Multiple sequence alignment - TraesCS4A01G295800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G295800 chr4A 100.000 2999 0 0 1 2999 596240331 596237333 0.000000e+00 5539.0
1 TraesCS4A01G295800 chr4A 93.017 1203 27 25 839 2015 596214781 596215952 0.000000e+00 1703.0
2 TraesCS4A01G295800 chr4A 96.472 907 9 5 634 1520 596207602 596208505 0.000000e+00 1476.0
3 TraesCS4A01G295800 chr4A 96.362 907 10 6 634 1520 596211249 596212152 0.000000e+00 1471.0
4 TraesCS4A01G295800 chr4A 98.901 637 6 1 1 637 596206904 596207539 0.000000e+00 1136.0
5 TraesCS4A01G295800 chr4A 98.901 637 6 1 1 637 596210551 596211186 0.000000e+00 1136.0
6 TraesCS4A01G295800 chr4A 93.004 729 11 15 813 1520 596204148 596204857 0.000000e+00 1027.0
7 TraesCS4A01G295800 chr4A 99.282 557 4 0 1 557 596214200 596214756 0.000000e+00 1007.0
8 TraesCS4A01G295800 chr4A 91.579 570 30 6 2006 2573 596216317 596216870 0.000000e+00 771.0
9 TraesCS4A01G295800 chr4D 86.439 1261 86 48 764 1972 7409098 7410325 0.000000e+00 1303.0
10 TraesCS4A01G295800 chr4D 94.633 354 17 2 2647 2999 365492146 365492498 5.650000e-152 547.0
11 TraesCS4A01G295800 chr4D 94.633 354 18 1 2647 2999 502365745 502366098 5.650000e-152 547.0
12 TraesCS4A01G295800 chr4D 91.925 161 7 3 477 637 7408723 7408877 1.400000e-53 220.0
13 TraesCS4A01G295800 chr4D 89.831 59 6 0 813 871 7407712 7407770 3.210000e-10 76.8
14 TraesCS4A01G295800 chr4B 83.460 1312 113 57 707 1972 13277027 13278280 0.000000e+00 1125.0
15 TraesCS4A01G295800 chr1B 95.442 351 15 1 2650 2999 173161672 173161322 2.610000e-155 558.0
16 TraesCS4A01G295800 chr7D 94.872 351 16 2 2650 2999 446183327 446182978 5.650000e-152 547.0
17 TraesCS4A01G295800 chr6D 94.872 351 17 1 2650 2999 301816413 301816063 5.650000e-152 547.0
18 TraesCS4A01G295800 chr6D 94.350 354 19 1 2647 2999 374098926 374099279 2.630000e-150 542.0
19 TraesCS4A01G295800 chr6B 94.633 354 18 1 2647 2999 334784410 334784763 5.650000e-152 547.0
20 TraesCS4A01G295800 chr1D 94.633 354 18 1 2647 2999 110493280 110493633 5.650000e-152 547.0
21 TraesCS4A01G295800 chr1D 94.350 354 19 1 2647 2999 203249743 203250096 2.630000e-150 542.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G295800 chr4A 596237333 596240331 2998 True 5539.000000 5539 100.000000 1 2999 1 chr4A.!!$R1 2998
1 TraesCS4A01G295800 chr4A 596204148 596216870 12722 False 1215.875000 1703 95.939750 1 2573 8 chr4A.!!$F1 2572
2 TraesCS4A01G295800 chr4D 7407712 7410325 2613 False 533.266667 1303 89.398333 477 1972 3 chr4D.!!$F3 1495
3 TraesCS4A01G295800 chr4B 13277027 13278280 1253 False 1125.000000 1125 83.460000 707 1972 1 chr4B.!!$F1 1265

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
312 6716 0.948141 AACGAAGCAGCAGAGCAGAC 60.948 55.0 0.0 0.0 36.85 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2241 12526 0.106819 ATCATCCTGTGCCTTGGAGC 60.107 55.0 0.0 0.0 35.63 4.7 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
67 2824 3.040147 TGAAGAGCGAACGAGGATTTT 57.960 42.857 0.00 0.00 0.00 1.82
312 6716 0.948141 AACGAAGCAGCAGAGCAGAC 60.948 55.000 0.00 0.00 36.85 3.51
424 6828 1.442857 CCGCGCTAGTCCATCGATC 60.443 63.158 5.56 0.00 0.00 3.69
1049 10913 2.715005 GCACAGTGCAGCACGAAA 59.285 55.556 21.22 0.00 44.26 3.46
1080 10945 3.244353 GGTTCACTCCGATCATCATCCAT 60.244 47.826 0.00 0.00 0.00 3.41
1081 10946 3.949842 TCACTCCGATCATCATCCATC 57.050 47.619 0.00 0.00 0.00 3.51
1082 10947 2.564504 TCACTCCGATCATCATCCATCC 59.435 50.000 0.00 0.00 0.00 3.51
1083 10948 2.301009 CACTCCGATCATCATCCATCCA 59.699 50.000 0.00 0.00 0.00 3.41
1776 11679 1.893786 CTGCCTCGTTCCTAGCTGT 59.106 57.895 0.00 0.00 0.00 4.40
1849 11752 5.337578 TTGTCACACGATTAGATGGATGA 57.662 39.130 0.00 0.00 0.00 2.92
1850 11753 5.535753 TGTCACACGATTAGATGGATGAT 57.464 39.130 0.00 0.00 0.00 2.45
1851 11754 5.291971 TGTCACACGATTAGATGGATGATG 58.708 41.667 0.00 0.00 0.00 3.07
1852 11755 5.163416 TGTCACACGATTAGATGGATGATGT 60.163 40.000 0.00 0.00 0.00 3.06
1853 11756 5.755375 GTCACACGATTAGATGGATGATGTT 59.245 40.000 0.00 0.00 0.00 2.71
1856 11759 4.386954 CACGATTAGATGGATGATGTTCCG 59.613 45.833 0.00 0.00 38.74 4.30
1857 11760 3.369147 CGATTAGATGGATGATGTTCCGC 59.631 47.826 0.00 0.00 38.74 5.54
1860 11763 2.569059 AGATGGATGATGTTCCGCTTG 58.431 47.619 0.00 0.00 38.74 4.01
1861 11764 1.605710 GATGGATGATGTTCCGCTTGG 59.394 52.381 0.00 0.00 38.74 3.61
1864 11767 2.172505 TGGATGATGTTCCGCTTGGTAT 59.827 45.455 0.00 0.00 38.74 2.73
1881 11792 4.883083 TGGTATCACTCAGTTTGTCACTC 58.117 43.478 0.00 0.00 30.92 3.51
1905 11816 2.703416 TGATCCAGTGCACATCAGAAC 58.297 47.619 21.04 8.90 0.00 3.01
1912 11823 2.158914 AGTGCACATCAGAACTGTGACA 60.159 45.455 21.04 3.59 45.44 3.58
1913 11824 2.032549 GTGCACATCAGAACTGTGACAC 60.033 50.000 13.17 10.56 45.44 3.67
1914 11825 2.158914 TGCACATCAGAACTGTGACACT 60.159 45.455 7.20 0.00 45.44 3.55
1915 11826 2.874701 GCACATCAGAACTGTGACACTT 59.125 45.455 7.20 0.00 45.44 3.16
1916 11827 3.313526 GCACATCAGAACTGTGACACTTT 59.686 43.478 7.20 0.00 45.44 2.66
1917 11828 4.511454 GCACATCAGAACTGTGACACTTTA 59.489 41.667 7.20 0.00 45.44 1.85
1918 11829 5.559035 GCACATCAGAACTGTGACACTTTAC 60.559 44.000 7.20 0.00 45.44 2.01
1948 11861 1.979855 TGGTTATCATCCCCAATGCG 58.020 50.000 0.00 0.00 35.17 4.73
1964 11877 0.950555 TGCGCATCAGAGTTGTCACC 60.951 55.000 5.66 0.00 0.00 4.02
1982 11895 2.813754 CACCTGGTGGTTTGATACAGTG 59.186 50.000 19.23 0.00 46.05 3.66
1983 11896 2.708861 ACCTGGTGGTTTGATACAGTGA 59.291 45.455 0.00 0.00 46.05 3.41
1984 11897 3.330701 ACCTGGTGGTTTGATACAGTGAT 59.669 43.478 0.00 0.00 46.05 3.06
1986 11899 5.191722 ACCTGGTGGTTTGATACAGTGATAT 59.808 40.000 0.00 0.00 46.05 1.63
1992 11905 8.739972 GGTGGTTTGATACAGTGATATCTTTTT 58.260 33.333 3.98 0.00 33.42 1.94
1997 11910 8.648557 TTGATACAGTGATATCTTTTTCGGAG 57.351 34.615 3.98 0.00 33.42 4.63
2002 11915 8.391075 ACAGTGATATCTTTTTCGGAGAAAAA 57.609 30.769 16.60 16.60 45.90 1.94
2045 12329 1.271379 CATGTCATGGCAGTGCAAAGT 59.729 47.619 18.61 0.00 0.00 2.66
2049 12333 2.489329 GTCATGGCAGTGCAAAGTACAT 59.511 45.455 18.61 6.96 0.00 2.29
2053 12337 5.242615 TCATGGCAGTGCAAAGTACATAAAA 59.757 36.000 18.61 0.00 0.00 1.52
2108 12393 6.062095 ACGAGGAATTAATTTCATCCGGAAT 58.938 36.000 9.01 0.00 41.10 3.01
2109 12394 7.221450 ACGAGGAATTAATTTCATCCGGAATA 58.779 34.615 9.01 0.00 41.10 1.75
2110 12395 7.883311 ACGAGGAATTAATTTCATCCGGAATAT 59.117 33.333 9.01 0.00 41.10 1.28
2111 12396 8.730680 CGAGGAATTAATTTCATCCGGAATATT 58.269 33.333 9.01 8.49 41.10 1.28
2130 12415 7.661847 GGAATATTATTTCCTCCAACGTCTCAT 59.338 37.037 0.00 0.00 41.69 2.90
2164 12449 6.090763 TGAATCGTAGTCATGTGCTTTAACAG 59.909 38.462 0.00 0.00 32.52 3.16
2180 12465 8.873215 GCTTTAACAGCTGTATTCTGTATAGA 57.127 34.615 22.01 0.36 46.27 1.98
2204 12489 1.001487 TGACACAAAGCAAATCAGCGG 60.001 47.619 0.00 0.00 40.15 5.52
2217 12502 2.281761 AGCGGGACAAGCCACAAG 60.282 61.111 0.00 0.00 38.95 3.16
2241 12526 2.087646 GAAGCTTAGCAAAGGTGAGGG 58.912 52.381 7.07 0.00 42.53 4.30
2247 12532 1.228552 GCAAAGGTGAGGGCTCCAA 60.229 57.895 0.00 0.00 0.00 3.53
2252 12537 2.360475 GTGAGGGCTCCAAGGCAC 60.360 66.667 2.81 0.00 43.44 5.01
2290 12575 6.586082 CGAAAGGGATTTTGGTAATTTCAGTG 59.414 38.462 0.00 0.00 0.00 3.66
2310 12596 6.091441 TCAGTGGTTTTACATGCAAAACAAAC 59.909 34.615 27.39 23.86 45.88 2.93
2326 12612 4.921470 ACAAACAAGATTCCGTGATACG 57.079 40.909 0.00 0.00 42.11 3.06
2331 12617 1.399714 AGATTCCGTGATACGCCTGA 58.600 50.000 0.00 0.00 40.91 3.86
2336 12622 1.478916 TCCGTGATACGCCTGAATTCA 59.521 47.619 8.12 8.12 40.91 2.57
2371 12657 7.712797 TGAACAGGTTCTTTGGTCTAAATTTC 58.287 34.615 12.86 0.00 40.14 2.17
2434 12720 3.700038 GGAGGAGATCAAAGTCTTACCGA 59.300 47.826 0.00 0.00 0.00 4.69
2435 12721 4.440387 GGAGGAGATCAAAGTCTTACCGAC 60.440 50.000 0.00 0.00 43.17 4.79
2457 12743 3.053077 TCTCTAGAGGAAGAGAGAGGGG 58.947 54.545 19.67 0.00 45.54 4.79
2496 12782 2.422479 CCAGTCATGTTGAATGAGCCTG 59.578 50.000 6.53 0.00 44.38 4.85
2514 12800 4.521639 AGCCTGGAATGTGTATGCATATTG 59.478 41.667 10.16 0.00 36.72 1.90
2537 12823 6.908825 TGGGTATTTTTGTTCTCTTGATTCG 58.091 36.000 0.00 0.00 0.00 3.34
2583 12869 6.991938 ACATGTTGTGTTTATAGCCATTTGT 58.008 32.000 0.00 0.00 38.01 2.83
2584 12870 6.867816 ACATGTTGTGTTTATAGCCATTTGTG 59.132 34.615 0.00 0.00 38.01 3.33
2585 12871 6.641169 TGTTGTGTTTATAGCCATTTGTGA 57.359 33.333 0.00 0.00 0.00 3.58
2586 12872 7.043961 TGTTGTGTTTATAGCCATTTGTGAA 57.956 32.000 0.00 0.00 0.00 3.18
2587 12873 7.492524 TGTTGTGTTTATAGCCATTTGTGAAA 58.507 30.769 0.00 0.00 0.00 2.69
2588 12874 7.436673 TGTTGTGTTTATAGCCATTTGTGAAAC 59.563 33.333 0.00 0.00 37.35 2.78
2589 12875 7.283625 TGTGTTTATAGCCATTTGTGAAACT 57.716 32.000 0.00 0.00 38.04 2.66
2590 12876 8.397575 TGTGTTTATAGCCATTTGTGAAACTA 57.602 30.769 0.00 0.00 38.04 2.24
2591 12877 9.019656 TGTGTTTATAGCCATTTGTGAAACTAT 57.980 29.630 0.00 0.00 38.04 2.12
2592 12878 9.855021 GTGTTTATAGCCATTTGTGAAACTATT 57.145 29.630 0.00 0.00 38.04 1.73
2594 12880 9.221775 GTTTATAGCCATTTGTGAAACTATTCG 57.778 33.333 0.00 0.00 38.46 3.34
2595 12881 8.500753 TTATAGCCATTTGTGAAACTATTCGT 57.499 30.769 0.00 0.00 38.46 3.85
2596 12882 5.046910 AGCCATTTGTGAAACTATTCGTG 57.953 39.130 0.00 0.00 38.46 4.35
2597 12883 4.518970 AGCCATTTGTGAAACTATTCGTGT 59.481 37.500 0.00 0.00 38.46 4.49
2598 12884 5.703592 AGCCATTTGTGAAACTATTCGTGTA 59.296 36.000 0.00 0.00 38.46 2.90
2599 12885 6.374333 AGCCATTTGTGAAACTATTCGTGTAT 59.626 34.615 0.00 0.00 38.46 2.29
2600 12886 7.027161 GCCATTTGTGAAACTATTCGTGTATT 58.973 34.615 0.00 0.00 38.46 1.89
2601 12887 8.178964 GCCATTTGTGAAACTATTCGTGTATTA 58.821 33.333 0.00 0.00 38.46 0.98
2618 12904 9.908152 TCGTGTATTATACAAGTATGAATGAGG 57.092 33.333 15.58 0.00 40.93 3.86
2619 12905 9.140286 CGTGTATTATACAAGTATGAATGAGGG 57.860 37.037 6.64 0.00 40.93 4.30
2620 12906 9.998106 GTGTATTATACAAGTATGAATGAGGGT 57.002 33.333 6.64 0.00 40.93 4.34
2621 12907 9.996554 TGTATTATACAAGTATGAATGAGGGTG 57.003 33.333 2.16 0.00 35.38 4.61
2622 12908 9.436957 GTATTATACAAGTATGAATGAGGGTGG 57.563 37.037 3.06 0.00 0.00 4.61
2623 12909 3.004752 ACAAGTATGAATGAGGGTGGC 57.995 47.619 0.00 0.00 0.00 5.01
2624 12910 2.308570 ACAAGTATGAATGAGGGTGGCA 59.691 45.455 0.00 0.00 0.00 4.92
2625 12911 3.053395 ACAAGTATGAATGAGGGTGGCAT 60.053 43.478 0.00 0.00 0.00 4.40
2626 12912 4.165950 ACAAGTATGAATGAGGGTGGCATA 59.834 41.667 0.00 0.00 0.00 3.14
2627 12913 5.163055 ACAAGTATGAATGAGGGTGGCATAT 60.163 40.000 0.00 0.00 0.00 1.78
2628 12914 6.044287 ACAAGTATGAATGAGGGTGGCATATA 59.956 38.462 0.00 0.00 0.00 0.86
2629 12915 6.898171 AGTATGAATGAGGGTGGCATATAT 57.102 37.500 0.00 0.00 0.00 0.86
2630 12916 6.656902 AGTATGAATGAGGGTGGCATATATG 58.343 40.000 8.45 8.45 0.00 1.78
2639 12925 3.856508 GCATATATGCGCGACGGT 58.143 55.556 21.33 0.00 44.67 4.83
2640 12926 3.024423 GCATATATGCGCGACGGTA 57.976 52.632 21.33 0.00 44.67 4.02
2641 12927 1.556564 GCATATATGCGCGACGGTAT 58.443 50.000 21.33 4.24 44.67 2.73
2642 12928 1.517276 GCATATATGCGCGACGGTATC 59.483 52.381 21.33 0.00 44.67 2.24
2643 12929 2.792749 CATATATGCGCGACGGTATCA 58.207 47.619 12.10 0.00 0.00 2.15
2644 12930 2.993449 TATATGCGCGACGGTATCAA 57.007 45.000 12.10 0.00 0.00 2.57
2645 12931 2.143008 ATATGCGCGACGGTATCAAA 57.857 45.000 12.10 0.00 0.00 2.69
2646 12932 1.923899 TATGCGCGACGGTATCAAAA 58.076 45.000 12.10 0.00 0.00 2.44
2647 12933 0.372334 ATGCGCGACGGTATCAAAAC 59.628 50.000 12.10 0.00 0.00 2.43
2648 12934 0.668096 TGCGCGACGGTATCAAAACT 60.668 50.000 12.10 0.00 0.00 2.66
2649 12935 0.247145 GCGCGACGGTATCAAAACTG 60.247 55.000 12.10 0.00 0.00 3.16
2650 12936 1.342555 CGCGACGGTATCAAAACTGA 58.657 50.000 0.00 0.00 0.00 3.41
2651 12937 1.320555 CGCGACGGTATCAAAACTGAG 59.679 52.381 0.00 0.00 0.00 3.35
2652 12938 2.602878 GCGACGGTATCAAAACTGAGA 58.397 47.619 0.00 0.00 0.00 3.27
2653 12939 2.599082 GCGACGGTATCAAAACTGAGAG 59.401 50.000 0.00 0.00 0.00 3.20
2654 12940 3.179830 CGACGGTATCAAAACTGAGAGG 58.820 50.000 0.00 0.00 0.00 3.69
2655 12941 3.522553 GACGGTATCAAAACTGAGAGGG 58.477 50.000 0.00 0.00 0.00 4.30
2656 12942 2.280628 CGGTATCAAAACTGAGAGGGC 58.719 52.381 0.00 0.00 0.00 5.19
2657 12943 2.644676 GGTATCAAAACTGAGAGGGCC 58.355 52.381 0.00 0.00 0.00 5.80
2658 12944 2.644676 GTATCAAAACTGAGAGGGCCC 58.355 52.381 16.46 16.46 0.00 5.80
2659 12945 1.075601 ATCAAAACTGAGAGGGCCCA 58.924 50.000 27.56 0.70 0.00 5.36
2660 12946 0.401738 TCAAAACTGAGAGGGCCCAG 59.598 55.000 27.56 15.60 36.53 4.45
2661 12947 0.401738 CAAAACTGAGAGGGCCCAGA 59.598 55.000 27.56 2.83 34.65 3.86
2662 12948 0.695347 AAAACTGAGAGGGCCCAGAG 59.305 55.000 27.56 15.85 34.65 3.35
2663 12949 0.178891 AAACTGAGAGGGCCCAGAGA 60.179 55.000 27.56 3.67 34.65 3.10
2664 12950 0.043940 AACTGAGAGGGCCCAGAGAT 59.956 55.000 27.56 0.88 34.65 2.75
2665 12951 0.937441 ACTGAGAGGGCCCAGAGATA 59.063 55.000 27.56 3.75 34.65 1.98
2666 12952 1.337118 CTGAGAGGGCCCAGAGATAC 58.663 60.000 27.56 8.31 32.37 2.24
2667 12953 0.105453 TGAGAGGGCCCAGAGATACC 60.105 60.000 27.56 4.26 0.00 2.73
2668 12954 0.189822 GAGAGGGCCCAGAGATACCT 59.810 60.000 27.56 7.10 0.00 3.08
2669 12955 0.189822 AGAGGGCCCAGAGATACCTC 59.810 60.000 27.56 9.41 46.27 3.85
2681 12967 4.932268 GAGATACCTCTTCGATACTCGG 57.068 50.000 0.00 0.00 37.17 4.63
2682 12968 4.567971 GAGATACCTCTTCGATACTCGGA 58.432 47.826 0.00 0.00 37.17 4.55
2683 12969 4.970711 AGATACCTCTTCGATACTCGGAA 58.029 43.478 0.00 0.00 40.88 4.30
2684 12970 5.562635 AGATACCTCTTCGATACTCGGAAT 58.437 41.667 0.00 0.00 40.88 3.01
2685 12971 3.992260 ACCTCTTCGATACTCGGAATG 57.008 47.619 0.00 0.00 40.88 2.67
2686 12972 3.552875 ACCTCTTCGATACTCGGAATGA 58.447 45.455 0.00 0.00 40.88 2.57
2687 12973 3.315749 ACCTCTTCGATACTCGGAATGAC 59.684 47.826 0.00 0.00 40.88 3.06
2688 12974 3.315470 CCTCTTCGATACTCGGAATGACA 59.685 47.826 0.00 0.00 40.88 3.58
2689 12975 4.202020 CCTCTTCGATACTCGGAATGACAA 60.202 45.833 0.00 0.00 40.88 3.18
2690 12976 5.319140 TCTTCGATACTCGGAATGACAAA 57.681 39.130 0.00 0.00 40.88 2.83
2691 12977 5.902681 TCTTCGATACTCGGAATGACAAAT 58.097 37.500 0.00 0.00 40.88 2.32
2692 12978 5.977725 TCTTCGATACTCGGAATGACAAATC 59.022 40.000 0.00 0.00 40.88 2.17
2693 12979 4.617959 TCGATACTCGGAATGACAAATCC 58.382 43.478 0.00 1.42 40.88 3.01
2694 12980 4.341235 TCGATACTCGGAATGACAAATCCT 59.659 41.667 8.52 0.00 40.88 3.24
2695 12981 5.533528 TCGATACTCGGAATGACAAATCCTA 59.466 40.000 8.52 0.00 40.88 2.94
2696 12982 6.040054 TCGATACTCGGAATGACAAATCCTAA 59.960 38.462 8.52 0.00 40.88 2.69
2697 12983 6.868864 CGATACTCGGAATGACAAATCCTAAT 59.131 38.462 8.52 0.00 36.00 1.73
2698 12984 7.385205 CGATACTCGGAATGACAAATCCTAATT 59.615 37.037 8.52 0.00 36.00 1.40
2699 12985 8.980481 ATACTCGGAATGACAAATCCTAATTT 57.020 30.769 8.52 0.00 35.43 1.82
2700 12986 7.321745 ACTCGGAATGACAAATCCTAATTTC 57.678 36.000 8.52 0.00 32.69 2.17
2701 12987 6.037172 ACTCGGAATGACAAATCCTAATTTCG 59.963 38.462 8.52 0.00 32.69 3.46
2702 12988 6.110033 TCGGAATGACAAATCCTAATTTCGA 58.890 36.000 8.52 0.00 32.69 3.71
2703 12989 6.765989 TCGGAATGACAAATCCTAATTTCGAT 59.234 34.615 8.52 0.00 32.69 3.59
2704 12990 7.042051 TCGGAATGACAAATCCTAATTTCGATC 60.042 37.037 8.52 0.00 32.69 3.69
2705 12991 7.041780 CGGAATGACAAATCCTAATTTCGATCT 60.042 37.037 8.52 0.00 32.69 2.75
2706 12992 9.273016 GGAATGACAAATCCTAATTTCGATCTA 57.727 33.333 3.91 0.00 32.69 1.98
2709 12995 8.087982 TGACAAATCCTAATTTCGATCTATGC 57.912 34.615 0.00 0.00 32.69 3.14
2710 12996 7.173218 TGACAAATCCTAATTTCGATCTATGCC 59.827 37.037 0.00 0.00 32.69 4.40
2711 12997 6.998074 ACAAATCCTAATTTCGATCTATGCCA 59.002 34.615 0.00 0.00 32.69 4.92
2712 12998 7.502226 ACAAATCCTAATTTCGATCTATGCCAA 59.498 33.333 0.00 0.00 32.69 4.52
2713 12999 7.440523 AATCCTAATTTCGATCTATGCCAAC 57.559 36.000 0.00 0.00 0.00 3.77
2714 13000 6.174720 TCCTAATTTCGATCTATGCCAACT 57.825 37.500 0.00 0.00 0.00 3.16
2715 13001 6.591935 TCCTAATTTCGATCTATGCCAACTT 58.408 36.000 0.00 0.00 0.00 2.66
2716 13002 7.732025 TCCTAATTTCGATCTATGCCAACTTA 58.268 34.615 0.00 0.00 0.00 2.24
2717 13003 8.208224 TCCTAATTTCGATCTATGCCAACTTAA 58.792 33.333 0.00 0.00 0.00 1.85
2718 13004 9.003658 CCTAATTTCGATCTATGCCAACTTAAT 57.996 33.333 0.00 0.00 0.00 1.40
2723 13009 8.725405 TTCGATCTATGCCAACTTAATAAACA 57.275 30.769 0.00 0.00 0.00 2.83
2724 13010 8.138365 TCGATCTATGCCAACTTAATAAACAC 57.862 34.615 0.00 0.00 0.00 3.32
2725 13011 7.225931 TCGATCTATGCCAACTTAATAAACACC 59.774 37.037 0.00 0.00 0.00 4.16
2726 13012 7.226720 CGATCTATGCCAACTTAATAAACACCT 59.773 37.037 0.00 0.00 0.00 4.00
2727 13013 8.823220 ATCTATGCCAACTTAATAAACACCTT 57.177 30.769 0.00 0.00 0.00 3.50
2728 13014 8.276252 TCTATGCCAACTTAATAAACACCTTC 57.724 34.615 0.00 0.00 0.00 3.46
2729 13015 5.365403 TGCCAACTTAATAAACACCTTCG 57.635 39.130 0.00 0.00 0.00 3.79
2730 13016 5.064558 TGCCAACTTAATAAACACCTTCGA 58.935 37.500 0.00 0.00 0.00 3.71
2731 13017 5.531659 TGCCAACTTAATAAACACCTTCGAA 59.468 36.000 0.00 0.00 0.00 3.71
2732 13018 6.084277 GCCAACTTAATAAACACCTTCGAAG 58.916 40.000 18.51 18.51 0.00 3.79
2733 13019 6.072893 GCCAACTTAATAAACACCTTCGAAGA 60.073 38.462 26.61 5.55 0.00 2.87
2734 13020 7.361799 GCCAACTTAATAAACACCTTCGAAGAT 60.362 37.037 26.61 6.44 35.04 2.40
2735 13021 9.158233 CCAACTTAATAAACACCTTCGAAGATA 57.842 33.333 26.61 11.00 35.04 1.98
2736 13022 9.968743 CAACTTAATAAACACCTTCGAAGATAC 57.031 33.333 26.61 0.00 35.04 2.24
2737 13023 8.713737 ACTTAATAAACACCTTCGAAGATACC 57.286 34.615 26.61 0.00 35.04 2.73
2738 13024 8.537858 ACTTAATAAACACCTTCGAAGATACCT 58.462 33.333 26.61 10.03 35.04 3.08
2739 13025 8.712285 TTAATAAACACCTTCGAAGATACCTG 57.288 34.615 26.61 14.11 35.04 4.00
2740 13026 4.618920 AAACACCTTCGAAGATACCTGT 57.381 40.909 26.61 14.69 35.04 4.00
2741 13027 5.733620 AAACACCTTCGAAGATACCTGTA 57.266 39.130 26.61 0.00 35.04 2.74
2742 13028 4.985538 ACACCTTCGAAGATACCTGTAG 57.014 45.455 26.61 8.60 35.04 2.74
2743 13029 4.597004 ACACCTTCGAAGATACCTGTAGA 58.403 43.478 26.61 0.00 35.04 2.59
2744 13030 4.641094 ACACCTTCGAAGATACCTGTAGAG 59.359 45.833 26.61 7.36 35.04 2.43
2745 13031 3.633065 ACCTTCGAAGATACCTGTAGAGC 59.367 47.826 26.61 0.00 35.04 4.09
2746 13032 3.632604 CCTTCGAAGATACCTGTAGAGCA 59.367 47.826 26.61 0.00 35.04 4.26
2747 13033 4.279671 CCTTCGAAGATACCTGTAGAGCAT 59.720 45.833 26.61 0.00 35.04 3.79
2748 13034 5.440234 TTCGAAGATACCTGTAGAGCATC 57.560 43.478 0.00 0.00 35.04 3.91
2749 13035 5.133941 TTCGAAGATACCTGTAGAGCATCT 58.866 41.667 0.00 0.00 44.32 2.90
2750 13036 5.594725 TTCGAAGATACCTGTAGAGCATCTT 59.405 40.000 12.15 12.15 38.86 2.40
2751 13037 6.096987 TTCGAAGATACCTGTAGAGCATCTTT 59.903 38.462 13.04 2.50 38.86 2.52
2752 13038 7.284716 TTCGAAGATACCTGTAGAGCATCTTTA 59.715 37.037 13.04 5.84 38.86 1.85
2764 13050 4.712476 GAGCATCTTTATGATCACCCAGT 58.288 43.478 0.00 0.00 45.81 4.00
2765 13051 5.121380 AGCATCTTTATGATCACCCAGTT 57.879 39.130 0.00 0.00 34.84 3.16
2766 13052 6.252599 AGCATCTTTATGATCACCCAGTTA 57.747 37.500 0.00 0.00 34.84 2.24
2767 13053 6.058183 AGCATCTTTATGATCACCCAGTTAC 58.942 40.000 0.00 0.00 34.84 2.50
2768 13054 5.050091 GCATCTTTATGATCACCCAGTTACG 60.050 44.000 0.00 0.00 34.84 3.18
2769 13055 5.670792 TCTTTATGATCACCCAGTTACGT 57.329 39.130 0.00 0.00 0.00 3.57
2770 13056 6.045072 TCTTTATGATCACCCAGTTACGTT 57.955 37.500 0.00 0.00 0.00 3.99
2771 13057 5.872617 TCTTTATGATCACCCAGTTACGTTG 59.127 40.000 0.00 0.00 0.00 4.10
2772 13058 3.695830 ATGATCACCCAGTTACGTTGT 57.304 42.857 0.00 0.00 0.00 3.32
2773 13059 2.761559 TGATCACCCAGTTACGTTGTG 58.238 47.619 0.00 0.00 0.00 3.33
2774 13060 2.365941 TGATCACCCAGTTACGTTGTGA 59.634 45.455 0.00 6.41 39.95 3.58
2775 13061 2.228138 TCACCCAGTTACGTTGTGAC 57.772 50.000 0.00 0.00 31.45 3.67
2776 13062 1.481363 TCACCCAGTTACGTTGTGACA 59.519 47.619 0.00 0.00 31.45 3.58
2777 13063 2.103432 TCACCCAGTTACGTTGTGACAT 59.897 45.455 0.00 0.00 31.45 3.06
2778 13064 2.875933 CACCCAGTTACGTTGTGACATT 59.124 45.455 0.00 0.00 0.00 2.71
2779 13065 3.314080 CACCCAGTTACGTTGTGACATTT 59.686 43.478 0.00 0.00 0.00 2.32
2780 13066 3.314080 ACCCAGTTACGTTGTGACATTTG 59.686 43.478 0.00 0.00 0.00 2.32
2781 13067 3.562141 CCCAGTTACGTTGTGACATTTGA 59.438 43.478 0.00 0.00 0.00 2.69
2782 13068 4.215399 CCCAGTTACGTTGTGACATTTGAT 59.785 41.667 0.00 0.00 0.00 2.57
2783 13069 5.410132 CCCAGTTACGTTGTGACATTTGATA 59.590 40.000 0.00 0.00 0.00 2.15
2784 13070 6.402118 CCCAGTTACGTTGTGACATTTGATAG 60.402 42.308 0.00 0.00 0.00 2.08
2785 13071 6.015504 CAGTTACGTTGTGACATTTGATAGC 58.984 40.000 0.00 0.00 0.00 2.97
2786 13072 5.699001 AGTTACGTTGTGACATTTGATAGCA 59.301 36.000 0.00 0.00 0.00 3.49
2787 13073 4.404507 ACGTTGTGACATTTGATAGCAC 57.595 40.909 0.00 0.00 0.00 4.40
2788 13074 3.812609 ACGTTGTGACATTTGATAGCACA 59.187 39.130 0.00 0.00 37.66 4.57
2789 13075 4.151070 CGTTGTGACATTTGATAGCACAC 58.849 43.478 0.00 0.00 38.98 3.82
2790 13076 4.319405 CGTTGTGACATTTGATAGCACACA 60.319 41.667 0.00 0.00 38.98 3.72
2791 13077 5.518812 GTTGTGACATTTGATAGCACACAA 58.481 37.500 9.29 9.29 41.93 3.33
2792 13078 5.361135 TGTGACATTTGATAGCACACAAG 57.639 39.130 0.00 0.00 34.85 3.16
2793 13079 4.216042 TGTGACATTTGATAGCACACAAGG 59.784 41.667 0.00 0.00 34.85 3.61
2794 13080 3.191162 TGACATTTGATAGCACACAAGGC 59.809 43.478 0.00 0.00 0.00 4.35
2795 13081 3.156293 ACATTTGATAGCACACAAGGCA 58.844 40.909 0.00 0.00 0.00 4.75
2796 13082 3.765511 ACATTTGATAGCACACAAGGCAT 59.234 39.130 0.00 0.00 0.00 4.40
2797 13083 4.221262 ACATTTGATAGCACACAAGGCATT 59.779 37.500 0.00 0.00 0.00 3.56
2798 13084 4.439305 TTTGATAGCACACAAGGCATTC 57.561 40.909 0.00 0.00 0.00 2.67
2799 13085 2.368439 TGATAGCACACAAGGCATTCC 58.632 47.619 0.00 0.00 0.00 3.01
2801 13087 2.113860 TAGCACACAAGGCATTCCTC 57.886 50.000 0.00 0.00 43.40 3.71
2802 13088 0.610232 AGCACACAAGGCATTCCTCC 60.610 55.000 0.00 0.00 43.40 4.30
2803 13089 1.926511 GCACACAAGGCATTCCTCCG 61.927 60.000 0.00 0.00 43.40 4.63
2804 13090 1.002134 ACACAAGGCATTCCTCCGG 60.002 57.895 0.00 0.00 43.40 5.14
2805 13091 1.002134 CACAAGGCATTCCTCCGGT 60.002 57.895 0.00 0.00 43.40 5.28
2806 13092 0.251916 CACAAGGCATTCCTCCGGTA 59.748 55.000 0.00 0.00 43.40 4.02
2807 13093 1.134098 CACAAGGCATTCCTCCGGTAT 60.134 52.381 0.00 0.00 43.40 2.73
2808 13094 1.141053 ACAAGGCATTCCTCCGGTATC 59.859 52.381 0.00 0.00 43.40 2.24
2809 13095 1.417890 CAAGGCATTCCTCCGGTATCT 59.582 52.381 0.00 0.00 43.40 1.98
2810 13096 1.051812 AGGCATTCCTCCGGTATCTG 58.948 55.000 0.00 0.00 38.72 2.90
2811 13097 1.048601 GGCATTCCTCCGGTATCTGA 58.951 55.000 0.00 0.00 0.00 3.27
2812 13098 1.001406 GGCATTCCTCCGGTATCTGAG 59.999 57.143 0.00 0.00 0.00 3.35
2813 13099 1.964223 GCATTCCTCCGGTATCTGAGA 59.036 52.381 0.00 0.00 0.00 3.27
2814 13100 2.029470 GCATTCCTCCGGTATCTGAGAG 60.029 54.545 0.00 0.00 0.00 3.20
2815 13101 3.226777 CATTCCTCCGGTATCTGAGAGT 58.773 50.000 0.00 0.00 0.00 3.24
2816 13102 3.383698 TTCCTCCGGTATCTGAGAGTT 57.616 47.619 0.00 0.00 0.00 3.01
2817 13103 4.515028 TTCCTCCGGTATCTGAGAGTTA 57.485 45.455 0.00 0.00 0.00 2.24
2818 13104 3.818180 TCCTCCGGTATCTGAGAGTTAC 58.182 50.000 0.00 0.00 0.00 2.50
2819 13105 3.201487 TCCTCCGGTATCTGAGAGTTACA 59.799 47.826 0.00 0.00 0.00 2.41
2820 13106 4.141228 TCCTCCGGTATCTGAGAGTTACAT 60.141 45.833 0.00 0.00 0.00 2.29
2821 13107 5.072736 TCCTCCGGTATCTGAGAGTTACATA 59.927 44.000 0.00 0.00 0.00 2.29
2822 13108 5.768662 CCTCCGGTATCTGAGAGTTACATAA 59.231 44.000 0.00 0.00 0.00 1.90
2823 13109 6.434652 CCTCCGGTATCTGAGAGTTACATAAT 59.565 42.308 0.00 0.00 0.00 1.28
2824 13110 7.362229 CCTCCGGTATCTGAGAGTTACATAATC 60.362 44.444 0.00 0.00 0.00 1.75
2825 13111 7.232188 TCCGGTATCTGAGAGTTACATAATCT 58.768 38.462 0.00 0.00 0.00 2.40
2826 13112 7.390996 TCCGGTATCTGAGAGTTACATAATCTC 59.609 40.741 0.00 0.00 39.93 2.75
2827 13113 7.175119 CCGGTATCTGAGAGTTACATAATCTCA 59.825 40.741 5.05 5.05 45.39 3.27
2828 13114 8.735315 CGGTATCTGAGAGTTACATAATCTCAT 58.265 37.037 5.53 0.00 46.13 2.90
2833 13119 8.994170 TCTGAGAGTTACATAATCTCATAGTCG 58.006 37.037 5.53 0.00 46.13 4.18
2834 13120 8.904099 TGAGAGTTACATAATCTCATAGTCGA 57.096 34.615 1.25 0.00 43.36 4.20
2835 13121 9.338622 TGAGAGTTACATAATCTCATAGTCGAA 57.661 33.333 1.25 0.00 43.36 3.71
2836 13122 9.820229 GAGAGTTACATAATCTCATAGTCGAAG 57.180 37.037 0.00 0.00 39.42 3.79
2837 13123 8.788806 AGAGTTACATAATCTCATAGTCGAAGG 58.211 37.037 0.00 0.00 0.00 3.46
2838 13124 8.693120 AGTTACATAATCTCATAGTCGAAGGA 57.307 34.615 0.00 0.00 0.00 3.36
2839 13125 9.132923 AGTTACATAATCTCATAGTCGAAGGAA 57.867 33.333 0.00 0.00 0.00 3.36
2840 13126 9.915629 GTTACATAATCTCATAGTCGAAGGAAT 57.084 33.333 0.00 0.00 0.00 3.01
2849 13135 9.914131 TCTCATAGTCGAAGGAATATGTATTTG 57.086 33.333 10.24 1.05 46.24 2.32
2850 13136 9.914131 CTCATAGTCGAAGGAATATGTATTTGA 57.086 33.333 10.24 0.00 46.24 2.69
2851 13137 9.692749 TCATAGTCGAAGGAATATGTATTTGAC 57.307 33.333 10.24 6.41 46.24 3.18
2852 13138 9.476202 CATAGTCGAAGGAATATGTATTTGACA 57.524 33.333 13.10 0.00 43.03 3.58
2868 13154 9.102757 TGTATTTGACATGAAGAAAGAGATAGC 57.897 33.333 0.00 0.00 31.20 2.97
2869 13155 9.102757 GTATTTGACATGAAGAAAGAGATAGCA 57.897 33.333 0.00 0.00 0.00 3.49
2870 13156 7.984422 TTTGACATGAAGAAAGAGATAGCAA 57.016 32.000 0.00 0.00 0.00 3.91
2871 13157 8.571461 TTTGACATGAAGAAAGAGATAGCAAT 57.429 30.769 0.00 0.00 0.00 3.56
2872 13158 9.671279 TTTGACATGAAGAAAGAGATAGCAATA 57.329 29.630 0.00 0.00 0.00 1.90
2873 13159 9.671279 TTGACATGAAGAAAGAGATAGCAATAA 57.329 29.630 0.00 0.00 0.00 1.40
2874 13160 9.671279 TGACATGAAGAAAGAGATAGCAATAAA 57.329 29.630 0.00 0.00 0.00 1.40
2879 13165 9.725019 TGAAGAAAGAGATAGCAATAAAACTGA 57.275 29.630 0.00 0.00 0.00 3.41
2882 13168 8.660373 AGAAAGAGATAGCAATAAAACTGAACG 58.340 33.333 0.00 0.00 0.00 3.95
2883 13169 8.547967 AAAGAGATAGCAATAAAACTGAACGA 57.452 30.769 0.00 0.00 0.00 3.85
2884 13170 8.723942 AAGAGATAGCAATAAAACTGAACGAT 57.276 30.769 0.00 0.00 0.00 3.73
2885 13171 8.359060 AGAGATAGCAATAAAACTGAACGATC 57.641 34.615 0.00 0.00 0.00 3.69
2886 13172 7.981789 AGAGATAGCAATAAAACTGAACGATCA 59.018 33.333 0.00 0.00 0.00 2.92
2887 13173 8.668510 AGATAGCAATAAAACTGAACGATCAT 57.331 30.769 0.00 0.00 34.37 2.45
2888 13174 9.113838 AGATAGCAATAAAACTGAACGATCATT 57.886 29.630 0.00 0.00 34.37 2.57
2892 13178 7.645340 AGCAATAAAACTGAACGATCATTATGC 59.355 33.333 0.00 5.27 34.37 3.14
2893 13179 7.645340 GCAATAAAACTGAACGATCATTATGCT 59.355 33.333 0.00 0.00 34.37 3.79
2897 13183 5.914085 ACTGAACGATCATTATGCTAAGC 57.086 39.130 0.00 0.00 34.37 3.09
2898 13184 5.605534 ACTGAACGATCATTATGCTAAGCT 58.394 37.500 0.00 0.00 34.37 3.74
2899 13185 6.749139 ACTGAACGATCATTATGCTAAGCTA 58.251 36.000 0.00 0.00 34.37 3.32
2900 13186 7.210174 ACTGAACGATCATTATGCTAAGCTAA 58.790 34.615 0.00 0.00 34.37 3.09
2901 13187 7.169982 ACTGAACGATCATTATGCTAAGCTAAC 59.830 37.037 0.00 0.00 34.37 2.34
2902 13188 6.983890 TGAACGATCATTATGCTAAGCTAACA 59.016 34.615 0.00 0.00 0.00 2.41
2903 13189 7.169813 TGAACGATCATTATGCTAAGCTAACAG 59.830 37.037 0.00 0.00 0.00 3.16
2904 13190 6.749139 ACGATCATTATGCTAAGCTAACAGA 58.251 36.000 0.00 0.00 0.00 3.41
2905 13191 7.382110 ACGATCATTATGCTAAGCTAACAGAT 58.618 34.615 0.00 0.00 0.00 2.90
2906 13192 7.330454 ACGATCATTATGCTAAGCTAACAGATG 59.670 37.037 0.00 0.00 0.00 2.90
2907 13193 7.201504 CGATCATTATGCTAAGCTAACAGATGG 60.202 40.741 0.00 0.00 0.00 3.51
2908 13194 6.233434 TCATTATGCTAAGCTAACAGATGGG 58.767 40.000 0.00 0.00 0.00 4.00
2909 13195 5.630415 TTATGCTAAGCTAACAGATGGGT 57.370 39.130 0.00 0.00 0.00 4.51
2910 13196 3.543680 TGCTAAGCTAACAGATGGGTC 57.456 47.619 0.00 0.00 0.00 4.46
2911 13197 3.107601 TGCTAAGCTAACAGATGGGTCT 58.892 45.455 0.00 0.00 34.14 3.85
2912 13198 3.519510 TGCTAAGCTAACAGATGGGTCTT 59.480 43.478 0.00 0.00 30.42 3.01
2913 13199 3.873952 GCTAAGCTAACAGATGGGTCTTG 59.126 47.826 0.00 0.00 30.42 3.02
2914 13200 4.624125 GCTAAGCTAACAGATGGGTCTTGT 60.624 45.833 0.00 0.00 30.42 3.16
2915 13201 3.618690 AGCTAACAGATGGGTCTTGTC 57.381 47.619 0.00 0.00 30.42 3.18
2916 13202 2.237392 AGCTAACAGATGGGTCTTGTCC 59.763 50.000 0.00 0.00 30.42 4.02
2917 13203 2.027192 GCTAACAGATGGGTCTTGTCCA 60.027 50.000 0.00 0.00 38.82 4.02
2918 13204 3.370953 GCTAACAGATGGGTCTTGTCCAT 60.371 47.826 0.00 0.00 46.73 3.41
2924 13210 2.787473 TGGGTCTTGTCCATCACATC 57.213 50.000 0.00 0.00 33.90 3.06
2925 13211 1.984424 TGGGTCTTGTCCATCACATCA 59.016 47.619 0.00 0.00 33.90 3.07
2926 13212 2.577563 TGGGTCTTGTCCATCACATCAT 59.422 45.455 0.00 0.00 33.90 2.45
2927 13213 3.010472 TGGGTCTTGTCCATCACATCATT 59.990 43.478 0.00 0.00 33.90 2.57
2928 13214 3.629398 GGGTCTTGTCCATCACATCATTC 59.371 47.826 0.00 0.00 33.90 2.67
2929 13215 4.521146 GGTCTTGTCCATCACATCATTCT 58.479 43.478 0.00 0.00 33.90 2.40
2930 13216 4.574013 GGTCTTGTCCATCACATCATTCTC 59.426 45.833 0.00 0.00 33.90 2.87
2931 13217 4.574013 GTCTTGTCCATCACATCATTCTCC 59.426 45.833 0.00 0.00 33.90 3.71
2932 13218 4.472470 TCTTGTCCATCACATCATTCTCCT 59.528 41.667 0.00 0.00 33.90 3.69
2933 13219 5.662657 TCTTGTCCATCACATCATTCTCCTA 59.337 40.000 0.00 0.00 33.90 2.94
2934 13220 5.955961 TGTCCATCACATCATTCTCCTAA 57.044 39.130 0.00 0.00 0.00 2.69
2935 13221 6.505048 TGTCCATCACATCATTCTCCTAAT 57.495 37.500 0.00 0.00 0.00 1.73
2936 13222 6.293698 TGTCCATCACATCATTCTCCTAATG 58.706 40.000 0.00 0.00 0.00 1.90
2937 13223 6.100134 TGTCCATCACATCATTCTCCTAATGA 59.900 38.462 3.13 3.13 40.50 2.57
2938 13224 7.166851 GTCCATCACATCATTCTCCTAATGAT 58.833 38.462 7.28 7.28 45.40 2.45
2946 13232 6.119240 TCATTCTCCTAATGATGTGATCCC 57.881 41.667 0.00 0.00 32.21 3.85
2947 13233 4.607293 TTCTCCTAATGATGTGATCCCG 57.393 45.455 0.00 0.00 0.00 5.14
2948 13234 3.576861 TCTCCTAATGATGTGATCCCGT 58.423 45.455 0.00 0.00 0.00 5.28
2949 13235 3.967326 TCTCCTAATGATGTGATCCCGTT 59.033 43.478 0.00 0.00 0.00 4.44
2950 13236 5.144832 TCTCCTAATGATGTGATCCCGTTA 58.855 41.667 0.00 0.00 0.00 3.18
2951 13237 5.780282 TCTCCTAATGATGTGATCCCGTTAT 59.220 40.000 0.00 0.00 0.00 1.89
2952 13238 6.951778 TCTCCTAATGATGTGATCCCGTTATA 59.048 38.462 0.00 0.00 0.00 0.98
2953 13239 7.453439 TCTCCTAATGATGTGATCCCGTTATAA 59.547 37.037 0.00 0.00 0.00 0.98
2954 13240 7.969004 TCCTAATGATGTGATCCCGTTATAAA 58.031 34.615 0.00 0.00 0.00 1.40
2955 13241 8.602424 TCCTAATGATGTGATCCCGTTATAAAT 58.398 33.333 0.00 0.00 0.00 1.40
2956 13242 8.668353 CCTAATGATGTGATCCCGTTATAAATG 58.332 37.037 0.00 0.00 0.00 2.32
2957 13243 9.435688 CTAATGATGTGATCCCGTTATAAATGA 57.564 33.333 0.00 0.00 0.00 2.57
2958 13244 7.672983 ATGATGTGATCCCGTTATAAATGAC 57.327 36.000 0.00 0.00 0.00 3.06
2959 13245 6.587273 TGATGTGATCCCGTTATAAATGACA 58.413 36.000 0.00 0.00 0.00 3.58
2960 13246 7.051000 TGATGTGATCCCGTTATAAATGACAA 58.949 34.615 0.00 0.00 0.00 3.18
2961 13247 6.671614 TGTGATCCCGTTATAAATGACAAC 57.328 37.500 0.00 0.00 0.00 3.32
2962 13248 6.411376 TGTGATCCCGTTATAAATGACAACT 58.589 36.000 0.00 0.00 0.00 3.16
2963 13249 6.537301 TGTGATCCCGTTATAAATGACAACTC 59.463 38.462 0.00 0.00 0.00 3.01
2964 13250 6.537301 GTGATCCCGTTATAAATGACAACTCA 59.463 38.462 0.00 0.00 0.00 3.41
2965 13251 7.226720 GTGATCCCGTTATAAATGACAACTCAT 59.773 37.037 0.00 0.00 38.94 2.90
2966 13252 6.918892 TCCCGTTATAAATGACAACTCATG 57.081 37.500 0.00 0.00 37.20 3.07
2968 13254 6.882140 TCCCGTTATAAATGACAACTCATGTT 59.118 34.615 0.00 0.00 44.12 2.71
2969 13255 7.065324 TCCCGTTATAAATGACAACTCATGTTC 59.935 37.037 0.00 0.00 44.12 3.18
2970 13256 7.148323 CCCGTTATAAATGACAACTCATGTTCA 60.148 37.037 0.00 0.00 44.12 3.18
2971 13257 8.397906 CCGTTATAAATGACAACTCATGTTCAT 58.602 33.333 0.00 0.00 44.12 2.57
2972 13258 9.213819 CGTTATAAATGACAACTCATGTTCATG 57.786 33.333 6.46 6.46 44.12 3.07
2973 13259 9.507280 GTTATAAATGACAACTCATGTTCATGG 57.493 33.333 12.02 6.40 44.12 3.66
2974 13260 7.707624 ATAAATGACAACTCATGTTCATGGT 57.292 32.000 12.02 6.93 44.12 3.55
2975 13261 6.409524 AAATGACAACTCATGTTCATGGTT 57.590 33.333 12.02 11.51 44.12 3.67
2976 13262 7.523293 AAATGACAACTCATGTTCATGGTTA 57.477 32.000 12.02 1.27 44.12 2.85
2977 13263 6.748333 ATGACAACTCATGTTCATGGTTAG 57.252 37.500 12.02 5.88 44.12 2.34
2978 13264 5.003160 TGACAACTCATGTTCATGGTTAGG 58.997 41.667 12.02 7.50 44.12 2.69
2979 13265 5.221823 TGACAACTCATGTTCATGGTTAGGA 60.222 40.000 12.02 2.16 44.12 2.94
2980 13266 5.630121 ACAACTCATGTTCATGGTTAGGAA 58.370 37.500 12.02 0.00 40.06 3.36
2981 13267 6.068010 ACAACTCATGTTCATGGTTAGGAAA 58.932 36.000 12.02 0.00 40.06 3.13
2982 13268 6.016276 ACAACTCATGTTCATGGTTAGGAAAC 60.016 38.462 12.02 0.00 40.06 2.78
2983 13269 6.570378 CAACTCATGTTCATGGTTAGGAAACC 60.570 42.308 12.02 0.22 43.93 3.27
2984 13270 8.658992 CAACTCATGTTCATGGTTAGGAAACCT 61.659 40.741 12.02 0.00 43.97 3.50
2997 13283 7.754851 GTTAGGAAACCTTAACCATCTTTGA 57.245 36.000 0.00 0.00 34.61 2.69
2998 13284 8.349568 GTTAGGAAACCTTAACCATCTTTGAT 57.650 34.615 0.00 0.00 34.61 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.556287 GTGCCGCGACCTTTCTTG 59.444 61.111 8.23 0.00 0.00 3.02
2 3 2.668550 GGTGCCGCGACCTTTCTT 60.669 61.111 8.23 0.00 32.69 2.52
3 4 4.699522 GGGTGCCGCGACCTTTCT 62.700 66.667 15.71 0.00 36.14 2.52
67 2824 0.320374 GGTCGACACATGTCCAGGAA 59.680 55.000 18.91 0.00 41.86 3.36
312 6716 3.197790 CGGTGAAGGGCATGCTCG 61.198 66.667 18.92 6.75 0.00 5.03
585 6989 1.822990 CTTGGACATGCATGGCTCTTT 59.177 47.619 30.93 8.80 35.67 2.52
873 7384 1.454847 ACCGCCACTGCTTTTCCAA 60.455 52.632 0.00 0.00 34.43 3.53
1042 10906 0.883153 AACCGGGGTTAATTTCGTGC 59.117 50.000 6.32 0.00 36.46 5.34
1776 11679 7.662669 TCACATGATGAGATCAGAAAACAGAAA 59.337 33.333 0.00 0.00 43.53 2.52
1849 11752 2.236146 TGAGTGATACCAAGCGGAACAT 59.764 45.455 0.00 0.00 35.59 2.71
1850 11753 1.621317 TGAGTGATACCAAGCGGAACA 59.379 47.619 0.00 0.00 35.59 3.18
1851 11754 2.271800 CTGAGTGATACCAAGCGGAAC 58.728 52.381 0.00 0.00 35.59 3.62
1852 11755 1.899814 ACTGAGTGATACCAAGCGGAA 59.100 47.619 0.00 0.00 35.59 4.30
1853 11756 1.557099 ACTGAGTGATACCAAGCGGA 58.443 50.000 0.00 0.00 35.59 5.54
1856 11759 4.065088 TGACAAACTGAGTGATACCAAGC 58.935 43.478 0.00 0.00 0.00 4.01
1857 11760 5.300752 AGTGACAAACTGAGTGATACCAAG 58.699 41.667 0.00 0.00 37.88 3.61
1860 11763 4.883083 TGAGTGACAAACTGAGTGATACC 58.117 43.478 0.00 0.00 40.07 2.73
1861 11764 7.171508 TCAAATGAGTGACAAACTGAGTGATAC 59.828 37.037 0.00 0.00 40.07 2.24
1864 11767 5.427378 TCAAATGAGTGACAAACTGAGTGA 58.573 37.500 0.00 0.00 40.07 3.41
1881 11792 3.692593 TCTGATGTGCACTGGATCAAATG 59.307 43.478 19.41 7.57 0.00 2.32
1948 11861 1.271054 ACCAGGTGACAACTCTGATGC 60.271 52.381 0.00 0.00 30.44 3.91
1964 11877 6.586344 AGATATCACTGTATCAAACCACCAG 58.414 40.000 5.32 0.00 34.27 4.00
2010 11923 6.183360 GCCATGACATGACAGTTGATGAATAA 60.183 38.462 17.24 0.00 0.00 1.40
2015 11928 2.750712 TGCCATGACATGACAGTTGATG 59.249 45.455 17.24 0.00 0.00 3.07
2016 11929 3.014623 CTGCCATGACATGACAGTTGAT 58.985 45.455 20.21 0.00 36.22 2.57
2085 12370 6.560253 ATTCCGGATGAAATTAATTCCTCG 57.440 37.500 4.15 2.52 37.22 4.63
2108 12393 5.758296 GCATGAGACGTTGGAGGAAATAATA 59.242 40.000 0.00 0.00 0.00 0.98
2109 12394 4.576463 GCATGAGACGTTGGAGGAAATAAT 59.424 41.667 0.00 0.00 0.00 1.28
2110 12395 3.938963 GCATGAGACGTTGGAGGAAATAA 59.061 43.478 0.00 0.00 0.00 1.40
2111 12396 3.055458 TGCATGAGACGTTGGAGGAAATA 60.055 43.478 0.00 0.00 0.00 1.40
2112 12397 2.290260 TGCATGAGACGTTGGAGGAAAT 60.290 45.455 0.00 0.00 0.00 2.17
2113 12398 1.071542 TGCATGAGACGTTGGAGGAAA 59.928 47.619 0.00 0.00 0.00 3.13
2114 12399 0.684535 TGCATGAGACGTTGGAGGAA 59.315 50.000 0.00 0.00 0.00 3.36
2115 12400 0.247460 CTGCATGAGACGTTGGAGGA 59.753 55.000 0.00 0.00 0.00 3.71
2116 12401 1.364626 GCTGCATGAGACGTTGGAGG 61.365 60.000 8.32 0.00 32.52 4.30
2130 12415 1.135139 GACTACGATTCAGGAGCTGCA 59.865 52.381 8.35 0.00 0.00 4.41
2164 12449 8.084684 TGTGTCATGATCTATACAGAATACAGC 58.915 37.037 0.00 0.00 33.50 4.40
2180 12465 4.491676 GCTGATTTGCTTTGTGTCATGAT 58.508 39.130 0.00 0.00 0.00 2.45
2183 12468 2.352030 CCGCTGATTTGCTTTGTGTCAT 60.352 45.455 0.00 0.00 0.00 3.06
2184 12469 1.001487 CCGCTGATTTGCTTTGTGTCA 60.001 47.619 0.00 0.00 0.00 3.58
2185 12470 1.666888 CCCGCTGATTTGCTTTGTGTC 60.667 52.381 0.00 0.00 0.00 3.67
2204 12489 1.876156 CTTCTGTCTTGTGGCTTGTCC 59.124 52.381 0.00 0.00 0.00 4.02
2217 12502 3.403038 TCACCTTTGCTAAGCTTCTGTC 58.597 45.455 0.00 0.00 0.00 3.51
2241 12526 0.106819 ATCATCCTGTGCCTTGGAGC 60.107 55.000 0.00 0.00 35.63 4.70
2247 12532 2.388735 TCGAGTAATCATCCTGTGCCT 58.611 47.619 0.00 0.00 0.00 4.75
2252 12537 4.672587 TCCCTTTCGAGTAATCATCCTG 57.327 45.455 0.00 0.00 0.00 3.86
2290 12575 7.066374 TCTTGTTTGTTTTGCATGTAAAACC 57.934 32.000 34.49 24.70 45.41 3.27
2299 12585 3.862267 CACGGAATCTTGTTTGTTTTGCA 59.138 39.130 0.00 0.00 0.00 4.08
2310 12596 1.860950 CAGGCGTATCACGGAATCTTG 59.139 52.381 0.44 0.00 42.82 3.02
2331 12617 7.395489 AGAACCTGTTCAAATCTAGCATGAATT 59.605 33.333 12.21 0.00 41.84 2.17
2336 12622 6.071728 CCAAAGAACCTGTTCAAATCTAGCAT 60.072 38.462 12.21 0.00 41.84 3.79
2371 12657 3.503363 CCCACATCCATCCAATTACGATG 59.497 47.826 7.44 7.44 37.46 3.84
2436 12722 3.053077 CCCCTCTCTCTTCCTCTAGAGA 58.947 54.545 21.76 4.61 46.35 3.10
2457 12743 1.739466 TGGCGAGATCACAAAAGATGC 59.261 47.619 0.00 0.00 0.00 3.91
2496 12782 7.466746 AATACCCAATATGCATACACATTCC 57.533 36.000 8.99 0.00 0.00 3.01
2514 12800 6.909909 ACGAATCAAGAGAACAAAAATACCC 58.090 36.000 0.00 0.00 0.00 3.69
2573 12859 5.703592 ACACGAATAGTTTCACAAATGGCTA 59.296 36.000 0.00 0.00 0.00 3.93
2574 12860 4.518970 ACACGAATAGTTTCACAAATGGCT 59.481 37.500 0.00 0.00 0.00 4.75
2575 12861 4.794169 ACACGAATAGTTTCACAAATGGC 58.206 39.130 0.00 0.00 0.00 4.40
2592 12878 9.908152 CCTCATTCATACTTGTATAATACACGA 57.092 33.333 0.00 0.00 38.63 4.35
2593 12879 9.140286 CCCTCATTCATACTTGTATAATACACG 57.860 37.037 0.00 0.00 38.63 4.49
2594 12880 9.998106 ACCCTCATTCATACTTGTATAATACAC 57.002 33.333 0.00 0.00 38.63 2.90
2595 12881 9.996554 CACCCTCATTCATACTTGTATAATACA 57.003 33.333 0.00 0.00 36.79 2.29
2596 12882 9.436957 CCACCCTCATTCATACTTGTATAATAC 57.563 37.037 0.00 0.00 0.00 1.89
2597 12883 8.100791 GCCACCCTCATTCATACTTGTATAATA 58.899 37.037 0.00 0.00 0.00 0.98
2598 12884 6.942576 GCCACCCTCATTCATACTTGTATAAT 59.057 38.462 0.00 0.00 0.00 1.28
2599 12885 6.126623 TGCCACCCTCATTCATACTTGTATAA 60.127 38.462 0.00 0.00 0.00 0.98
2600 12886 5.368230 TGCCACCCTCATTCATACTTGTATA 59.632 40.000 0.00 0.00 0.00 1.47
2601 12887 4.165950 TGCCACCCTCATTCATACTTGTAT 59.834 41.667 0.00 0.00 0.00 2.29
2602 12888 3.521531 TGCCACCCTCATTCATACTTGTA 59.478 43.478 0.00 0.00 0.00 2.41
2603 12889 2.308570 TGCCACCCTCATTCATACTTGT 59.691 45.455 0.00 0.00 0.00 3.16
2604 12890 3.003394 TGCCACCCTCATTCATACTTG 57.997 47.619 0.00 0.00 0.00 3.16
2605 12891 3.959495 ATGCCACCCTCATTCATACTT 57.041 42.857 0.00 0.00 0.00 2.24
2606 12892 6.656902 CATATATGCCACCCTCATTCATACT 58.343 40.000 0.00 0.00 0.00 2.12
2607 12893 6.932356 CATATATGCCACCCTCATTCATAC 57.068 41.667 0.00 0.00 0.00 2.39
2623 12909 2.792749 TGATACCGTCGCGCATATATG 58.207 47.619 8.75 8.45 0.00 1.78
2624 12910 3.497297 TTGATACCGTCGCGCATATAT 57.503 42.857 8.75 0.00 0.00 0.86
2625 12911 2.993449 TTGATACCGTCGCGCATATA 57.007 45.000 8.75 0.00 0.00 0.86
2626 12912 2.143008 TTTGATACCGTCGCGCATAT 57.857 45.000 8.75 0.00 0.00 1.78
2627 12913 1.589320 GTTTTGATACCGTCGCGCATA 59.411 47.619 8.75 0.00 0.00 3.14
2628 12914 0.372334 GTTTTGATACCGTCGCGCAT 59.628 50.000 8.75 0.00 0.00 4.73
2629 12915 0.668096 AGTTTTGATACCGTCGCGCA 60.668 50.000 8.75 0.00 0.00 6.09
2630 12916 0.247145 CAGTTTTGATACCGTCGCGC 60.247 55.000 0.00 0.00 0.00 6.86
2631 12917 1.320555 CTCAGTTTTGATACCGTCGCG 59.679 52.381 0.00 0.00 31.68 5.87
2632 12918 2.599082 CTCTCAGTTTTGATACCGTCGC 59.401 50.000 0.00 0.00 31.68 5.19
2633 12919 3.179830 CCTCTCAGTTTTGATACCGTCG 58.820 50.000 0.00 0.00 31.68 5.12
2634 12920 3.522553 CCCTCTCAGTTTTGATACCGTC 58.477 50.000 0.00 0.00 31.68 4.79
2635 12921 2.354805 GCCCTCTCAGTTTTGATACCGT 60.355 50.000 0.00 0.00 31.68 4.83
2636 12922 2.280628 GCCCTCTCAGTTTTGATACCG 58.719 52.381 0.00 0.00 31.68 4.02
2637 12923 2.644676 GGCCCTCTCAGTTTTGATACC 58.355 52.381 0.00 0.00 31.68 2.73
2638 12924 2.026262 TGGGCCCTCTCAGTTTTGATAC 60.026 50.000 25.70 0.00 31.68 2.24
2639 12925 2.239654 CTGGGCCCTCTCAGTTTTGATA 59.760 50.000 25.70 0.00 31.68 2.15
2640 12926 1.005215 CTGGGCCCTCTCAGTTTTGAT 59.995 52.381 25.70 0.00 31.68 2.57
2641 12927 0.401738 CTGGGCCCTCTCAGTTTTGA 59.598 55.000 25.70 0.00 0.00 2.69
2642 12928 0.401738 TCTGGGCCCTCTCAGTTTTG 59.598 55.000 25.70 0.29 33.13 2.44
2643 12929 0.695347 CTCTGGGCCCTCTCAGTTTT 59.305 55.000 25.70 0.00 33.13 2.43
2644 12930 0.178891 TCTCTGGGCCCTCTCAGTTT 60.179 55.000 25.70 0.00 33.13 2.66
2645 12931 0.043940 ATCTCTGGGCCCTCTCAGTT 59.956 55.000 25.70 5.52 33.13 3.16
2646 12932 0.937441 TATCTCTGGGCCCTCTCAGT 59.063 55.000 25.70 7.36 33.13 3.41
2647 12933 1.337118 GTATCTCTGGGCCCTCTCAG 58.663 60.000 25.70 12.46 0.00 3.35
2648 12934 0.105453 GGTATCTCTGGGCCCTCTCA 60.105 60.000 25.70 4.75 0.00 3.27
2649 12935 0.189822 AGGTATCTCTGGGCCCTCTC 59.810 60.000 25.70 6.25 0.00 3.20
2650 12936 0.189822 GAGGTATCTCTGGGCCCTCT 59.810 60.000 25.70 7.22 38.90 3.69
2651 12937 2.753319 GAGGTATCTCTGGGCCCTC 58.247 63.158 25.70 4.48 37.07 4.30
2673 12959 8.608844 AATTAGGATTTGTCATTCCGAGTATC 57.391 34.615 0.00 0.00 37.10 2.24
2674 12960 8.980481 AAATTAGGATTTGTCATTCCGAGTAT 57.020 30.769 0.00 0.00 37.10 2.12
2675 12961 7.223971 CGAAATTAGGATTTGTCATTCCGAGTA 59.776 37.037 0.00 0.00 35.65 2.59
2676 12962 6.037172 CGAAATTAGGATTTGTCATTCCGAGT 59.963 38.462 0.00 0.00 35.65 4.18
2677 12963 6.257849 TCGAAATTAGGATTTGTCATTCCGAG 59.742 38.462 0.00 0.00 35.65 4.63
2678 12964 6.110033 TCGAAATTAGGATTTGTCATTCCGA 58.890 36.000 0.00 0.00 35.65 4.55
2679 12965 6.358118 TCGAAATTAGGATTTGTCATTCCG 57.642 37.500 0.00 0.00 35.65 4.30
2680 12966 8.159344 AGATCGAAATTAGGATTTGTCATTCC 57.841 34.615 0.00 0.00 35.65 3.01
2683 12969 8.725148 GCATAGATCGAAATTAGGATTTGTCAT 58.275 33.333 0.00 0.00 35.65 3.06
2684 12970 7.173218 GGCATAGATCGAAATTAGGATTTGTCA 59.827 37.037 0.00 0.00 35.65 3.58
2685 12971 7.173218 TGGCATAGATCGAAATTAGGATTTGTC 59.827 37.037 0.00 0.00 35.65 3.18
2686 12972 6.998074 TGGCATAGATCGAAATTAGGATTTGT 59.002 34.615 0.00 0.00 35.65 2.83
2687 12973 7.439157 TGGCATAGATCGAAATTAGGATTTG 57.561 36.000 0.00 0.00 35.65 2.32
2688 12974 7.721399 AGTTGGCATAGATCGAAATTAGGATTT 59.279 33.333 0.00 0.00 38.16 2.17
2689 12975 7.227156 AGTTGGCATAGATCGAAATTAGGATT 58.773 34.615 0.00 0.00 0.00 3.01
2690 12976 6.773638 AGTTGGCATAGATCGAAATTAGGAT 58.226 36.000 0.00 0.00 0.00 3.24
2691 12977 6.174720 AGTTGGCATAGATCGAAATTAGGA 57.825 37.500 0.00 0.00 0.00 2.94
2692 12978 6.867662 AAGTTGGCATAGATCGAAATTAGG 57.132 37.500 0.00 0.00 0.00 2.69
2697 12983 9.168451 TGTTTATTAAGTTGGCATAGATCGAAA 57.832 29.630 0.00 0.00 0.00 3.46
2698 12984 8.609176 GTGTTTATTAAGTTGGCATAGATCGAA 58.391 33.333 0.00 0.00 0.00 3.71
2699 12985 7.225931 GGTGTTTATTAAGTTGGCATAGATCGA 59.774 37.037 0.00 0.00 0.00 3.59
2700 12986 7.226720 AGGTGTTTATTAAGTTGGCATAGATCG 59.773 37.037 0.00 0.00 0.00 3.69
2701 12987 8.451908 AGGTGTTTATTAAGTTGGCATAGATC 57.548 34.615 0.00 0.00 0.00 2.75
2702 12988 8.823220 AAGGTGTTTATTAAGTTGGCATAGAT 57.177 30.769 0.00 0.00 0.00 1.98
2703 12989 7.065324 CGAAGGTGTTTATTAAGTTGGCATAGA 59.935 37.037 0.00 0.00 0.00 1.98
2704 12990 7.065324 TCGAAGGTGTTTATTAAGTTGGCATAG 59.935 37.037 0.00 0.00 0.00 2.23
2705 12991 6.879993 TCGAAGGTGTTTATTAAGTTGGCATA 59.120 34.615 0.00 0.00 0.00 3.14
2706 12992 5.708230 TCGAAGGTGTTTATTAAGTTGGCAT 59.292 36.000 0.00 0.00 0.00 4.40
2707 12993 5.064558 TCGAAGGTGTTTATTAAGTTGGCA 58.935 37.500 0.00 0.00 0.00 4.92
2708 12994 5.616488 TCGAAGGTGTTTATTAAGTTGGC 57.384 39.130 0.00 0.00 0.00 4.52
2709 12995 7.429636 TCTTCGAAGGTGTTTATTAAGTTGG 57.570 36.000 24.37 0.00 0.00 3.77
2710 12996 9.968743 GTATCTTCGAAGGTGTTTATTAAGTTG 57.031 33.333 24.37 0.00 0.00 3.16
2711 12997 9.159364 GGTATCTTCGAAGGTGTTTATTAAGTT 57.841 33.333 24.37 0.00 0.00 2.66
2712 12998 8.537858 AGGTATCTTCGAAGGTGTTTATTAAGT 58.462 33.333 24.37 0.00 0.00 2.24
2713 12999 8.818057 CAGGTATCTTCGAAGGTGTTTATTAAG 58.182 37.037 24.37 0.00 0.00 1.85
2714 13000 8.316214 ACAGGTATCTTCGAAGGTGTTTATTAA 58.684 33.333 24.37 1.81 0.00 1.40
2715 13001 7.844009 ACAGGTATCTTCGAAGGTGTTTATTA 58.156 34.615 24.37 2.57 0.00 0.98
2716 13002 6.708285 ACAGGTATCTTCGAAGGTGTTTATT 58.292 36.000 24.37 0.22 0.00 1.40
2717 13003 6.295719 ACAGGTATCTTCGAAGGTGTTTAT 57.704 37.500 24.37 11.99 0.00 1.40
2718 13004 5.733620 ACAGGTATCTTCGAAGGTGTTTA 57.266 39.130 24.37 4.86 0.00 2.01
2719 13005 4.618920 ACAGGTATCTTCGAAGGTGTTT 57.381 40.909 24.37 5.05 0.00 2.83
2720 13006 5.014858 TCTACAGGTATCTTCGAAGGTGTT 58.985 41.667 24.37 10.07 0.00 3.32
2721 13007 4.597004 TCTACAGGTATCTTCGAAGGTGT 58.403 43.478 24.37 19.54 0.00 4.16
2722 13008 4.498345 GCTCTACAGGTATCTTCGAAGGTG 60.498 50.000 24.37 15.52 0.00 4.00
2723 13009 3.633065 GCTCTACAGGTATCTTCGAAGGT 59.367 47.826 24.37 20.61 0.00 3.50
2724 13010 3.632604 TGCTCTACAGGTATCTTCGAAGG 59.367 47.826 24.37 10.03 0.00 3.46
2725 13011 4.902443 TGCTCTACAGGTATCTTCGAAG 57.098 45.455 19.35 19.35 0.00 3.79
2726 13012 5.133941 AGATGCTCTACAGGTATCTTCGAA 58.866 41.667 0.00 0.00 33.56 3.71
2727 13013 4.720046 AGATGCTCTACAGGTATCTTCGA 58.280 43.478 0.00 0.00 33.56 3.71
2728 13014 5.446143 AAGATGCTCTACAGGTATCTTCG 57.554 43.478 0.00 0.00 40.32 3.79
2729 13015 8.580720 TCATAAAGATGCTCTACAGGTATCTTC 58.419 37.037 7.30 0.00 42.30 2.87
2730 13016 8.484214 TCATAAAGATGCTCTACAGGTATCTT 57.516 34.615 0.00 0.00 43.97 2.40
2731 13017 8.663209 ATCATAAAGATGCTCTACAGGTATCT 57.337 34.615 0.00 0.00 37.65 1.98
2732 13018 8.526978 TGATCATAAAGATGCTCTACAGGTATC 58.473 37.037 0.00 0.00 37.00 2.24
2733 13019 8.310382 GTGATCATAAAGATGCTCTACAGGTAT 58.690 37.037 0.00 0.00 37.00 2.73
2734 13020 7.255977 GGTGATCATAAAGATGCTCTACAGGTA 60.256 40.741 0.00 0.00 37.00 3.08
2735 13021 6.463614 GGTGATCATAAAGATGCTCTACAGGT 60.464 42.308 0.00 0.00 37.00 4.00
2736 13022 5.931146 GGTGATCATAAAGATGCTCTACAGG 59.069 44.000 0.00 0.00 37.00 4.00
2737 13023 5.931146 GGGTGATCATAAAGATGCTCTACAG 59.069 44.000 0.00 0.00 37.00 2.74
2738 13024 5.366477 TGGGTGATCATAAAGATGCTCTACA 59.634 40.000 0.00 0.00 37.00 2.74
2739 13025 5.858381 TGGGTGATCATAAAGATGCTCTAC 58.142 41.667 0.00 0.00 37.00 2.59
2740 13026 5.604231 ACTGGGTGATCATAAAGATGCTCTA 59.396 40.000 0.00 0.00 37.00 2.43
2741 13027 4.411540 ACTGGGTGATCATAAAGATGCTCT 59.588 41.667 0.00 0.00 37.00 4.09
2742 13028 4.712476 ACTGGGTGATCATAAAGATGCTC 58.288 43.478 0.00 0.00 37.00 4.26
2743 13029 4.785346 ACTGGGTGATCATAAAGATGCT 57.215 40.909 0.00 0.00 37.00 3.79
2744 13030 5.050091 CGTAACTGGGTGATCATAAAGATGC 60.050 44.000 0.00 0.00 37.00 3.91
2745 13031 6.049149 ACGTAACTGGGTGATCATAAAGATG 58.951 40.000 0.00 0.00 37.00 2.90
2746 13032 6.235231 ACGTAACTGGGTGATCATAAAGAT 57.765 37.500 0.00 0.00 40.48 2.40
2747 13033 5.670792 ACGTAACTGGGTGATCATAAAGA 57.329 39.130 0.00 0.00 0.00 2.52
2748 13034 5.642063 ACAACGTAACTGGGTGATCATAAAG 59.358 40.000 0.00 0.00 0.00 1.85
2749 13035 5.410132 CACAACGTAACTGGGTGATCATAAA 59.590 40.000 0.00 0.00 0.00 1.40
2750 13036 4.932799 CACAACGTAACTGGGTGATCATAA 59.067 41.667 0.00 0.00 0.00 1.90
2751 13037 4.221041 TCACAACGTAACTGGGTGATCATA 59.779 41.667 0.00 0.00 33.88 2.15
2752 13038 3.007506 TCACAACGTAACTGGGTGATCAT 59.992 43.478 0.00 0.00 33.88 2.45
2753 13039 2.365941 TCACAACGTAACTGGGTGATCA 59.634 45.455 0.00 0.00 33.88 2.92
2754 13040 2.735134 GTCACAACGTAACTGGGTGATC 59.265 50.000 0.00 0.00 40.23 2.92
2755 13041 2.103432 TGTCACAACGTAACTGGGTGAT 59.897 45.455 0.00 0.00 40.23 3.06
2756 13042 1.481363 TGTCACAACGTAACTGGGTGA 59.519 47.619 0.00 0.00 36.24 4.02
2757 13043 1.942677 TGTCACAACGTAACTGGGTG 58.057 50.000 0.00 0.00 0.00 4.61
2758 13044 2.922740 ATGTCACAACGTAACTGGGT 57.077 45.000 0.00 0.00 0.00 4.51
2759 13045 3.562141 TCAAATGTCACAACGTAACTGGG 59.438 43.478 0.00 0.00 0.00 4.45
2760 13046 4.804608 TCAAATGTCACAACGTAACTGG 57.195 40.909 0.00 0.00 0.00 4.00
2761 13047 6.015504 GCTATCAAATGTCACAACGTAACTG 58.984 40.000 0.00 0.00 0.00 3.16
2762 13048 5.699001 TGCTATCAAATGTCACAACGTAACT 59.301 36.000 0.00 0.00 0.00 2.24
2763 13049 5.788531 GTGCTATCAAATGTCACAACGTAAC 59.211 40.000 0.00 0.00 0.00 2.50
2764 13050 5.467063 TGTGCTATCAAATGTCACAACGTAA 59.533 36.000 0.00 0.00 35.08 3.18
2765 13051 4.991687 TGTGCTATCAAATGTCACAACGTA 59.008 37.500 0.00 0.00 35.08 3.57
2766 13052 3.812609 TGTGCTATCAAATGTCACAACGT 59.187 39.130 0.00 0.00 35.08 3.99
2767 13053 4.151070 GTGTGCTATCAAATGTCACAACG 58.849 43.478 0.00 0.00 39.07 4.10
2768 13054 5.107109 TGTGTGCTATCAAATGTCACAAC 57.893 39.130 0.00 0.00 39.07 3.32
2769 13055 5.278414 CCTTGTGTGCTATCAAATGTCACAA 60.278 40.000 0.00 0.00 39.07 3.33
2770 13056 4.216042 CCTTGTGTGCTATCAAATGTCACA 59.784 41.667 0.00 0.00 35.57 3.58
2771 13057 4.726416 CCTTGTGTGCTATCAAATGTCAC 58.274 43.478 0.00 0.00 0.00 3.67
2772 13058 3.191162 GCCTTGTGTGCTATCAAATGTCA 59.809 43.478 0.00 0.00 0.00 3.58
2773 13059 3.191162 TGCCTTGTGTGCTATCAAATGTC 59.809 43.478 0.00 0.00 0.00 3.06
2774 13060 3.156293 TGCCTTGTGTGCTATCAAATGT 58.844 40.909 0.00 0.00 0.00 2.71
2775 13061 3.853831 TGCCTTGTGTGCTATCAAATG 57.146 42.857 0.00 0.00 0.00 2.32
2776 13062 4.142093 GGAATGCCTTGTGTGCTATCAAAT 60.142 41.667 0.00 0.00 0.00 2.32
2777 13063 3.193267 GGAATGCCTTGTGTGCTATCAAA 59.807 43.478 0.00 0.00 0.00 2.69
2778 13064 2.754552 GGAATGCCTTGTGTGCTATCAA 59.245 45.455 0.00 0.00 0.00 2.57
2779 13065 2.025981 AGGAATGCCTTGTGTGCTATCA 60.026 45.455 0.00 0.00 43.90 2.15
2780 13066 2.648059 AGGAATGCCTTGTGTGCTATC 58.352 47.619 0.00 0.00 43.90 2.08
2781 13067 2.814805 AGGAATGCCTTGTGTGCTAT 57.185 45.000 0.00 0.00 43.90 2.97
2799 13085 6.879276 TTATGTAACTCTCAGATACCGGAG 57.121 41.667 9.46 0.00 36.19 4.63
2800 13086 7.232188 AGATTATGTAACTCTCAGATACCGGA 58.768 38.462 9.46 0.00 0.00 5.14
2801 13087 7.175119 TGAGATTATGTAACTCTCAGATACCGG 59.825 40.741 0.00 0.00 40.24 5.28
2802 13088 8.100508 TGAGATTATGTAACTCTCAGATACCG 57.899 38.462 0.00 0.00 40.24 4.02
2807 13093 8.994170 CGACTATGAGATTATGTAACTCTCAGA 58.006 37.037 7.46 2.51 46.13 3.27
2808 13094 8.994170 TCGACTATGAGATTATGTAACTCTCAG 58.006 37.037 7.46 0.00 46.13 3.35
2809 13095 8.904099 TCGACTATGAGATTATGTAACTCTCA 57.096 34.615 4.16 4.16 46.75 3.27
2810 13096 9.820229 CTTCGACTATGAGATTATGTAACTCTC 57.180 37.037 0.00 0.00 36.72 3.20
2811 13097 8.788806 CCTTCGACTATGAGATTATGTAACTCT 58.211 37.037 0.00 0.00 0.00 3.24
2812 13098 8.784994 TCCTTCGACTATGAGATTATGTAACTC 58.215 37.037 0.00 0.00 0.00 3.01
2813 13099 8.693120 TCCTTCGACTATGAGATTATGTAACT 57.307 34.615 0.00 0.00 0.00 2.24
2814 13100 9.915629 ATTCCTTCGACTATGAGATTATGTAAC 57.084 33.333 0.00 0.00 0.00 2.50
2823 13109 9.914131 CAAATACATATTCCTTCGACTATGAGA 57.086 33.333 4.95 0.00 35.95 3.27
2824 13110 9.914131 TCAAATACATATTCCTTCGACTATGAG 57.086 33.333 4.95 0.00 35.95 2.90
2825 13111 9.692749 GTCAAATACATATTCCTTCGACTATGA 57.307 33.333 4.95 0.00 35.95 2.15
2826 13112 9.476202 TGTCAAATACATATTCCTTCGACTATG 57.524 33.333 0.00 0.00 37.55 2.23
2842 13128 9.102757 GCTATCTCTTTCTTCATGTCAAATACA 57.897 33.333 0.00 0.00 43.86 2.29
2843 13129 9.102757 TGCTATCTCTTTCTTCATGTCAAATAC 57.897 33.333 0.00 0.00 0.00 1.89
2844 13130 9.671279 TTGCTATCTCTTTCTTCATGTCAAATA 57.329 29.630 0.00 0.00 0.00 1.40
2845 13131 8.571461 TTGCTATCTCTTTCTTCATGTCAAAT 57.429 30.769 0.00 0.00 0.00 2.32
2846 13132 7.984422 TTGCTATCTCTTTCTTCATGTCAAA 57.016 32.000 0.00 0.00 0.00 2.69
2847 13133 9.671279 TTATTGCTATCTCTTTCTTCATGTCAA 57.329 29.630 0.00 0.00 0.00 3.18
2848 13134 9.671279 TTTATTGCTATCTCTTTCTTCATGTCA 57.329 29.630 0.00 0.00 0.00 3.58
2853 13139 9.725019 TCAGTTTTATTGCTATCTCTTTCTTCA 57.275 29.630 0.00 0.00 0.00 3.02
2856 13142 8.660373 CGTTCAGTTTTATTGCTATCTCTTTCT 58.340 33.333 0.00 0.00 0.00 2.52
2857 13143 8.656849 TCGTTCAGTTTTATTGCTATCTCTTTC 58.343 33.333 0.00 0.00 0.00 2.62
2858 13144 8.547967 TCGTTCAGTTTTATTGCTATCTCTTT 57.452 30.769 0.00 0.00 0.00 2.52
2859 13145 8.723942 ATCGTTCAGTTTTATTGCTATCTCTT 57.276 30.769 0.00 0.00 0.00 2.85
2860 13146 7.981789 TGATCGTTCAGTTTTATTGCTATCTCT 59.018 33.333 0.00 0.00 0.00 3.10
2861 13147 8.131455 TGATCGTTCAGTTTTATTGCTATCTC 57.869 34.615 0.00 0.00 0.00 2.75
2862 13148 8.668510 ATGATCGTTCAGTTTTATTGCTATCT 57.331 30.769 2.21 0.00 34.73 1.98
2866 13152 7.645340 GCATAATGATCGTTCAGTTTTATTGCT 59.355 33.333 2.72 0.00 34.73 3.91
2867 13153 7.645340 AGCATAATGATCGTTCAGTTTTATTGC 59.355 33.333 2.72 7.70 34.73 3.56
2871 13157 8.335356 GCTTAGCATAATGATCGTTCAGTTTTA 58.665 33.333 2.72 0.00 34.73 1.52
2872 13158 7.066284 AGCTTAGCATAATGATCGTTCAGTTTT 59.934 33.333 7.07 0.00 34.73 2.43
2873 13159 6.540189 AGCTTAGCATAATGATCGTTCAGTTT 59.460 34.615 7.07 0.00 34.73 2.66
2874 13160 6.051717 AGCTTAGCATAATGATCGTTCAGTT 58.948 36.000 7.07 0.00 34.73 3.16
2875 13161 5.605534 AGCTTAGCATAATGATCGTTCAGT 58.394 37.500 7.07 1.96 34.73 3.41
2876 13162 7.169813 TGTTAGCTTAGCATAATGATCGTTCAG 59.830 37.037 7.07 0.00 34.73 3.02
2877 13163 6.983890 TGTTAGCTTAGCATAATGATCGTTCA 59.016 34.615 7.07 0.00 36.00 3.18
2878 13164 7.382488 TCTGTTAGCTTAGCATAATGATCGTTC 59.618 37.037 7.07 0.00 0.00 3.95
2879 13165 7.210174 TCTGTTAGCTTAGCATAATGATCGTT 58.790 34.615 7.07 5.33 0.00 3.85
2880 13166 6.749139 TCTGTTAGCTTAGCATAATGATCGT 58.251 36.000 7.07 0.00 0.00 3.73
2881 13167 7.201504 CCATCTGTTAGCTTAGCATAATGATCG 60.202 40.741 7.07 0.00 0.00 3.69
2882 13168 7.065563 CCCATCTGTTAGCTTAGCATAATGATC 59.934 40.741 7.07 0.00 0.00 2.92
2883 13169 6.883217 CCCATCTGTTAGCTTAGCATAATGAT 59.117 38.462 7.07 1.81 0.00 2.45
2884 13170 6.183361 ACCCATCTGTTAGCTTAGCATAATGA 60.183 38.462 7.07 0.00 0.00 2.57
2885 13171 6.000219 ACCCATCTGTTAGCTTAGCATAATG 59.000 40.000 7.07 1.53 0.00 1.90
2886 13172 6.043706 AGACCCATCTGTTAGCTTAGCATAAT 59.956 38.462 7.07 0.00 32.29 1.28
2887 13173 5.366768 AGACCCATCTGTTAGCTTAGCATAA 59.633 40.000 7.07 0.00 32.29 1.90
2888 13174 4.901849 AGACCCATCTGTTAGCTTAGCATA 59.098 41.667 7.07 0.00 32.29 3.14
2889 13175 3.713764 AGACCCATCTGTTAGCTTAGCAT 59.286 43.478 7.07 0.00 32.29 3.79
2890 13176 3.107601 AGACCCATCTGTTAGCTTAGCA 58.892 45.455 7.07 0.00 32.29 3.49
2891 13177 3.828875 AGACCCATCTGTTAGCTTAGC 57.171 47.619 0.00 0.00 32.29 3.09
2892 13178 5.091261 ACAAGACCCATCTGTTAGCTTAG 57.909 43.478 0.00 0.00 34.48 2.18
2893 13179 4.081087 GGACAAGACCCATCTGTTAGCTTA 60.081 45.833 0.00 0.00 34.48 3.09
2894 13180 3.307762 GGACAAGACCCATCTGTTAGCTT 60.308 47.826 0.00 0.00 34.48 3.74
2895 13181 2.237392 GGACAAGACCCATCTGTTAGCT 59.763 50.000 0.00 0.00 34.48 3.32
2896 13182 2.027192 TGGACAAGACCCATCTGTTAGC 60.027 50.000 0.00 0.00 34.48 3.09
2897 13183 3.981071 TGGACAAGACCCATCTGTTAG 57.019 47.619 0.00 0.00 34.48 2.34
2904 13190 2.577563 TGATGTGATGGACAAGACCCAT 59.422 45.455 0.00 0.00 46.40 4.00
2905 13191 1.984424 TGATGTGATGGACAAGACCCA 59.016 47.619 0.00 0.00 38.36 4.51
2906 13192 2.787473 TGATGTGATGGACAAGACCC 57.213 50.000 0.00 0.00 38.36 4.46
2907 13193 4.521146 AGAATGATGTGATGGACAAGACC 58.479 43.478 0.00 0.00 38.36 3.85
2908 13194 4.574013 GGAGAATGATGTGATGGACAAGAC 59.426 45.833 0.00 0.00 38.36 3.01
2909 13195 4.472470 AGGAGAATGATGTGATGGACAAGA 59.528 41.667 0.00 0.00 38.36 3.02
2910 13196 4.778579 AGGAGAATGATGTGATGGACAAG 58.221 43.478 0.00 0.00 38.36 3.16
2911 13197 4.849813 AGGAGAATGATGTGATGGACAA 57.150 40.909 0.00 0.00 38.36 3.18
2912 13198 5.955961 TTAGGAGAATGATGTGATGGACA 57.044 39.130 0.00 0.00 39.53 4.02
2913 13199 6.528321 TCATTAGGAGAATGATGTGATGGAC 58.472 40.000 0.00 0.00 32.21 4.02
2914 13200 6.752285 TCATTAGGAGAATGATGTGATGGA 57.248 37.500 0.00 0.00 32.21 3.41
2922 13208 6.575847 CGGGATCACATCATTAGGAGAATGAT 60.576 42.308 6.90 6.90 45.40 2.45
2923 13209 5.279657 CGGGATCACATCATTAGGAGAATGA 60.280 44.000 0.00 2.66 40.50 2.57
2924 13210 4.934001 CGGGATCACATCATTAGGAGAATG 59.066 45.833 0.00 0.00 0.00 2.67
2925 13211 4.594920 ACGGGATCACATCATTAGGAGAAT 59.405 41.667 0.00 0.00 0.00 2.40
2926 13212 3.967326 ACGGGATCACATCATTAGGAGAA 59.033 43.478 0.00 0.00 0.00 2.87
2927 13213 3.576861 ACGGGATCACATCATTAGGAGA 58.423 45.455 0.00 0.00 0.00 3.71
2928 13214 4.342862 AACGGGATCACATCATTAGGAG 57.657 45.455 0.00 0.00 0.00 3.69
2929 13215 7.547697 TTATAACGGGATCACATCATTAGGA 57.452 36.000 0.00 0.00 0.00 2.94
2930 13216 8.668353 CATTTATAACGGGATCACATCATTAGG 58.332 37.037 0.00 0.00 0.00 2.69
2931 13217 9.435688 TCATTTATAACGGGATCACATCATTAG 57.564 33.333 0.00 0.00 0.00 1.73
2932 13218 9.214957 GTCATTTATAACGGGATCACATCATTA 57.785 33.333 0.00 0.00 0.00 1.90
2933 13219 7.719193 TGTCATTTATAACGGGATCACATCATT 59.281 33.333 0.00 0.00 0.00 2.57
2934 13220 7.223584 TGTCATTTATAACGGGATCACATCAT 58.776 34.615 0.00 0.00 0.00 2.45
2935 13221 6.587273 TGTCATTTATAACGGGATCACATCA 58.413 36.000 0.00 0.00 0.00 3.07
2936 13222 7.226720 AGTTGTCATTTATAACGGGATCACATC 59.773 37.037 0.00 0.00 34.59 3.06
2937 13223 7.054124 AGTTGTCATTTATAACGGGATCACAT 58.946 34.615 0.00 0.00 34.59 3.21
2938 13224 6.411376 AGTTGTCATTTATAACGGGATCACA 58.589 36.000 0.00 0.00 34.59 3.58
2939 13225 6.537301 TGAGTTGTCATTTATAACGGGATCAC 59.463 38.462 0.00 0.00 34.59 3.06
2940 13226 6.645306 TGAGTTGTCATTTATAACGGGATCA 58.355 36.000 0.00 0.00 34.59 2.92
2941 13227 7.226720 ACATGAGTTGTCATTTATAACGGGATC 59.773 37.037 0.00 0.00 40.84 3.36
2942 13228 7.054124 ACATGAGTTGTCATTTATAACGGGAT 58.946 34.615 0.00 0.00 40.84 3.85
2943 13229 6.411376 ACATGAGTTGTCATTTATAACGGGA 58.589 36.000 0.00 0.00 40.84 5.14
2944 13230 6.677781 ACATGAGTTGTCATTTATAACGGG 57.322 37.500 0.00 0.00 40.84 5.28
2945 13231 7.747888 TGAACATGAGTTGTCATTTATAACGG 58.252 34.615 0.00 0.00 40.84 4.44
2946 13232 9.213819 CATGAACATGAGTTGTCATTTATAACG 57.786 33.333 8.89 0.00 40.84 3.18
2947 13233 9.507280 CCATGAACATGAGTTGTCATTTATAAC 57.493 33.333 15.21 0.00 40.84 1.89
2948 13234 9.241919 ACCATGAACATGAGTTGTCATTTATAA 57.758 29.630 15.21 0.00 40.84 0.98
2949 13235 8.806429 ACCATGAACATGAGTTGTCATTTATA 57.194 30.769 15.21 0.00 40.84 0.98
2950 13236 7.707624 ACCATGAACATGAGTTGTCATTTAT 57.292 32.000 15.21 0.00 40.84 1.40
2951 13237 7.523293 AACCATGAACATGAGTTGTCATTTA 57.477 32.000 15.21 0.00 40.84 1.40
2952 13238 6.409524 AACCATGAACATGAGTTGTCATTT 57.590 33.333 15.21 0.00 40.84 2.32
2953 13239 6.151648 CCTAACCATGAACATGAGTTGTCATT 59.848 38.462 20.60 6.60 40.84 2.57
2954 13240 5.649395 CCTAACCATGAACATGAGTTGTCAT 59.351 40.000 20.60 0.00 44.85 3.06
2955 13241 5.003160 CCTAACCATGAACATGAGTTGTCA 58.997 41.667 20.60 0.00 41.20 3.58
2956 13242 5.245531 TCCTAACCATGAACATGAGTTGTC 58.754 41.667 20.60 0.00 41.20 3.18
2957 13243 5.241403 TCCTAACCATGAACATGAGTTGT 57.759 39.130 20.60 9.01 41.20 3.32
2958 13244 6.381801 GTTTCCTAACCATGAACATGAGTTG 58.618 40.000 20.60 14.40 41.20 3.16
2959 13245 6.575162 GTTTCCTAACCATGAACATGAGTT 57.425 37.500 15.21 16.92 41.20 3.01
2973 13259 7.754851 TCAAAGATGGTTAAGGTTTCCTAAC 57.245 36.000 0.00 0.00 31.13 2.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.