 TGTGGAGGATAGAAAGAATTCCTC 57.759 41.667 8.92 8.92 36.12 3.71
82 83 6.838401 ATGTGGAGGATAGAAAGAATTCCT 57.162 37.500 0.65 0.00 36.12 3.36
83 84 7.557719 TGAAATGTGGAGGATAGAAAGAATTCC 59.442 37.037 0.65 0.00 36.12 3.01
84 85 8.511604 TGAAATGTGGAGGATAGAAAGAATTC 57.488 34.615 0.00 0.00 35.70 2.17
86 87 9.790344 CTATGAAATGTGGAGGATAGAAAGAAT 57.210 33.333 0.00 0.00 0.00 2.40
87 88 8.213679 CCTATGAAATGTGGAGGATAGAAAGAA 58.786 37.037 0.00 0.00 0.00 2.52
88 89 7.568738 TCCTATGAAATGTGGAGGATAGAAAGA 59.431 37.037 0.00 0.00 31.25 2.52
89 90 7.739825 TCCTATGAAATGTGGAGGATAGAAAG 58.260 38.462 0.00 0.00 31.25 2.62
90 91 7.690454 TCCTATGAAATGTGGAGGATAGAAA 57.310 36.000 0.00 0.00 31.25 2.52
91 92 7.690454 TTCCTATGAAATGTGGAGGATAGAA 57.310 36.000 0.00 0.00 36.22 2.10
92 93 7.690454 TTTCCTATGAAATGTGGAGGATAGA 57.310 36.000 0.00 0.00 36.22 1.98
93 94 8.930846 ATTTTCCTATGAAATGTGGAGGATAG 57.069 34.615 0.00 0.00 40.08 2.08
95 96 9.713684 TTTATTTTCCTATGAAATGTGGAGGAT 57.286 29.630 0.00 0.00 40.08 3.24
96 97 8.966868 GTTTATTTTCCTATGAAATGTGGAGGA 58.033 33.333 0.00 0.00 40.08 3.71
97 98 8.748412 TGTTTATTTTCCTATGAAATGTGGAGG 58.252 33.333 0.00 0.00 40.08 4.30
106 107 9.693739 TCAGGCTAATGTTTATTTTCCTATGAA 57.306 29.630 0.00 0.00 30.50 2.57
107 108 9.693739 TTCAGGCTAATGTTTATTTTCCTATGA 57.306 29.630 0.00 0.00 30.50 2.15
108 109 9.736023 GTTCAGGCTAATGTTTATTTTCCTATG 57.264 33.333 0.00 0.00 30.50 2.23
109 110 9.700831 AGTTCAGGCTAATGTTTATTTTCCTAT 57.299 29.630 0.00 0.00 30.50 2.57
110 111 9.174166 GAGTTCAGGCTAATGTTTATTTTCCTA 57.826 33.333 0.00 0.00 30.50 2.94
111 112 7.669722 TGAGTTCAGGCTAATGTTTATTTTCCT 59.330 33.333 0.00 0.00 31.23 3.36
112 113 7.826690 TGAGTTCAGGCTAATGTTTATTTTCC 58.173 34.615 0.00 0.00 0.00 3.13
113 114 9.860898 ATTGAGTTCAGGCTAATGTTTATTTTC 57.139 29.630 0.00 0.00 0.00 2.29
114 115 9.643693 CATTGAGTTCAGGCTAATGTTTATTTT 57.356 29.630 0.00 0.00 0.00 1.82
115 116 8.253113 CCATTGAGTTCAGGCTAATGTTTATTT 58.747 33.333 5.09 0.00 0.00 1.40
116 117 7.615365 TCCATTGAGTTCAGGCTAATGTTTATT 59.385 33.333 5.09 0.00 0.00 1.40
117 118 7.118723 TCCATTGAGTTCAGGCTAATGTTTAT 58.881 34.615 5.09 0.00 0.00 1.40
118 119 6.480763 TCCATTGAGTTCAGGCTAATGTTTA 58.519 36.000 5.09 0.00 0.00 2.01
119 120 5.324409 TCCATTGAGTTCAGGCTAATGTTT 58.676 37.500 5.09 0.00 0.00 2.83
120 121 4.922206 TCCATTGAGTTCAGGCTAATGTT 58.078 39.130 5.09 0.00 0.00 2.71
121 122 4.574674 TCCATTGAGTTCAGGCTAATGT 57.425 40.909 5.09 0.00 0.00 2.71
122 123 5.902613 TTTCCATTGAGTTCAGGCTAATG 57.097 39.130 0.00 0.00 0.00 1.90
123 124 6.916360 TTTTTCCATTGAGTTCAGGCTAAT 57.084 33.333 0.00 0.00 0.00 1.73
150 151 5.768662 AGATGCCCTTTGATTCACATCATAG 59.231 40.000 13.54 1.71 39.28 2.23
151 152 5.698104 AGATGCCCTTTGATTCACATCATA 58.302 37.500 13.54 0.00 39.28 2.15
152 153 4.543689 AGATGCCCTTTGATTCACATCAT 58.456 39.130 13.54 2.83 39.28 2.45
153 154 3.949754 GAGATGCCCTTTGATTCACATCA 59.050 43.478 13.54 0.00 37.67 3.07
154 155 3.317430 GGAGATGCCCTTTGATTCACATC 59.683 47.826 6.23 6.23 35.31 3.06
155 156 3.053095 AGGAGATGCCCTTTGATTCACAT 60.053 43.478 0.00 0.00 37.37 3.21
156 157 2.309755 AGGAGATGCCCTTTGATTCACA 59.690 45.455 0.00 0.00 37.37 3.58
157 158 3.010200 AGGAGATGCCCTTTGATTCAC 57.990 47.619 0.00 0.00 37.37 3.18
158 159 3.744940 AAGGAGATGCCCTTTGATTCA 57.255 42.857 0.00 0.00 43.68 2.57
166 167 4.050757 AGGAATAGAAAAGGAGATGCCCT 58.949 43.478 0.00 0.00 38.42 5.19
167 168 4.445557 AGGAATAGAAAAGGAGATGCCC 57.554 45.455 0.00 0.00 37.37 5.36
168 169 5.414144 GCATAGGAATAGAAAAGGAGATGCC 59.586 44.000 0.00 0.00 31.89 4.40
169 170 6.000219 TGCATAGGAATAGAAAAGGAGATGC 59.000 40.000 0.00 0.00 37.16 3.91
170 171 9.381033 CTATGCATAGGAATAGAAAAGGAGATG 57.619 37.037 23.70 0.00 34.94 2.90
191 192 4.517832 TGACATGCATCTCAAATCCTATGC 59.482 41.667 1.73 0.00 43.92 3.14
192 193 6.819397 ATGACATGCATCTCAAATCCTATG 57.181 37.500 8.81 0.00 28.85 2.23
193 194 7.504574 TGAAATGACATGCATCTCAAATCCTAT 59.495 33.333 8.81 0.00 31.21 2.57
194 195 6.829811 TGAAATGACATGCATCTCAAATCCTA 59.170 34.615 8.81 0.00 31.21 2.94
195 196 5.655090 TGAAATGACATGCATCTCAAATCCT 59.345 36.000 8.81 0.00 31.21 3.24
196 197 5.898174 TGAAATGACATGCATCTCAAATCC 58.102 37.500 8.81 0.51 31.21 3.01
197 198 8.420374 AAATGAAATGACATGCATCTCAAATC 57.580 30.769 8.81 10.22 37.50 2.17
198 199 7.494625 GGAAATGAAATGACATGCATCTCAAAT 59.505 33.333 8.81 0.98 37.50 2.32
199 200 6.814644 GGAAATGAAATGACATGCATCTCAAA 59.185 34.615 8.81 0.00 37.50 2.69
200 201 6.153851 AGGAAATGAAATGACATGCATCTCAA 59.846 34.615 8.81 0.00 37.50 3.02
201 202 5.655090 AGGAAATGAAATGACATGCATCTCA 59.345 36.000 7.13 7.13 38.28 3.27
202 203 5.977725 CAGGAAATGAAATGACATGCATCTC 59.022 40.000 0.00 0.00 35.78 2.75
203 204 5.421056 ACAGGAAATGAAATGACATGCATCT 59.579 36.000 0.00 0.00 35.78 2.90
204 205 5.518847 CACAGGAAATGAAATGACATGCATC 59.481 40.000 0.00 0.00 35.78 3.91
205 206 5.186215 TCACAGGAAATGAAATGACATGCAT 59.814 36.000 0.00 0.00 39.43 3.96
206 207 4.523558 TCACAGGAAATGAAATGACATGCA 59.476 37.500 0.00 0.00 0.00 3.96
207 208 4.860907 GTCACAGGAAATGAAATGACATGC 59.139 41.667 0.00 0.00 34.28 4.06
208 209 6.263516 AGTCACAGGAAATGAAATGACATG 57.736 37.500 5.11 0.00 35.77 3.21
209 210 6.906157 AAGTCACAGGAAATGAAATGACAT 57.094 33.333 5.11 0.00 35.77 3.06
210 211 6.713762 AAAGTCACAGGAAATGAAATGACA 57.286 33.333 5.11 0.00 35.77 3.58
211 212 7.428826 AGAAAAGTCACAGGAAATGAAATGAC 58.571 34.615 0.00 0.00 34.31 3.06
212 213 7.587037 AGAAAAGTCACAGGAAATGAAATGA 57.413 32.000 0.00 0.00 0.00 2.57
213 214 9.918630 AATAGAAAAGTCACAGGAAATGAAATG 57.081 29.630 0.00 0.00 0.00 2.32
215 216 9.965824 GAAATAGAAAAGTCACAGGAAATGAAA 57.034 29.630 0.00 0.00 0.00 2.69
216 217 9.354673 AGAAATAGAAAAGTCACAGGAAATGAA 57.645 29.630 0.00 0.00 0.00 2.57
217 218 8.924511 AGAAATAGAAAAGTCACAGGAAATGA 57.075 30.769 0.00 0.00 0.00 2.57
247 248 9.762933 CCTCTTTTGGTTCATAAGATTGAAAAA 57.237 29.630 2.32 0.00 37.36 1.94
248 249 7.872483 GCCTCTTTTGGTTCATAAGATTGAAAA 59.128 33.333 2.32 0.00 37.36 2.29
249 250 7.378181 GCCTCTTTTGGTTCATAAGATTGAAA 58.622 34.615 2.32 0.00 37.36 2.69
250 251 6.071391 GGCCTCTTTTGGTTCATAAGATTGAA 60.071 38.462 0.00 0.00 32.77 2.69
251 252 5.418840 GGCCTCTTTTGGTTCATAAGATTGA 59.581 40.000 0.00 0.00 32.77 2.57
252 253 5.420104 AGGCCTCTTTTGGTTCATAAGATTG 59.580 40.000 0.00 0.09 32.77 2.67
253 254 5.583932 AGGCCTCTTTTGGTTCATAAGATT 58.416 37.500 0.00 0.00 32.77 2.40
254 255 5.198602 AGGCCTCTTTTGGTTCATAAGAT 57.801 39.130 0.00 0.00 32.77 2.40
255 256 4.657814 AGGCCTCTTTTGGTTCATAAGA 57.342 40.909 0.00 0.00 32.39 2.10
256 257 8.697507 ATAATAGGCCTCTTTTGGTTCATAAG 57.302 34.615 9.68 0.00 0.00 1.73
257 258 9.131791 GAATAATAGGCCTCTTTTGGTTCATAA 57.868 33.333 9.68 0.00 0.00 1.90
258 259 8.278639 TGAATAATAGGCCTCTTTTGGTTCATA 58.721 33.333 9.68 0.00 0.00 2.15
259 260 7.068716 GTGAATAATAGGCCTCTTTTGGTTCAT 59.931 37.037 9.68 0.00 30.92 2.57
260 261 6.377146 GTGAATAATAGGCCTCTTTTGGTTCA 59.623 38.462 9.68 13.40 0.00 3.18
261 262 6.183360 GGTGAATAATAGGCCTCTTTTGGTTC 60.183 42.308 9.68 11.21 0.00 3.62
262 263 5.656859 GGTGAATAATAGGCCTCTTTTGGTT 59.343 40.000 9.68 2.10 0.00 3.67
263 264 5.044105 AGGTGAATAATAGGCCTCTTTTGGT 60.044 40.000 9.68 0.00 0.00 3.67
264 265 5.300286 CAGGTGAATAATAGGCCTCTTTTGG 59.700 44.000 9.68 0.00 0.00 3.28
265 266 5.300286 CCAGGTGAATAATAGGCCTCTTTTG 59.700 44.000 9.68 0.00 0.00 2.44
266 267 5.193728 TCCAGGTGAATAATAGGCCTCTTTT 59.806 40.000 9.68 4.42 0.00 2.27
267 268 4.726825 TCCAGGTGAATAATAGGCCTCTTT 59.273 41.667 9.68 7.40 0.00 2.52
268 269 4.307259 TCCAGGTGAATAATAGGCCTCTT 58.693 43.478 9.68 9.03 0.00 2.85
269 270 3.941629 TCCAGGTGAATAATAGGCCTCT 58.058 45.455 9.68 0.00 0.00 3.69
270 271 4.706842 TTCCAGGTGAATAATAGGCCTC 57.293 45.455 9.68 0.00 0.00 4.70
271 272 4.141158 CCTTTCCAGGTGAATAATAGGCCT 60.141 45.833 11.78 11.78 35.06 5.19
272 273 4.145052 CCTTTCCAGGTGAATAATAGGCC 58.855 47.826 0.00 0.00 35.06 5.19
273 274 4.145052 CCCTTTCCAGGTGAATAATAGGC 58.855 47.826 0.00 0.00 38.79 3.93
274 275 5.388599 ACCCTTTCCAGGTGAATAATAGG 57.611 43.478 0.00 0.00 38.79 2.57
275 276 6.296803 GGTACCCTTTCCAGGTGAATAATAG 58.703 44.000 0.00 0.00 38.79 1.73
276 277 5.163280 CGGTACCCTTTCCAGGTGAATAATA 60.163 44.000 6.25 0.00 38.79 0.98
277 278 4.384868 CGGTACCCTTTCCAGGTGAATAAT 60.385 45.833 6.25 0.00 38.79 1.28
278 279 3.054948 CGGTACCCTTTCCAGGTGAATAA 60.055 47.826 6.25 0.00 38.79 1.40
279 280 2.502538 CGGTACCCTTTCCAGGTGAATA 59.497 50.000 6.25 0.00 38.79 1.75
280 281 1.280998 CGGTACCCTTTCCAGGTGAAT 59.719 52.381 6.25 0.00 38.79 2.57
281 282 0.688487 CGGTACCCTTTCCAGGTGAA 59.312 55.000 6.25 0.00 38.79 3.18
282 283 0.178926 TCGGTACCCTTTCCAGGTGA 60.179 55.000 6.25 0.00 38.79 4.02
283 284 0.036671 GTCGGTACCCTTTCCAGGTG 60.037 60.000 6.25 0.00 38.79 4.00
284 285 0.178912 AGTCGGTACCCTTTCCAGGT 60.179 55.000 6.25 0.00 38.79 4.00
285 286 0.249398 CAGTCGGTACCCTTTCCAGG 59.751 60.000 6.25 0.00 40.45 4.45
286 287 1.067071 GTCAGTCGGTACCCTTTCCAG 60.067 57.143 6.25 0.00 0.00 3.86
287 288 0.971386 GTCAGTCGGTACCCTTTCCA 59.029 55.000 6.25 0.00 0.00 3.53
288 289 1.204231 GAGTCAGTCGGTACCCTTTCC 59.796 57.143 6.25 0.00 0.00 3.13
289 290 1.135460 CGAGTCAGTCGGTACCCTTTC 60.135 57.143 6.25 0.00 45.58 2.62
290 291 0.886563 CGAGTCAGTCGGTACCCTTT 59.113 55.000 6.25 0.00 45.58 3.11
291 292 2.564471 CGAGTCAGTCGGTACCCTT 58.436 57.895 6.25 0.00 45.58 3.95
292 293 4.315588 CGAGTCAGTCGGTACCCT 57.684 61.111 6.25 0.00 45.58 4.34
300 301 1.063951 CGCGTTACACCGAGTCAGTC 61.064 60.000 0.00 0.00 0.00 3.51
301 302 1.081641 CGCGTTACACCGAGTCAGT 60.082 57.895 0.00 0.00 0.00 3.41
302 303 1.081641 ACGCGTTACACCGAGTCAG 60.082 57.895 5.58 0.00 36.03 3.51
303 304 1.370778 CACGCGTTACACCGAGTCA 60.371 57.895 10.22 0.00 38.83 3.41
304 305 2.713894 GCACGCGTTACACCGAGTC 61.714 63.158 10.22 0.00 38.83 3.36
305 306 2.732094 GCACGCGTTACACCGAGT 60.732 61.111 10.22 0.00 41.58 4.18
306 307 2.430244 AGCACGCGTTACACCGAG 60.430 61.111 10.22 0.00 0.00 4.63
307 308 2.731721 CAGCACGCGTTACACCGA 60.732 61.111 10.22 0.00 0.00 4.69
308 309 4.424430 GCAGCACGCGTTACACCG 62.424 66.667 10.22 0.00 0.00 4.94
309 310 4.084888 GGCAGCACGCGTTACACC 62.085 66.667 10.22 5.57 43.84 4.16
310 311 3.011760 GAGGCAGCACGCGTTACAC 62.012 63.158 10.22 0.00 43.84 2.90
311 312 2.736995 GAGGCAGCACGCGTTACA 60.737 61.111 10.22 0.00 43.84 2.41
312 313 3.838795 CGAGGCAGCACGCGTTAC 61.839 66.667 10.22 4.61 43.84 2.50
313 314 4.351938 ACGAGGCAGCACGCGTTA 62.352 61.111 10.22 0.00 44.21 3.18
318 319 2.664851 TTTCCACGAGGCAGCACG 60.665 61.111 9.21 9.21 33.74 5.34
319 320 1.598130 AGTTTCCACGAGGCAGCAC 60.598 57.895 0.00 0.00 33.74 4.40
320 321 1.597854 CAGTTTCCACGAGGCAGCA 60.598 57.895 0.00 0.00 33.74 4.41
321 322 1.294659 CTCAGTTTCCACGAGGCAGC 61.295 60.000 0.00 0.00 33.74 5.25
322 323 0.318441 TCTCAGTTTCCACGAGGCAG 59.682 55.000 0.00 0.00 33.74 4.85
323 324 0.318441 CTCTCAGTTTCCACGAGGCA 59.682 55.000 0.00 0.00 33.74 4.75
324 325 0.603569 TCTCTCAGTTTCCACGAGGC 59.396 55.000 0.00 0.00 33.74 4.70
325 326 1.203523 CCTCTCTCAGTTTCCACGAGG 59.796 57.143 0.00 0.00 0.00 4.63
326 327 1.889829 ACCTCTCTCAGTTTCCACGAG 59.110 52.381 0.00 0.00 0.00 4.18
327 328 1.887198 GACCTCTCTCAGTTTCCACGA 59.113 52.381 0.00 0.00 0.00 4.35
328 329 1.889829 AGACCTCTCTCAGTTTCCACG 59.110 52.381 0.00 0.00 0.00 4.94
329 330 4.142049 CCATAGACCTCTCTCAGTTTCCAC 60.142 50.000 0.00 0.00 0.00 4.02
330 331 4.026744 CCATAGACCTCTCTCAGTTTCCA 58.973 47.826 0.00 0.00 0.00 3.53
331 332 4.027437 ACCATAGACCTCTCTCAGTTTCC 58.973 47.826 0.00 0.00 0.00 3.13
332 333 5.186021 TGAACCATAGACCTCTCTCAGTTTC 59.814 44.000 0.00 0.00 0.00 2.78
333 334 5.087323 TGAACCATAGACCTCTCTCAGTTT 58.913 41.667 0.00 0.00 0.00 2.66
334 335 4.678256 TGAACCATAGACCTCTCTCAGTT 58.322 43.478 0.00 0.00 0.00 3.16
335 336 4.323569 TGAACCATAGACCTCTCTCAGT 57.676 45.455 0.00 0.00 0.00 3.41
336 337 4.023279 CGATGAACCATAGACCTCTCTCAG 60.023 50.000 0.00 0.00 0.00 3.35
337 338 3.885901 CGATGAACCATAGACCTCTCTCA 59.114 47.826 0.00 0.00 0.00 3.27
338 339 3.254657 CCGATGAACCATAGACCTCTCTC 59.745 52.174 0.00 0.00 0.00 3.20
339 340 3.226777 CCGATGAACCATAGACCTCTCT 58.773 50.000 0.00 0.00 0.00 3.10
340 341 2.297597 CCCGATGAACCATAGACCTCTC 59.702 54.545 0.00 0.00 0.00 3.20
341 342 2.091278 TCCCGATGAACCATAGACCTCT 60.091 50.000 0.00 0.00 0.00 3.69
342 343 2.317040 TCCCGATGAACCATAGACCTC 58.683 52.381 0.00 0.00 0.00 3.85
343 344 2.471815 TCCCGATGAACCATAGACCT 57.528 50.000 0.00 0.00 0.00 3.85
344 345 2.434702 ACTTCCCGATGAACCATAGACC 59.565 50.000 0.00 0.00 0.00 3.85
345 346 3.718815 GACTTCCCGATGAACCATAGAC 58.281 50.000 0.00 0.00 0.00 2.59
346 347 2.361119 CGACTTCCCGATGAACCATAGA 59.639 50.000 0.00 0.00 0.00 1.98
362 363 2.279918 ACGCGCCACTTTCGACTT 60.280 55.556 5.73 0.00 0.00 3.01
364 365 2.717809 GAGACGCGCCACTTTCGAC 61.718 63.158 5.73 0.00 0.00 4.20
378 379 1.740025 GTTATGCAACTGGCCTGAGAC 59.260 52.381 17.64 5.21 43.89 3.36
381 382 0.403655 TGGTTATGCAACTGGCCTGA 59.596 50.000 17.64 0.00 43.89 3.86
400 401 5.939883 TCACTAAATTGTCATAGCAGTGCTT 59.060 36.000 25.23 8.49 40.44 3.91
402 403 5.801350 TCACTAAATTGTCATAGCAGTGC 57.199 39.130 7.13 7.13 33.59 4.40
403 404 6.476706 TCGATCACTAAATTGTCATAGCAGTG 59.523 38.462 0.00 0.00 34.60 3.66
404 405 6.573434 TCGATCACTAAATTGTCATAGCAGT 58.427 36.000 0.00 0.00 0.00 4.40
405 406 7.468922 TTCGATCACTAAATTGTCATAGCAG 57.531 36.000 0.00 0.00 0.00 4.24
406 407 9.541143 TTATTCGATCACTAAATTGTCATAGCA 57.459 29.630 0.00 0.00 0.00 3.49
412 413 7.591426 GGCCATTTATTCGATCACTAAATTGTC 59.409 37.037 0.00 0.00 0.00 3.18
418 419 5.063204 CCAGGCCATTTATTCGATCACTAA 58.937 41.667 5.01 0.00 0.00 2.24
419 420 4.102524 ACCAGGCCATTTATTCGATCACTA 59.897 41.667 5.01 0.00 0.00 2.74
426 427 4.448537 TTTTCACCAGGCCATTTATTCG 57.551 40.909 5.01 0.00 0.00 3.34
437 438 2.368221 TGAAATGGCCTTTTTCACCAGG 59.632 45.455 22.66 0.00 37.97 4.45
441 442 4.248058 CCAGATGAAATGGCCTTTTTCAC 58.752 43.478 26.45 21.04 43.65 3.18
442 443 3.261390 CCCAGATGAAATGGCCTTTTTCA 59.739 43.478 26.24 26.24 44.60 2.69
457 473 5.046087 TCCTGATTACAGATATGCCCAGATG 60.046 44.000 0.00 0.00 46.03 2.90
492 508 7.904022 TCCATTTATTTTGGGGAAGGATTTACT 59.096 33.333 0.00 0.00 34.85 2.24
499 515 6.373005 AAACTCCATTTATTTTGGGGAAGG 57.627 37.500 0.00 0.00 36.81 3.46
503 519 7.454225 TGGTTTAAACTCCATTTATTTTGGGG 58.546 34.615 17.50 0.00 40.81 4.96
505 521 7.877612 AGCTGGTTTAAACTCCATTTATTTTGG 59.122 33.333 17.50 0.00 32.71 3.28
513 529 4.394729 TCGAAGCTGGTTTAAACTCCATT 58.605 39.130 17.50 8.34 33.01 3.16
531 547 3.976490 ATGTCCCCCTCGCCTCGAA 62.976 63.158 0.00 0.00 34.74 3.71
532 548 4.458829 ATGTCCCCCTCGCCTCGA 62.459 66.667 0.00 0.00 0.00 4.04
533 549 4.227134 CATGTCCCCCTCGCCTCG 62.227 72.222 0.00 0.00 0.00 4.63
539 723 1.306997 TGTCCTCCATGTCCCCCTC 60.307 63.158 0.00 0.00 0.00 4.30
544 728 0.911769 TGATGGTGTCCTCCATGTCC 59.088 55.000 5.65 0.00 46.72 4.02
545 729 1.740380 CGTGATGGTGTCCTCCATGTC 60.740 57.143 5.65 0.00 46.72 3.06
546 730 0.250234 CGTGATGGTGTCCTCCATGT 59.750 55.000 5.65 0.00 46.72 3.21
569 753 1.167781 TTTTGGAACGGAGGAACGGC 61.168 55.000 0.00 0.00 38.39 5.68
580 764 5.844396 CGTAGAACTTCAATCGTTTTGGAAC 59.156 40.000 0.00 0.00 0.00 3.62
581 765 5.524646 ACGTAGAACTTCAATCGTTTTGGAA 59.475 36.000 0.00 0.00 0.00 3.53
582 766 5.051816 ACGTAGAACTTCAATCGTTTTGGA 58.948 37.500 0.00 0.00 0.00 3.53
584 768 6.685403 ACAAACGTAGAACTTCAATCGTTTTG 59.315 34.615 19.07 17.06 44.81 2.44
585 769 6.778108 ACAAACGTAGAACTTCAATCGTTTT 58.222 32.000 19.07 12.66 44.81 2.43
586 770 6.257193 AGACAAACGTAGAACTTCAATCGTTT 59.743 34.615 17.39 17.39 46.87 3.60
587 771 5.751990 AGACAAACGTAGAACTTCAATCGTT 59.248 36.000 10.58 10.58 41.91 3.85
588 772 5.287226 AGACAAACGTAGAACTTCAATCGT 58.713 37.500 0.00 0.00 0.00 3.73
590 774 7.808856 ACTCTAGACAAACGTAGAACTTCAATC 59.191 37.037 0.00 0.00 0.00 2.67
591 775 7.659186 ACTCTAGACAAACGTAGAACTTCAAT 58.341 34.615 0.00 0.00 0.00 2.57
592 776 7.035840 ACTCTAGACAAACGTAGAACTTCAA 57.964 36.000 0.00 0.00 0.00 2.69
593 777 6.261603 TGACTCTAGACAAACGTAGAACTTCA 59.738 38.462 0.00 0.00 0.00 3.02
594 778 6.666417 TGACTCTAGACAAACGTAGAACTTC 58.334 40.000 0.00 0.00 0.00 3.01
595 779 6.630444 TGACTCTAGACAAACGTAGAACTT 57.370 37.500 0.00 0.00 0.00 2.66
596 780 6.630444 TTGACTCTAGACAAACGTAGAACT 57.370 37.500 0.00 0.00 0.00 3.01
597 781 7.091555 GTTTGACTCTAGACAAACGTAGAAC 57.908 40.000 18.02 7.04 45.14 3.01
649 833 8.519799 ACATTTCGTGGATCTTACCATATTTT 57.480 30.769 0.00 0.00 42.17 1.82
650 834 9.621629 TTACATTTCGTGGATCTTACCATATTT 57.378 29.630 0.00 0.00 42.17 1.40
654 838 9.052759 GTTATTACATTTCGTGGATCTTACCAT 57.947 33.333 0.00 0.00 42.17 3.55
655 839 8.041919 TGTTATTACATTTCGTGGATCTTACCA 58.958 33.333 0.00 0.00 37.63 3.25
656 840 8.428186 TGTTATTACATTTCGTGGATCTTACC 57.572 34.615 0.00 0.00 0.00 2.85
735 964 4.220602 AGCCCCATTGTAGCAAAGTTTTAG 59.779 41.667 0.00 0.00 0.00 1.85
738 967 2.299867 CAGCCCCATTGTAGCAAAGTTT 59.700 45.455 0.00 0.00 0.00 2.66
739 968 1.895131 CAGCCCCATTGTAGCAAAGTT 59.105 47.619 0.00 0.00 0.00 2.66
740 969 1.549203 CAGCCCCATTGTAGCAAAGT 58.451 50.000 0.00 0.00 0.00 2.66
742 971 1.257055 GCCAGCCCCATTGTAGCAAA 61.257 55.000 0.00 0.00 0.00 3.68
749 978 4.738998 TGGACGCCAGCCCCATTG 62.739 66.667 0.00 0.00 0.00 2.82
750 979 4.740822 GTGGACGCCAGCCCCATT 62.741 66.667 0.00 0.00 32.34 3.16
782 1016 1.602377 CCTCGGTCCTGTGTTTGTTTC 59.398 52.381 0.00 0.00 0.00 2.78
783 1017 1.675552 CCTCGGTCCTGTGTTTGTTT 58.324 50.000 0.00 0.00 0.00 2.83
785 1019 1.227853 GCCTCGGTCCTGTGTTTGT 60.228 57.895 0.00 0.00 0.00 2.83
786 1020 2.317609 CGCCTCGGTCCTGTGTTTG 61.318 63.158 0.00 0.00 0.00 2.93
787 1021 2.030562 CGCCTCGGTCCTGTGTTT 59.969 61.111 0.00 0.00 0.00 2.83
788 1022 2.915659 TCGCCTCGGTCCTGTGTT 60.916 61.111 0.00 0.00 0.00 3.32
888 1122 7.617557 CGTGGAAAAGTTTCGATTTTGAAATT 58.382 30.769 0.14 0.00 39.80 1.82
944 1191 2.771762 ATGGGAGGAGAGCTGGCC 60.772 66.667 0.00 0.00 0.00 5.36
1253 1527 1.064463 CCACATACATTGTCCTGGCCT 60.064 52.381 3.32 0.00 36.00 5.19
1254 1528 1.392589 CCACATACATTGTCCTGGCC 58.607 55.000 0.00 0.00 36.00 5.36
1279 1560 0.535335 CGGAGGAGAACGGGAATCAA 59.465 55.000 0.00 0.00 0.00 2.57
1316 1600 2.317609 CGTCAGCCAACCAACGGAG 61.318 63.158 0.00 0.00 0.00 4.63
1322 1606 2.337879 AAAGCCTCGTCAGCCAACCA 62.338 55.000 0.00 0.00 0.00 3.67
1323 1607 1.172812 AAAAGCCTCGTCAGCCAACC 61.173 55.000 0.00 0.00 0.00 3.77
1347 1633 3.337358 TGAATCTGCAATCTCAAGCGAA 58.663 40.909 0.00 0.00 0.00 4.70
1349 1635 2.539142 GCTGAATCTGCAATCTCAAGCG 60.539 50.000 7.25 0.00 0.00 4.68
1433 1726 3.574354 AAAAAGATGCAAGGGCCAAAA 57.426 38.095 6.18 0.00 40.13 2.44
1472 1768 7.124298 ACATCACTACATACACCAACATCTACT 59.876 37.037 0.00 0.00 0.00 2.57
1485 1781 3.623060 CAGGGTTGCACATCACTACATAC 59.377 47.826 0.00 0.00 0.00 2.39
1518 1814 2.347490 CACCTGACCCAAGTCCCG 59.653 66.667 0.00 0.00 42.81 5.14
1524 1820 2.515398 CTGCACCACCTGACCCAA 59.485 61.111 0.00 0.00 0.00 4.12
1525 1821 4.269523 GCTGCACCACCTGACCCA 62.270 66.667 0.00 0.00 0.00 4.51
1526 1822 3.958860 AGCTGCACCACCTGACCC 61.959 66.667 1.02 0.00 0.00 4.46
1528 1824 1.670406 CTCAGCTGCACCACCTGAC 60.670 63.158 9.47 0.00 32.61 3.51
1529 1825 1.196766 ATCTCAGCTGCACCACCTGA 61.197 55.000 9.47 0.00 34.68 3.86
1564 1862 2.288666 CCATCATCCACCACTAAACCG 58.711 52.381 0.00 0.00 0.00 4.44
1575 1873 2.764010 ACGTACTACAAGCCATCATCCA 59.236 45.455 0.00 0.00 0.00 3.41
1576 1874 3.454371 ACGTACTACAAGCCATCATCC 57.546 47.619 0.00 0.00 0.00 3.51
1579 1877 6.095860 ACATTACTACGTACTACAAGCCATCA 59.904 38.462 0.00 0.00 0.00 3.07
1580 1878 6.501781 ACATTACTACGTACTACAAGCCATC 58.498 40.000 0.00 0.00 0.00 3.51
1581 1879 6.461110 ACATTACTACGTACTACAAGCCAT 57.539 37.500 0.00 0.00 0.00 4.40
1582 1880 5.902613 ACATTACTACGTACTACAAGCCA 57.097 39.130 0.00 0.00 0.00 4.75
1583 1881 7.020914 AGTACATTACTACGTACTACAAGCC 57.979 40.000 0.52 0.00 44.96 4.35
1584 1882 7.044445 GCAAGTACATTACTACGTACTACAAGC 60.044 40.741 2.87 2.81 45.82 4.01
1585 1883 8.180267 AGCAAGTACATTACTACGTACTACAAG 58.820 37.037 2.87 0.00 45.82 3.16
1586 1884 8.044060 AGCAAGTACATTACTACGTACTACAA 57.956 34.615 2.87 0.00 45.82 2.41
1589 1887 7.550551 AGTGAGCAAGTACATTACTACGTACTA 59.449 37.037 2.87 0.00 45.82 1.82
1591 1889 6.468319 CAGTGAGCAAGTACATTACTACGTAC 59.532 42.308 0.00 0.00 38.26 3.67
1592 1890 6.403964 CCAGTGAGCAAGTACATTACTACGTA 60.404 42.308 0.00 0.00 38.26 3.57
1606 1904 2.357009 GCATACAATCCCAGTGAGCAAG 59.643 50.000 0.00 0.00 0.00 4.01
1608 1906 1.408683 GGCATACAATCCCAGTGAGCA 60.409 52.381 0.00 0.00 0.00 4.26
1624 1922 1.967319 AGTGAACGTGTTTCAGGCAT 58.033 45.000 0.00 0.00 45.23 4.40
1627 1925 4.152402 CCAGATTAGTGAACGTGTTTCAGG 59.848 45.833 0.00 0.00 45.23 3.86
1635 1933 6.179040 AGTACTACTCCAGATTAGTGAACGT 58.821 40.000 7.69 0.00 30.78 3.99
1637 1935 9.176460 ACTAAGTACTACTCCAGATTAGTGAAC 57.824 37.037 0.00 0.68 33.91 3.18
1643 1949 8.551440 TGGTGTACTAAGTACTACTCCAGATTA 58.449 37.037 11.51 0.00 39.49 1.75
1658 1964 9.195411 TCGTACTAACAAAATTGGTGTACTAAG 57.805 33.333 15.37 0.88 33.92 2.18
1668 1974 6.091713 CCCTGGTACTCGTACTAACAAAATTG 59.908 42.308 7.12 0.00 36.36 2.32
1676 1982 4.521146 CTCTTCCCTGGTACTCGTACTAA 58.479 47.826 7.12 0.00 36.36 2.24
1682 1994 1.030488 TCGCTCTTCCCTGGTACTCG 61.030 60.000 0.00 0.00 0.00 4.18
1683 1995 1.183549 TTCGCTCTTCCCTGGTACTC 58.816 55.000 0.00 0.00 0.00 2.59
1684 1996 1.867363 ATTCGCTCTTCCCTGGTACT 58.133 50.000 0.00 0.00 0.00 2.73
1685 1997 2.168728 AGAATTCGCTCTTCCCTGGTAC 59.831 50.000 0.00 0.00 0.00 3.34
1699 2011 2.711542 ACCTGCCCAAGTTAGAATTCG 58.288 47.619 0.00 0.00 0.00 3.34
1712 2024 3.010420 GACTCTCATTTGTAACCTGCCC 58.990 50.000 0.00 0.00 0.00 5.36
1719 2031 8.974060 AACTTAAACCTGACTCTCATTTGTAA 57.026 30.769 0.00 0.00 0.00 2.41
1733 2045 9.040939 CCCAATTTTCTGTTAAACTTAAACCTG 57.959 33.333 0.00 0.00 0.00 4.00
1735 2047 9.772973 ATCCCAATTTTCTGTTAAACTTAAACC 57.227 29.630 0.00 0.00 0.00 3.27
1740 2052 9.764363 GAAGAATCCCAATTTTCTGTTAAACTT 57.236 29.630 0.00 0.00 32.65 2.66
1741 2053 8.923270 TGAAGAATCCCAATTTTCTGTTAAACT 58.077 29.630 0.00 0.00 32.65 2.66
1746 2148 6.729690 TGTGAAGAATCCCAATTTTCTGTT 57.270 33.333 0.00 0.00 32.65 3.16
1755 2157 7.344093 TGGCATTAAATATGTGAAGAATCCCAA 59.656 33.333 0.00 0.00 0.00 4.12
1796 2198 1.545841 GGGCCGACCTTGATTTTCTT 58.454 50.000 0.00 0.00 35.85 2.52
1799 2201 0.323451 GAGGGGCCGACCTTGATTTT 60.323 55.000 1.63 0.00 42.10 1.82
1809 2211 0.768622 TGAAAGAAAAGAGGGGCCGA 59.231 50.000 0.00 0.00 0.00 5.54
1811 2213 2.876581 TCTTGAAAGAAAAGAGGGGCC 58.123 47.619 0.00 0.00 30.73 5.80
1821 2223 8.783093 TGATTCGCTATCTTTTTCTTGAAAGAA 58.217 29.630 1.31 1.31 45.68 2.52
1822 2224 8.322906 TGATTCGCTATCTTTTTCTTGAAAGA 57.677 30.769 2.91 2.91 46.36 2.52
1823 2225 8.955061 TTGATTCGCTATCTTTTTCTTGAAAG 57.045 30.769 0.00 0.00 37.85 2.62
1824 2226 8.023128 CCTTGATTCGCTATCTTTTTCTTGAAA 58.977 33.333 0.00 0.00 34.17 2.69
1826 2228 6.094048 CCCTTGATTCGCTATCTTTTTCTTGA 59.906 38.462 0.00 0.00 34.17 3.02
1827 2229 6.261118 CCCTTGATTCGCTATCTTTTTCTTG 58.739 40.000 0.00 0.00 34.17 3.02
1829 2231 4.336713 GCCCTTGATTCGCTATCTTTTTCT 59.663 41.667 0.00 0.00 34.17 2.52
1830 2232 4.336713 AGCCCTTGATTCGCTATCTTTTTC 59.663 41.667 0.00 0.00 34.17 2.29
1831 2233 4.273318 AGCCCTTGATTCGCTATCTTTTT 58.727 39.130 0.00 0.00 34.17 1.94
1832 2234 3.891049 AGCCCTTGATTCGCTATCTTTT 58.109 40.909 0.00 0.00 34.17 2.27
1833 2235 3.567478 AGCCCTTGATTCGCTATCTTT 57.433 42.857 0.00 0.00 34.17 2.52
1834 2236 3.643792 ACTAGCCCTTGATTCGCTATCTT 59.356 43.478 0.00 0.00 34.73 2.40
1835 2237 3.235200 ACTAGCCCTTGATTCGCTATCT 58.765 45.455 0.00 0.00 34.73 1.98
1836 2238 3.669251 ACTAGCCCTTGATTCGCTATC 57.331 47.619 0.00 0.00 34.73 2.08
1837 2239 3.511934 CCTACTAGCCCTTGATTCGCTAT 59.488 47.826 0.00 0.00 34.73 2.97
1838 2240 2.891580 CCTACTAGCCCTTGATTCGCTA 59.108 50.000 0.00 0.00 34.03 4.26
1839 2241 1.689273 CCTACTAGCCCTTGATTCGCT 59.311 52.381 0.00 0.00 36.63 4.93
1840 2242 1.687123 TCCTACTAGCCCTTGATTCGC 59.313 52.381 0.00 0.00 0.00 4.70
1841 2243 3.243907 CCTTCCTACTAGCCCTTGATTCG 60.244 52.174 0.00 0.00 0.00 3.34
1842 2244 3.712218 ACCTTCCTACTAGCCCTTGATTC 59.288 47.826 0.00 0.00 0.00 2.52
1843 2245 3.737263 ACCTTCCTACTAGCCCTTGATT 58.263 45.455 0.00 0.00 0.00 2.57
1844 2246 3.423058 ACCTTCCTACTAGCCCTTGAT 57.577 47.619 0.00 0.00 0.00 2.57
1845 2247 2.942604 ACCTTCCTACTAGCCCTTGA 57.057 50.000 0.00 0.00 0.00 3.02
1846 2248 4.654262 TGATTACCTTCCTACTAGCCCTTG 59.346 45.833 0.00 0.00 0.00 3.61
1847 2249 4.892198 TGATTACCTTCCTACTAGCCCTT 58.108 43.478 0.00 0.00 0.00 3.95
1848 2250 4.554553 TGATTACCTTCCTACTAGCCCT 57.445 45.455 0.00 0.00 0.00 5.19
1849 2251 4.654724 AGTTGATTACCTTCCTACTAGCCC 59.345 45.833 0.00 0.00 0.00 5.19
1850 2252 5.602628 CAGTTGATTACCTTCCTACTAGCC 58.397 45.833 0.00 0.00 0.00 3.93
1851 2253 5.051153 GCAGTTGATTACCTTCCTACTAGC 58.949 45.833 0.00 0.00 0.00 3.42
1852 2254 6.222038 TGCAGTTGATTACCTTCCTACTAG 57.778 41.667 0.00 0.00 0.00 2.57
1853 2255 6.808321 ATGCAGTTGATTACCTTCCTACTA 57.192 37.500 0.00 0.00 0.00 1.82
1854 2256 5.700402 ATGCAGTTGATTACCTTCCTACT 57.300 39.130 0.00 0.00 0.00 2.57
1898 2300 6.813152 ACATAGTTGCTAATTTGGTGAAATGC 59.187 34.615 0.00 0.00 31.83 3.56
1994 2396 2.074547 AATGCACACATTTGCTCAGC 57.925 45.000 0.00 0.00 44.21 4.26
2058 2460 8.678199 GTGACTTATTCCTTAAATAGCTTGCTT 58.322 33.333 0.00 0.00 31.52 3.91
2059 2461 7.829211 TGTGACTTATTCCTTAAATAGCTTGCT 59.171 33.333 0.00 0.00 31.52 3.91
2060 2462 7.985476 TGTGACTTATTCCTTAAATAGCTTGC 58.015 34.615 0.00 0.00 31.52 4.01
2061 2463 9.941664 CATGTGACTTATTCCTTAAATAGCTTG 57.058 33.333 0.00 0.00 31.52 4.01
2069 2471 8.579850 AAGCAATCATGTGACTTATTCCTTAA 57.420 30.769 0.00 0.00 0.00 1.85
2077 2479 5.798132 ACTGAGAAGCAATCATGTGACTTA 58.202 37.500 0.00 0.00 0.00 2.24
2084 2486 9.142515 GATCTATAGAACTGAGAAGCAATCATG 57.857 37.037 6.52 0.00 0.00 3.07
2154 2567 3.785486 TGAACGACTCCAGCTGATAATG 58.215 45.455 17.39 4.43 0.00 1.90
2201 2614 2.621526 ACGCACCGATGTACTATCATCA 59.378 45.455 7.32 0.00 42.82 3.07
2257 2671 5.672321 GCTGCAGACTAGCAAGAAATAACAC 60.672 44.000 20.43 0.00 45.13 3.32
2292 2706 3.822735 CAGCAGAGAATCAAGGGAAAACA 59.177 43.478 0.00 0.00 37.82 2.83
2332 2746 4.217754 TGTAATGTCAACCGTTTCTTGC 57.782 40.909 0.00 0.00 0.00 4.01
2425 2847 9.645128 ATTCATGTCAGGTATTTCCAATGATAA 57.355 29.630 0.00 0.00 39.02 1.75
2473 2899 6.876257 GGCTGATAGATCCGTCTTCAATATTT 59.124 38.462 0.00 0.00 35.87 1.40
2565 2991 5.296780 TCAAAATAGACGATCAATGGGAAGC 59.703 40.000 0.00 0.00 0.00 3.86
2571 2997 8.606602 TGAGAACATCAAAATAGACGATCAATG 58.393 33.333 0.00 0.00 34.02 2.82
2662 3090 2.422093 GGGAGAGGGCATACTTTTGGAG 60.422 54.545 0.00 0.00 0.00 3.86
2760 3188 2.425312 CAACTTTGGTGTTGCTGTGGTA 59.575 45.455 0.00 0.00 40.40 3.25
2895 3323 7.947890 AGTTCAGAATAAATGAAACCTGGGTTA 59.052 33.333 0.00 0.00 38.34 2.85
2922 3350 6.543465 TCATTTAAGGCACACCATATCTTCAG 59.457 38.462 0.00 0.00 39.06 3.02
2932 3360 4.519540 ACACAATCATTTAAGGCACACC 57.480 40.909 0.00 0.00 0.00 4.16
3058 3489 8.846943 TTAGCTGATGTTGAAGATGTAAAGAA 57.153 30.769 0.00 0.00 0.00 2.52
3114 3545 4.718961 AGACGGCTCCTGCAATAATAATT 58.281 39.130 0.00 0.00 41.91 1.40
3118 3549 3.324846 TGATAGACGGCTCCTGCAATAAT 59.675 43.478 0.00 0.00 41.91 1.28
3124 3555 0.948141 GCATGATAGACGGCTCCTGC 60.948 60.000 0.00 0.00 38.76 4.85
3142 3573 0.384353 GAACGCTCCAAACTGTTCGC 60.384 55.000 0.00 0.00 32.38 4.70
3234 3665 7.120285 AGGTCACAACATAGACTCAATTCATTG 59.880 37.037 0.00 0.00 39.10 2.82
3257 3688 7.093201 TGGTAAGTTATTTATCGAGGTTCAGGT 60.093 37.037 0.00 0.00 0.00 4.00
3259 3690 8.888579 ATGGTAAGTTATTTATCGAGGTTCAG 57.111 34.615 0.00 0.00 0.00 3.02
3288 3723 1.886542 GGGTTTCCTGGTTCACATGTC 59.113 52.381 0.00 0.00 0.00 3.06
3319 3754 3.315470 TGTCTGGACCGAATATCTCTTCG 59.685 47.826 0.00 0.00 45.79 3.79
3331 3766 1.066573 AGATCTTTGCTGTCTGGACCG 60.067 52.381 0.00 0.00 0.00 4.79
3397 3832 3.674997 GGAGCACTTTGTGAATCCTACA 58.325 45.455 12.23 0.00 37.70 2.74
3440 3875 8.034804 GCATAGGTCATGGAACTGTTTAATTTT 58.965 33.333 0.00 0.00 34.97 1.82
3448 3883 1.743772 GCGCATAGGTCATGGAACTGT 60.744 52.381 0.30 0.00 34.97 3.55
3501 3943 0.466189 ACTGTCTGCAACCCCAACAG 60.466 55.000 0.00 0.00 42.33 3.16
3528 3970 3.869065 ACATAAGTTATCCACCGTGGTG 58.131 45.455 17.32 12.17 45.02 4.17
3532 3974 5.871396 AGATGACATAAGTTATCCACCGT 57.129 39.130 0.00 0.00 40.56 4.83
3535 3977 8.085296 CCACTCTAGATGACATAAGTTATCCAC 58.915 40.741 0.00 0.00 40.56 4.02
3571 4014 7.201539 CGATCTAATGCCAAAAATGCAATTGAA 60.202 33.333 10.34 0.00 42.92 2.69
3581 4024 6.098679 CCATTTCACGATCTAATGCCAAAAA 58.901 36.000 0.00 0.00 0.00 1.94
3597 4042 1.478105 GGGCAGATCCAACCATTTCAC 59.522 52.381 0.00 0.00 36.21 3.18
3617 4062 4.720530 ACTTGTAAACCGCTTTAGTTCG 57.279 40.909 0.00 0.00 0.00 3.95
3667 4114 7.126726 AGAATGAACGATCTGAAGAAACAAG 57.873 36.000 0.00 0.00 0.00 3.16
3807 4272 0.245266 TTAGTTCATGCCGAGCACGA 59.755 50.000 4.70 0.00 43.04 4.35
3808 4273 1.075542 TTTAGTTCATGCCGAGCACG 58.924 50.000 0.00 0.00 43.04 5.34
3809 4274 3.552604 TTTTTAGTTCATGCCGAGCAC 57.447 42.857 0.50 0.00 43.04 4.40
3815 4280 7.645340 CACAGTGCTATATTTTTAGTTCATGCC 59.355 37.037 0.00 0.00 0.00 4.40
3830 4295 6.816134 TTTCTGCAATTTCACAGTGCTATA 57.184 33.333 0.00 0.00 39.09 1.31
3832 4297 5.280945 GTTTTCTGCAATTTCACAGTGCTA 58.719 37.500 0.00 0.00 39.09 3.49
3837 4302 4.505191 CACTGGTTTTCTGCAATTTCACAG 59.495 41.667 0.00 0.00 35.15 3.66
3841 4306 3.069443 TCCCACTGGTTTTCTGCAATTTC 59.931 43.478 0.00 0.00 0.00 2.17
3846 4311 3.737559 ATATCCCACTGGTTTTCTGCA 57.262 42.857 0.00 0.00 0.00 4.41
3857 4322 5.893255 TGCAGCTGAAATTTAATATCCCACT 59.107 36.000 20.43 0.00 0.00 4.00
3860 4325 6.146673 GCATTGCAGCTGAAATTTAATATCCC 59.853 38.462 17.86 0.00 0.00 3.85
3861 4326 6.927381 AGCATTGCAGCTGAAATTTAATATCC 59.073 34.615 17.86 0.00 44.66 2.59
3862 4327 7.650504 TGAGCATTGCAGCTGAAATTTAATATC 59.349 33.333 17.86 9.57 46.75 1.63
3863 4328 7.494211 TGAGCATTGCAGCTGAAATTTAATAT 58.506 30.769 17.86 0.21 46.75 1.28
3864 4329 6.865411 TGAGCATTGCAGCTGAAATTTAATA 58.135 32.000 17.86 0.95 46.75 0.98
3865 4330 5.726397 TGAGCATTGCAGCTGAAATTTAAT 58.274 33.333 17.86 3.79 46.75 1.40
3868 4333 3.671008 TGAGCATTGCAGCTGAAATTT 57.329 38.095 17.86 8.96 46.75 1.82
3879 4358 6.555812 TTCTTATCAGATGATGAGCATTGC 57.444 37.500 9.19 0.00 42.53 3.56
3901 4380 3.953612 TGCCTGTCTTGTCTCAATTGTTT 59.046 39.130 5.13 0.00 0.00 2.83
3911 4390 3.428045 GCCATGTTTATGCCTGTCTTGTC 60.428 47.826 0.00 0.00 32.79 3.18
3919 4398 2.101917 GCAGATTGCCATGTTTATGCCT 59.898 45.455 0.00 0.00 37.42 4.75
3921 4400 3.167921 TGCAGATTGCCATGTTTATGC 57.832 42.857 0.00 0.00 44.23 3.14
3935 4414 4.322349 GGACTCCGCTATAGAAATGCAGAT 60.322 45.833 3.21 0.00 0.00 2.90
4080 4572 1.608801 GGGGATTTTTGGCTGTGCTTG 60.609 52.381 0.00 0.00 0.00 4.01
4204 4763 4.872664 AGCTGGACGACAAGCTATATTAC 58.127 43.478 15.37 0.00 33.67 1.89
4287 4847 1.819632 GGACCATCACGACATGGCC 60.820 63.158 14.85 13.12 46.71 5.36
4308 4868 3.289062 TCGTCGCCGACCAAGACA 61.289 61.111 12.26 0.00 38.40 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.